BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041740
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MCM|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCM|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCN|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCN|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCO|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCO|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
Length = 442
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 92 VVNSGFPLSPLQTFSFNYSHPKYV 115
++N F L+PL S + HPKYV
Sbjct: 144 LINRSFALAPLLELSKGWHHPKYV 167
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
Length = 463
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 48 PTFMARVHNNCPMCPVINIHLKCGNFSQALVNPRLLKVISYN----NCVVNSGFP 98
P + ++ ++ M + + + CGN ++ P+L++ + + C V+ FP
Sbjct: 157 PRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFP 211
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
S108a Mutant From P. Aeruginosa
Length = 463
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 48 PTFMARVHNNCPMCPVINIHLKCGNFSQALVNPRLLKVISYN----NCVVNSGFP 98
P + ++ ++ M + + + CGN ++ P+L++ + + C V+ FP
Sbjct: 157 PRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFP 211
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
Length = 463
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 48 PTFMARVHNNCPMCPVINIHLKCGNFSQALVNPRLLKVISYN----NCVVNSGFP 98
P + ++ ++ M + + + CGN ++ P+L++ + + C V+ FP
Sbjct: 157 PRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFP 211
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH
ITS SUBSTRATE
pdb|3C04|A Chain A, Structure Of The P368g Mutant Of PmmPGM FROM P. AERUGINOSA
Length = 463
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 48 PTFMARVHNNCPMCPVINIHLKCGNFSQALVNPRLLKVISYN----NCVVNSGFP 98
P + ++ ++ M + + + CGN ++ P+L++ + + C V+ FP
Sbjct: 157 PRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFP 211
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
Length = 463
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 48 PTFMARVHNNCPMCPVINIHLKCGNFSQALVNPRLLKVISYN----NCVVNSGFP 98
P + ++ ++ M + + + CGN ++ P+L++ + + C V+ FP
Sbjct: 157 PRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFP 211
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
Length = 462
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 48 PTFMARVHNNCPMCPVINIHLKCGNFSQALVNPRLLKVISYN----NCVVNSGFP 98
P + ++ ++ M + + + CGN ++ P+L++ + + C V+ FP
Sbjct: 156 PRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFP 210
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
Bound
Length = 462
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 48 PTFMARVHNNCPMCPVINIHLKCGNFSQALVNPRLLKVISYN----NCVVNSGFP 98
P + ++ ++ M + + + CGN ++ P+L++ + + C V+ FP
Sbjct: 156 PRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFP 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,861,722
Number of Sequences: 62578
Number of extensions: 138799
Number of successful extensions: 310
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 9
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)