BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041740
         (126 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8MS78|Y1583_ARATH Uncharacterized protein At1g05835 OS=Arabidopsis thaliana
           GN=At1g05835 PE=2 SV=1
          Length = 127

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 71/107 (66%), Gaps = 5/107 (4%)

Query: 25  GKGEKCSKYS--PTLQQTQVGFGSPPTFMARVHNNCPMCPVINIHLKCGNFSQALVNPRL 82
           G G  C   S  P ++QTQV +     F   V N CPMCP+IN+ LKC  F Q+LV+P  
Sbjct: 21  GSGAICEGKSSEPAVRQTQVKWREGKKFRVEVMNKCPMCPIINLRLKCQGFPQSLVDPTF 80

Query: 83  LKVISYN--NCVVNSGFPLSPLQTFSFNYSHP-KYVMQPATWSFQCE 126
           L+V+S +  NCVVN G PLSP+QT SFNYS+  ++ ++P +WSFQCE
Sbjct: 81  LRVLSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFALRPLSWSFQCE 127


>sp|Q9SZH2|PER43_ARATH Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=2 SV=2
          Length = 326

 Score = 29.3 bits (64), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 48  PTFMARVHNNCPMCPVINIHLKCGNFSQALVNPRLLKVISYNNCVVNS 95
           PTF+  +   CP    IN+ L    FS+ L + ++L+ I     V+ +
Sbjct: 218 PTFLPELTTQCPQNGDINVRLPIDRFSERLFDKQILQNIKDGFAVLQT 265


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.135    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,207,076
Number of Sequences: 539616
Number of extensions: 1770535
Number of successful extensions: 3473
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3469
Number of HSP's gapped (non-prelim): 3
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)