Query 041740
Match_columns 126
No_of_seqs 102 out of 136
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 17:23:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d30_A YOAJ, expansin like pro 50.1 5.7 0.00019 30.1 1.3 53 49-110 64-119 (208)
2 3vhs_A ATPase wrnip1; zinc fin 37.9 13 0.00045 20.0 1.1 8 46-53 1-8 (29)
3 1yew_A Particulate methane mon 36.3 59 0.002 27.3 5.4 56 47-108 265-331 (382)
4 2hcz_X Beta-expansin 1A; domai 29.4 57 0.002 25.2 4.1 26 50-76 89-116 (245)
5 1n10_A PHL P I, pollen allerge 29.4 73 0.0025 24.6 4.7 53 50-110 89-153 (241)
6 3e8v_A Possible transglutamina 29.3 28 0.00097 23.0 1.9 17 94-111 10-26 (82)
7 2jv2_A Putative uncharacterize 27.4 43 0.0015 21.9 2.6 28 95-122 38-65 (83)
8 3rfr_A PMOB; membrane, oxidore 26.3 55 0.0019 27.8 3.6 58 45-108 297-363 (419)
9 3qwz_A Transitional endoplasmi 16.0 33 0.0011 26.0 0.1 32 91-122 141-172 (211)
10 1nei_A Hypothetical protein YO 15.0 99 0.0034 19.4 2.1 31 46-82 2-34 (60)
No 1
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A
Probab=50.13 E-value=5.7 Score=30.06 Aligned_cols=53 Identities=9% Similarity=0.160 Sum_probs=37.3
Q ss_pred eEEEEEEeCCCCCCceeEEEecCCcccc-ccCccceeeecCC--eeEEeCCccCCCCCeeEEEec
Q 041740 49 TFMARVHNNCPMCPVINIHLKCGNFSQA-LVNPRLLKVISYN--NCVVNSGFPLSPLQTFSFNYS 110 (126)
Q Consensus 49 ~~~VtI~N~C~~C~~~~V~l~C~gF~s~-~VdP~~fr~~~~~--~CLvn~G~pi~~g~~v~F~YA 110 (126)
.=.|+|++.|+.|+..++-|+=..|... ..+..++.. .+. .|-. +| .|+|+.-
T Consensus 64 sv~V~v~D~CP~C~~~~~DLS~~aF~~la~~~~G~i~v-~~~~V~C~~-------~G-~i~f~v~ 119 (208)
T 3d30_A 64 KTTVYVTDLYPEGARGALDLSPNAFRKIGNMKDGKINI-KWRVVKAPI-------TG-NFTYRIK 119 (208)
T ss_dssp EEEEEEEEECTTCCTTCEEECHHHHHHHSCGGGSSEEE-EEEEECCCC-------CS-CCEEEEC
T ss_pred cEEEEEEECCCCCCCCeEECCHHHHHHhcccCCCEEEE-EEEEeCCCC-------CC-ceeEEEc
Confidence 3579999999889999999999888874 446666653 221 3522 23 5777766
No 2
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=37.88 E-value=13 Score=19.97 Aligned_cols=8 Identities=25% Similarity=0.663 Sum_probs=3.4
Q ss_pred CCCeEEEE
Q 041740 46 SPPTFMAR 53 (126)
Q Consensus 46 g~p~~~Vt 53 (126)
|.|||+|+
T Consensus 1 gspef~vq 8 (29)
T 3vhs_A 1 GSPEFQVQ 8 (29)
T ss_dssp ----CEEE
T ss_pred CCCceeee
Confidence 56999996
No 3
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=36.33 E-value=59 Score=27.26 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=38.4
Q ss_pred CCeEEEEEEeCCCCCCceeEEEecCCcccc---ccCccceeeecC-Cee-------EEeCCccCCCCCeeEEE
Q 041740 47 PPTFMARVHNNCPMCPVINIHLKCGNFSQA---LVNPRLLKVISY-NNC-------VVNSGFPLSPLQTFSFN 108 (126)
Q Consensus 47 ~p~~~VtI~N~C~~C~~~~V~l~C~gF~s~---~VdP~~fr~~~~-~~C-------Lvn~G~pi~~g~~v~F~ 108 (126)
--...++|+|+=. = -| .=+.|+++ =+||++..-..+ -+. .|+|-.||++|++-+++
T Consensus 265 ~l~~~~~VtN~g~-~---pv--rlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGETr~~~ 331 (382)
T 1yew_A 265 AMRMKLTITNHGN-S---PI--RLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVD 331 (382)
T ss_dssp EEEEEEEEEECSS-S---CE--EEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTCEEEEE
T ss_pred EEEEEEEEEcCCC-C---ce--EeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCceeEEE
Confidence 5679999999875 2 33 44788886 279988554322 122 45677799999997663
No 4
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}
Probab=29.43 E-value=57 Score=25.20 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=22.2
Q ss_pred EEEEEEeCCCCC--CceeEEEecCCcccc
Q 041740 50 FMARVHNNCPMC--PVINIHLKCGNFSQA 76 (126)
Q Consensus 50 ~~VtI~N~C~~C--~~~~V~l~C~gF~s~ 76 (126)
-.|+|++.|. | +..+..|+=..|...
T Consensus 89 v~V~VtD~C~-C~~~~~hfDLS~~AF~~i 116 (245)
T 2hcz_X 89 VTVYITDMNY-EPIAPYHFDLSGKAFGSL 116 (245)
T ss_dssp EEEEEEEECC-CTTSSSEEEECHHHHHHT
T ss_pred EEEEEEeccC-CCCCCccEEcCHHHHHHH
Confidence 5899999998 8 778888988888863
No 5
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3
Probab=29.36 E-value=73 Score=24.57 Aligned_cols=53 Identities=9% Similarity=0.181 Sum_probs=35.4
Q ss_pred EEEEEEeCCCCC--CceeEEEecCCcccc-c-------cCccceeeecC--CeeEEeCCccCCCCCeeEEEec
Q 041740 50 FMARVHNNCPMC--PVINIHLKCGNFSQA-L-------VNPRLLKVISY--NNCVVNSGFPLSPLQTFSFNYS 110 (126)
Q Consensus 50 ~~VtI~N~C~~C--~~~~V~l~C~gF~s~-~-------VdP~~fr~~~~--~~CLvn~G~pi~~g~~v~F~YA 110 (126)
=.|+|++.|. | +..++.|+=..|... . .+..++.. .+ -.|-..+ |..|+|+.-
T Consensus 89 v~V~VtD~C~-C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V-~yrrV~C~~~g------g~~i~f~v~ 153 (241)
T 1n10_A 89 VVVHITDDNE-EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELEL-QFRRVKCKYPE------GTKVTFHVE 153 (241)
T ss_dssp EEEEEEEECS-SCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEE-EEEECCCCCCT------TCCCEEEEC
T ss_pred EEEEEeEecC-CCCCCcceecCHHHHHHhhccCcccccccCCEEEE-EEEEEeCCCCC------CCceEEEEc
Confidence 4899999998 9 568899999999874 3 45555543 22 2473322 245777776
No 6
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=29.26 E-value=28 Score=23.03 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.6
Q ss_pred eCCccCCCCCeeEEEecC
Q 041740 94 NSGFPLSPLQTFSFNYSH 111 (126)
Q Consensus 94 n~G~pi~~g~~v~F~YA~ 111 (126)
.+|+|+ +|..|.|.|-|
T Consensus 10 ~~GkPV-~gA~Vefe~yN 26 (82)
T 3e8v_A 10 AEGQPV-ADATVEFKVYN 26 (82)
T ss_dssp TTSCBC-TTCEEEEEEEE
T ss_pred CCCCCC-CCCEEEEEEEE
Confidence 589999 57899999888
No 7
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=27.45 E-value=43 Score=21.88 Aligned_cols=28 Identities=4% Similarity=-0.062 Sum_probs=21.3
Q ss_pred CCccCCCCCeeEEEecCCCceeeeeeee
Q 041740 95 SGFPLSPLQTFSFNYSHPKYVMQPATWS 122 (126)
Q Consensus 95 ~G~pi~~g~~v~F~YA~~~f~l~p~ss~ 122 (126)
.|+|+..|+.|+...-....+|.+++.+
T Consensus 38 ~grPV~~GD~I~i~~~G~~i~F~Vv~t~ 65 (83)
T 2jv2_A 38 QGKTVRTGDVIGISILGKEVKFKVVQAY 65 (83)
T ss_dssp TTSEECTTCEEEEEETTEEEEEEEEEEE
T ss_pred CCCCccCCCEEEEeeCCCEEEEEEEEec
Confidence 3599999999998765566777777654
No 8
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=26.32 E-value=55 Score=27.78 Aligned_cols=58 Identities=19% Similarity=0.385 Sum_probs=37.7
Q ss_pred CCCCeEEEEEEeCCCCCCceeEEEecCCcccc---ccCccceeeec-C-CeeEEe----CCccCCCCCeeEEE
Q 041740 45 GSPPTFMARVHNNCPMCPVINIHLKCGNFSQA---LVNPRLLKVIS-Y-NNCVVN----SGFPLSPLQTFSFN 108 (126)
Q Consensus 45 ~g~p~~~VtI~N~C~~C~~~~V~l~C~gF~s~---~VdP~~fr~~~-~-~~CLvn----~G~pi~~g~~v~F~ 108 (126)
+.--+++++|+|+=. =|+ .=+.|+++ -+||++..... | ++-+.+ +..||.||++-+++
T Consensus 297 gR~l~~~~~VtN~g~-~pv-----rlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~pI~PGETrt~~ 363 (419)
T 3rfr_A 297 GRELTINVKVKNGTS-QPV-----RLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDDVIAPGESKEIV 363 (419)
T ss_dssp SSEEEEEEEEECCSS-SCB-----EEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCCCBCTTCEEEEE
T ss_pred CcEEEEEEEEecCCC-Cce-----EEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCCCcCCCcceEEE
Confidence 346679999999886 343 44788886 27998865431 1 222222 33399999997664
No 9
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=15.96 E-value=33 Score=26.03 Aligned_cols=32 Identities=6% Similarity=-0.054 Sum_probs=25.7
Q ss_pred eEEeCCccCCCCCeeEEEecCCCceeeeeeee
Q 041740 91 CVVNSGFPLSPLQTFSFNYSHPKYVMQPATWS 122 (126)
Q Consensus 91 CLvn~G~pi~~g~~v~F~YA~~~f~l~p~ss~ 122 (126)
.|.+.|+|+..|..|+..|......|.+++-.
T Consensus 141 ~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~ 172 (211)
T 3qwz_A 141 YFLEAYRPIRKGDIFLVRGGMRAVEFXVVETD 172 (211)
T ss_dssp HHTTCCEEEETTCEEECCCTTSCCEEEEEEEE
T ss_pred HHhhCCceeecCCEEEEccCCcEEEEEEEeec
Confidence 56667999999999998887777888887643
No 10
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=14.96 E-value=99 Score=19.36 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=20.4
Q ss_pred CCCeEEEEEEeCCCCCCceeEEEecCCccc-c-ccCccc
Q 041740 46 SPPTFMARVHNNCPMCPVINIHLKCGNFSQ-A-LVNPRL 82 (126)
Q Consensus 46 g~p~~~VtI~N~C~~C~~~~V~l~C~gF~s-~-~VdP~~ 82 (126)
|+.+|.+|++|.-. +|-+. ..|++ . +-||.+
T Consensus 2 g~~~~~lTvTNnnn-----GVSVd-k~~~~~~el~~p~~ 34 (60)
T 1nei_A 2 GKATYTVTVTNNSN-----GVSVD-YETETPMTLLVPEV 34 (60)
T ss_dssp CCCCEEEEEEETTT-----CCEEE-EECCCSGGGTCHHH
T ss_pred CcceEEEEEEeCCC-----ceEee-cccCChHHhcCcHH
Confidence 67899999999986 34443 23443 3 557754
Done!