Query 041740
Match_columns 126
No_of_seqs 102 out of 136
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 17:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041740.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041740hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cr5a2 d.31.1.1 (A:108-210) C 31.8 19 0.0014 22.9 3.2 28 95-122 41-68 (103)
2 d1neia_ d.253.1.1 (A:) Hypothe 28.3 17 0.0012 21.3 2.1 31 46-82 2-34 (60)
3 d2gu3a1 d.17.1.6 (A:99-161) Un 27.1 15 0.0011 21.6 1.9 23 36-58 19-42 (63)
4 d1exta3 g.24.1.1 (A:116-172) T 18.9 68 0.0049 18.4 3.6 33 58-92 2-36 (57)
5 d1cf1a2 b.1.18.11 (A:183-393) 16.3 1.4E+02 0.01 20.3 5.7 67 40-110 28-97 (211)
6 d1qcsa2 d.31.1.1 (A:86-201) C- 15.8 48 0.0035 21.3 2.6 27 95-121 41-67 (116)
7 d1f00i1 b.1.14.1 (I:658-752) I 15.6 45 0.0033 20.3 2.4 19 92-111 27-45 (95)
8 d1v43a2 b.40.6.3 (A:304-373) H 15.2 66 0.0048 17.7 3.0 30 91-120 35-65 (70)
9 d3brda3 b.42.7.1 (A:381-541) D 15.1 97 0.0071 21.2 4.3 48 61-111 70-122 (161)
10 d1sj1a_ d.58.1.4 (A:) Fe3S4-fe 14.9 30 0.0022 19.0 1.3 13 50-62 2-15 (66)
No 1
>d1cr5a2 d.31.1.1 (A:108-210) C-terminal domain of NSF-N, NSF-Nc {Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]}
Probab=31.77 E-value=19 Score=22.92 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=24.2
Q ss_pred CCccCCCCCeeEEEecCCCceeeeeeee
Q 041740 95 SGFPLSPLQTFSFNYSHPKYVMQPATWS 122 (126)
Q Consensus 95 ~G~pi~~g~~v~F~YA~~~f~l~p~ss~ 122 (126)
.|+++.+|+.+-|.|-...|.|++.+..
T Consensus 41 ~~Q~ft~gQ~l~f~f~~~~l~l~Vk~v~ 68 (103)
T d1cr5a2 41 ESQIFSPTQYLIMEFQGHFFDLKIRNVQ 68 (103)
T ss_dssp TTCEECTTCEEEEEETTEEEEEEEEEEE
T ss_pred cCCCCCCCcEEEEEECCcEEEEEEEEEE
Confidence 6799999999999999888888887654
No 2
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=28.29 E-value=17 Score=21.35 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=20.1
Q ss_pred CCCeEEEEEEeCCCCCCceeEEEecCCccc-c-ccCccc
Q 041740 46 SPPTFMARVHNNCPMCPVINIHLKCGNFSQ-A-LVNPRL 82 (126)
Q Consensus 46 g~p~~~VtI~N~C~~C~~~~V~l~C~gF~s-~-~VdP~~ 82 (126)
|+..|.|||+|+-. +|-++ ..|++ + +.||.+
T Consensus 2 gk~~~~lTvTNnnN-----GVSVD-~e~~~~~~L~~p~~ 34 (60)
T d1neia_ 2 GKATYTVTVTNNSN-----GVSVD-YETETPMTLLVPEV 34 (60)
T ss_dssp CCCCEEEEEEETTT-----CCEEE-EECCCSGGGTCHHH
T ss_pred CcceEEEEEEeCCC-----ceEec-ccccCHHHhcChHH
Confidence 67889999999987 34333 23444 2 556653
No 3
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=27.15 E-value=15 Score=21.63 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=17.6
Q ss_pred eEEEeecCC-CCCCeEEEEEEeCC
Q 041740 36 TLQQTQVGF-GSPPTFMARVHNNC 58 (126)
Q Consensus 36 ~V~Q~~tg~-~g~p~~~VtI~N~C 58 (126)
.|...+-|. .|.|.|+|+-.|.=
T Consensus 19 ki~~v~LG~~~~~pvWEVtY~~~~ 42 (63)
T d2gu3a1 19 KQKEVHLAREGNVLLWEVTYLDKE 42 (63)
T ss_dssp EEEEEEEEEETTEEEEEEEEECTT
T ss_pred eeeEEeeeeECCEEEEEEEEEeCC
Confidence 455566675 78999999998864
No 4
>d1exta3 g.24.1.1 (A:116-172) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.94 E-value=68 Score=18.41 Aligned_cols=33 Identities=24% Similarity=0.571 Sum_probs=25.9
Q ss_pred CCCCCceeEEEecCCcccc--ccCccceeeecCCeeE
Q 041740 58 CPMCPVINIHLKCGNFSQA--LVNPRLLKVISYNNCV 92 (126)
Q Consensus 58 C~~C~~~~V~l~C~gF~s~--~VdP~~fr~~~~~~CL 92 (126)
|.-|.-.-|++.|.+++.+ .-.+..|-+ ++.|+
T Consensus 2 CSlC~NGTV~ipC~e~q~TvC~ch~gFfl~--~~eCv 36 (57)
T d1exta3 2 CSLCLNGTVHLSCQEKQNTVCTCHAGFFLR--ENECV 36 (57)
T ss_dssp CCCCTTEEEEECCBTTBCCEEEECTTEEEE--TTEEE
T ss_pred CccccCCeEEeccccccCceeeccccceec--CCceE
Confidence 6558899999999999985 568888876 35554
No 5
>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}
Probab=16.34 E-value=1.4e+02 Score=20.35 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=41.5
Q ss_pred eecCC-CCCC-eEEEEEEeCCCCCCceeEEEecCCcccc-ccCccceeeecCCeeEEeCCccCCCCCeeEEEec
Q 041740 40 TQVGF-GSPP-TFMARVHNNCPMCPVINIHLKCGNFSQA-LVNPRLLKVISYNNCVVNSGFPLSPLQTFSFNYS 110 (126)
Q Consensus 40 ~~tg~-~g~p-~~~VtI~N~C~~C~~~~V~l~C~gF~s~-~VdP~~fr~~~~~~CLvn~G~pi~~g~~v~F~YA 110 (126)
.+.|. .|.+ ...|+|.|.+. =.++.|++.=-...+. .-.|...++- ......+++++++++.+-+|+
T Consensus 28 dr~~Y~~Ge~I~v~v~i~N~s~-~~v~~i~~~l~Q~~~~~~~s~~~~~~~---Va~~e~~~~~~~~~t~~k~~~ 97 (211)
T d1cf1a2 28 SKEIYYHGEPIPVTVAVTNSTE-KTVKKIKVLVEQVTNVVLYSSDYYIKT---VAAEEAQEKVPPNSSLTKTLT 97 (211)
T ss_dssp SCSEEETTCCEEEEEEEEECSS-SCEEEEEEEEEEEEEECSSSCCEEEEE---EEEEEESCCBCTTEEEEEEEE
T ss_pred CCceEcCCCEEEEEEEEEcCCC-cceeeEEEEEEEEEEEEEecCCceEEE---EEEEEecCccCCCcceEEEEE
Confidence 34443 5633 47899999887 6677777765555554 4466666542 123455677778877665554
No 6
>d1qcsa2 d.31.1.1 (A:86-201) C-terminal domain of NSF-N, NSF-Nc {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=15.78 E-value=48 Score=21.29 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=23.1
Q ss_pred CCccCCCCCeeEEEecCCCceeeeeee
Q 041740 95 SGFPLSPLQTFSFNYSHPKYVMQPATW 121 (126)
Q Consensus 95 ~G~pi~~g~~v~F~YA~~~f~l~p~ss 121 (126)
.|+++.+|+.+-|.|-...|.+++.+.
T Consensus 41 ~~Qift~gQ~l~f~f~~~~l~l~Vk~v 67 (116)
T d1qcsa2 41 NNQAFSVGQQLVFSFNDKLFGLLVKDI 67 (116)
T ss_dssp TTCEEETTCEEEEEETTEEEEEEEEEE
T ss_pred CCCCcCCCcEEEEEeCCcEEEEEEEEE
Confidence 479999999999999888888888654
No 7
>d1f00i1 b.1.14.1 (I:658-752) Intimin {Escherichia coli [TaxId: 562]}
Probab=15.60 E-value=45 Score=20.30 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=14.6
Q ss_pred EEeCCccCCCCCeeEEEecC
Q 041740 92 VVNSGFPLSPLQTFSFNYSH 111 (126)
Q Consensus 92 Lvn~G~pi~~g~~v~F~YA~ 111 (126)
+..+|+|| +|.+|.|.-..
T Consensus 27 v~D~gnpv-~g~~V~~~~~~ 45 (95)
T d1f00i1 27 VMKGDKPV-SNQEVTFTTTL 45 (95)
T ss_dssp EEETTEEC-TTCEEEEEESS
T ss_pred EEECCccc-CCcEEEEEECC
Confidence 45578999 58999998655
No 8
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=15.24 E-value=66 Score=17.71 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=23.1
Q ss_pred eEEeCCccCCCCCeeEEEecC-CCceeeeee
Q 041740 91 CVVNSGFPLSPLQTFSFNYSH-PKYVMQPAT 120 (126)
Q Consensus 91 CLvn~G~pi~~g~~v~F~YA~-~~f~l~p~s 120 (126)
..+.+..++..|++|.|.... ..+-|.+-+
T Consensus 35 ~~~~~~~~~~~g~~i~l~~d~~~~~lFD~~t 65 (70)
T d1v43a2 35 VKLPGHIPIEPGREVKVIMDLDMIHVFDKDT 65 (70)
T ss_dssp EEEESCCCCCTTCEEEEEEEGGGCEEEETTT
T ss_pred EEECCCCCCCCCCEEEEEECcccEEEEcchh
Confidence 446667788899999999988 777776644
No 9
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=15.15 E-value=97 Score=21.17 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=34.4
Q ss_pred CCceeEEEec--CCccccccCccceeeecCCeeEEeC---CccCCCCCeeEEEecC
Q 041740 61 CPVINIHLKC--GNFSQALVNPRLLKVISYNNCVVNS---GFPLSPLQTFSFNYSH 111 (126)
Q Consensus 61 C~~~~V~l~C--~gF~s~~VdP~~fr~~~~~~CLvn~---G~pi~~g~~v~F~YA~ 111 (126)
|.=+-|+|-| .|.++ +|-++|+...+.=++.+ ++|+..-..+-|+--.
T Consensus 70 ~Ygs~V~Lv~~~TGv~s---ppLiIRKVdk~~~~ld~~~~ddpVSQLhK~Af~~~d 122 (161)
T d3brda3 70 YYGSVVKLVDSVTGIAL---PRLRIRKVDKQQVILDASCSEEPVSQLHKCAFQMID 122 (161)
T ss_dssp BTTCEEEEEETTTCCBC---CCEEEEEEETTEEECCTTGGGSBCBTTEEEEEEESS
T ss_pred EeCCEEEEEEcCCCccC---CCEEEEEEcCCeEeccCccCCCcHHhhheeEEEcCC
Confidence 4445688888 56665 88889987655555555 4799998889997654
No 10
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}
Probab=14.85 E-value=30 Score=19.02 Aligned_cols=13 Identities=15% Similarity=0.306 Sum_probs=9.9
Q ss_pred EEEEE-EeCCCCCC
Q 041740 50 FMARV-HNNCPMCP 62 (126)
Q Consensus 50 ~~VtI-~N~C~~C~ 62 (126)
|+|+| .++|.+|-
T Consensus 2 ~ki~vD~~~Ci~Cg 15 (66)
T d1sj1a_ 2 WKVSVDQDTCIGDA 15 (66)
T ss_dssp EEEEECTTTCCCCC
T ss_pred eEEEEeHHHCCCcC
Confidence 88999 68897444
Done!