BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>041740
MQSHKAFKLLLWCSCLTFASLLDQGKGEKCSKYSPTLQQTQVGFGSPPTFMARVHNNCPM
CPVINIHLKCGNFSQALVNPRLLKVISYNNCVVNSGFPLSPLQTFSFNYSHPKYVMQPAT
WSFQCE

High Scoring Gene Products

Symbol, full name Information P value
TPD1
AT4G24972
protein from Arabidopsis thaliana 8.2e-12
AT1G32583 protein from Arabidopsis thaliana 1.7e-11
AT4G32110 protein from Arabidopsis thaliana 1.9e-05
AT4G32105 protein from Arabidopsis thaliana 0.00027

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041740
        (126 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1006230300 - symbol:TPD1 "AT4G24972" species:3...   160  8.2e-12   1
TAIR|locus:1009023131 - symbol:AT1G32583 "AT1G32583" spec...   157  1.7e-11   1
TAIR|locus:2116612 - symbol:AT4G32110 species:3702 "Arabi...   100  1.9e-05   1
TAIR|locus:505006542 - symbol:AT4G32105 species:3702 "Ara...    89  0.00027   1


>TAIR|locus:1006230300 [details] [associations]
            symbol:TPD1 "AT4G24972" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0001709 "cell fate determination"
            evidence=IMP] [GO:0048653 "anther development" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0048653 GO:GO:0001709 EMBL:AY394846
            IPI:IPI00526307 RefSeq:NP_974612.1 UniGene:At.47965 DIP:DIP-29700N
            IntAct:Q6TLJ2 EnsemblPlants:AT4G24972.1 GeneID:2745725
            KEGG:ath:AT4G24972 TAIR:At4g24972 eggNOG:NOG325440
            HOGENOM:HOG000077765 InParanoid:Q6TLJ2 OMA:RIHINCG
            ProtClustDB:CLSN2915210 Genevestigator:Q6TLJ2 Uniprot:Q6TLJ2
        Length = 176

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 41/113 (36%), Positives = 60/113 (53%)

Query:     3 SHKAFKLLLWCSCLTFASLLDQGKGEKCSKYSPTLQQ--TQVGFGSPPTFMARVHNNCPM 60
             SH+   LL   +  T  S+  +  GEKC      + Q  T+      P +M  + N C  
Sbjct:    50 SHRKMLLLSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMS 109

Query:    61 -CPVINIHLKCGNFSQA-LVNPRLLKVISYNNCVVNSGFPLSPLQTFSFNYSH 111
              C +  IH+ CG FS A L+NPR+ K I Y++C+VN+G PL    T SF+Y++
Sbjct:   110 GCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYAN 162


>TAIR|locus:1009023131 [details] [associations]
            symbol:AT1G32583 "AT1G32583" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0009408 "response to heat"
            evidence=IEP] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009408
            EMBL:DQ487503 IPI:IPI00656613 RefSeq:NP_001031128.1
            UniGene:At.49435 EnsemblPlants:AT1G32583.1 GeneID:3766880
            KEGG:ath:AT1G32583 TAIR:At1g32583 OMA:VEIFNSC PhylomeDB:Q1G3T1
            Genevestigator:Q2V4J6 Uniprot:Q1G3T1
        Length = 179

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 37/101 (36%), Positives = 55/101 (54%)

Query:    27 GEKCSKYSPTLQQ--TQVGFGSPPTFMARVHNNCPM-CPVINIHLKCGNFSQA-LVNPRL 82
             G+ CSK    L Q  T       P++   + N+C   C +  IH+ CG FS   LVNPR+
Sbjct:    77 GQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRV 136

Query:    83 LKVISYNNCVVNSGFPLSPLQTFSFNYSHP-KYVMQPATWS 122
              + + Y++C+VN G PL P Q+ SF Y++   Y +  A+ S
Sbjct:   137 FRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVS 177


>TAIR|locus:2116612 [details] [associations]
            symbol:AT4G32110 species:3702 "Arabidopsis thaliana"
            [GO:0005576 "extracellular region" evidence=ISM] [GO:0006486
            "protein glycosylation" evidence=IEA] [GO:0008378
            "galactosyltransferase activity" evidence=IEA] [GO:0016020
            "membrane" evidence=IEA] [GO:0016757 "transferase activity,
            transferring glycosyl groups" evidence=ISS] InterPro:IPR002659
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0016020 GO:GO:0006486
            GO:GO:0008378 PANTHER:PTHR11214 HOGENOM:HOG000243728 EMBL:BT014801
            EMBL:BT015698 IPI:IPI00518123 RefSeq:NP_680754.1 UniGene:At.49722
            EnsemblPlants:AT4G32110.1 GeneID:829343 KEGG:ath:AT4G32110
            TAIR:At4g32110 eggNOG:NOG324125 InParanoid:Q6ID72 PhylomeDB:Q6ID72
            ProtClustDB:CLSN2689712 Genevestigator:Q6ID72 Uniprot:Q6ID72
        Length = 124

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 34/106 (32%), Positives = 51/106 (48%)

Query:     6 AFKLLLWCSCLTFASLLDQGKGEKCSKYSPTLQQTQVG--FGSPPTFMARVHNNCPMCPV 63
             A KLL  C  L F + ++QG G+ CS  S +++Q++ G    + P +  RV N C  C  
Sbjct:     5 ACKLL--CLVL-FLAFVNQGYGD-CSLNSLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKF 60

Query:    64 INIHLKCGNFSQALVNPRLLKVISYNNCVVNSGFPLSPLQTFSFNY 109
              N  L C  F+        L + S + C+VN+G  + P     F Y
Sbjct:    61 QNTELLCVGFNSVTPIDTSLLLKSGDACLVNAGKFIVPHVDIVFKY 106


>TAIR|locus:505006542 [details] [associations]
            symbol:AT4G32105 species:3702 "Arabidopsis thaliana"
            [GO:0005576 "extracellular region" evidence=ISM] [GO:0006486
            "protein glycosylation" evidence=IEA] [GO:0008378
            "galactosyltransferase activity" evidence=IEA] [GO:0016020
            "membrane" evidence=IEA] InterPro:IPR002659 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0016020 GO:GO:0006486 GO:GO:0008378
            PANTHER:PTHR11214 HOGENOM:HOG000243728 ProtClustDB:CLSN2689712
            EMBL:AY086382 IPI:IPI00527985 RefSeq:NP_567887.1 UniGene:At.31686
            PaxDb:Q8LCV8 EnsemblPlants:AT4G32105.1 GeneID:829342
            KEGG:ath:AT4G32105 TAIR:At4g32105 eggNOG:NOG313586
            InParanoid:Q8LCV8 OMA:VCHINHE PhylomeDB:Q8LCV8
            Genevestigator:Q8LCV8 Uniprot:Q8LCV8
        Length = 124

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 29/100 (29%), Positives = 47/100 (47%)

Query:    15 CLT-FASLLDQGKGEKCSKYSPTLQQTQVG--FGSPPTFMARVHNNCPMCPVINIHLKCG 71
             CL  F + ++QG G+ C     +++Q++ G    + P +  RV N C  C      L C 
Sbjct:    10 CLVLFLAFVNQGYGD-CHLNYLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKFQYTKLSCV 68

Query:    72 NFSQALVNPRLLKVISYNN--CVVNSGFPLSPLQTFSFNY 109
              F    V P    ++S +   C++N+G  + P   F FNY
Sbjct:    69 GFQS--VTPVATSLLSKSGDICLLNAGNFIFPHVDFVFNY 106


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.135   0.450    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126       126   0.00091  102 3  11 22  0.47    30
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  153 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.37u 0.10s 13.47t   Elapsed:  00:00:00
  Total cpu time:  13.37u 0.10s 13.47t   Elapsed:  00:00:00
  Start:  Sat May 11 03:04:49 2013   End:  Sat May 11 03:04:49 2013

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