Query 041741
Match_columns 748
No_of_seqs 562 out of 3451
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 10:10:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4.5E-91 9.7E-96 778.0 72.3 661 3-747 66-730 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3.6E-75 7.8E-80 650.2 57.4 613 2-643 100-727 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.6E-66 3.5E-71 566.4 52.7 479 269-747 84-567 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1.1E-63 2.3E-68 543.9 52.0 533 18-607 365-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.2E-62 2.7E-67 535.5 55.7 527 116-669 366-907 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.2E-61 6.9E-66 524.9 53.7 474 83-641 85-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.8E-39 1.9E-43 369.0 71.1 717 2-735 139-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-38 3.1E-43 367.2 70.9 709 3-740 105-869 (899)
9 PRK11447 cellulose synthase su 100.0 1.6E-26 3.6E-31 265.0 63.5 417 311-741 277-745 (1157)
10 PRK11447 cellulose synthase su 100.0 3.6E-25 7.8E-30 254.0 62.2 642 26-710 31-750 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.2E-24 2.7E-29 237.1 58.5 650 2-736 58-739 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.4E-23 3E-28 228.9 62.4 619 64-738 54-707 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 2.1E-20 4.6E-25 180.1 34.3 440 275-726 51-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 9.6E-21 2.1E-25 182.4 30.2 420 306-736 51-484 (966)
15 KOG2002 TPR-containing nuclear 99.9 7.7E-18 1.7E-22 171.6 49.7 461 269-739 267-800 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.8E-18 6.1E-23 185.2 42.1 418 306-736 130-570 (615)
17 KOG2002 TPR-containing nuclear 99.9 8.4E-17 1.8E-21 164.2 46.2 433 301-739 268-747 (1018)
18 PRK11788 tetratricopeptide rep 99.8 9.1E-19 2E-23 179.7 27.7 268 473-745 72-355 (389)
19 PRK15174 Vi polysaccharide exp 99.8 6.6E-17 1.4E-21 173.5 39.3 345 372-736 45-402 (656)
20 PRK10049 pgaA outer membrane p 99.8 1.7E-16 3.7E-21 174.3 42.5 400 306-739 18-458 (765)
21 PRK15174 Vi polysaccharide exp 99.8 9.1E-17 2E-21 172.4 36.2 353 380-740 16-384 (656)
22 PRK10049 pgaA outer membrane p 99.8 1.7E-15 3.8E-20 166.4 43.3 408 269-712 12-465 (765)
23 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-15 2.7E-20 164.6 40.0 419 275-708 130-576 (615)
24 PRK11788 tetratricopeptide rep 99.8 7.7E-17 1.7E-21 165.5 28.8 300 310-642 42-353 (389)
25 PRK14574 hmsH outer membrane p 99.8 6.8E-15 1.5E-19 158.0 43.1 420 281-709 43-519 (822)
26 KOG4318 Bicoid mRNA stability 99.8 2.3E-14 4.9E-19 144.9 43.0 679 8-742 10-813 (1088)
27 KOG2076 RNA polymerase III tra 99.8 5.3E-14 1.1E-18 143.2 45.5 199 22-221 138-351 (895)
28 KOG4422 Uncharacterized conser 99.8 1.8E-14 4E-19 133.5 37.2 209 86-354 117-328 (625)
29 PRK14574 hmsH outer membrane p 99.8 8.7E-14 1.9E-18 149.6 46.7 430 193-682 41-525 (822)
30 KOG4422 Uncharacterized conser 99.7 4.2E-14 9E-19 131.2 35.2 443 186-669 116-588 (625)
31 KOG2076 RNA polymerase III tra 99.7 9.9E-13 2.1E-17 134.1 45.1 366 368-737 413-849 (895)
32 KOG2003 TPR repeat-containing 99.7 7.3E-14 1.6E-18 130.4 33.9 422 282-725 247-711 (840)
33 KOG0495 HAT repeat protein [RN 99.7 1.9E-11 4.2E-16 119.9 51.7 596 36-734 264-877 (913)
34 KOG4318 Bicoid mRNA stability 99.7 1.3E-13 2.8E-18 139.5 34.4 604 83-735 23-734 (1088)
35 KOG2003 TPR repeat-containing 99.7 1.4E-14 3.1E-19 135.1 25.6 423 308-737 206-689 (840)
36 PF13429 TPR_15: Tetratricopep 99.6 4.9E-16 1.1E-20 150.3 8.9 255 477-736 15-276 (280)
37 KOG0495 HAT repeat protein [RN 99.6 4.2E-10 9.1E-15 110.8 47.6 386 347-738 415-847 (913)
38 PRK10747 putative protoheme IX 99.6 2.1E-12 4.5E-17 130.8 26.8 275 452-736 97-389 (398)
39 KOG0547 Translocase of outer m 99.5 2.4E-11 5.2E-16 115.3 30.4 213 516-734 337-563 (606)
40 KOG1126 DNA-binding cell divis 99.5 8.5E-13 1.8E-17 130.4 20.9 277 454-739 334-622 (638)
41 KOG1155 Anaphase-promoting com 99.5 8.5E-11 1.8E-15 110.9 31.8 315 413-736 173-494 (559)
42 KOG1155 Anaphase-promoting com 99.5 7.6E-11 1.7E-15 111.2 31.3 246 480-733 272-532 (559)
43 KOG1126 DNA-binding cell divis 99.5 7.4E-13 1.6E-17 130.8 18.7 249 485-739 334-588 (638)
44 KOG1915 Cell cycle control pro 99.5 1.7E-09 3.6E-14 102.6 38.2 455 272-736 73-584 (677)
45 TIGR00540 hemY_coli hemY prote 99.5 2.9E-11 6.2E-16 123.4 29.1 280 452-736 97-398 (409)
46 PRK10747 putative protoheme IX 99.5 4.3E-11 9.2E-16 121.3 28.9 152 547-704 236-391 (398)
47 TIGR00540 hemY_coli hemY prote 99.5 1.6E-10 3.5E-15 117.8 31.5 288 380-703 95-399 (409)
48 PF13429 TPR_15: Tetratricopep 99.5 2.3E-13 5.1E-18 131.7 9.7 227 510-739 13-245 (280)
49 KOG1915 Cell cycle control pro 99.4 6.1E-09 1.3E-13 98.9 37.6 231 470-703 322-585 (677)
50 TIGR02521 type_IV_pilW type IV 99.4 2.9E-11 6.3E-16 114.7 21.8 198 539-737 30-232 (234)
51 KOG2047 mRNA splicing factor [ 99.4 8.5E-08 1.8E-12 94.9 44.6 551 122-723 104-709 (835)
52 KOG1173 Anaphase-promoting com 99.4 1.4E-09 2.9E-14 105.8 30.8 275 438-715 243-530 (611)
53 COG3071 HemY Uncharacterized e 99.4 2.5E-09 5.5E-14 99.7 30.4 287 382-703 97-390 (400)
54 KOG0985 Vesicle coat protein c 99.4 2.5E-07 5.5E-12 96.1 47.4 194 13-211 503-749 (1666)
55 KOG1173 Anaphase-promoting com 99.4 2.4E-09 5.2E-14 104.1 31.3 452 271-736 15-517 (611)
56 KOG2047 mRNA splicing factor [ 99.4 9.3E-08 2E-12 94.6 41.8 587 4-664 56-716 (835)
57 KOG3785 Uncharacterized conser 99.4 5.9E-09 1.3E-13 95.1 30.7 153 556-711 339-497 (557)
58 KOG0547 Translocase of outer m 99.4 7.6E-09 1.6E-13 98.7 32.4 218 481-705 337-568 (606)
59 KOG1174 Anaphase-promoting com 99.4 1.2E-08 2.6E-13 95.2 32.9 274 435-714 228-511 (564)
60 COG3071 HemY Uncharacterized e 99.4 1.6E-09 3.4E-14 101.1 27.0 277 452-736 97-389 (400)
61 KOG4162 Predicted calmodulin-b 99.3 2.7E-08 5.8E-13 100.7 36.4 392 334-736 319-782 (799)
62 COG2956 Predicted N-acetylgluc 99.3 2.2E-09 4.8E-14 96.8 25.7 270 382-686 48-327 (389)
63 KOG2376 Signal recognition par 99.3 1.7E-08 3.7E-13 98.8 33.3 434 278-732 18-515 (652)
64 COG2956 Predicted N-acetylgluc 99.3 2E-09 4.3E-14 97.1 24.4 229 512-745 114-355 (389)
65 COG3063 PilF Tfp pilus assembl 99.3 1.8E-10 4E-15 98.9 16.7 160 574-738 38-203 (250)
66 KOG4162 Predicted calmodulin-b 99.3 1.9E-08 4.1E-13 101.7 33.3 428 267-710 318-790 (799)
67 KOG3616 Selective LIM binding 99.3 1.7E-07 3.6E-12 94.0 38.9 343 346-732 740-1129(1636)
68 KOG3616 Selective LIM binding 99.3 3.1E-07 6.7E-12 92.2 40.8 104 545-666 829-932 (1636)
69 KOG1840 Kinesin light chain [C 99.3 1.4E-09 3.1E-14 109.2 23.9 233 504-736 198-478 (508)
70 KOG0985 Vesicle coat protein c 99.3 4.5E-06 9.8E-11 87.2 53.3 144 570-734 1103-1246(1666)
71 KOG1156 N-terminal acetyltrans 99.2 1.5E-06 3.3E-11 86.6 41.5 569 64-737 51-688 (700)
72 KOG3785 Uncharacterized conser 99.2 7.6E-08 1.6E-12 88.1 30.2 148 61-215 29-180 (557)
73 PRK11189 lipoprotein NlpI; Pro 99.2 5.4E-10 1.2E-14 108.2 16.9 116 483-599 39-160 (296)
74 KOG1129 TPR repeat-containing 99.2 7E-10 1.5E-14 99.9 15.4 195 540-737 256-458 (478)
75 PRK12370 invasion protein regu 99.2 5.7E-09 1.2E-13 110.9 24.6 241 486-736 277-534 (553)
76 KOG3617 WD40 and TPR repeat-co 99.2 1.6E-06 3.4E-11 88.5 39.0 146 33-212 738-884 (1416)
77 PF13041 PPR_2: PPR repeat fam 99.2 6.1E-11 1.3E-15 79.1 5.7 50 83-132 1-50 (50)
78 KOG1129 TPR repeat-containing 99.2 1E-09 2.2E-14 98.9 14.9 236 475-715 228-470 (478)
79 KOG1174 Anaphase-promoting com 99.2 6.9E-07 1.5E-11 83.8 33.3 265 468-740 230-503 (564)
80 PF12569 NARP1: NMDA receptor- 99.1 2.2E-07 4.8E-12 95.1 32.1 282 279-566 11-331 (517)
81 PRK12370 invasion protein regu 99.1 5E-09 1.1E-13 111.3 21.2 210 520-736 276-501 (553)
82 KOG2376 Signal recognition par 99.1 9.9E-07 2.1E-11 86.9 34.3 216 92-338 19-258 (652)
83 PF13041 PPR_2: PPR repeat fam 99.1 2.3E-10 4.9E-15 76.4 6.8 50 569-618 1-50 (50)
84 TIGR02521 type_IV_pilW type IV 99.1 1.6E-08 3.4E-13 95.8 21.9 194 509-705 35-234 (234)
85 KOG4340 Uncharacterized conser 99.1 1.6E-07 3.4E-12 84.0 25.8 275 451-734 124-440 (459)
86 KOG1840 Kinesin light chain [C 99.1 9.1E-08 2E-12 96.5 27.2 130 574-703 328-479 (508)
87 KOG1156 N-terminal acetyltrans 99.1 3.3E-06 7.3E-11 84.2 36.6 435 273-734 42-508 (700)
88 KOG1127 TPR repeat-containing 99.1 6.9E-07 1.5E-11 93.2 32.8 343 386-735 800-1173(1238)
89 COG3063 PilF Tfp pilus assembl 99.1 4E-08 8.6E-13 84.8 19.1 191 544-735 39-234 (250)
90 KOG3617 WD40 and TPR repeat-co 99.0 2E-05 4.4E-10 80.7 40.4 94 121-234 913-1006(1416)
91 PRK11189 lipoprotein NlpI; Pro 99.0 1.4E-07 3E-12 91.5 22.5 214 519-739 40-267 (296)
92 KOG0548 Molecular co-chaperone 99.0 5.7E-07 1.2E-11 87.7 25.2 396 311-736 10-454 (539)
93 PF12569 NARP1: NMDA receptor- 99.0 7.1E-07 1.5E-11 91.4 27.2 283 346-668 12-331 (517)
94 PF04733 Coatomer_E: Coatomer 98.9 1.7E-08 3.8E-13 95.9 12.9 246 449-706 11-268 (290)
95 KOG0624 dsRNA-activated protei 98.9 1.3E-06 2.9E-11 79.9 23.8 196 512-713 162-380 (504)
96 PF04733 Coatomer_E: Coatomer 98.9 2.2E-07 4.7E-12 88.4 19.3 221 443-673 39-268 (290)
97 KOG1127 TPR repeat-containing 98.9 8.8E-06 1.9E-10 85.3 31.6 561 100-734 473-1101(1238)
98 KOG1125 TPR repeat-containing 98.8 8.4E-08 1.8E-12 94.1 15.2 214 517-736 297-526 (579)
99 TIGR03302 OM_YfiO outer membra 98.8 2.6E-07 5.6E-12 87.1 17.4 180 539-738 32-233 (235)
100 cd05804 StaR_like StaR_like; a 98.8 7.8E-06 1.7E-10 82.8 28.9 255 479-736 52-335 (355)
101 PRK10370 formate-dependent nit 98.8 4E-07 8.6E-12 81.7 16.7 119 619-739 52-175 (198)
102 KOG4340 Uncharacterized conser 98.7 4.1E-07 9E-12 81.4 14.6 199 543-747 13-217 (459)
103 PRK15359 type III secretion sy 98.7 1.7E-07 3.6E-12 79.5 11.2 120 592-718 14-136 (144)
104 PRK15359 type III secretion sy 98.7 2.3E-07 4.9E-12 78.6 11.6 108 627-739 14-123 (144)
105 KOG0548 Molecular co-chaperone 98.7 5.8E-05 1.3E-09 74.1 28.2 425 280-733 10-485 (539)
106 KOG0624 dsRNA-activated protei 98.7 9.2E-05 2E-09 68.2 27.5 300 344-669 44-368 (504)
107 PRK04841 transcriptional regul 98.7 1.9E-05 4.2E-10 91.0 30.0 257 480-736 462-759 (903)
108 PLN02789 farnesyltranstransfer 98.6 2E-05 4.2E-10 76.3 22.2 212 520-735 52-300 (320)
109 PRK15363 pathogenicity island 98.6 6.5E-07 1.4E-11 73.9 10.1 96 642-737 35-132 (157)
110 PRK15179 Vi polysaccharide bio 98.6 7.2E-06 1.6E-10 87.6 20.6 132 602-736 82-216 (694)
111 KOG1070 rRNA processing protei 98.5 6.8E-06 1.5E-10 89.1 19.8 199 537-739 1455-1665(1710)
112 KOG3060 Uncharacterized conser 98.5 6.9E-06 1.5E-10 72.3 15.7 166 544-712 56-229 (289)
113 cd05804 StaR_like StaR_like; a 98.5 1.5E-05 3.2E-10 80.8 21.1 92 611-705 119-217 (355)
114 PRK10370 formate-dependent nit 98.5 1.2E-05 2.6E-10 72.3 17.3 154 547-712 23-182 (198)
115 TIGR02552 LcrH_SycD type III s 98.5 1.7E-06 3.8E-11 73.2 11.1 93 644-736 19-113 (135)
116 KOG1125 TPR repeat-containing 98.5 2.4E-05 5.2E-10 77.4 19.5 243 416-693 297-561 (579)
117 COG5010 TadD Flp pilus assembl 98.4 1.3E-05 2.7E-10 71.4 15.8 160 570-733 66-227 (257)
118 PRK04841 transcriptional regul 98.4 0.00044 9.4E-09 80.0 33.5 359 348-708 351-765 (903)
119 COG5010 TadD Flp pilus assembl 98.4 2.4E-05 5.3E-10 69.7 17.2 154 544-700 70-228 (257)
120 PF12854 PPR_1: PPR repeat 98.4 3E-07 6.6E-12 54.6 3.7 33 150-182 2-34 (34)
121 KOG3081 Vesicle coat complex C 98.4 0.00021 4.6E-09 63.8 22.4 155 547-708 115-276 (299)
122 PF12854 PPR_1: PPR repeat 98.4 1.9E-07 4.1E-12 55.5 2.5 34 17-50 1-34 (34)
123 KOG1070 rRNA processing protei 98.4 8.2E-05 1.8E-09 81.1 23.3 232 504-736 1457-1699(1710)
124 KOG1128 Uncharacterized conser 98.4 1.4E-05 3.1E-10 81.1 16.7 232 434-683 393-632 (777)
125 PLN02789 farnesyltranstransfer 98.4 1.6E-05 3.5E-10 76.8 16.8 188 546-737 43-250 (320)
126 TIGR03302 OM_YfiO outer membra 98.4 2.1E-05 4.5E-10 74.2 16.9 183 502-705 30-234 (235)
127 KOG1128 Uncharacterized conser 98.3 2.2E-05 4.8E-10 79.8 16.7 185 543-736 427-615 (777)
128 KOG3060 Uncharacterized conser 98.3 0.00013 2.9E-09 64.4 18.3 182 483-669 25-218 (289)
129 COG4783 Putative Zn-dependent 98.3 9.3E-05 2E-09 72.1 19.0 113 617-732 317-432 (484)
130 PRK14720 transcript cleavage f 98.3 0.00028 6.2E-09 76.4 24.4 148 542-720 118-269 (906)
131 COG4783 Putative Zn-dependent 98.3 0.00011 2.3E-09 71.7 18.9 140 578-738 313-455 (484)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 1.4E-05 2.9E-10 78.8 12.6 121 609-734 172-294 (395)
133 KOG1914 mRNA cleavage and poly 98.2 0.0084 1.8E-07 59.5 34.0 182 486-668 347-536 (656)
134 PRK15179 Vi polysaccharide bio 98.2 0.00021 4.6E-09 76.6 20.8 131 570-705 85-219 (694)
135 TIGR02552 LcrH_SycD type III s 98.2 3E-05 6.4E-10 65.6 11.8 116 593-712 5-123 (135)
136 KOG2053 Mitochondrial inherita 98.2 0.016 3.5E-07 61.3 40.0 225 98-333 22-256 (932)
137 PF09976 TPR_21: Tetratricopep 98.2 3.7E-05 7.9E-10 65.6 12.2 114 619-733 24-143 (145)
138 KOG3081 Vesicle coat complex C 98.2 0.00023 5.1E-09 63.5 17.0 244 477-736 15-270 (299)
139 PF13414 TPR_11: TPR repeat; P 98.1 4.4E-06 9.5E-11 60.6 5.1 64 673-736 2-66 (69)
140 KOG2053 Mitochondrial inherita 98.1 0.019 4.2E-07 60.7 36.0 67 676-742 438-507 (932)
141 COG4235 Cytochrome c biogenesi 98.1 4.1E-05 8.9E-10 70.2 11.6 106 638-743 152-262 (287)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8.8E-05 1.9E-09 73.2 14.4 125 541-669 170-295 (395)
143 cd00189 TPR Tetratricopeptide 98.1 2.8E-05 6E-10 61.2 9.3 93 645-737 3-97 (100)
144 PF13432 TPR_16: Tetratricopep 98.1 7.1E-06 1.5E-10 58.6 5.0 60 680-739 3-62 (65)
145 TIGR02795 tol_pal_ybgF tol-pal 98.1 4.7E-05 1E-09 62.7 10.5 93 645-737 5-105 (119)
146 PF09976 TPR_21: Tetratricopep 98.0 0.00026 5.7E-09 60.3 15.0 125 574-701 15-145 (145)
147 PF12895 Apc3: Anaphase-promot 98.0 2.2E-06 4.7E-11 65.0 1.9 78 655-733 2-83 (84)
148 PRK15331 chaperone protein Sic 98.0 6.3E-05 1.4E-09 62.6 9.6 90 647-736 42-133 (165)
149 PLN03088 SGT1, suppressor of 98.0 4.9E-05 1.1E-09 75.6 10.3 108 611-721 7-117 (356)
150 TIGR00756 PPR pentatricopeptid 97.9 1.7E-05 3.6E-10 48.2 4.4 35 86-120 1-35 (35)
151 TIGR00756 PPR pentatricopeptid 97.9 1.8E-05 3.9E-10 48.1 4.4 35 187-221 1-35 (35)
152 KOG0553 TPR repeat-containing 97.9 3.6E-05 7.9E-10 70.0 7.9 105 613-720 88-195 (304)
153 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.3E-10 47.4 4.3 33 187-219 2-34 (34)
154 COG4700 Uncharacterized protei 97.9 0.00072 1.6E-08 56.8 14.2 132 602-735 85-220 (251)
155 PF13812 PPR_3: Pentatricopept 97.9 2.4E-05 5.1E-10 47.1 4.3 33 86-118 2-34 (34)
156 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00015 3.3E-09 59.7 10.6 105 608-712 4-114 (119)
157 COG3898 Uncharacterized membra 97.9 0.025 5.4E-07 53.9 25.2 270 452-736 97-391 (531)
158 KOG0550 Molecular chaperone (D 97.9 0.00042 9.1E-09 65.9 13.8 164 570-737 167-350 (486)
159 COG4700 Uncharacterized protei 97.8 0.00043 9.3E-09 58.0 11.9 106 634-739 81-191 (251)
160 PF13371 TPR_9: Tetratricopept 97.8 6.3E-05 1.4E-09 55.2 6.3 58 682-739 3-60 (73)
161 PRK02603 photosystem I assembl 97.8 0.00016 3.5E-09 63.8 10.0 81 643-723 36-121 (172)
162 PF04840 Vps16_C: Vps16, C-ter 97.8 0.043 9.2E-07 53.3 29.1 108 543-667 180-287 (319)
163 PF14559 TPR_19: Tetratricopep 97.8 2.1E-05 4.5E-10 56.9 3.2 54 685-738 2-55 (68)
164 CHL00033 ycf3 photosystem I as 97.8 0.00011 2.4E-09 64.6 8.4 93 642-734 35-139 (168)
165 PRK14720 transcript cleavage f 97.8 0.11 2.4E-06 57.2 40.7 246 8-314 15-268 (906)
166 PF13432 TPR_16: Tetratricopep 97.7 5.3E-05 1.1E-09 54.0 4.7 61 648-708 3-65 (65)
167 KOG0553 TPR repeat-containing 97.7 0.00016 3.5E-09 65.9 8.6 101 578-682 88-190 (304)
168 PLN03088 SGT1, suppressor of 97.7 0.00032 7E-09 69.8 11.2 94 576-673 7-102 (356)
169 PRK10153 DNA-binding transcrip 97.6 0.00072 1.6E-08 70.3 13.3 59 675-734 421-479 (517)
170 PF13431 TPR_17: Tetratricopep 97.6 2.8E-05 6E-10 46.1 1.7 33 697-729 2-34 (34)
171 PRK02603 photosystem I assembl 97.6 0.0011 2.4E-08 58.5 12.1 129 570-722 34-165 (172)
172 PF07079 DUF1347: Protein of u 97.5 0.11 2.4E-06 50.9 33.6 49 582-632 473-521 (549)
173 PF12895 Apc3: Anaphase-promot 97.5 0.00024 5.2E-09 53.8 5.8 80 584-667 2-83 (84)
174 PF01535 PPR: PPR repeat; Int 97.5 0.00014 3.1E-09 42.4 3.6 31 187-217 1-31 (31)
175 PF14559 TPR_19: Tetratricopep 97.5 8.5E-05 1.8E-09 53.6 2.9 61 654-714 3-65 (68)
176 PRK10153 DNA-binding transcrip 97.5 0.0037 8E-08 65.2 15.8 139 569-709 335-488 (517)
177 PF07079 DUF1347: Protein of u 97.5 0.13 2.9E-06 50.3 32.3 236 491-734 246-521 (549)
178 PF01535 PPR: PPR repeat; Int 97.5 0.00017 3.7E-09 42.1 3.4 31 86-116 1-31 (31)
179 PF14938 SNAP: Soluble NSF att 97.5 0.0027 5.9E-08 61.2 13.6 158 574-733 78-262 (282)
180 cd00189 TPR Tetratricopeptide 97.4 0.00097 2.1E-08 52.1 8.9 91 612-705 6-99 (100)
181 PF13414 TPR_11: TPR repeat; P 97.4 0.00033 7.2E-09 50.6 5.3 64 642-705 3-69 (69)
182 KOG1914 mRNA cleavage and poly 97.4 0.18 3.9E-06 50.5 34.8 123 441-566 368-498 (656)
183 KOG1538 Uncharacterized conser 97.4 0.039 8.6E-07 56.0 20.6 52 608-669 749-800 (1081)
184 PF13281 DUF4071: Domain of un 97.4 0.037 8.1E-07 54.1 19.9 159 545-706 146-337 (374)
185 PF13428 TPR_14: Tetratricopep 97.4 0.00027 5.7E-09 45.3 3.7 43 674-716 1-43 (44)
186 PRK10803 tol-pal system protei 97.4 0.0014 3.1E-08 61.4 10.1 91 617-707 154-250 (263)
187 PRK10866 outer membrane biogen 97.3 0.013 2.8E-07 54.7 16.2 56 680-735 181-239 (243)
188 PF05843 Suf: Suppressor of fo 97.3 0.0059 1.3E-07 58.6 14.3 134 572-708 2-141 (280)
189 PF12688 TPR_5: Tetratrico pep 97.3 0.0015 3.3E-08 52.4 8.5 86 648-733 7-100 (120)
190 PF04840 Vps16_C: Vps16, C-ter 97.3 0.18 3.9E-06 49.0 27.3 105 276-392 181-285 (319)
191 PF08579 RPM2: Mitochondrial r 97.3 0.0027 5.7E-08 48.8 8.9 78 90-167 30-116 (120)
192 CHL00033 ycf3 photosystem I as 97.3 0.0036 7.9E-08 55.0 11.5 62 572-633 36-99 (168)
193 PRK15363 pathogenicity island 97.3 0.0069 1.5E-07 50.5 12.1 95 545-640 40-137 (157)
194 KOG1130 Predicted G-alpha GTPa 97.3 0.0011 2.3E-08 63.0 8.0 257 480-736 27-343 (639)
195 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0011 2.4E-08 65.2 8.2 63 674-736 75-140 (453)
196 PF14938 SNAP: Soluble NSF att 97.2 0.0036 7.8E-08 60.4 11.8 159 577-736 41-224 (282)
197 PF13371 TPR_9: Tetratricopept 97.2 0.00075 1.6E-08 49.4 5.6 67 649-715 2-70 (73)
198 PRK10803 tol-pal system protei 97.2 0.0042 9.1E-08 58.3 11.4 95 645-739 146-248 (263)
199 PF10037 MRP-S27: Mitochondria 97.2 0.0067 1.4E-07 60.5 12.9 120 500-619 61-186 (429)
200 KOG1538 Uncharacterized conser 97.1 0.15 3.3E-06 52.0 21.4 101 557-669 733-844 (1081)
201 PF10037 MRP-S27: Mitochondria 97.1 0.0061 1.3E-07 60.8 11.8 120 115-234 61-186 (429)
202 KOG2796 Uncharacterized conser 97.1 0.025 5.3E-07 50.8 13.9 136 573-708 179-320 (366)
203 KOG2796 Uncharacterized conser 97.0 0.065 1.4E-06 48.2 15.3 146 588-741 166-319 (366)
204 KOG2041 WD40 repeat protein [G 96.9 0.66 1.4E-05 48.1 26.7 62 571-632 1021-1083(1189)
205 PRK11906 transcriptional regul 96.9 0.0087 1.9E-07 59.2 10.8 142 586-731 273-430 (458)
206 PF13525 YfiO: Outer membrane 96.9 0.037 8E-07 50.3 14.3 50 680-729 147-199 (203)
207 COG4105 ComL DNA uptake lipopr 96.9 0.26 5.7E-06 44.9 18.9 58 680-737 173-233 (254)
208 PF13512 TPR_18: Tetratricopep 96.9 0.024 5.2E-07 46.5 11.3 92 647-738 15-129 (142)
209 PF05843 Suf: Suppressor of fo 96.9 0.0075 1.6E-07 57.9 10.0 129 607-737 2-136 (280)
210 PF12688 TPR_5: Tetratrico pep 96.8 0.028 6E-07 45.3 11.4 93 576-668 6-101 (120)
211 PF13424 TPR_12: Tetratricopep 96.8 0.0012 2.7E-08 49.0 3.5 61 675-735 6-73 (78)
212 PRK10866 outer membrane biogen 96.8 0.18 3.9E-06 47.1 18.1 57 476-534 38-98 (243)
213 PF08579 RPM2: Mitochondrial r 96.8 0.024 5.2E-07 43.8 9.7 78 475-552 30-116 (120)
214 PF06239 ECSIT: Evolutionarily 96.8 0.0087 1.9E-07 52.5 8.4 96 74-169 34-152 (228)
215 KOG0543 FKBP-type peptidyl-pro 96.7 0.015 3.2E-07 56.1 10.5 138 577-736 214-354 (397)
216 KOG4555 TPR repeat-containing 96.7 0.012 2.6E-07 46.4 7.8 91 649-739 50-146 (175)
217 KOG0543 FKBP-type peptidyl-pro 96.7 0.006 1.3E-07 58.6 7.5 90 649-738 215-321 (397)
218 KOG1130 Predicted G-alpha GTPa 96.6 0.0045 9.8E-08 59.0 6.1 221 513-733 25-300 (639)
219 COG3898 Uncharacterized membra 96.6 0.76 1.7E-05 44.3 26.8 277 382-669 97-390 (531)
220 PF13525 YfiO: Outer membrane 96.6 0.049 1.1E-06 49.5 12.5 142 574-737 8-170 (203)
221 PF03704 BTAD: Bacterial trans 96.6 0.0051 1.1E-07 52.6 5.8 68 676-743 64-136 (146)
222 KOG0550 Molecular chaperone (D 96.5 0.68 1.5E-05 45.0 19.8 226 503-732 166-438 (486)
223 PF06239 ECSIT: Evolutionarily 96.5 0.042 9E-07 48.4 10.8 90 568-658 44-154 (228)
224 COG4235 Cytochrome c biogenesi 96.4 0.076 1.7E-06 49.4 12.7 108 603-712 153-265 (287)
225 COG1729 Uncharacterized protei 96.4 0.022 4.8E-07 52.1 8.8 102 608-710 144-251 (262)
226 KOG2280 Vacuolar assembly/sort 96.4 1.8 3.8E-05 45.8 29.7 108 607-730 685-792 (829)
227 PF04184 ST7: ST7 protein; In 96.3 0.26 5.6E-06 49.3 16.2 120 610-730 263-407 (539)
228 COG1729 Uncharacterized protei 96.3 0.025 5.5E-07 51.8 8.8 97 644-741 144-248 (262)
229 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1.3 2.9E-05 43.6 27.3 76 269-346 39-117 (660)
230 PRK11619 lytic murein transgly 96.1 2.7 5.8E-05 45.7 31.0 56 444-500 104-159 (644)
231 KOG4234 TPR repeat-containing 96.0 0.024 5.3E-07 48.5 6.6 90 649-738 102-198 (271)
232 KOG2041 WD40 repeat protein [G 96.0 2.5 5.5E-05 44.1 24.7 125 351-493 747-875 (1189)
233 KOG1585 Protein required for f 96.0 0.75 1.6E-05 41.3 15.7 86 645-731 153-250 (308)
234 KOG1941 Acetylcholine receptor 95.9 0.069 1.5E-06 50.4 9.9 124 612-735 128-273 (518)
235 COG3118 Thioredoxin domain-con 95.9 0.35 7.6E-06 44.9 14.2 117 616-735 144-263 (304)
236 PF13424 TPR_12: Tetratricopep 95.9 0.022 4.8E-07 42.2 5.6 60 644-703 7-75 (78)
237 COG0457 NrfG FOG: TPR repeat [ 95.8 1.7 3.6E-05 40.8 24.8 190 542-735 61-263 (291)
238 PF07719 TPR_2: Tetratricopept 95.8 0.024 5.2E-07 33.6 4.5 33 675-707 2-34 (34)
239 PF03704 BTAD: Bacterial trans 95.7 0.1 2.3E-06 44.5 9.6 72 573-645 64-139 (146)
240 PF00515 TPR_1: Tetratricopept 95.6 0.023 5.1E-07 33.7 3.8 32 675-706 2-33 (34)
241 KOG2114 Vacuolar assembly/sort 95.6 4.3 9.3E-05 43.7 24.5 174 277-467 339-518 (933)
242 KOG1258 mRNA processing protei 95.6 3.5 7.5E-05 42.6 27.3 181 539-722 296-489 (577)
243 COG3118 Thioredoxin domain-con 95.5 1.1 2.3E-05 41.9 15.6 150 579-730 142-294 (304)
244 PRK15331 chaperone protein Sic 95.5 0.28 6.1E-06 41.4 11.1 86 581-669 47-132 (165)
245 PRK11906 transcriptional regul 95.4 0.51 1.1E-05 47.2 14.3 145 555-704 273-437 (458)
246 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.51 1.1E-05 47.2 14.1 62 539-600 74-141 (453)
247 PF08631 SPO22: Meiosis protei 95.3 3 6.5E-05 40.2 23.4 99 507-606 86-192 (278)
248 PF02259 FAT: FAT domain; Int 95.3 2.1 4.6E-05 43.1 19.2 150 569-721 144-305 (352)
249 PF09205 DUF1955: Domain of un 95.2 1.2 2.5E-05 35.8 12.7 141 581-740 12-152 (161)
250 PF13512 TPR_18: Tetratricopep 95.0 0.54 1.2E-05 38.8 10.8 118 576-710 15-135 (142)
251 PF12921 ATP13: Mitochondrial 94.8 0.34 7.5E-06 39.5 9.5 49 602-650 48-96 (126)
252 TIGR02561 HrpB1_HrpK type III 94.7 0.18 3.9E-06 41.5 7.4 53 686-738 22-74 (153)
253 KOG0890 Protein kinase of the 94.7 6.3 0.00014 47.9 22.2 311 412-738 1391-1732(2382)
254 COG4785 NlpI Lipoprotein NlpI, 94.7 2.3 5.1E-05 37.5 14.3 162 570-737 98-266 (297)
255 KOG4555 TPR repeat-containing 94.6 0.09 2E-06 41.7 5.3 54 683-736 52-105 (175)
256 PF09613 HrpB1_HrpK: Bacterial 94.6 0.18 4E-06 42.3 7.4 73 653-725 21-95 (160)
257 PF10300 DUF3808: Protein of u 94.5 0.36 7.8E-06 50.2 11.1 161 571-735 188-367 (468)
258 KOG2610 Uncharacterized conser 94.5 1.2 2.7E-05 41.9 13.0 46 554-599 117-165 (491)
259 KOG1586 Protein required for f 94.4 2.8 6E-05 37.6 14.4 18 688-705 209-226 (288)
260 PF13176 TPR_7: Tetratricopept 94.4 0.057 1.2E-06 32.5 3.2 26 710-735 1-26 (36)
261 smart00299 CLH Clathrin heavy 94.3 1.6 3.5E-05 36.8 13.0 85 576-669 12-96 (140)
262 PF10300 DUF3808: Protein of u 94.3 1.5 3.2E-05 45.8 15.0 157 543-701 191-367 (468)
263 PF13281 DUF4071: Domain of un 94.2 2.3 4.9E-05 42.1 15.1 163 574-737 144-334 (374)
264 PF09205 DUF1955: Domain of un 94.2 2.4 5.2E-05 34.1 12.6 136 380-536 13-151 (161)
265 KOG1920 IkappaB kinase complex 94.1 12 0.00025 42.4 21.3 115 546-673 914-1030(1265)
266 COG0457 NrfG FOG: TPR repeat [ 94.1 5.1 0.00011 37.3 24.2 197 505-706 59-268 (291)
267 KOG2280 Vacuolar assembly/sort 94.1 9.8 0.00021 40.6 37.6 339 267-666 427-794 (829)
268 KOG3941 Intermediate in Toll s 94.1 0.37 7.9E-06 44.1 8.6 98 74-171 54-174 (406)
269 PF12921 ATP13: Mitochondrial 93.9 0.54 1.2E-05 38.4 8.8 48 501-548 48-96 (126)
270 PF09613 HrpB1_HrpK: Bacterial 93.9 2 4.4E-05 36.3 12.1 97 617-717 21-119 (160)
271 PF13428 TPR_14: Tetratricopep 93.4 0.12 2.6E-06 32.9 3.4 32 708-739 1-32 (44)
272 PF13181 TPR_8: Tetratricopept 93.3 0.14 3.1E-06 30.2 3.5 31 676-706 3-33 (34)
273 smart00299 CLH Clathrin heavy 93.3 3.9 8.5E-05 34.4 13.6 63 610-685 73-136 (140)
274 KOG1258 mRNA processing protei 93.2 12 0.00026 38.9 25.3 141 339-480 46-192 (577)
275 COG2976 Uncharacterized protei 93.2 5 0.00011 35.1 13.4 114 589-705 70-190 (207)
276 KOG3941 Intermediate in Toll s 93.0 1.2 2.6E-05 41.0 10.1 99 560-659 54-175 (406)
277 PF04053 Coatomer_WDAD: Coatom 92.9 1.3 2.9E-05 45.4 11.7 130 26-180 298-427 (443)
278 KOG2114 Vacuolar assembly/sort 92.8 17 0.00037 39.5 27.7 54 545-598 710-763 (933)
279 COG4649 Uncharacterized protei 92.7 1.9 4.1E-05 36.6 10.1 142 570-713 58-205 (221)
280 COG4649 Uncharacterized protei 92.7 5.7 0.00012 33.9 14.7 119 550-669 68-194 (221)
281 PF00637 Clathrin: Region in C 92.6 0.019 4.1E-07 48.9 -1.6 83 511-596 13-95 (143)
282 COG3629 DnrI DNA-binding trans 92.6 0.47 1E-05 44.5 7.3 59 678-736 157-215 (280)
283 PF04053 Coatomer_WDAD: Coatom 92.5 3.1 6.7E-05 42.8 13.8 132 508-669 298-429 (443)
284 PF07721 TPR_4: Tetratricopept 92.5 0.13 2.8E-06 28.1 2.2 24 709-732 2-25 (26)
285 COG2976 Uncharacterized protei 92.2 2.5 5.4E-05 36.8 10.5 91 647-738 94-189 (207)
286 KOG2066 Vacuolar assembly/sort 92.1 20 0.00043 38.7 22.7 72 611-694 639-710 (846)
287 PF07719 TPR_2: Tetratricopept 92.0 0.16 3.4E-06 30.0 2.4 29 709-737 2-30 (34)
288 KOG4648 Uncharacterized conser 91.8 0.3 6.5E-06 45.9 5.0 96 611-709 102-200 (536)
289 PRK09687 putative lyase; Provi 91.8 13 0.00028 35.8 23.3 71 270-345 204-274 (280)
290 PF04097 Nic96: Nup93/Nic96; 91.8 16 0.00035 39.8 18.8 47 370-417 112-158 (613)
291 PF13174 TPR_6: Tetratricopept 91.6 0.2 4.4E-06 29.2 2.6 29 710-738 2-30 (33)
292 PF13176 TPR_7: Tetratricopept 91.4 0.35 7.5E-06 29.1 3.4 27 677-703 2-28 (36)
293 KOG2610 Uncharacterized conser 91.3 1.7 3.7E-05 41.1 9.2 158 582-742 114-281 (491)
294 PF11207 DUF2989: Protein of u 91.2 2.8 6E-05 37.0 9.9 75 652-728 117-198 (203)
295 PF07035 Mic1: Colon cancer-as 91.2 9.1 0.0002 33.0 14.8 40 260-299 17-56 (167)
296 KOG1308 Hsp70-interacting prot 91.2 0.13 2.8E-06 48.5 2.0 87 654-740 126-214 (377)
297 KOG1941 Acetylcholine receptor 91.1 15 0.00033 35.5 17.6 54 511-564 128-186 (518)
298 PF00515 TPR_1: Tetratricopept 91.1 0.23 5E-06 29.3 2.4 29 709-737 2-30 (34)
299 KOG4642 Chaperone-dependent E3 91.0 0.5 1.1E-05 42.2 5.3 85 651-735 19-105 (284)
300 PF04184 ST7: ST7 protein; In 90.7 9.3 0.0002 38.8 14.1 75 540-614 259-339 (539)
301 KOG1464 COP9 signalosome, subu 90.4 14 0.00031 34.0 16.5 180 475-656 70-286 (440)
302 COG4785 NlpI Lipoprotein NlpI, 90.3 2.6 5.6E-05 37.3 8.8 111 616-732 75-190 (297)
303 PF14853 Fis1_TPR_C: Fis1 C-te 90.1 0.7 1.5E-05 30.6 4.2 37 678-714 5-41 (53)
304 PF13174 TPR_6: Tetratricopept 89.6 0.68 1.5E-05 26.9 3.6 31 677-707 3-33 (33)
305 COG5107 RNA14 Pre-mRNA 3'-end 89.3 26 0.00056 35.2 33.2 68 84-152 41-108 (660)
306 KOG4648 Uncharacterized conser 89.2 0.95 2.1E-05 42.8 5.9 93 577-673 103-197 (536)
307 PF13181 TPR_8: Tetratricopept 88.7 0.63 1.4E-05 27.3 3.1 28 709-736 2-29 (34)
308 PF00637 Clathrin: Region in C 88.6 0.1 2.3E-06 44.3 -0.7 84 126-212 13-96 (143)
309 COG3947 Response regulator con 88.6 22 0.00047 33.4 13.7 58 679-736 284-341 (361)
310 PRK10941 hypothetical protein; 88.5 2 4.3E-05 40.6 7.6 62 678-739 185-246 (269)
311 COG3629 DnrI DNA-binding trans 88.5 4.3 9.4E-05 38.3 9.7 79 572-651 154-236 (280)
312 PF14561 TPR_20: Tetratricopep 88.3 1 2.2E-05 34.1 4.6 54 672-725 20-75 (90)
313 KOG2066 Vacuolar assembly/sort 88.2 42 0.00092 36.4 23.0 25 372-396 508-532 (846)
314 PRK09687 putative lyase; Provi 88.2 25 0.00055 33.8 26.3 25 680-705 241-265 (280)
315 PF13170 DUF4003: Protein of u 88.2 11 0.00025 36.3 12.7 68 588-656 160-231 (297)
316 COG4105 ComL DNA uptake lipopr 88.1 22 0.00047 32.9 17.8 62 647-708 172-238 (254)
317 PF06552 TOM20_plant: Plant sp 88.1 0.77 1.7E-05 39.4 4.1 29 692-720 53-81 (186)
318 PF04910 Tcf25: Transcriptiona 88.0 8.8 0.00019 38.4 12.2 70 678-747 107-182 (360)
319 PF02259 FAT: FAT domain; Int 87.9 32 0.00069 34.6 18.7 54 477-534 5-58 (352)
320 PF04097 Nic96: Nup93/Nic96; 87.8 46 0.001 36.4 19.1 28 651-678 514-542 (613)
321 PF13170 DUF4003: Protein of u 87.8 28 0.0006 33.8 16.9 134 385-548 78-225 (297)
322 KOG1920 IkappaB kinase complex 87.8 57 0.0012 37.4 24.7 149 454-630 895-1050(1265)
323 COG4455 ImpE Protein of avirul 87.7 15 0.00033 32.8 11.6 126 574-707 4-138 (273)
324 KOG1586 Protein required for f 87.7 21 0.00046 32.3 12.7 144 479-633 23-181 (288)
325 KOG2063 Vacuolar assembly/sort 87.7 51 0.0011 37.0 18.3 28 472-499 506-533 (877)
326 KOG1585 Protein required for f 87.6 21 0.00044 32.7 12.6 166 547-733 38-215 (308)
327 PF10602 RPN7: 26S proteasome 87.5 5.9 0.00013 34.8 9.6 97 573-669 38-140 (177)
328 KOG4234 TPR repeat-containing 87.3 7.3 0.00016 34.1 9.4 32 683-714 177-208 (271)
329 PF07035 Mic1: Colon cancer-as 87.2 18 0.0004 31.1 15.1 40 323-362 14-53 (167)
330 KOG0545 Aryl-hydrocarbon recep 87.0 8.8 0.00019 34.8 10.0 57 680-736 236-292 (329)
331 COG2909 MalT ATP-dependent tra 87.0 54 0.0012 36.3 22.3 51 582-632 469-523 (894)
332 PF08631 SPO22: Meiosis protei 86.6 32 0.00068 33.2 24.6 18 315-332 5-22 (278)
333 PF13374 TPR_10: Tetratricopep 86.5 0.98 2.1E-05 28.0 3.2 28 709-736 3-30 (42)
334 PRK15180 Vi polysaccharide bio 86.4 6.8 0.00015 39.2 9.9 142 578-723 296-442 (831)
335 COG4455 ImpE Protein of avirul 86.2 2.6 5.6E-05 37.4 6.3 66 644-709 3-70 (273)
336 smart00028 TPR Tetratricopepti 86.1 1.5 3.2E-05 24.8 3.7 27 679-705 6-32 (34)
337 TIGR02561 HrpB1_HrpK type III 85.9 4.8 0.0001 33.5 7.3 93 607-705 8-108 (153)
338 TIGR03504 FimV_Cterm FimV C-te 85.7 1.5 3.2E-05 27.8 3.4 26 712-737 3-28 (44)
339 PRK12798 chemotaxis protein; R 85.0 45 0.00098 33.5 22.0 179 553-734 125-321 (421)
340 PF10602 RPN7: 26S proteasome 84.5 7.7 0.00017 34.1 8.8 60 87-146 38-99 (177)
341 PF02284 COX5A: Cytochrome c o 84.1 15 0.00033 28.2 8.6 60 589-650 28-87 (108)
342 COG1747 Uncharacterized N-term 84.0 55 0.0012 33.6 20.7 173 539-718 65-249 (711)
343 KOG4507 Uncharacterized conser 83.8 2.4 5.3E-05 43.3 5.8 128 590-719 592-721 (886)
344 KOG0890 Protein kinase of the 83.6 1.3E+02 0.0028 37.7 26.8 108 607-718 1671-1799(2382)
345 PF10345 Cohesin_load: Cohesin 83.1 78 0.0017 34.8 33.4 194 18-214 25-253 (608)
346 KOG1550 Extracellular protein 83.1 52 0.0011 35.5 15.9 79 657-737 343-426 (552)
347 cd00923 Cyt_c_Oxidase_Va Cytoc 82.4 9.6 0.00021 28.9 7.0 63 100-163 22-84 (103)
348 cd00923 Cyt_c_Oxidase_Va Cytoc 81.9 9.5 0.00021 28.9 6.8 59 589-649 25-83 (103)
349 PF09986 DUF2225: Uncharacteri 81.6 5.4 0.00012 36.3 6.8 63 675-737 119-194 (214)
350 PF02284 COX5A: Cytochrome c o 80.2 9.3 0.0002 29.3 6.3 60 103-163 28-87 (108)
351 KOG1464 COP9 signalosome, subu 79.8 52 0.0011 30.6 16.0 181 482-662 39-251 (440)
352 PF09670 Cas_Cas02710: CRISPR- 79.8 26 0.00056 35.5 11.6 18 583-600 143-160 (379)
353 KOG2422 Uncharacterized conser 79.1 28 0.00061 36.2 11.2 106 642-747 284-418 (665)
354 KOG0551 Hsp90 co-chaperone CNS 79.0 12 0.00026 35.8 8.0 91 643-733 82-178 (390)
355 KOG3364 Membrane protein invol 79.0 15 0.00032 30.1 7.4 74 639-712 29-109 (149)
356 PF13374 TPR_10: Tetratricopep 78.0 5.7 0.00012 24.4 4.3 27 573-599 4-30 (42)
357 smart00028 TPR Tetratricopepti 77.5 3.6 7.9E-05 23.0 3.2 28 709-736 2-29 (34)
358 KOG0376 Serine-threonine phosp 77.4 2.1 4.5E-05 42.9 3.0 82 652-733 14-97 (476)
359 KOG0276 Vesicle coat complex C 76.6 25 0.00055 36.7 10.1 81 472-567 668-748 (794)
360 PF10345 Cohesin_load: Cohesin 76.5 1.3E+02 0.0027 33.2 38.0 49 687-735 547-604 (608)
361 COG5159 RPN6 26S proteasome re 76.1 67 0.0014 30.2 11.7 199 476-702 9-234 (421)
362 KOG4507 Uncharacterized conser 76.1 12 0.00027 38.6 7.8 134 603-739 568-707 (886)
363 PF13431 TPR_17: Tetratricopep 76.0 3.6 7.9E-05 24.2 2.7 20 642-661 13-32 (34)
364 TIGR02508 type_III_yscG type I 75.2 26 0.00056 26.9 7.3 78 136-216 21-98 (115)
365 KOG2471 TPR repeat-containing 75.1 1E+02 0.0022 31.6 13.8 63 680-745 212-274 (696)
366 PHA02875 ankyrin repeat protei 74.5 52 0.0011 34.0 12.7 199 9-220 16-229 (413)
367 PF13762 MNE1: Mitochondrial s 74.1 46 0.001 27.9 9.5 80 342-421 43-132 (145)
368 PF11207 DUF2989: Protein of u 73.7 27 0.00059 31.0 8.5 74 486-560 122-198 (203)
369 KOG1550 Extracellular protein 73.0 1.4E+02 0.0031 32.2 24.1 77 657-736 454-537 (552)
370 KOG2581 26S proteasome regulat 72.9 1.1E+02 0.0023 30.7 12.8 94 614-707 177-280 (493)
371 COG0790 FOG: TPR repeat, SEL1 72.9 95 0.0021 30.1 17.9 82 517-601 53-143 (292)
372 KOG0276 Vesicle coat complex C 72.6 35 0.00076 35.7 10.0 104 548-669 645-748 (794)
373 PRK10941 hypothetical protein; 72.3 20 0.00043 34.1 8.0 71 645-715 184-256 (269)
374 PF12862 Apc5: Anaphase-promot 71.9 12 0.00027 28.6 5.5 53 684-736 8-69 (94)
375 KOG4570 Uncharacterized conser 71.0 56 0.0012 31.2 10.1 139 10-150 7-165 (418)
376 PF07720 TPR_3: Tetratricopept 70.6 15 0.00033 22.0 4.4 28 678-705 5-34 (36)
377 KOG2471 TPR repeat-containing 69.9 1E+02 0.0022 31.7 12.1 42 680-721 341-382 (696)
378 KOG3824 Huntingtin interacting 69.7 9.5 0.00021 35.8 5.0 64 652-715 126-191 (472)
379 KOG4570 Uncharacterized conser 69.0 11 0.00025 35.5 5.4 96 267-363 59-160 (418)
380 KOG2034 Vacuolar sorting prote 68.8 2E+02 0.0043 32.2 18.6 173 29-211 364-555 (911)
381 PF10579 Rapsyn_N: Rapsyn N-te 68.7 12 0.00026 27.2 4.2 46 583-628 18-65 (80)
382 KOG3364 Membrane protein invol 68.6 25 0.00055 28.8 6.5 68 671-738 29-101 (149)
383 PF14853 Fis1_TPR_C: Fis1 C-te 68.3 9.4 0.0002 25.4 3.5 30 710-739 3-32 (53)
384 TIGR03504 FimV_Cterm FimV C-te 67.8 11 0.00024 23.9 3.6 25 309-333 5-29 (44)
385 KOG2297 Predicted translation 67.4 1.2E+02 0.0026 29.0 13.5 54 289-352 184-237 (412)
386 COG1747 Uncharacterized N-term 67.2 1.6E+02 0.0035 30.5 19.9 159 504-669 65-232 (711)
387 PRK11619 lytic murein transgly 67.1 2.1E+02 0.0045 31.7 39.6 421 282-728 43-496 (644)
388 PF14561 TPR_20: Tetratricopep 65.7 44 0.00095 25.4 7.2 43 694-736 8-50 (90)
389 PF13762 MNE1: Mitochondrial s 65.5 82 0.0018 26.5 10.5 78 275-352 42-129 (145)
390 KOG3807 Predicted membrane pro 65.5 63 0.0014 31.0 9.4 23 692-714 380-402 (556)
391 PF10579 Rapsyn_N: Rapsyn N-te 65.2 15 0.00033 26.7 4.2 47 618-664 18-65 (80)
392 COG4976 Predicted methyltransf 65.0 9.3 0.0002 34.3 3.9 60 651-710 4-65 (287)
393 COG2909 MalT ATP-dependent tra 63.4 2.6E+02 0.0055 31.5 28.2 187 481-668 469-685 (894)
394 COG2912 Uncharacterized conser 63.3 28 0.0006 32.7 6.7 58 680-737 187-244 (269)
395 PF09477 Type_III_YscG: Bacter 63.0 64 0.0014 25.2 7.3 80 134-216 20-99 (116)
396 TIGR02508 type_III_yscG type I 62.9 69 0.0015 24.7 9.1 85 319-407 21-105 (115)
397 PF06552 TOM20_plant: Plant sp 62.7 87 0.0019 27.4 9.0 44 689-739 95-138 (186)
398 PF10366 Vps39_1: Vacuolar sor 61.9 75 0.0016 25.2 8.1 27 87-113 41-67 (108)
399 smart00386 HAT HAT (Half-A-TPR 61.9 13 0.00028 21.1 3.1 29 688-716 1-29 (33)
400 PHA02875 ankyrin repeat protei 61.4 2E+02 0.0044 29.6 15.9 78 96-181 10-91 (413)
401 PF14863 Alkyl_sulf_dimr: Alky 61.4 27 0.00058 29.2 5.8 64 659-725 58-121 (141)
402 KOG4077 Cytochrome c oxidase, 60.2 57 0.0012 26.3 6.9 47 387-433 67-113 (149)
403 KOG0376 Serine-threonine phosp 59.4 14 0.0003 37.4 4.4 56 680-735 10-65 (476)
404 cd08819 CARD_MDA5_2 Caspase ac 58.2 58 0.0013 24.4 6.3 38 350-388 48-85 (88)
405 PRK13800 putative oxidoreducta 57.9 3.6E+02 0.0079 31.4 25.5 48 641-688 788-835 (897)
406 KOG4814 Uncharacterized conser 57.6 29 0.00062 36.6 6.3 84 653-736 365-456 (872)
407 PF04910 Tcf25: Transcriptiona 57.4 2.2E+02 0.0047 28.7 16.7 55 578-632 110-165 (360)
408 PF07163 Pex26: Pex26 protein; 57.2 93 0.002 29.4 8.8 87 477-563 90-181 (309)
409 KOG4279 Serine/threonine prote 56.8 3E+02 0.0066 30.2 13.6 48 648-705 350-397 (1226)
410 COG4976 Predicted methyltransf 56.6 18 0.00039 32.7 4.1 55 684-738 5-59 (287)
411 cd08819 CARD_MDA5_2 Caspase ac 56.5 78 0.0017 23.7 6.6 38 552-590 48-85 (88)
412 KOG2581 26S proteasome regulat 56.3 1.2E+02 0.0026 30.3 9.8 90 648-739 175-278 (493)
413 PF08311 Mad3_BUB1_I: Mad3/BUB 56.1 1E+02 0.0022 25.2 8.4 23 676-698 101-123 (126)
414 PF07163 Pex26: Pex26 protein; 55.7 1.3E+02 0.0028 28.5 9.4 87 376-462 90-181 (309)
415 PRK15180 Vi polysaccharide bio 55.6 2.5E+02 0.0054 28.8 24.6 84 654-737 710-805 (831)
416 PF11846 DUF3366: Domain of un 55.5 39 0.00084 30.3 6.4 36 670-705 140-175 (193)
417 COG4941 Predicted RNA polymera 55.4 1.9E+02 0.0041 28.2 10.6 120 586-709 271-400 (415)
418 PF13929 mRNA_stabil: mRNA sta 55.3 2E+02 0.0043 27.6 13.5 108 385-492 144-260 (292)
419 PF11846 DUF3366: Domain of un 53.2 49 0.0011 29.7 6.7 51 619-669 121-171 (193)
420 smart00777 Mad3_BUB1_I Mad3/BU 53.1 64 0.0014 26.3 6.5 38 695-732 84-123 (125)
421 PF11663 Toxin_YhaV: Toxin wit 53.0 15 0.00033 29.9 2.9 34 581-616 105-138 (140)
422 PF11848 DUF3368: Domain of un 52.6 55 0.0012 21.2 4.9 34 379-412 12-45 (48)
423 KOG4077 Cytochrome c oxidase, 52.4 68 0.0015 25.9 6.2 44 590-633 68-111 (149)
424 PF11848 DUF3368: Domain of un 51.3 55 0.0012 21.2 4.8 35 312-346 11-45 (48)
425 COG3947 Response regulator con 50.9 2.3E+02 0.005 27.1 12.9 57 644-700 281-339 (361)
426 KOG0530 Protein farnesyltransf 50.9 2.2E+02 0.0047 26.8 12.0 88 658-745 94-184 (318)
427 KOG0686 COP9 signalosome, subu 50.8 1.5E+02 0.0033 29.7 9.5 57 25-81 152-214 (466)
428 PF08311 Mad3_BUB1_I: Mad3/BUB 50.3 92 0.002 25.5 7.2 61 670-733 62-124 (126)
429 KOG3824 Huntingtin interacting 47.5 34 0.00074 32.3 4.6 50 617-669 127-177 (472)
430 COG5191 Uncharacterized conser 47.0 51 0.0011 31.4 5.6 81 637-717 102-185 (435)
431 PF11768 DUF3312: Protein of u 46.8 2E+02 0.0043 30.4 10.2 127 544-694 412-543 (545)
432 PF12862 Apc5: Anaphase-promot 46.7 56 0.0012 25.0 5.2 27 678-704 45-71 (94)
433 cd00280 TRFH Telomeric Repeat 46.6 2.1E+02 0.0045 25.3 12.4 42 308-352 116-157 (200)
434 PF10255 Paf67: RNA polymerase 46.2 1.2E+02 0.0026 30.9 8.5 55 680-735 128-191 (404)
435 PHA02878 ankyrin repeat protei 46.1 3.5E+02 0.0076 28.6 12.9 107 107-221 149-263 (477)
436 KOG4521 Nuclear pore complex, 45.0 5.8E+02 0.012 30.0 15.7 130 573-706 985-1135(1480)
437 PRK13800 putative oxidoreducta 44.9 5.7E+02 0.012 29.9 28.5 18 402-419 633-650 (897)
438 PF10366 Vps39_1: Vacuolar sor 44.7 1.6E+02 0.0034 23.4 9.2 27 371-397 41-67 (108)
439 PF00244 14-3-3: 14-3-3 protei 44.6 2.7E+02 0.0058 26.0 11.0 159 577-736 7-197 (236)
440 PF11663 Toxin_YhaV: Toxin wit 44.6 30 0.00064 28.3 3.3 32 96-129 106-137 (140)
441 PF10516 SHNi-TPR: SHNi-TPR; 43.5 46 0.001 20.3 3.3 28 709-736 2-29 (38)
442 COG0735 Fur Fe2+/Zn2+ uptake r 43.3 1.1E+02 0.0024 25.9 6.8 65 106-171 7-71 (145)
443 KOG2062 26S proteasome regulat 43.2 5E+02 0.011 28.7 32.6 22 310-331 217-238 (929)
444 KOG0292 Vesicle coat complex C 42.9 2.5E+02 0.0054 31.5 10.5 132 548-703 651-782 (1202)
445 PHA03100 ankyrin repeat protei 42.1 4.4E+02 0.0096 27.8 17.4 14 10-23 50-63 (480)
446 PRK10564 maltose regulon perip 40.7 53 0.0012 31.4 4.9 39 371-409 259-297 (303)
447 PHA02537 M terminase endonucle 40.6 1.8E+02 0.0038 26.9 8.0 104 581-706 93-210 (230)
448 KOG2659 LisH motif-containing 40.2 2.9E+02 0.0063 25.4 9.1 96 571-669 26-130 (228)
449 KOG2908 26S proteasome regulat 39.9 3.8E+02 0.0081 26.4 10.1 49 654-702 87-143 (380)
450 PF02184 HAT: HAT (Half-A-TPR) 39.6 62 0.0013 18.9 3.2 26 689-715 2-27 (32)
451 PF15015 NYD-SP12_N: Spermatog 39.5 66 0.0014 32.1 5.4 72 647-719 233-310 (569)
452 PF11817 Foie-gras_1: Foie gra 39.4 83 0.0018 29.6 6.2 23 646-668 182-204 (247)
453 PF07064 RIC1: RIC1; InterPro 39.1 3.5E+02 0.0075 25.7 13.2 60 648-707 185-253 (258)
454 PF09477 Type_III_YscG: Bacter 39.0 1.9E+02 0.0042 22.8 8.1 80 317-399 20-99 (116)
455 KOG1308 Hsp70-interacting prot 39.0 12 0.00026 36.0 0.5 63 684-746 124-186 (377)
456 cd08326 CARD_CASP9 Caspase act 38.9 47 0.001 24.8 3.5 58 45-102 21-78 (84)
457 PF12796 Ank_2: Ankyrin repeat 38.9 1.5E+02 0.0033 22.0 6.6 50 166-221 5-54 (89)
458 KOG2063 Vacuolar assembly/sort 38.5 6.6E+02 0.014 28.8 17.3 27 305-331 506-532 (877)
459 COG5191 Uncharacterized conser 38.5 51 0.0011 31.4 4.3 80 602-683 103-185 (435)
460 PRK10564 maltose regulon perip 38.1 57 0.0012 31.2 4.6 40 305-344 259-298 (303)
461 KOG2422 Uncharacterized conser 37.6 5.4E+02 0.012 27.5 13.6 79 578-656 349-430 (665)
462 PF13929 mRNA_stabil: mRNA sta 37.3 3.8E+02 0.0083 25.7 19.2 48 374-421 207-255 (292)
463 KOG1498 26S proteasome regulat 36.7 4.6E+02 0.0099 26.4 16.0 92 645-736 134-240 (439)
464 PF12069 DUF3549: Protein of u 36.3 4.4E+02 0.0095 26.1 13.5 98 442-541 169-266 (340)
465 KOG0292 Vesicle coat complex C 36.0 1.1E+02 0.0023 34.1 6.6 70 617-699 654-723 (1202)
466 KOG4642 Chaperone-dependent E3 35.8 3.7E+02 0.0079 25.0 9.5 98 581-683 20-126 (284)
467 PF04190 DUF410: Protein of un 35.6 4E+02 0.0086 25.4 19.2 79 539-633 89-168 (260)
468 KOG0991 Replication factor C, 35.4 3.6E+02 0.0079 24.9 12.1 55 560-616 228-282 (333)
469 PF04781 DUF627: Protein of un 35.0 1.6E+02 0.0035 23.4 5.9 25 693-717 63-87 (111)
470 COG0790 FOG: TPR repeat, SEL1 34.3 4.3E+02 0.0094 25.5 17.3 81 482-568 53-141 (292)
471 PRK13342 recombination factor 34.1 5.5E+02 0.012 26.6 18.3 104 401-519 173-279 (413)
472 KOG4567 GTPase-activating prot 32.9 4.7E+02 0.01 25.4 9.7 78 490-572 263-350 (370)
473 KOG3783 Uncharacterized conser 32.3 6.3E+02 0.014 26.7 24.4 68 671-738 444-521 (546)
474 KOG0551 Hsp90 co-chaperone CNS 31.9 5.1E+02 0.011 25.5 11.0 93 574-669 84-180 (390)
475 COG0735 Fur Fe2+/Zn2+ uptake r 31.2 1.8E+02 0.0039 24.6 6.2 48 87-134 22-69 (145)
476 PRK11639 zinc uptake transcrip 30.8 1.8E+02 0.004 25.3 6.5 39 134-172 39-77 (169)
477 PF04190 DUF410: Protein of un 30.0 4.9E+02 0.011 24.8 17.9 88 378-465 19-116 (260)
478 PF11817 Foie-gras_1: Foie gra 29.9 1.3E+02 0.0028 28.3 5.8 21 577-597 184-204 (247)
479 PRK12798 chemotaxis protein; R 29.7 6.3E+02 0.014 25.9 16.9 182 549-736 90-285 (421)
480 PF12968 DUF3856: Domain of Un 29.6 2.4E+02 0.0052 22.8 5.9 64 673-736 54-128 (144)
481 PF09986 DUF2225: Uncharacteri 29.3 4.5E+02 0.0098 24.1 9.6 90 616-705 87-196 (214)
482 PF14669 Asp_Glu_race_2: Putat 29.0 4.2E+02 0.0091 23.6 10.8 155 16-180 1-206 (233)
483 PRK09462 fur ferric uptake reg 28.3 2.7E+02 0.0059 23.6 7.0 61 110-171 7-68 (148)
484 PF04034 DUF367: Domain of unk 28.2 3.3E+02 0.0073 22.3 6.9 59 642-700 66-125 (127)
485 cd02680 MIT_calpain7_2 MIT: do 28.2 1.1E+02 0.0024 22.3 3.7 18 686-703 18-35 (75)
486 PF14689 SPOB_a: Sensor_kinase 28.1 90 0.002 21.6 3.3 25 374-398 28-52 (62)
487 PF10255 Paf67: RNA polymerase 28.0 2.8E+02 0.006 28.3 7.8 59 156-214 123-192 (404)
488 PF07575 Nucleopor_Nup85: Nup8 28.0 8.2E+02 0.018 26.7 16.2 28 273-300 149-176 (566)
489 cd00280 TRFH Telomeric Repeat 27.9 1.6E+02 0.0034 26.0 5.2 21 649-669 118-138 (200)
490 PF07575 Nucleopor_Nup85: Nup8 27.8 8.2E+02 0.018 26.7 18.6 71 359-431 395-465 (566)
491 KOG2659 LisH motif-containing 27.0 4.2E+02 0.0092 24.4 7.9 97 536-632 22-129 (228)
492 KOG0686 COP9 signalosome, subu 27.0 6.8E+02 0.015 25.4 13.3 90 541-632 151-255 (466)
493 COG4259 Uncharacterized protei 26.6 2E+02 0.0042 22.2 4.8 45 689-733 52-97 (121)
494 PLN03192 Voltage-dependent pot 26.5 1E+03 0.023 27.4 15.0 24 343-366 624-647 (823)
495 PF09454 Vps23_core: Vps23 cor 26.3 1E+02 0.0023 21.6 3.3 49 569-618 6-54 (65)
496 KOG4567 GTPase-activating prot 25.9 5.4E+02 0.012 25.0 8.6 43 106-148 264-306 (370)
497 cd08332 CARD_CASP2 Caspase act 25.9 92 0.002 23.6 3.3 37 63-99 43-79 (90)
498 PRK15490 Vi polysaccharide bio 25.8 3.4E+02 0.0073 29.3 8.3 47 684-732 52-98 (578)
499 PF08424 NRDE-2: NRDE-2, neces 25.5 6.7E+02 0.014 24.8 14.3 115 623-739 48-185 (321)
500 PRK13184 pknD serine/threonine 25.2 1.1E+03 0.025 27.4 22.2 316 375-702 481-868 (932)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.5e-91 Score=777.97 Aligned_cols=661 Identities=33% Similarity=0.588 Sum_probs=638.8
Q ss_pred cchhhhHHHHHHHHhCCCCCcchhhHHHHHHHccCCchhhhhhhhcCCC----CchhhhhHHHHHhhcCCChhHHHHhhc
Q 041741 3 AHVAGKLLHAHILRNGLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMPH----KDIYSWNAILSAQCKSDDLEFAYKLFD 78 (748)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 78 (748)
.+..|..++..+...|.+|+..+|..++.+|.+.+..+.|..++..+.+ ++...++.++..|++.|+++.|.++|+
T Consensus 66 ~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~ 145 (857)
T PLN03077 66 QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFG 145 (857)
T ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHh
Confidence 4678899999999999999999999999999999999999999987653 788899999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHH
Q 041741 79 EMPERNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVA 158 (748)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 158 (748)
+|++||..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.|+..++
T Consensus 146 ~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225 (857)
T ss_pred cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCC
Q 041741 159 NALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGV 238 (748)
Q Consensus 159 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~ 238 (748)
+.|+.+|+++|++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+.
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~----- 300 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL----- 300 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-----
Confidence 999999999999999999999999999999999999999999999999999999999887777776666655544
Q ss_pred CcchhcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhcCC
Q 041741 239 ESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPERSVVSWNVMIAGYGQKYQ 318 (748)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (748)
.|+
T Consensus 301 -----------------------------------------------------------------------------~g~ 303 (857)
T PLN03077 301 -----------------------------------------------------------------------------LGD 303 (857)
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 345
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 041741 319 STKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREMQFR 398 (748)
Q Consensus 319 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 398 (748)
.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|..||..+|+.++.+|++.|++++|+++|++|.+.
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 56677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHH
Q 041741 399 GVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIA 478 (748)
Q Consensus 399 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 478 (748)
|+.||..||..++.+|++.|+++.+.++++.+.+.|..++..+++.++.+|++.|++++|.++|+++.++|+.+|+++|.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 041741 479 GLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYG 558 (748)
Q Consensus 479 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (748)
+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..++++++.+|+++|++++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 99999999999999999986 58999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCC
Q 041741 559 ARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGV 638 (748)
Q Consensus 559 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 638 (748)
|.++|+.+ .+|..+|++++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|....|+
T Consensus 543 A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 543 AWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999668999
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHH
Q 041741 639 EPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIY 718 (748)
Q Consensus 639 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 718 (748)
.|+..+|..++++|.+.|++++|.+++++|+.+|+..+|..++.+|...|+.+.++.+.+++++++|+++..|..|+++|
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCCCCCCC
Q 041741 719 SSLGRWDDLRAVRELMSENCIVKDPAYSL 747 (748)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 747 (748)
...|+|++|.++.+.|+++|++++||+||
T Consensus 702 a~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 702 ADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred HHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 99999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.6e-75 Score=650.16 Aligned_cols=613 Identities=18% Similarity=0.296 Sum_probs=586.0
Q ss_pred ccchhhhHHHHHHHHhCCCCCcchhhHHHHHHHccCCchhhhhhhhcCCCCchhhhhHHHHHhhcCCChhHHHHhhccCC
Q 041741 2 KAHVAGKLLHAHILRNGLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMPHKDIYSWNAILSAQCKSDDLEFAYKLFDEMP 81 (748)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 81 (748)
+++..|.++|..+...|..+++..+|+|+.+|.+.|+++.|.++|++|++||+.+|+.+|.+|++.|++++|..+|++|.
T Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~ 179 (857)
T PLN03077 100 RAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML 179 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ----CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhH
Q 041741 82 ----ERNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYV 157 (748)
Q Consensus 82 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 157 (748)
.||..+|+.+++++...+++..+.+++..|.+.|+.||..+++.++.+|++.|+++.|.++|+.|. .||..+
T Consensus 180 ~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s 255 (857)
T PLN03077 180 WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCIS 255 (857)
T ss_pred HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcch
Confidence 499999999999999999999999999999999999999999999999999999999999999986 578899
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCC----CCCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 041741 158 ANALLSLYAKCGWTKHAVPVFEEMS----EPNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAR 233 (748)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 233 (748)
|+++|.+|++.|+.++|.++|++|. .||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++
T Consensus 256 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 9999999999999999999999996 499999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchhcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCC----CCCcccHHHH
Q 041741 234 EGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLP----ERSVVSWNVM 309 (748)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l 309 (748)
. +.++. +.++++.|. .||..+|+.++.+|++.|++++|.++|+.|. .||..+|+.+
T Consensus 336 ~-------------g~~~~---A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 336 L-------------GSWGE---AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred c-------------CCHHH---HHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 9 56666 778887764 5789999999999999999999999999885 4899999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHH
Q 041741 310 IAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAI 389 (748)
Q Consensus 310 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 389 (748)
+.+|++.|+++.+.++++.|.+.|+.|+..+++.++.+|++.|++++|.++|+.|.++|..+|+.++.+|++.|+.++|+
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 041741 390 KLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELD 469 (748)
Q Consensus 390 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 469 (748)
.+|++|.. +++||..||..++.+|++.|+++.+.+++..+.+.|..++..+++.++.+|+++|++++|.++|+.+ .+|
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d 553 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKD 553 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCC
Confidence 99999986 5999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHH-HhCCCCchHHHHHHHH
Q 041741 470 IVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIE-KDGYVNDIFVGSALIE 548 (748)
Q Consensus 470 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~ 548 (748)
+.+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|+.++.
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 6799999999999999
Q ss_pred HHHhcCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCChHHHH
Q 041741 549 MYCKCGDIYGARQFFDMMH-GKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPD-DITFVAILTACSHSGLVDVGV 626 (748)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~ 626 (748)
+|++.|++++|.+++++|. +||..+|++|+.+|...|+.+.+....+++.+. .|+ ...|..+...|...|++++|.
T Consensus 634 ~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHH
Confidence 9999999999999999996 799999999999999999999999999999884 555 456778888999999999999
Q ss_pred HHHHHhhhhhCCCCChh
Q 041741 627 EIFNSMQLDHGVEPILD 643 (748)
Q Consensus 627 ~~~~~~~~~~~~~~~~~ 643 (748)
++.+.| ++.|+++++.
T Consensus 712 ~vr~~M-~~~g~~k~~g 727 (857)
T PLN03077 712 RVRKTM-RENGLTVDPG 727 (857)
T ss_pred HHHHHH-HHcCCCCCCC
Confidence 999999 6889888764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-66 Score=566.37 Aligned_cols=479 Identities=33% Similarity=0.584 Sum_probs=469.3
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHhccCCC-----CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 041741 269 EADLHLSNSLLDMYAKNGDMDSAEVIFSNLPE-----RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSIN 343 (748)
Q Consensus 269 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 343 (748)
..+...++.++..+.+.|++++|.++|+.|.. +|..+|+.++.+|.+.++++.+.+++..|...|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 44566899999999999999999999998853 5778999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHH
Q 041741 344 MLVACVRSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESG 423 (748)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 423 (748)
++.+|++.|+++.|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|...|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 041741 424 KQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYP 503 (748)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 503 (748)
.+++..+.+.|..++..+++.++.+|++.|++++|.++|+.|.++|+.+||++|.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 041741 504 TQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQ 583 (748)
Q Consensus 504 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 583 (748)
|..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+++.|+.+|+++|++++|.++|++|.+||..+|++||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 041741 584 NGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEM 663 (748)
Q Consensus 584 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 663 (748)
.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+..|+.|+..+|..++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999997778999999999999999999999999999
Q ss_pred HHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCCCCCC
Q 041741 664 LIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCIVKDP 743 (748)
Q Consensus 664 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 743 (748)
++++|+..|+..+|+.++.+|...|+++.|..+++++++++|++...|..|+++|.+.|+|++|.+++++|+++|+++.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 041741 744 AYSL 747 (748)
Q Consensus 744 ~~~~ 747 (748)
|+||
T Consensus 564 g~s~ 567 (697)
T PLN03081 564 ACTW 567 (697)
T ss_pred CeeE
Confidence 9999
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-63 Score=543.87 Aligned_cols=533 Identities=16% Similarity=0.237 Sum_probs=458.6
Q ss_pred CCCCCcchhhHHHHHHHccCCchhhhhhhhcCCCC-----chhhhhHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHH
Q 041741 18 GLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMPHK-----DIYSWNAILSAQCKSDDLEFAYKLFDEMPERNVVSWNNLI 92 (748)
Q Consensus 18 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 92 (748)
+-.++...|..++..|++.|++++|.++|+.|.++ +..+++.++..|++.|.+++|..+|+.|..||..+|+.++
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 33456778999999999999999999999999874 4456778889999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChh
Q 041741 93 SALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTK 172 (748)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 172 (748)
.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCC----CCCeehHHHHHHHHHcCCCHHHHHHHHHHHHH--cCCCCCcccHHHHHHHHhccCCCCCcchhccc
Q 041741 173 HAVPVFEEMS----EPNEVTFTAMMSGLAKTDRVVEALEMFRLMIR--KAVSIDSVSLSSVLGVCAREGCGVESDVFAQS 246 (748)
Q Consensus 173 ~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~ 246 (748)
+|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..||+.+|.+|++.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~------------ 592 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA------------ 592 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC------------
Confidence 9999999996 39999999999999999999999999999987 68999999999999999999
Q ss_pred ccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCCC----CCcccHHHHHHHHHhcCChhHH
Q 041741 247 DNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPE----RSVVSWNVMIAGYGQKYQSTKA 322 (748)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a 322 (748)
+.++. +.++++.|.+.|+.|+..+|+.+|.+|++.|++++|.++|+.|.+ ||..+|+.++.+|++.|++++|
T Consensus 593 -G~lde---A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 593 -GQVDR---AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred -CCHHH---HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 66776 999999999999999999999999999999999999999999975 6888999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCC----CCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 041741 323 IELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMP----SPSVSSWNAMLSSYSQSENHKEAIKLFREMQFR 398 (748)
Q Consensus 323 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 398 (748)
.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|. .|+..+|+.||.+|++.|++++|.++|++|...
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999995 499999999999999999999999999999999
Q ss_pred CCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHH
Q 041741 399 GVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIA 478 (748)
Q Consensus 399 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 478 (748)
|+.||..||..++.+|++.|+++.|.+++..+.+.|+.|+..+++.++.+|.+ .++++..+.+.+...+. ..
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~------g~ 820 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS------GR 820 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc------cc
Confidence 99999999999999999999999999999999999999999999998876532 34444433322221100 00
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 041741 479 GLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYG 558 (748)
Q Consensus 479 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (748)
.....+..+.|+.+|++|.+.|+.||..||+.++.+++..+....+..+++.+...+..
T Consensus 821 ~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~--------------------- 879 (1060)
T PLN03218 821 PQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS--------------------- 879 (1060)
T ss_pred cccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC---------------------
Confidence 00111222457777777777777777777766665544444444444444333333333
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 041741 559 ARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDI 607 (748)
Q Consensus 559 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 607 (748)
++..+|+++++++.+. .++|..++++|...|+.|+..
T Consensus 880 ----------~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 880 ----------QKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ----------cchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 4556666666666322 368999999999999999985
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-62 Score=535.53 Aligned_cols=527 Identities=17% Similarity=0.251 Sum_probs=481.1
Q ss_pred CCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCC-CCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHH
Q 041741 116 FVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGL-DKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMS 194 (748)
Q Consensus 116 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 194 (748)
..++...|..++..+++.|+++.|.++++.|.+.|+ +++..+++.++..|.+.|..++|..+|+.|..||..+|+.++.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456778899999999999999999999999999995 5778888999999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCCcchhcccccccccccchhHHHHHHHHhcCCCchHH
Q 041741 195 GLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADLHL 274 (748)
Q Consensus 195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (748)
+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++. +.++. +.++++.|.+.|+.||..+
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~-------------G~vd~---A~~vf~eM~~~Gv~PdvvT 509 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS-------------GKVDA---MFEVFHEMVNAGVEANVHT 509 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-------------cCHHH---HHHHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999999999999999999999 66666 9999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHHHh--cCCCCChhhHHHHHHHH
Q 041741 275 SNSLLDMYAKNGDMDSAEVIFSNLPE----RSVVSWNVMIAGYGQKYQSTKAIELLQRMKS--CGFEPDEVTSINMLVAC 348 (748)
Q Consensus 275 ~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~ 348 (748)
|+.+|.+|++.|++++|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..||+.+|.+|
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999864 7889999999999999999999999999986 68999999999999999
Q ss_pred HhcCCHHHHHHHhccCCC----CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHH
Q 041741 349 VRSGDIKTGREMFDSMPS----PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGK 424 (748)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 424 (748)
++.|++++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|..++.+|++.|+++.|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999975 7789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCC----CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 041741 425 QVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIP----ELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNE 500 (748)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 500 (748)
+++..|.+.|..|+..+|+.++.+|++.|++++|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|...|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999985 6899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHH
Q 041741 501 MYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHG 580 (748)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 580 (748)
+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|+.++.++. +++++|.++.+.+.. |+. ...
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~-----f~~-g~~ 821 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS-----FDS-GRP 821 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh-----hhc-ccc
Confidence 999999999999999999999999999999999999999999999987644 245555555433221 110 111
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHH
Q 041741 581 YAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHE 660 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 660 (748)
....+..+.|+.+|++|.+.|+.||..||+.++.++...+..+.+..+++.| ...+..|+..+|+.+++.+.+. .++
T Consensus 822 ~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m-~~~~~~~~~~~y~~Li~g~~~~--~~~ 898 (1060)
T PLN03218 822 QIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENL-GISADSQKQSNLSTLVDGFGEY--DPR 898 (1060)
T ss_pred ccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHh-ccCCCCcchhhhHHHHHhhccC--hHH
Confidence 1122344679999999999999999999999998888889999999999888 4567788899999999988432 468
Q ss_pred HHHHHhhCC
Q 041741 661 AEMLIDEMP 669 (748)
Q Consensus 661 A~~~~~~~~ 669 (748)
|..++++|.
T Consensus 899 A~~l~~em~ 907 (1060)
T PLN03218 899 AFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHH
Confidence 999999994
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-61 Score=524.86 Aligned_cols=474 Identities=23% Similarity=0.359 Sum_probs=446.7
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHH
Q 041741 83 RNVVSWNNLISALVRNGLEEKALSVYNKMSNEG-FVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANAL 161 (748)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (748)
++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 566789999999999999999999999998864 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCCcc
Q 041741 162 LSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVESD 241 (748)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~ 241 (748)
+.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~------- 237 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL------- 237 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC-------
Confidence 9999999999999999999999999999999999999999999999999999988877777776666655443
Q ss_pred hhcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhH
Q 041741 242 VFAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPERSVVSWNVMIAGYGQKYQSTK 321 (748)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (748)
|..+.
T Consensus 238 ---------------------------------------------------------------------------~~~~~ 242 (697)
T PLN03081 238 ---------------------------------------------------------------------------GSARA 242 (697)
T ss_pred ---------------------------------------------------------------------------CcHHH
Confidence 34455
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 041741 322 AIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVK 401 (748)
Q Consensus 322 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 401 (748)
+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.++|..+|+.++.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 66677778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHH
Q 041741 402 PDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLS 481 (748)
Q Consensus 402 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 481 (748)
||..||..++.+|++.|+++.+.+++..+.+.|..++..+++.++.+|+++|++++|.++|++|.++|+.+||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHH-hCCCCchHHHHHHHHHHHhcCCHHHHH
Q 041741 482 LNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEK-DGYVNDIFVGSALIEMYCKCGDIYGAR 560 (748)
Q Consensus 482 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (748)
+.|+.++|+++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999987 599999999999999999999999999
Q ss_pred HHhhhcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCC
Q 041741 561 QFFDMMH-GKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPD-DITFVAILTACSHSGLVDVGVEIFNSMQLDHGV 638 (748)
Q Consensus 561 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 638 (748)
++++++. .|+..+|++|+.+|...|+++.|..+++++.+. .|+ ..+|..++..|++.|++++|.++++.| +..|+
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m-~~~g~ 559 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETL-KRKGL 559 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHH-HHcCC
Confidence 9999987 689999999999999999999999999999864 554 578999999999999999999999999 57777
Q ss_pred CCC
Q 041741 639 EPI 641 (748)
Q Consensus 639 ~~~ 641 (748)
+..
T Consensus 560 ~k~ 562 (697)
T PLN03081 560 SMH 562 (697)
T ss_pred ccC
Confidence 543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.8e-39 Score=368.95 Aligned_cols=717 Identities=12% Similarity=0.017 Sum_probs=422.8
Q ss_pred ccchhhhHHHHHHHHhCCCCCcchhhHHHHHHHccCCchhhhhhhhcCCC---CchhhhhHHHHHhhcCCChhHHHHhhc
Q 041741 2 KAHVAGKLLHAHILRNGLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMPH---KDIYSWNAILSAQCKSDDLEFAYKLFD 78 (748)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 78 (748)
.++..|...+..++... |.+...+..+...+...|++++|..+++++.+ ++...+..+...+...|++++|...|+
T Consensus 139 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 217 (899)
T TIGR02917 139 GQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 35667777777777654 34556677777777888888888887777654 344566667777777777777777777
Q ss_pred cCCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcH
Q 041741 79 EMPE---RNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNI 155 (748)
Q Consensus 79 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (748)
+..+ .+...+..++..+...|++++|...++.+.+.. +.+...+......+...|+++.|...++.+.+.+.. ..
T Consensus 218 ~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~ 295 (899)
T TIGR02917 218 KAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YL 295 (899)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ch
Confidence 6543 344556666777777777777777777776642 222222222233334556666666666655554422 12
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHhcCCC--C-CeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 041741 156 YVANALLSLYAKCGWTKHAVPVFEEMSE--P-NEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCA 232 (748)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~ 232 (748)
..+..+...+...|++++|...|++..+ | +...+..+...+...|++++|...++.+...+ +.+...+..+...+.
T Consensus 296 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 374 (899)
T TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYL 374 (899)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 2223333444455555555555554432 1 22333444444445555555555555544332 112233333333343
Q ss_pred ccCCCCCcchhcccc---------------------cccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHH
Q 041741 233 REGCGVESDVFAQSD---------------------NKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSA 291 (748)
Q Consensus 233 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 291 (748)
..|+...+..++... +.... +...+........ ........++..+.+.|++++|
T Consensus 375 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 375 ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE---AIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH---HHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHH
Confidence 332111111111000 11111 3333333332221 1223334455566666666666
Q ss_pred HHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--
Q 041741 292 EVIFSNLPE---RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPS-- 366 (748)
Q Consensus 292 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-- 366 (748)
..+++.+.. .+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+.+..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 529 (899)
T TIGR02917 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529 (899)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 666665543 234456666666666667777777666666542 22334455555666666677776666666543
Q ss_pred -CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHH
Q 041741 367 -PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGL 445 (748)
Q Consensus 367 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 445 (748)
.+..++..+...+.+.|+.++|..+++++...+ +.+...+..+...+...|+++.+..+++.+.+..+ .+...+..+
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 607 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLML 607 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 334455666666666677777777776665542 23344555566666667777777777666655432 245566666
Q ss_pred HHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCch
Q 041741 446 IGIYSKCQRNELAERVFHRIPE---LDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSF 522 (748)
Q Consensus 446 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 522 (748)
..+|...|++++|...++.+.+ .++..+..+...+...|++++|...|+++.... +.+..++..+...+...|+++
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 6777777777777777766543 234456666666777777777777777766542 334556666666677777777
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041741 523 QGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIAS 600 (748)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 600 (748)
.|..+++.+.+.. +.+...+..+...+.+.|++++|.+.|+.+.. |+..++..++.++...|++++|.+.++++.+.
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777777766654 34555566666677777777777777776542 44455666667777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHH
Q 041741 601 GVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWE 678 (748)
Q Consensus 601 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 678 (748)
. +.+...+..+...|...|++++|...|+++... .+++...+..++..+...|+ .+|..+++++. .+.++..+.
T Consensus 766 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 766 H-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred C-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence 3 445556666667777777777777777776422 23345566667777777777 66777776663 233455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 679 VLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 679 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
.++..+...|++++|...++++++.+|.++.++..++.++.+.|++++|.+++++|.
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666667777777777777777777777777777777777777777777777777664
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-38 Score=367.20 Aligned_cols=709 Identities=12% Similarity=0.033 Sum_probs=476.7
Q ss_pred cchhhhHHHHHHHHhCCCCCcchhhHHHHHHHccCCchhhhhhhhcCCC---CchhhhhHHHHHhhcCCChhHHHHhhcc
Q 041741 3 AHVAGKLLHAHILRNGLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMPH---KDIYSWNAILSAQCKSDDLEFAYKLFDE 79 (748)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 79 (748)
+++.|..++.......-+.....+..+...|...|++++|...|+++.+ .+..++..+...+...|++++|..++++
T Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 184 (899)
T TIGR02917 105 KFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDE 184 (899)
T ss_pred CHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455555565544344455667888999999999999999999999865 3456888999999999999999999998
Q ss_pred CCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHh
Q 041741 80 MPE---RNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIY 156 (748)
Q Consensus 80 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 156 (748)
+.+ ++...+..+...+...|++++|...|++..+.. +.+..++..+...+...|+++.|...++.+.+.... +..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~ 262 (899)
T TIGR02917 185 VLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPL 262 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Cch
Confidence 754 456678888999999999999999999998753 456677888888999999999999999999987644 334
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCCC--CC-eehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 041741 157 VANALLSLYAKCGWTKHAVPVFEEMSE--PN-EVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAR 233 (748)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 233 (748)
.+......+...|++++|...|+++.+ |+ ...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 263 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 341 (899)
T TIGR02917 263 AHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLR 341 (899)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 444455566788999999999998765 32 2334555667888999999999999998753 2233445555556666
Q ss_pred cCCCCCcchhcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCCCC---CcccHHHHH
Q 041741 234 EGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPER---SVVSWNVMI 310 (748)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~ 310 (748)
.| .... +...+..+.... +.+...+..+...+...|++++|.+.|+.+.+. +...+..+.
T Consensus 342 ~g-------------~~~~---A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 404 (899)
T TIGR02917 342 LG-------------RVDE---AIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG 404 (899)
T ss_pred CC-------------CHHH---HHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 53 3333 444444443322 334556666667777777777777777665431 223445555
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCC---------------------------------CCChhhHHHHHHHHHhcCCHHHH
Q 041741 311 AGYGQKYQSTKAIELLQRMKSCGF---------------------------------EPDEVTSINMLVACVRSGDIKTG 357 (748)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~m~~~g~---------------------------------~p~~~~~~~ll~~~~~~~~~~~a 357 (748)
..+...|++++|++.++.+..... +++..++..+...+...|++++|
T Consensus 405 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 405 ISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHH
Confidence 555555566655555555544331 22334444444455555555555
Q ss_pred HHHhccCCC---CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhc
Q 041741 358 REMFDSMPS---PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTA 434 (748)
Q Consensus 358 ~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 434 (748)
...|+++.+ .+...+..+...+...|++++|.+.++++.... +.+..++..+...+...|+.+.+...+..+.+..
T Consensus 485 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 555544432 222333444444555555555555555554431 2233444444455555555555555555554443
Q ss_pred CCchhHHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 041741 435 SHIDNYVASGLIGIYSKCQRNELAERVFHRIPE---LDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATV 511 (748)
Q Consensus 435 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 511 (748)
+. +...+..++..|...|++++|...++.+.+ .++..|..+...+...|++++|...|+.+.+.. +.+...+..+
T Consensus 564 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 641 (899)
T TIGR02917 564 PQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLL 641 (899)
T ss_pred cc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 22 333444555556666666666666655542 234456666666666666666666666665542 2344455566
Q ss_pred HHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChh
Q 041741 512 LSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGD 588 (748)
Q Consensus 512 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 588 (748)
...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+ ++...+..++..+...|+++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHH
Confidence 666666666666666666665543 33455666666666666777777766666653 34556667777777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 041741 589 EAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEM 668 (748)
Q Consensus 589 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 668 (748)
+|...++++... .|+..++..++.++...|++++|...++++... .+.+...+..++..|...|++++|...++++
T Consensus 721 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 721 AAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 888888887775 355566667777788888888888888877432 2345677788888888899999999999887
Q ss_pred C--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCCC
Q 041741 669 P--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCIV 740 (748)
Q Consensus 669 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 740 (748)
. .++++..+..++..+...|+ .+|...++++++..|+++..+..++.++...|++++|.++++++.+.++.
T Consensus 797 ~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 797 VKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5 45577888888888888888 77999999999999999999999999999999999999999998876653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=1.6e-26 Score=264.97 Aligned_cols=417 Identities=13% Similarity=0.055 Sum_probs=295.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--CCcc---hH------------H
Q 041741 311 AGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPS--PSVS---SW------------N 373 (748)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~---~~------------~ 373 (748)
..+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+ |+.. .| .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34445555666666665555432 11344455555555556666666655555443 2111 11 1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcC
Q 041741 374 AMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQ 453 (748)
Q Consensus 374 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 453 (748)
.....+.+.|++++|+..++++.+.. +.+...+..+...+...|+++.|.+.++.+++..+. +...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 12345567788888888888877652 233445556667777788888888888887776543 3344555666664 35
Q ss_pred ChHHHHHHHhhCCCCC------------cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCc
Q 041741 454 RNELAERVFHRIPELD------------IVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSS 521 (748)
Q Consensus 454 ~~~~a~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 521 (748)
+.++|...++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 6788888777665321 1234456677888999999999999998763 22455677788889999999
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCC----CH---------HHHHHHHHHHHHcCChh
Q 041741 522 FQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGK----NT---------VTWNEMIHGYAQNGYGD 588 (748)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~ 588 (748)
++|...++.+.+.. +.++..+..+...+...++.++|...++.+... +. ..+..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999988654 234555555556677889999999999987642 11 11234567788999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhh
Q 041741 589 EAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDE 667 (748)
Q Consensus 589 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 667 (748)
+|..+++. .+++...+..+...+...|++++|+..|+++.. ..|+ ...+..++.+|...|++++|.+.++.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999872 355666778888999999999999999999853 3444 67788999999999999999999998
Q ss_pred CC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------chHHHhHHHhhcCChHHHHHHHHHHHh-cC
Q 041741 668 MP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA------PYSLLANIYSSLGRWDDLRAVRELMSE-NC 738 (748)
Q Consensus 668 ~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 738 (748)
+. ..| ++..+..+...+...|++++|.+.+++++...|+++. .+..++.++...|++++|+..|+++.. .+
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 86 333 5667777888888999999999999999998876654 566779999999999999999999864 44
Q ss_pred CCC
Q 041741 739 IVK 741 (748)
Q Consensus 739 ~~~ 741 (748)
+.+
T Consensus 743 ~~~ 745 (1157)
T PRK11447 743 ITP 745 (1157)
T ss_pred CCC
Confidence 543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=3.6e-25 Score=253.98 Aligned_cols=642 Identities=9% Similarity=0.020 Sum_probs=438.0
Q ss_pred hhHHHHHHHccCCchhhhhhhhcCCC---CchhhhhHHHHHhhcCCChhHHHHhhccCCC--CCchhH------------
Q 041741 26 CNRLIELYSKCNNTHSAQHLFDKMPH---KDIYSWNAILSAQCKSDDLEFAYKLFDEMPE--RNVVSW------------ 88 (748)
Q Consensus 26 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~------------ 88 (748)
.-..++.+...++.+.|...++++.. .|..++..+++.+.+.|+.++|.+.+++..+ |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 55566777788888888888888764 4567778888888888999998888888765 333222
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcch-HHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHH
Q 041741 89 -----NNLISALVRNGLEEKALSVYNKMSNEGFVPTHIT-LASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALL 162 (748)
Q Consensus 89 -----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (748)
..+.+.+...|++++|++.|+++.+.+ +|+... ...........|+.++|...++.+.+.. +.+...+..+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA 188 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLA 188 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 223446778888888888888887642 333221 1111222234578888888888888875 33556677788
Q ss_pred HHHHhcCChhhHHHHHhcCCCCCeeh---HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCC
Q 041741 163 SLYAKCGWTKHAVPVFEEMSEPNEVT---FTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVE 239 (748)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~ 239 (748)
..+...|+.++|++.++++.+..... -......+...+....+...+...... .|+...+.
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~--~p~~~~~~-------------- 252 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQV--FSDGDSVA-------------- 252 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHH--CCCchHHH--------------
Confidence 88888888888888888765421110 000111111122223333333332221 11111000
Q ss_pred cchhcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCCC--C-CcccHHHHHHHHHhc
Q 041741 240 SDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPE--R-SVVSWNVMIAGYGQK 316 (748)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 316 (748)
. +...+.........|+.. .......+...|++++|...|+...+ | +...+..+...+.+.
T Consensus 253 ------------~---A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 253 ------------A---ARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQ 316 (1157)
T ss_pred ------------H---HHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 0 112222222222223221 12345667789999999999998765 3 556788899999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCh-hhH------------HHHHHHHHhcCCHHHHHHHhccCCC---CCcchHHHHHHHHH
Q 041741 317 YQSTKAIELLQRMKSCGFEPDE-VTS------------INMLVACVRSGDIKTGREMFDSMPS---PSVSSWNAMLSSYS 380 (748)
Q Consensus 317 ~~~~~a~~~~~~m~~~g~~p~~-~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~ 380 (748)
|++++|+..|++..+....... ..+ ......+.+.|++++|...|+++.. .+...+..+...+.
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~ 396 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM 396 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999876432211 111 1123456789999999999998875 34456777889999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCChHHHHHHHHHHHhhcCC--------chhHHHHHHHHHHHh
Q 041741 381 QSENHKEAIKLFREMQFRGVKPD-RTTLAIILSSCAAMGILESGKQVHAASLKTASH--------IDNYVASGLIGIYSK 451 (748)
Q Consensus 381 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~ 451 (748)
..|++++|++.|++..+. .|+ ...+..+...+. .++.++|...+..+...... .....+..+...+..
T Consensus 397 ~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 397 ARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999999875 344 445555555553 45778888777654332111 112234556778889
Q ss_pred cCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHH
Q 041741 452 CQRNELAERVFHRIPEL---DIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVH 528 (748)
Q Consensus 452 ~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 528 (748)
.|++++|.+.+++..+. ++..+..+...|...|++++|...++++.+.. +.+...+..+...+...++.++|...+
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999998753 34466778889999999999999999998653 224444444445567789999999988
Q ss_pred HHHHHhCCCCchH---------HHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041741 529 AQIEKDGYVNDIF---------VGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIA 599 (748)
Q Consensus 529 ~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 599 (748)
+.+......+... .+..+...+...|++++|.++++. ...+...+..+...+...|++++|+..|++..+
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8765433222221 223456778899999999999984 234566778899999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCC---
Q 041741 600 SGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDD--- 673 (748)
Q Consensus 600 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~--- 673 (748)
.. +.+...+..++..+...|++++|+..++.+. ...|+ ......++.++...|++++|.++++++. .+++
T Consensus 632 ~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll---~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 707 (1157)
T PRK11447 632 RE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP---ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPS 707 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh---ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcc
Confidence 63 4456788899999999999999999999874 33444 5566778999999999999999999885 1211
Q ss_pred ---HhHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCCcc
Q 041741 674 ---PVIWEVLLSSCRLHANVRLAKRAAEELFR---LDPKNSAP 710 (748)
Q Consensus 674 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~ 710 (748)
...+..+...+...|++++|...+++++. +.|..|..
T Consensus 708 ~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 708 MESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 23556667788999999999999999986 44544443
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.2e-24 Score=237.07 Aligned_cols=650 Identities=11% Similarity=0.009 Sum_probs=391.5
Q ss_pred ccchhhhHHHHHHHHhCCCCCcchhhHHHHHHHccCCchhhhhhhhcCCC--CchhhhhHHHHHhhcCCChhHHHHhhcc
Q 041741 2 KAHVAGKLLHAHILRNGLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMPH--KDIYSWNAILSAQCKSDDLEFAYKLFDE 79 (748)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 79 (748)
.+++.|...+.+.++.. |-++..+..|...|...|++++|+..+++..+ |+-..|..++..+ +++++|..++++
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 45566777777777765 44466777888888888888888888888766 3333333333222 777777788877
Q ss_pred CCC--C-CchhHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCCcchHHHH-HHHhccccCcHHHhHHHHHHH
Q 041741 80 MPE--R-NVVSWNNLISA--------LVRNGLEEKALSVYNKMSNEGFVPTHITLASV-FKASTALLDVEHGRRCHGLVI 147 (748)
Q Consensus 80 ~~~--~-~~~~~~~l~~~--------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~ 147 (748)
+.. | +...+..+... |.+. ++|.+.++ .......|+..+.... .+.+.+.|+++.+..++..+.
T Consensus 134 l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 134 LLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 754 3 23344444333 4444 45555554 3332233344444444 777778888888888888888
Q ss_pred HHCCCCcHhHHHHHHHHHHh-cCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CCcccHH
Q 041741 148 KIGLDKNIYVANALLSLYAK-CGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVS-IDSVSLS 225 (748)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~t~~ 225 (748)
+.+.. +......|..+|.. .++ +++..+++...+.++..+..+...+.+.|+.++|..+++++...-.. |+..++.
T Consensus 210 k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 210 QQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred hcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 87643 34445556667776 366 77777766544456667777888888888888888888877654333 5555554
Q ss_pred HHHHHHhccCCCCCcchhcccccccccccchhHHHHHHHHhcCCCc-hHHHHHHHHHHHhcCChhHHHHHhccCCCCCcc
Q 041741 226 SVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEAD-LHLSNSLLDMYAKNGDMDSAEVIFSNLPERSVV 304 (748)
Q Consensus 226 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 304 (748)
..+.-.... + .... + .+.. ...++ ....-.++..+.+.++++.++++.. ....+.
T Consensus 288 ~~l~r~~~~---~----------~~~~---~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 343 (987)
T PRK09782 288 YLLSKYSAN---P----------VQAL---A-NYTV-----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE- 343 (987)
T ss_pred HHHHhccCc---h----------hhhc---c-chhh-----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-
Confidence 443332221 0 0000 0 0000 00011 1122234666667777776665533 221122
Q ss_pred cHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCCcchHHHHHHHHHcc
Q 041741 305 SWNVMIAGY--GQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQS 382 (748)
Q Consensus 305 ~~~~l~~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 382 (748)
. ..++.. ...+...++...++.|.... | .+......+.-...+.
T Consensus 344 ~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~------------------------------~~~~~l~q~~~~~~~~ 389 (987)
T PRK09782 344 M--LEERYAVSVATRNKAEALRLARLLYQQE--P------------------------------ANLTRLDQLTWQLMQN 389 (987)
T ss_pred H--HHHHHhhccccCchhHHHHHHHHHHhcC--C------------------------------CCHHHHHHHHHHHHHc
Confidence 1 122211 22244444444444444321 1 1222222223333456
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHH
Q 041741 383 ENHKEAIKLFREMQFR--GVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAER 460 (748)
Q Consensus 383 ~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 460 (748)
|+.++|.++++..... ...++......++..+.+.+.+.....+...... ++...-... ..+.-....+..
T Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~---~~~~~~~~~~~~ 462 (987)
T PRK09782 390 GQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP----LPLAEQRQW---QSQLPGIADNCP 462 (987)
T ss_pred ccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc----cccchhHHH---HhhhhhhhhhHH
Confidence 6666666666665441 1222333333555555555543333222211110 000000000 000001111222
Q ss_pred HHhhCCC---C--CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhC
Q 041741 461 VFHRIPE---L--DIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDG 535 (748)
Q Consensus 461 ~~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 535 (748)
.+..... . +...|..+..++.. +++++|+..+.+.... .|+......+...+...|+++.|...++.+...
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~- 538 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH- 538 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 2222221 1 44566666666665 7888888877777655 355554444455556788888888888876543
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 041741 536 YVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNT---VTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAI 612 (748)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 612 (748)
+|+...+..+..++.+.|++++|...++...+.++ ..+..+.......|++++|+..+++..+. .|+...+..+
T Consensus 539 -~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~L 615 (987)
T PRK09782 539 -DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVAR 615 (987)
T ss_pred -CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 34444455667778888999999999887765322 22223333444559999999999999884 5777788888
Q ss_pred HHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCC
Q 041741 613 LTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHAN 689 (748)
Q Consensus 613 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 689 (748)
..++.+.|++++|+..+++.. ...|+ ...+..++.++...|++++|...+++.. .+.++..+..+...+...|+
T Consensus 616 A~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 899999999999999999885 34555 5667788889999999999999998875 34467888889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 690 VRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 690 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
+++|+..++++++++|++..+....+++.....+++.|.+.+++.-.
T Consensus 693 ~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 693 MAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988886433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.4e-23 Score=228.95 Aligned_cols=619 Identities=11% Similarity=0.041 Sum_probs=408.9
Q ss_pred hhcCCChhHHHHhhccCCC--C-CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHh
Q 041741 64 QCKSDDLEFAYKLFDEMPE--R-NVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGR 140 (748)
Q Consensus 64 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 140 (748)
+...|++++|...|+...+ | +..++..+.+.|...|++++|+..+++..+. .|+...|..++..+ ++.+.|.
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 3444888888888887764 3 4456788888889999999999999888874 45555555544333 8888888
Q ss_pred HHHHHHHHHCCCCcHhHHHHHHHH--------HHhcCChhhHHHHHhcCCCCC--eehHHHH-HHHHHcCCCHHHHHHHH
Q 041741 141 RCHGLVIKIGLDKNIYVANALLSL--------YAKCGWTKHAVPVFEEMSEPN--EVTFTAM-MSGLAKTDRVVEALEMF 209 (748)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~~~~~~--~~~~~~l-i~~~~~~g~~~~a~~~~ 209 (748)
.+++++.+.... +..++..+... |.+.+...++++ .+...|+ ....... .+.|.+.|++++|+.++
T Consensus 129 ~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999888888633 34444444444 666655566665 3333343 4434444 78888999999999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHhc-cCCCCCcchhcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCCh
Q 041741 210 RLMIRKAVSIDSVSLSSVLGVCAR-EGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDM 288 (748)
Q Consensus 210 ~~m~~~g~~~~~~t~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 288 (748)
.++.+.+... ..-...+-.++.. .+ . +. +..++. ..+..++.+...+.+.|...|+.
T Consensus 206 ~~L~k~~pl~-~~~~~~L~~ay~q~l~-------------~-~~---a~al~~----~~lk~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 206 NEARQQNTLS-AAERRQWFDVLLAGQL-------------D-DR---LLALQS----QGIFTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHHHhcCCCC-HHHHHHHHHHHHHhhC-------------H-HH---HHHHhc----hhcccCHHHHHHHHHHHHHCCCH
Confidence 9999875333 2223333334433 11 0 11 222211 23346777888899999999999
Q ss_pred hHHHHHhccCCC-----CCcccHHHHHHHHHhcCChh-HHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHh
Q 041741 289 DSAEVIFSNLPE-----RSVVSWNVMIAGYGQKYQST-KAIELLQRMKSCGFEPDEV-TSINMLVACVRSGDIKTGREMF 361 (748)
Q Consensus 289 ~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~ 361 (748)
+.|..++..++. |...+|--. +.+.+... .+..-|.+ ...++.. ....++..+.+.++++.++++.
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLL 336 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 999999888764 222233222 33333322 11111111 0111111 1222356677888888777774
Q ss_pred ccCCCCCcchHHHHHH--HHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhh-c-CCc
Q 041741 362 DSMPSPSVSSWNAMLS--SYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKT-A-SHI 437 (748)
Q Consensus 362 ~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~ 437 (748)
.. .|.... ..+. +....+...++...+..|.+. .+-+......+--.....|+.+.|..+++..... + ...
T Consensus 337 ~~--~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (987)
T PRK09782 337 AT--LPANEM--LEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL 411 (987)
T ss_pred cC--CCcchH--HHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc
Confidence 42 222222 2222 223446777777777777665 1224455555555566788899999998888763 1 223
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHH---HHHHHHHHHCCCCC--CHHHHHHHH
Q 041741 438 DNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEA---FMFFKQMRQNEMYP--TQFSFATVL 512 (748)
Q Consensus 438 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a---~~~~~~m~~~~~~p--~~~~~~~l~ 512 (748)
+..+...++..|.+.+......++..-....+...- +.-.|+..++ ...+...... .++ +...+..+.
T Consensus 412 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG 484 (987)
T PRK09782 412 SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLA 484 (987)
T ss_pred CHHHHHHHHHHHHhCCcccchHHHHHhccccccchh------HHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHH
Confidence 455666888888888874444333332222221111 1122333333 3333333322 133 556667676
Q ss_pred HhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCHHHHHHHHHHHHHcCChhHH
Q 041741 513 SSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--KNTVTWNEMIHGYAQNGYGDEA 590 (748)
Q Consensus 513 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 590 (748)
.++.. +++++|...+....... |+......+...+...|++++|...|+++.. |+...+..+...+...|++++|
T Consensus 485 ~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA 561 (987)
T PRK09782 485 KCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAAR 561 (987)
T ss_pred HHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHH
Confidence 66665 78888999777776654 4444333445555789999999999997664 4555677778889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-
Q 041741 591 VRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP- 669 (748)
Q Consensus 591 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 669 (748)
...+++..+.+ +++...+..+...+...|++++|...+++.. ...|+...+..++.++.+.|++++|...+++..
T Consensus 562 ~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 562 DRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred HHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999864 3333344444555567799999999999885 456778889999999999999999999999886
Q ss_pred CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 670 CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 670 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
..| ++..+..+...+...|++++|+..++++++.+|+++.++..++.++...|++++|+..+++..+..
T Consensus 638 l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 638 LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 444 577888888899999999999999999999999999999999999999999999999999976544
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=2.1e-20 Score=180.10 Aligned_cols=440 Identities=14% Similarity=0.080 Sum_probs=356.7
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 041741 275 SNSLLDMYAKNGDMDSAEVIFSNLPERSVV---SWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRS 351 (748)
Q Consensus 275 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 351 (748)
...|.+-..+.|++.+|++.-..+-+.|.. ..-.+-..+.+..+.+.....-....+. .+.-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 345666677889999999987776554332 2223334555666666655443333332 233567899999999999
Q ss_pred CCHHHHHHHhccCCC---CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHH-HHhhccCChHHHHHHH
Q 041741 352 GDIKTGREMFDSMPS---PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIIL-SSCAAMGILESGKQVH 427 (748)
Q Consensus 352 ~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~ 427 (748)
|++++|+.+++.+.+ ..+..|-.+..++...|+.+.|.+.|.+..+. .|+......-+ ...-..|++.+|...+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999998875 45677888999999999999999999888764 67655444433 3344578999999999
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 041741 428 AASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIV---CWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPT 504 (748)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 504 (748)
.++++..+. -...|..|...+..+|+...|+.-|++....|+. .|-.|...|...+.++.|+..|.+.... .|+
T Consensus 208 lkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn 284 (966)
T KOG4626|consen 208 LKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN 284 (966)
T ss_pred HHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc
Confidence 988886653 3456778888899999999999999999877664 6778888999999999999999888754 564
Q ss_pred -HHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHH
Q 041741 505 -QFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHG 580 (748)
Q Consensus 505 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 580 (748)
...+..+...|..+|..+.|+..+++..+.. +.-+..|+.+..++-..|++.+|.+.+.+... ....+.+.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4567777788899999999999999988764 22467899999999999999999999998764 356788899999
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCCh
Q 041741 581 YAQNGYGDEAVRLYKDMIASGVKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHF 658 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 658 (748)
+...|.++.|..+|....+ +.|.- ..++.|...|-.+|++++|+..+++.. .++|+ .+.+..++..|...|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999998 56665 578899999999999999999999885 78898 67899999999999999
Q ss_pred HHHHHHHhhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHH
Q 041741 659 HEAEMLIDEMP-CKDD-PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDD 726 (748)
Q Consensus 659 ~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 726 (748)
+.|...+.+.. +.|. ......|...+..+|+..+|++.|+.++.++|+.|.++-.++.+..---+|.+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999998886 6665 67788899999999999999999999999999999999999998776666654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=9.6e-21 Score=182.44 Aligned_cols=420 Identities=12% Similarity=0.073 Sum_probs=338.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CCcchHHHHHHHHHcc
Q 041741 306 WNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPS---PSVSSWNAMLSSYSQS 382 (748)
Q Consensus 306 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~ 382 (748)
...+..-..+.|++.+|++.-...-... +.+..+...+-..+....+++....--..... .-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3445566778899999998877655443 12222222233345555555544332222222 4457899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHH
Q 041741 383 ENHKEAIKLFREMQFRGVKPD-RTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERV 461 (748)
Q Consensus 383 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 461 (748)
|++++|+.+++.+.+. +|+ ...|..+..++...|+.+.|...+...++..+.. ..+...+.......|++++|...
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l-~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL-YCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch-hhhhcchhHHHHhhcccchhHHH
Confidence 9999999999999886 554 5678888889999999999999999998866432 22334456667779999999999
Q ss_pred HhhCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCC
Q 041741 462 FHRIPELDI---VCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPT-QFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYV 537 (748)
Q Consensus 462 ~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 537 (748)
+.+..+.++ +.|+.|...+..+|+...|+..|.+..+. .|+ ...|..|...|...+.+++|...+....... +
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 988875443 57999999999999999999999999854 554 4578888899999999999998888776653 3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041741 538 NDIFVGSALIEMYCKCGDIYGARQFFDMMHG--K-NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILT 614 (748)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 614 (748)
.....+..+...|...|.++-|...+++..+ | -+..|+.|..++...|++.+|...+++.+... +--....+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 3566677788888899999999999998774 4 46789999999999999999999999999852 334467899999
Q ss_pred HhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCC-HhHHHHHHHHHHhcCCHH
Q 041741 615 ACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDD-PVIWEVLLSSCRLHANVR 691 (748)
Q Consensus 615 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~ 691 (748)
.+...|.++.|..+|.... .+.|. ....+.|+..|...|++++|+.-+++.. ++|. .+.+..+...|...|++.
T Consensus 363 i~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999999774 66777 5668899999999999999999999886 6775 688999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 692 LAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 692 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.|.+.+.+++..+|.-+.++..|+.+|...|+..+|+.-|+...+
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998654
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=7.7e-18 Score=171.63 Aligned_cols=461 Identities=12% Similarity=0.096 Sum_probs=332.0
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHhccCCCCC------cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhh--
Q 041741 269 EADLHLSNSLLDMYAKNGDMDSAEVIFSNLPERS------VVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVT-- 340 (748)
Q Consensus 269 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-- 340 (748)
+.++.+.+.|...|...|++..+..+...+...+ ..+|-.+.++|-..|++++|...|-+.... .|+..+
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccc
Confidence 4567778888888889999998888876655432 235778889999999999999998776654 444433
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCC---CCcchHHHHHHHHHccC----CHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 041741 341 SINMLVACVRSGDIKTGREMFDSMPS---PSVSSWNAMLSSYSQSE----NHKEAIKLFREMQFRGVKPDRTTLAIILSS 413 (748)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 413 (748)
+.-+...+.+.|+++.+...|+.+.. .+..+..+|...|...+ ..+.|..++.+..+.- +.|...|..+...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 44566688899999999999988875 23344555555565553 4566777776666542 3445555555555
Q ss_pred hhccCChHHHHHHHHH----HHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCC-------CCcc------hHHHH
Q 041741 414 CAAMGILESGKQVHAA----SLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPE-------LDIV------CWNSM 476 (748)
Q Consensus 414 ~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~------~~~~l 476 (748)
+.... +.....++.. +...+..+.+.+.+.+...+...|.++.|...|..... ++.. +--.+
T Consensus 424 ~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 54443 3333555544 34556667888999999999999999999999887652 1221 12234
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 041741 477 IAGLSLNSLDIEAFMFFKQMRQNEMYPTQF-SFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGD 555 (748)
Q Consensus 477 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 555 (748)
...+-..++.+.|.+.|..+... .|+-. .|..+.-.....++...|...+....... ..++..++.+...+.+..+
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 45566677899999999999876 56544 34344323334567788888888777653 3455566667778888888
Q ss_pred HHHHHHHhhhcCC-----CCHHHHHHHHHHHHH------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 041741 556 IYGARQFFDMMHG-----KNTVTWNEMIHGYAQ------------NGYGDEAVRLYKDMIASGVKPDDITFVAILTACSH 618 (748)
Q Consensus 556 ~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 618 (748)
+..|.+-|..+.+ +|+.+.-.|.+.+.. .+..++|+++|.+.+... +-|...-+.+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 8888886655442 466666666665543 245678999999988863 4566677888888999
Q ss_pred CCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCCHhHHHHHHHHHHhcCCHHHHH
Q 041741 619 SGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP----CKDDPVIWEVLLSSCRLHANVRLAK 694 (748)
Q Consensus 619 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~ 694 (748)
.|++.+|..+|.+.+.... ...++|..++.+|...|++-.|+++|+... -..++.++..|..++...|.+.+|.
T Consensus 659 kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999954432 345568899999999999999999998774 3457889999999999999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHhHHHhhcC-------------------ChHHHHHHHHHHHhcCC
Q 041741 695 RAAEELFRLDPKNSAPYSLLANIYSSLG-------------------RWDDLRAVRELMSENCI 739 (748)
Q Consensus 695 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------------------~~~~A~~~~~~~~~~~~ 739 (748)
+.+..++...|.|+.....++-+..+.+ ..+.|.++|+.|...+-
T Consensus 737 ~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 737 EALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999888888765543 34567777777766443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.8e-18 Score=185.18 Aligned_cols=418 Identities=13% Similarity=0.020 Sum_probs=282.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CCcchHHHHHHHHHcc
Q 041741 306 WNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPS---PSVSSWNAMLSSYSQS 382 (748)
Q Consensus 306 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~ 382 (748)
+......+.+.|++++|+..|++.... .|+...|..+..++...|++++|+..++...+ .+...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 344556677778888888888877653 56667777777788888888888888877664 2344677777888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHH
Q 041741 383 ENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVF 462 (748)
Q Consensus 383 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 462 (748)
|++++|+..+......+- .+......++..... ..+........+.... +......+.. |...........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhh
Confidence 888888887766554321 111111111111111 1111222222222211 1111111111 11111111111112
Q ss_pred hhCCCCCcc---hHHHHHHH---HHhCCCchHHHHHHHHHHHCC-CCC-CHHHHHHHHHhhcCCCCchhHHHHHHHHHHh
Q 041741 463 HRIPELDIV---CWNSMIAG---LSLNSLDIEAFMFFKQMRQNE-MYP-TQFSFATVLSSCAKLSSSFQGRQVHAQIEKD 534 (748)
Q Consensus 463 ~~~~~~~~~---~~~~li~~---~~~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 534 (748)
....+.+.. .+..+... ....+++++|++.|+.....+ ..| ....+..+...+...|+++.|...++...+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 211111111 11111111 123467899999999998764 234 3456777777888899999999999998876
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 041741 535 GYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVA 611 (748)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 611 (748)
. +.....+..+..++...|++++|...|+...+ .+...|..+...+...|++++|+..|++.++.. +.+...+..
T Consensus 361 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 361 D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 4 23466778888889999999999999997753 467889999999999999999999999999863 344567778
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCC-Hh-------HHHHHHH
Q 041741 612 ILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDD-PV-------IWEVLLS 682 (748)
Q Consensus 612 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~-------~~~~l~~ 682 (748)
+...+...|++++|+..+++.... .+.+...+..++.++...|++++|.+.+++.. ..|+ .. .+.....
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 888999999999999999988532 22336778889999999999999999998864 3332 11 1122222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 683 SCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 683 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.+...|++++|...++++++++|++..++..+++++...|++++|..+|+++.+
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344569999999999999999999999999999999999999999999998765
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=8.4e-17 Score=164.18 Aligned_cols=433 Identities=12% Similarity=0.050 Sum_probs=316.2
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCCHHHHHHHhccCCC--CCcch--HHH
Q 041741 301 RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFE--PDEVTSINMLVACVRSGDIKTGREMFDSMPS--PSVSS--WNA 374 (748)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~--~~~ 374 (748)
.|+...+.+...|.-.|++..++.+...+...... .-...|-.+.+++...|+++.|...|-+..+ ++..+ +--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 57888999999999999999999999998875411 2234578889999999999999999987765 33333 445
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccC----ChHHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 041741 375 MLSSYSQSENHKEAIKLFREMQFRGVKPD-RTTLAIILSSCAAMG----ILESGKQVHAASLKTASHIDNYVASGLIGIY 449 (748)
Q Consensus 375 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 449 (748)
+...+.+.|+.+.+...|+...+. .|+ ..+...+...|...+ ..+.|..+.....+.. ..+...|-.+..++
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 778999999999999999999876 455 455555555555554 4566666666666655 33666777777777
Q ss_pred HhcCChH------HHHHHHhhCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC---CCCCCH-----H-HHHHHHH
Q 041741 450 SKCQRNE------LAERVFHRIP-ELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQN---EMYPTQ-----F-SFATVLS 513 (748)
Q Consensus 450 ~~~~~~~------~a~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~-----~-~~~~l~~ 513 (748)
....-+. .|..++.... ...+...|.+.......|++.+|...|...... ...++. . +--.+..
T Consensus 425 e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 425 EQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 6555443 3443333332 345667899999999999999999999988765 122332 1 2223455
Q ss_pred hhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHHcCChhHH
Q 041741 514 SCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMH---GKNTVTWNEMIHGYAQNGYGDEA 590 (748)
Q Consensus 514 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 590 (748)
.....++.+.|.+.+..+.+.. +.-+..|-.+.-+....++..+|...+..+. ..++..+.-+...+.+...+..|
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 5667789999999999988763 1122223333322233467889999998776 36788888889899999999889
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHhc------------CCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCC
Q 041741 591 VRLYKDMIASG-VKPDDITFVAILTACS------------HSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGH 657 (748)
Q Consensus 591 ~~~~~~m~~~~-~~p~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 657 (748)
.+-|+...+.- ..+|..+...|...|. ..+..++|+.+|.+..+ ..+-+...-+.++-+++..|+
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccC
Confidence 88777666532 2356666666666552 22356788888887741 223345666778889999999
Q ss_pred hHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-C-CCCCcchHHHhHHHhhcCChHHHHHHHHH
Q 041741 658 FHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRL-D-PKNSAPYSLLANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 658 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (748)
+.+|..+|.+.. ....+++|..++.+|...|++..|++.|+..++. . .+++.++..|+.+++..|++.+|.+.+..
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999886 3346789999999999999999999999999985 3 34678999999999999999999999887
Q ss_pred HHhcCC
Q 041741 734 MSENCI 739 (748)
Q Consensus 734 ~~~~~~ 739 (748)
.+...+
T Consensus 742 a~~~~p 747 (1018)
T KOG2002|consen 742 ARHLAP 747 (1018)
T ss_pred HHHhCC
Confidence 665433
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=9.1e-19 Score=179.75 Aligned_cols=268 Identities=12% Similarity=0.067 Sum_probs=180.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 041741 473 WNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPT---QFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEM 549 (748)
Q Consensus 473 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (748)
+..+...+...|++++|..+++.+...+..++ ..++..+...+...|+++.|..++..+.+.. +.+..++..++.+
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 150 (389)
T PRK11788 72 HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEI 150 (389)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 33344444444555555555544443321111 1234444555555555555555555554431 2344555566666
Q ss_pred HHhcCCHHHHHHHhhhcCC--CC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCC
Q 041741 550 YCKCGDIYGARQFFDMMHG--KN------TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGL 621 (748)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 621 (748)
+.+.|++++|.+.++.+.+ |+ ...+..++..+...|++++|..+++++.+.. +.+...+..+...+...|+
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCC
Confidence 6666666666666665543 11 1234567777888899999999999988753 3345577778888889999
Q ss_pred hHHHHHHHHHhhhhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 041741 622 VDVGVEIFNSMQLDHGVEPI--LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVLLSSCRLHANVRLAKRAAE 698 (748)
Q Consensus 622 ~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 698 (748)
+++|..+++++... .|+ ...+..++.+|...|++++|...++++. ..|+...+..++..+...|++++|...++
T Consensus 230 ~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 230 YAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999988422 333 3557788899999999999999998875 55666666778888999999999999999
Q ss_pred HHHhcCCCCCcchHHHhHHHhh--cCChHHHHHHHHHHHhcCCCCCCCC
Q 041741 699 ELFRLDPKNSAPYSLLANIYSS--LGRWDDLRAVRELMSENCIVKDPAY 745 (748)
Q Consensus 699 ~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~ 745 (748)
++++..|+++.....+...+.. .|+.++|...+++|.+++++++|.+
T Consensus 307 ~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 307 EQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 9999999776444344433322 5699999999999999999999974
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=6.6e-17 Score=173.53 Aligned_cols=345 Identities=10% Similarity=0.007 Sum_probs=244.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHh
Q 041741 372 WNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSK 451 (748)
Q Consensus 372 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 451 (748)
...++..+.+.|+++.|..+++...... +-+...+..+..++...|+++.|...++.+....+. +...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 3445566677788888888877776652 222334444455566677788888777777776544 44556667777888
Q ss_pred cCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHH
Q 041741 452 CQRNELAERVFHRIPEL---DIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVH 528 (748)
Q Consensus 452 ~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 528 (748)
.|++++|...+++.... ++..+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHH
Confidence 88888888888777642 34467777888888888888888888776653222 2222222 3467788888888888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhH----HHHHHHHHHHcC
Q 041741 529 AQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDE----AVRLYKDMIASG 601 (748)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~ 601 (748)
+.+.+....++......+..++...|++++|...++.... .+...+..+...+...|++++ |...++++.+..
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 8877664334444455566778888999999988887664 356677788888899998885 788999988852
Q ss_pred CCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCH-hHHH
Q 041741 602 VKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDP-VIWE 678 (748)
Q Consensus 602 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~ 678 (748)
+.+...+..+...+...|++++|+..+++... ..|+ ...+..++.++.+.|++++|...++++. ..|+. ..+.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 33456788888888999999999999988852 3454 4556678888999999999999988875 44543 3333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 679 VLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 679 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.+...+...|++++|...++++++.+|++. ..++++|...|....+
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHH
Confidence 445667888999999999999999998764 2344455555555444
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.7e-16 Score=174.34 Aligned_cols=400 Identities=9% Similarity=0.001 Sum_probs=251.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CCcchHHHHHHHHHcc
Q 041741 306 WNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPS---PSVSSWNAMLSSYSQS 382 (748)
Q Consensus 306 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~ 382 (748)
..-.+......|+.++|++++.+..... +.+...+..+..++...|++++|...|+.... .+...+..+...+...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4445556667777777777777776522 23344566666677777777777777776442 3344555666667777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHH
Q 041741 383 ENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVF 462 (748)
Q Consensus 383 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 462 (748)
|++++|+..++++.+. .|+...+..+..++...|+.+.|...++.+.+..+. +......+..++...+..+.|+..+
T Consensus 97 g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 7777777777777665 333222555555666667777777777777666554 2333334455555556666666666
Q ss_pred hhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhh-----cCCCCc---hhHHHHHHHHHHh
Q 041741 463 HRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSC-----AKLSSS---FQGRQVHAQIEKD 534 (748)
Q Consensus 463 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~~~~---~~a~~~~~~~~~~ 534 (748)
+.+.. ++.....+ . ......++... ...+.+ +.|...++.+.+.
T Consensus 174 ~~~~~-~p~~~~~l-~--------------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 174 DDANL-TPAEKRDL-E--------------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred HhCCC-CHHHHHHH-H--------------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 55543 21100000 0 00000111111 111122 4455555555543
Q ss_pred -CCCCchH-HH----HHHHHHHHhcCCHHHHHHHhhhcCCCC---HH-HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 041741 535 -GYVNDIF-VG----SALIEMYCKCGDIYGARQFFDMMHGKN---TV-TWNEMIHGYAQNGYGDEAVRLYKDMIASGVKP 604 (748)
Q Consensus 535 -~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 604 (748)
...|+.. .+ ...+..+...|++++|...|+.+.+.+ +. ....+...|...|++++|+.+|+++.+.. |
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p 303 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--E 303 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--C
Confidence 1222211 11 111233456688888888888876421 11 12224667888888888888888877643 2
Q ss_pred C-----HHHHHHHHHHhcCCCChHHHHHHHHHhhhhhC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHh
Q 041741 605 D-----DITFVAILTACSHSGLVDVGVEIFNSMQLDHG----------VEPI---LDHYTCMIDCLGRAGHFHEAEMLID 666 (748)
Q Consensus 605 ~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 666 (748)
. ......+..++...|++++|..+++.+..... -.|+ ...+..++..+...|++++|.+.++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 23455666677888888888888888743211 1123 2244567888889999999999999
Q ss_pred hCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 667 EMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 667 ~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
++. .+.++..+..++..+...|++++|++.++++++++|+++..+..++.++...|++++|+..++.+.+..+
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 875 4446788888888999999999999999999999999999999999999999999999999998876544
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=9.1e-17 Score=172.45 Aligned_cols=353 Identities=11% Similarity=0.008 Sum_probs=276.7
Q ss_pred HccCCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHH
Q 041741 380 SQSENHKEAIKLFREMQFRG--VKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNEL 457 (748)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 457 (748)
.+..+|+..--.+....++. -.-+......++..+...|+++.|..++...+...+.... ....++.+....|+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHH
Confidence 45556655444444332210 1122334556677888999999999999999988777544 44445566677999999
Q ss_pred HHHHHhhCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHh
Q 041741 458 AERVFHRIPEL---DIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKD 534 (748)
Q Consensus 458 a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 534 (748)
|...++++... +...+..+...+...|++++|...+++..... +.+...+..+...+...|+++.|...+..+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999998753 44567888889999999999999999998752 335667788889999999999999999988776
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 041741 535 GYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGK----NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFV 610 (748)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 610 (748)
...+. ..+..+ ..+...|++++|...++.+.+. +...+..++..+...|++++|+..++++.+.. +.+...+.
T Consensus 174 ~P~~~-~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 VPPRG-DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred CCCCH-HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 54333 333333 3478899999999999987642 33344556778899999999999999999864 44556788
Q ss_pred HHHHHhcCCCChHH----HHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHH
Q 041741 611 AILTACSHSGLVDV----GVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSS 683 (748)
Q Consensus 611 ~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 683 (748)
.+...+...|++++ |...++++. ...|+ ...+..++..+...|++++|...+++.. ..| ++..+..+...
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 89999999999986 799999885 34455 6678899999999999999999999885 334 57778888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCCC
Q 041741 684 CRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCIV 740 (748)
Q Consensus 684 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 740 (748)
+...|++++|...++++++.+|+++..+..++.++...|++++|...|+++.+..++
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 999999999999999999999988877778899999999999999999998776544
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.7e-15 Score=166.43 Aligned_cols=408 Identities=9% Similarity=0.023 Sum_probs=285.1
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHhccCCC-C--CcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 041741 269 EADLHLSNSLLDMYAKNGDMDSAEVIFSNLPE-R--SVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINML 345 (748)
Q Consensus 269 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 345 (748)
+.++....-.+.+....|+.++|++++..... . +...+..+...+...|++++|.++|++..+.. +.+......+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34555666778888999999999999998764 2 33358889999999999999999999988753 23455566777
Q ss_pred HHHHhcCCHHHHHHHhccCCC---CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccCChH
Q 041741 346 VACVRSGDIKTGREMFDSMPS---PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDR-TTLAIILSSCAAMGILE 421 (748)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~ 421 (748)
..+...|+.++|...++++.. .+.. +..+...+...|+.++|+..++++.+. .|+. ..+..+..++...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChH
Confidence 788999999999999998865 3445 777888999999999999999999986 4554 44455666777788888
Q ss_pred HHHHHHHHHHhhcCCchhH------HHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCc---hHHHHH
Q 041741 422 SGKQVHAASLKTASHIDNY------VASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLD---IEAFMF 492 (748)
Q Consensus 422 ~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~ 492 (748)
.|...++.+.. .|+.. ....++..+.. ......+++ ++|++.
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~--------------------------~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFM--------------------------PTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc--------------------------cccChhHHHHHHHHHHHH
Confidence 88888776554 22210 00111111100 000111122 556666
Q ss_pred HHHHHHC-CCCCCHH-HHH----HHHHhhcCCCCchhHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCHHHHHHHhhh
Q 041741 493 FKQMRQN-EMYPTQF-SFA----TVLSSCAKLSSSFQGRQVHAQIEKDGYV-NDIFVGSALIEMYCKCGDIYGARQFFDM 565 (748)
Q Consensus 493 ~~~m~~~-~~~p~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (748)
++.+.+. ...|+.. .+. ..+..+...|+.++|...|+.+.+.+.+ |+- ....+..+|...|++++|...|+.
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 6666643 1222211 111 1122334557778888888877776532 221 222246678888888888888887
Q ss_pred cCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHhcCCCChHH
Q 041741 566 MHGKN-------TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGV-----------KPDD---ITFVAILTACSHSGLVDV 624 (748)
Q Consensus 566 ~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~~~~~~~ 624 (748)
+.+.+ ......+..++...|++++|..+++++..... .|+. ..+..+...+...|++++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 65321 23455566677888999999999988887521 1232 245567778889999999
Q ss_pred HHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041741 625 GVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFR 702 (748)
Q Consensus 625 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 702 (748)
|+.+++++... .+.+...+..++.++...|++++|.+.+++.. ..| ++..+...+..+...|++++|+..++++++
T Consensus 378 A~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 378 AEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999998533 23336778889999999999999999999886 445 467777778888999999999999999999
Q ss_pred cCCCCCcchH
Q 041741 703 LDPKNSAPYS 712 (748)
Q Consensus 703 ~~p~~~~~~~ 712 (748)
..|+++.+..
T Consensus 456 ~~Pd~~~~~~ 465 (765)
T PRK10049 456 REPQDPGVQR 465 (765)
T ss_pred hCCCCHHHHH
Confidence 9998875543
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.3e-15 Score=164.65 Aligned_cols=419 Identities=11% Similarity=-0.032 Sum_probs=288.0
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 041741 275 SNSLLDMYAKNGDMDSAEVIFSNLPE--RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSG 352 (748)
Q Consensus 275 ~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 352 (748)
+......+.+.|+++.|...|+.... |+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 44567788899999999999998654 666788889999999999999999999998764 224567778888999999
Q ss_pred CHHHHHHHhccCCC---CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHH
Q 041741 353 DIKTGREMFDSMPS---PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAA 429 (748)
Q Consensus 353 ~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 429 (748)
++++|...|..+.. .+......++..+.. ..+........+.. +++..... .+..+............+..
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVT-FVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHH-HHHHHHHHccCCcchhhhhc
Confidence 99999987765432 111111122221111 12222222222221 11111111 11111111111111111111
Q ss_pred HHhhcCCchhHHHHHHHHH---HHhcCChHHHHHHHhhCCCC------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 041741 430 SLKTASHIDNYVASGLIGI---YSKCQRNELAERVFHRIPEL------DIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNE 500 (748)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 500 (748)
..+..... ...+..+... ....+++++|.+.|+...+. ....++.+...+...|++++|+..|++....
T Consensus 283 ~~~~~~~~-~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l- 360 (615)
T TIGR00990 283 SNELDEET-GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL- 360 (615)
T ss_pred cccccccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 11111000 0001111111 12346788999998887643 2345777788888999999999999999865
Q ss_pred CCCC-HHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHH
Q 041741 501 MYPT-QFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNE 576 (748)
Q Consensus 501 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 576 (748)
.|+ ...|..+...+...|+++.|...++.+.+.. +.++.++..+..++...|++++|...|++..+ .+...+..
T Consensus 361 -~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 361 -DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 454 5577888888899999999999999987764 44678888999999999999999999998764 35677888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCCh-----hH---HHHH
Q 041741 577 MIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPIL-----DH---YTCM 648 (748)
Q Consensus 577 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~---~~~l 648 (748)
+..++.+.|++++|+..+++.++. .+.+...+..+...+...|++++|+..|++... +.|+. .. +...
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHH
Confidence 899999999999999999999985 244567888999999999999999999998742 23321 11 1112
Q ss_pred HHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 041741 649 IDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS 708 (748)
Q Consensus 649 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 708 (748)
...+...|++++|..++++.. ..| +...+..++..+...|++++|...+++++++.+...
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 223344699999999999864 444 456788889999999999999999999999987533
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=7.7e-17 Score=165.48 Aligned_cols=300 Identities=11% Similarity=0.025 Sum_probs=150.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC-CC------cchHHHHHHHHHcc
Q 041741 310 IAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPS-PS------VSSWNAMLSSYSQS 382 (748)
Q Consensus 310 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~------~~~~~~ll~~~~~~ 382 (748)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|...++.+.. ++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344566777888888888877653 12334555666666666666666666665543 11 12345556666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHH
Q 041741 383 ENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVF 462 (748)
Q Consensus 383 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 462 (748)
|++++|..+|+++.+. -+++..++..+...+...|+++.|.+.+..+.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 6666666666666553 123344455555555555555555555555544332211100
Q ss_pred hhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHH
Q 041741 463 HRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFV 542 (748)
Q Consensus 463 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 542 (748)
....+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+.+......+
T Consensus 179 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 179 ------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred ------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 00012233334444455555555555544332 11223334444444455555555555555444332222334
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--
Q 041741 543 GSALIEMYCKCGDIYGARQFFDMMHG--KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSH-- 618 (748)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 618 (748)
++.++.+|.+.|++++|...++.+.+ |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhcc
Confidence 44555555555555555555555432 44444455555555555555555555555553 4555555544444332
Q ss_pred -CCChHHHHHHHHHhhhhhCCCCCh
Q 041741 619 -SGLVDVGVEIFNSMQLDHGVEPIL 642 (748)
Q Consensus 619 -~~~~~~A~~~~~~~~~~~~~~~~~ 642 (748)
.|+.++++.+++++. ..++.|++
T Consensus 330 ~~g~~~~a~~~~~~~~-~~~~~~~p 353 (389)
T PRK11788 330 EEGRAKESLLLLRDLV-GEQLKRKP 353 (389)
T ss_pred CCccchhHHHHHHHHH-HHHHhCCC
Confidence 335555555555552 33444443
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=6.8e-15 Score=158.01 Aligned_cols=420 Identities=10% Similarity=0.055 Sum_probs=252.6
Q ss_pred HHHhcCChhHHHHHhccCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhH---HHHHHHHHhcCCH
Q 041741 281 MYAKNGDMDSAEVIFSNLPERSVV---SWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTS---INMLVACVRSGDI 354 (748)
Q Consensus 281 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~~~~ 354 (748)
...+.|+++.|...|++..+.++. ....++..+...|+.++|+..+++.. .|+...+ ..+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 456889999999999988764333 13377888888899999999999887 3332222 2234467778999
Q ss_pred HHHHHHhccCCC---CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHH
Q 041741 355 KTGREMFDSMPS---PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASL 431 (748)
Q Consensus 355 ~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 431 (748)
++|.++|+++.+ .++..+..++..+...++.++|++.++.+.+. .|+...+..+...+...++...|.+.++.++
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999998875 34455667778888899999999999988776 5666666444444444566656888888888
Q ss_pred hhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCC-CcchH--------HHHHHHH-H----hCCC---chHHHHHHH
Q 041741 432 KTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPEL-DIVCW--------NSMIAGL-S----LNSL---DIEAFMFFK 494 (748)
Q Consensus 432 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~--------~~li~~~-~----~~~~---~~~a~~~~~ 494 (748)
+..+. +...+..+..+..+.|-...|.++..+-+.. +...+ ..++..- . ...+ .+.|+.-++
T Consensus 197 ~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 87644 5666777778888888888888888775531 11111 1111100 0 1111 134455555
Q ss_pred HHHHC-CCCCCH-HHH----HHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC
Q 041741 495 QMRQN-EMYPTQ-FSF----ATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG 568 (748)
Q Consensus 495 ~m~~~-~~~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (748)
.+... +..|.. .-| .--+-++...++...++..++.+...+.+....+...+..+|...+++++|..+++.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 54441 111221 111 123345556666666666666666666555555666666666666667777666666532
Q ss_pred C---------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-----------CCCH--H-HHHHHHHHhcCCCChHHH
Q 041741 569 K---------NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGV-----------KPDD--I-TFVAILTACSHSGLVDVG 625 (748)
Q Consensus 569 ~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~--~-~~~~l~~~~~~~~~~~~A 625 (748)
+ +......|.-++...+++++|..+++++.+.-. .||. . .+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 1 122234556666666666666666666665210 1111 1 223344445566666666
Q ss_pred HHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041741 626 VEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRL 703 (748)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 703 (748)
++.++++... .+-|......+++++...|.+.+|...++... ..| +..+....+..+...+++.+|....+.+++.
T Consensus 436 e~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 436 QKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 6666666321 22334555566666666666666666665543 233 3344444555555666666666666666666
Q ss_pred CCCCCc
Q 041741 704 DPKNSA 709 (748)
Q Consensus 704 ~p~~~~ 709 (748)
.|+++.
T Consensus 514 ~Pe~~~ 519 (822)
T PRK14574 514 SPEDIP 519 (822)
T ss_pred CCCchh
Confidence 665553
No 26
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.78 E-value=2.3e-14 Score=144.86 Aligned_cols=679 Identities=12% Similarity=0.033 Sum_probs=380.4
Q ss_pred hHHHHHHHHhCCCCCcchhhHHHHHHHccCCchhhhhhhhcCCCC----chhhhhHHHHHhhcCCChhHHHHhhccCCCC
Q 041741 8 KLLHAHILRNGLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMPHK----DIYSWNAILSAQCKSDDLEFAYKLFDEMPER 83 (748)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 83 (748)
..+|+.+...|..|+..+|.+||--|+..|+.+.|- +|.-|.-. +...++.++..-.+.++.+.+. +|
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 368999999999999999999999999999999999 88777642 3456777777777777755544 68
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHH-HHh-------CCCCCCcchHHHHHHHhccccCcHHH---------hHHHHHH
Q 041741 84 NVVSWNNLISALVRNGLEEKALSVYNK-MSN-------EGFVPTHITLASVFKASTALLDVEHG---------RRCHGLV 146 (748)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~-------~~~~p~~~~~~~ll~~~~~~~~~~~a---------~~~~~~~ 146 (748)
.+.+|..|..+|.++||... ++..++ |.. .|+..-..-+...++++ .+-...+ +.+++..
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~--p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCC--PHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccC--cccchhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999876 333333 322 22221111121122222 1111111 2233334
Q ss_pred HHHCC-CCcHhHHHH---HHHHHHhc-CChhhHHHHHhcCCC-CCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 041741 147 IKIGL-DKNIYVANA---LLSLYAKC-GWTKHAVPVFEEMSE-PNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSID 220 (748)
Q Consensus 147 ~~~~~-~~~~~~~~~---li~~~~~~-g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 220 (748)
.+.+. .|...-++. .++-.... ..+++-........+ ++..+|..++..-...|+.+.|..++..|++.|++.+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 44331 111111111 12222111 122233333333333 8999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhccCCCCCcchhcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCCC
Q 041741 221 SVSLSSVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPE 300 (748)
Q Consensus 221 ~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 300 (748)
.+-|-.++-+ . +.... .+.+...|...|+.|+..|+...+-.+..+|....+.. ..
T Consensus 239 ~HyFwpLl~g---~-------------~~~q~---~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e----~s- 294 (1088)
T KOG4318|consen 239 AHYFWPLLLG---I-------------NAAQV---FEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE----GS- 294 (1088)
T ss_pred cccchhhhhc---C-------------ccchH---HHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc----cc-
Confidence 9988888876 2 33333 77888889999999999999877777666554222211 11
Q ss_pred CCcccHHHHHHHHHhcC-----Ch-----hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC----
Q 041741 301 RSVVSWNVMIAGYGQKY-----QS-----TKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPS---- 366 (748)
Q Consensus 301 ~~~~~~~~l~~~~~~~~-----~~-----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---- 366 (748)
++...+++-..+-+..| +. .-....+.+..-.|.......|...+. ....|.-+...++-..+..
T Consensus 295 q~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r 373 (1088)
T KOG4318|consen 295 QLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLR 373 (1088)
T ss_pred chhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccc
Confidence 22222223232222233 11 112222333233344444433333333 3336666666666655543
Q ss_pred ---CCcchHHHHHHHHHccCC----------------------HHHHHHHHHHHHHcCCCCCHh----------------
Q 041741 367 ---PSVSSWNAMLSSYSQSEN----------------------HKEAIKLFREMQFRGVKPDRT---------------- 405 (748)
Q Consensus 367 ---~~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~m~~~g~~p~~~---------------- 405 (748)
.++..|..++.-|.+.-. ..+..+++... .|+..
T Consensus 374 ~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~h 448 (1088)
T KOG4318|consen 374 DSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSH 448 (1088)
T ss_pred cCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhccc
Confidence 234445554444433211 11111111111 12111
Q ss_pred ------------hHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCc---
Q 041741 406 ------------TLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDI--- 470 (748)
Q Consensus 406 ------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 470 (748)
.-..++..|++.-+..++....+.....- -...|..+++.+...+..+.|..+..++..++.
T Consensus 449 e~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~ 525 (1088)
T KOG4318|consen 449 EPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIH 525 (1088)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhh
Confidence 11122223333333333332222221111 124567788888888888888888888876543
Q ss_pred ---chHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCC-CHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHH
Q 041741 471 ---VCWNSMIAGLSLNSLDIEAFMFFKQMRQNE-MYP-TQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSA 545 (748)
Q Consensus 471 ---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 545 (748)
.-+..+.+.+.+.+....+..++.++.+.- ..| ...++-.+++.....|+.+...++++.+...|+..+ ..
T Consensus 526 Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gP 601 (1088)
T KOG4318|consen 526 LDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GP 601 (1088)
T ss_pred cccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----cc
Confidence 457778888888888899999998887732 122 244566777888888999999999888888876653 34
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHH--cCChhHHHHHHHHH---HHcCC---------CCCHHH
Q 041741 546 LIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQ--NGYGDEAVRLYKDM---IASGV---------KPDDIT 608 (748)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m---~~~~~---------~p~~~~ 608 (748)
++....+.++...|.+.++...+ +.+.....+.+.+.+ ..+++.+..+-... .+.|- .|...+
T Consensus 602 l~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~ 681 (1088)
T KOG4318|consen 602 LWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRC 681 (1088)
T ss_pred ceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccc
Confidence 55556677888888877765542 333222222222211 11122221111100 00000 000000
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcC
Q 041741 609 FVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHA 688 (748)
Q Consensus 609 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~ 688 (748)
-+.- .-|...|...--....+.+ .. ......+...|.+.|+++.|..++.++...|.+.....++..+...+
T Consensus 682 r~~R-Dr~~de~e~~~lEll~elt-~~------lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n 753 (1088)
T KOG4318|consen 682 RNGR-DRDTDEGEIVPLELLLELT-HE------LGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMN 753 (1088)
T ss_pred cCCC-ccccccCccccHHHHHHHH-hH------hHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhc
Confidence 0000 1112222222222222222 11 11123467788888888888888888887788888777777776544
Q ss_pred ---CHHHHHHHHHHHHhcCCCCCcc---hHHHhHHHhhcCChHHHHHHHHHHHhcCCCCC
Q 041741 689 ---NVRLAKRAAEELFRLDPKNSAP---YSLLANIYSSLGRWDDLRAVRELMSENCIVKD 742 (748)
Q Consensus 689 ---~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 742 (748)
|+-++....+++-+..|..+.+ +.--+.+..+....+-|.+.+++..++.+...
T Consensus 754 ~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~t 813 (1088)
T KOG4318|consen 754 EEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVST 813 (1088)
T ss_pred hhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCc
Confidence 5666777777777776654432 33333444444555577778888777655443
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=5.3e-14 Score=143.18 Aligned_cols=199 Identities=9% Similarity=0.026 Sum_probs=150.3
Q ss_pred CcchhhHHHHHHHccCCchhhhhhhhcCCC---CchhhhhHHHHHhhcCCChhHHHHhhccC---CCCCchhHHHHHHHH
Q 041741 22 DTFLCNRLIELYSKCNNTHSAQHLFDKMPH---KDIYSWNAILSAQCKSDDLEFAYKLFDEM---PERNVVSWNNLISAL 95 (748)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~ 95 (748)
+++-.-..+......|+.++|.+++.+++. .+...|..|...|-++|+.+++...+--. ...|...|-.+....
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 344444555556666999999999999876 34568999999999999999988766433 235667888888989
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHH----HHHHHhcCCh
Q 041741 96 VRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANAL----LSLYAKCGWT 171 (748)
Q Consensus 96 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~ 171 (748)
.+.|++.+|.-+|.+.++.. +++...+---...|-+.|+...|...+..+.....+.|..-...+ ++.+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999998863 455555555667788899999999999999988765555444444 4445566777
Q ss_pred hhHHHHHhcCCC-----CCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc
Q 041741 172 KHAVPVFEEMSE-----PNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDS 221 (748)
Q Consensus 172 ~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 221 (748)
+.|.+.++.... -+...+++++..+.+...++.|......+......+|.
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence 888888776543 45567888899999999999999998888874444444
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.8e-14 Score=133.48 Aligned_cols=209 Identities=20% Similarity=0.232 Sum_probs=148.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccC--cHHH-hHHHHHHHHHCCCCcHhHHHHHH
Q 041741 86 VSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLD--VEHG-RRCHGLVIKIGLDKNIYVANALL 162 (748)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~a-~~~~~~~~~~~~~~~~~~~~~li 162 (748)
++-|.|+. +...|....+--+|+.|...|+..+...-..+++..+-.+. ..-+ .+.|-.|.+.|-.. ..+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW---- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc----
Confidence 45566665 34567888888899999999988888777777665543332 2211 22333444444222 2222
Q ss_pred HHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCCcch
Q 041741 163 SLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVESDV 242 (748)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 242 (748)
+.|...+ ++-+....+..+|.++|.++|+--..++|.++|++-.....+.+..+|+.+|.+.+-.-
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~------- 256 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV------- 256 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc-------
Confidence 2333333 44444455778999999999999999999999999999999999999999998866542
Q ss_pred hcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHH
Q 041741 243 FAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPERSVVSWNVMIAGYGQKYQSTKA 322 (748)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 322 (748)
.+++...|....+.||..++|+++....+.|+++.|.+. |
T Consensus 257 -------------~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------a 296 (625)
T KOG4422|consen 257 -------------GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------A 296 (625)
T ss_pred -------------cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------H
Confidence 688999999999999999999999999999999887765 4
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 041741 323 IELLQRMKSCGFEPDEVTSINMLVACVRSGDI 354 (748)
Q Consensus 323 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 354 (748)
.+++.+|++-|+.|.-.+|..+|..+++.++.
T Consensus 297 lqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 297 LQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred HHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 55556666666666666666666655555554
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=8.7e-14 Score=149.62 Aligned_cols=430 Identities=10% Similarity=0.063 Sum_probs=308.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCCcchhcccccccccccchhHHHHHHHHhcCCCch
Q 041741 193 MSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADL 272 (748)
Q Consensus 193 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (748)
+....+.|+++.|++.|++..+. .|+.
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~-----------------------------------------------------~P~~ 67 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA-----------------------------------------------------GPLQ 67 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh-----------------------------------------------------Cccc
Confidence 34457899999999999998764 2222
Q ss_pred --HHHHHHHHHHHhcCChhHHHHHhccCCCCCccc-HHHH--HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 041741 273 --HLSNSLLDMYAKNGDMDSAEVIFSNLPERSVVS-WNVM--IAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVA 347 (748)
Q Consensus 273 --~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~l--~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 347 (748)
.++ .++..+...|+.++|+..++....|+... +..+ ...+...|++++|+++|+++.+.... +...+..++..
T Consensus 68 ~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~ 145 (822)
T PRK14574 68 SGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMT 145 (822)
T ss_pred hhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 223 67777888899999999999988765443 4444 45778889999999999999987533 35566677788
Q ss_pred HHhcCCHHHHHHHhccCCC--CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHH
Q 041741 348 CVRSGDIKTGREMFDSMPS--PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQ 425 (748)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 425 (748)
+...++.++|++.++.+.+ |+...+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|.+
T Consensus 146 y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 146 QADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred HhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 8999999999999999987 444444333344444566666999999999872 3356667888888899998888887
Q ss_pred HHHHHHhhcCCchhH-----HHHHHHHHH---H--hcCC---hHHHHHHHhhCCC---CCcc---hH----HHHHHHHHh
Q 041741 426 VHAASLKTASHIDNY-----VASGLIGIY---S--KCQR---NELAERVFHRIPE---LDIV---CW----NSMIAGLSL 482 (748)
Q Consensus 426 ~~~~~~~~~~~~~~~-----~~~~l~~~~---~--~~~~---~~~a~~~~~~~~~---~~~~---~~----~~li~~~~~ 482 (748)
+...-...-...+.. .....++.- . ...+ .+.|+.-++.+.. .++. .| --.+-++..
T Consensus 225 l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 225 LAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred HHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence 765422111111100 001111100 0 1111 2334444444332 2221 11 234557788
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhC-----CCCchHHHHHHHHHHHhcCCHH
Q 041741 483 NSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDG-----YVNDIFVGSALIEMYCKCGDIY 557 (748)
Q Consensus 483 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~ 557 (748)
.++..++++.|+.+...+.+....+-..+..+|...+.+++|..++..+.... .+++......|..+|...++++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~ 384 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLD 384 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHH
Confidence 99999999999999999877666688899999999999999999999997753 2334444678999999999999
Q ss_pred HHHHHhhhcCC--C---------------CH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 041741 558 GARQFFDMMHG--K---------------NT-VTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHS 619 (748)
Q Consensus 558 ~A~~~~~~~~~--~---------------~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 619 (748)
+|..+++.+.+ | |- ..+..++..+...|+..+|.+.++++.... +-|......+...+...
T Consensus 385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 99999998864 2 11 134456778899999999999999998863 66777888999999999
Q ss_pred CChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHH
Q 041741 620 GLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVLLS 682 (748)
Q Consensus 620 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~ 682 (748)
|.+..|...++... ...|+ .......+.++...|++.+|..+.+.+. ..|+......+-.
T Consensus 464 g~p~~A~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r 525 (822)
T PRK14574 464 DLPRKAEQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDR 525 (822)
T ss_pred CCHHHHHHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 99999999997764 44565 5566688889999999999999998875 4454444333333
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=4.2e-14 Score=131.17 Aligned_cols=443 Identities=13% Similarity=0.085 Sum_probs=294.4
Q ss_pred eehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCCcchhcccccccccccchhHHHHHHHH
Q 041741 186 EVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQVHCLTIK 265 (748)
Q Consensus 186 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (748)
+.+-|.|+. +...|.+..+.-+|+.|.+.|+..+...-..++...+-.+..... +. ..+-+-.+.+
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~--~~-----------E~~~Fv~~~~ 181 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVP--FA-----------EWEEFVGMRN 181 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCc--ch-----------hHHHHhhccc
Confidence 445566555 356788999999999999999988888777777665444221111 00 1111111112
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 041741 266 LGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPERSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINML 345 (748)
Q Consensus 266 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 345 (748)
.|-. +..+| +.|.. |. ++-+...++..+|..||.++++--..+.|.+++++......+.+..+|+.+|
T Consensus 182 ~~E~-S~~sW--------K~G~v--Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI 249 (625)
T KOG4422|consen 182 FGED-STSSW--------KSGAV--AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLI 249 (625)
T ss_pred cccc-ccccc--------ccccH--HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhh
Confidence 2211 11111 22322 22 5555566777899999999999999999999999999998999999999999
Q ss_pred HHHHhcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHH----HHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChH
Q 041741 346 VACVRSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKE----AIKLFREMQFRGVKPDRTTLAIILSSCAAMGILE 421 (748)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 421 (748)
.+-.-..+-+-.-++...-..||..+||+++.+..+.|+++. |++++.+|++-|+.|...+|..++..+.+.++..
T Consensus 250 ~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 250 GASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred hHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 976665554444444444446999999999999999998765 5678899999999999999999999999888876
Q ss_pred HHH-HHHHHHH----hhcCC----chhHHHHHHHHHHHhcCChHHHHHHHhhCCCC--------C---cchHHHHHHHHH
Q 041741 422 SGK-QVHAASL----KTASH----IDNYVASGLIGIYSKCQRNELAERVFHRIPEL--------D---IVCWNSMIAGLS 481 (748)
Q Consensus 422 ~a~-~~~~~~~----~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---~~~~~~li~~~~ 481 (748)
+.. .++..+. ...+. .+...+...+..|....+.+.|.++..-.... + ..-|..+....+
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic 409 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC 409 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH
Confidence 543 3333332 22222 25567777888888999988888876554421 1 123556777778
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 041741 482 LNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQ 561 (748)
Q Consensus 482 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 561 (748)
.....+..+..|+.|.-.-.-|+..+...++++....+.++-..+++..+...|......+...+...+++..
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------- 482 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------- 482 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC-------
Confidence 8888899999999999888889999999999999999999999999999888775444333333333333221
Q ss_pred HhhhcCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCC
Q 041741 562 FFDMMHGKNTVT---WNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGV 638 (748)
Q Consensus 562 ~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 638 (748)
..|+... +.....-++. .-.+.....-.+|.+..++|. ..+.++-.+.+.|..++|.+++..+.+...-
T Consensus 483 -----~hp~tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 483 -----LHPLTPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred -----CCCCChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 0122111 1111111110 111222233345555544444 4555556677889999999998887444333
Q ss_pred CCChhH---HHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 639 EPILDH---YTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 639 ~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
.|.... ...+++.-.+.++...|...++-+.
T Consensus 555 ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 555 IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344333 4456666677888888988888774
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=9.9e-13 Score=134.11 Aligned_cols=366 Identities=11% Similarity=-0.026 Sum_probs=212.6
Q ss_pred CcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 041741 368 SVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIG 447 (748)
Q Consensus 368 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 447 (748)
+...|.-+..++...|.+.+|+.++..+......-+...|..+.+++...|..+.|.+.++.++...+. +..+.-.|..
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Las 491 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLAS 491 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHH
Confidence 344566677777777888888888777776644444556677777777777788888777777765543 3344456677
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcc------------hHHHHHHHHHhCCCchHHHHHHHHHHHCC---------------
Q 041741 448 IYSKCQRNELAERVFHRIPELDIV------------CWNSMIAGLSLNSLDIEAFMFFKQMRQNE--------------- 500 (748)
Q Consensus 448 ~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------- 500 (748)
.+.+.|+.++|.++++.+..+|.. ........+.+.|+.++-+..-..|....
T Consensus 492 l~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~ 571 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRR 571 (895)
T ss_pred HHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 777888888888888877655522 11223345566666665444444333211
Q ss_pred -------CCCCHHHHHHHHHhhcCCCCchhHHHHHHH------HHHhCCCCch--HHHHHHHHHHHhcCCHHHHHHHhhh
Q 041741 501 -------MYPTQFSFATVLSSCAKLSSSFQGRQVHAQ------IEKDGYVNDI--FVGSALIEMYCKCGDIYGARQFFDM 565 (748)
Q Consensus 501 -------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (748)
.+-...+...++.+-.+.++.......... -...+...+. ..+.-++..+++.+++++|..+...
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~ 651 (895)
T KOG2076|consen 572 RAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFT 651 (895)
T ss_pred HhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 111222333333343333332222221111 1112222221 3455677788899999999999887
Q ss_pred cCCC-----CH----HHHHHHHHHHHHcCChhHHHHHHHHHHHc-CC--CCCH-HHHHHHHHHhcCCCChHHHHHHHHHh
Q 041741 566 MHGK-----NT----VTWNEMIHGYAQNGYGDEAVRLYKDMIAS-GV--KPDD-ITFVAILTACSHSGLVDVGVEIFNSM 632 (748)
Q Consensus 566 ~~~~-----~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~--~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~ 632 (748)
+..- +. ..-...+.+.+..+++..|...++.|... +. .|.. ..|+..++...+.++-.--..++..+
T Consensus 652 a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~ 731 (895)
T KOG2076|consen 652 ALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRL 731 (895)
T ss_pred HHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7642 22 22345567778889999999999998875 11 2222 23444444444444332222332222
Q ss_pred hhhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHH-HHHHH----------hcCCHHHHHHHHH
Q 041741 633 QLDHGVEPI--LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVL-LSSCR----------LHANVRLAKRAAE 698 (748)
Q Consensus 633 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l-~~~~~----------~~~~~~~a~~~~~ 698 (748)
. -..|+ .......+..+...+.+.-|+..+-+.- ..|+....+.. +.++. ++-..-++...++
T Consensus 732 ~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~ 808 (895)
T KOG2076|consen 732 L---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLK 808 (895)
T ss_pred h---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1 11222 2223334555667888888888765553 45553332222 22221 1223556677777
Q ss_pred HHHhcCCC--CCcchHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 699 ELFRLDPK--NSAPYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 699 ~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
+..++.-. .-.+.+.+|++|...|-..-|..+|++..+-
T Consensus 809 RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 809 RYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 77666543 4468999999999999999999999987653
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=7.3e-14 Score=130.40 Aligned_cols=422 Identities=13% Similarity=0.059 Sum_probs=276.1
Q ss_pred HHhcCChhHHHHHhccCCC--CC------cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 041741 282 YAKNGDMDSAEVIFSNLPE--RS------VVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGD 353 (748)
Q Consensus 282 ~~~~~~~~~a~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 353 (748)
+.+...+..|.+++..... |+ +...+.+...+.+.|.++.|+..|+...+. .|+..+-..++-++..-|+
T Consensus 247 ~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d 324 (840)
T KOG2003|consen 247 HFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGD 324 (840)
T ss_pred eeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCc
Confidence 4455556666666555433 11 123444445567788888888888887764 5777776677777777788
Q ss_pred HHHHHHHhccCCC----CC--------cchHHHHHHHHHccC-----------CHHHHHHHHHHHHHcCCCCCHhh-HHH
Q 041741 354 IKTGREMFDSMPS----PS--------VSSWNAMLSSYSQSE-----------NHKEAIKLFREMQFRGVKPDRTT-LAI 409 (748)
Q Consensus 354 ~~~a~~~~~~~~~----~~--------~~~~~~ll~~~~~~~-----------~~~~a~~~~~~m~~~g~~p~~~~-~~~ 409 (748)
.++..+.|.+|.. ++ ...-..|+.-..+.. +.++++-.--++..--+.|+-.. +..
T Consensus 325 ~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dw 404 (840)
T KOG2003|consen 325 AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDW 404 (840)
T ss_pred HHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHH
Confidence 8888888777653 11 111122222222111 11222222222222223333211 111
Q ss_pred HHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHH----HHH-HHHh-C
Q 041741 410 ILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNS----MIA-GLSL-N 483 (748)
Q Consensus 410 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----li~-~~~~-~ 483 (748)
.+...-.+...+.| ..+--.-...|.+.|+++.|.++++-..+.|..+-.+ |-. -|.+ .
T Consensus 405 cle~lk~s~~~~la---------------~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqgg 469 (840)
T KOG2003|consen 405 CLESLKASQHAELA---------------IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGG 469 (840)
T ss_pred HHHHHHHhhhhhhh---------------hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcc
Confidence 11111111000100 0111112235778999999999988887665543322 211 1222 3
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHh
Q 041741 484 SLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFF 563 (748)
Q Consensus 484 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 563 (748)
.++..|.+.-+...... .-+....+.-.+.....|++++|.+.+.+.....-.-....| .+.-.+.+.|++++|++.|
T Consensus 470 k~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f 547 (840)
T KOG2003|consen 470 KDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCF 547 (840)
T ss_pred cchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHH
Confidence 45566666666554321 223333333334456679999999999998876533333333 3455677889999999999
Q ss_pred hhcC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC
Q 041741 564 DMMH---GKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP 640 (748)
Q Consensus 564 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 640 (748)
-++. ..+......+...|-...+...|++++.+.... ++.|+..+..|...|-+.|+-..|+..+-.- -.-++-
T Consensus 548 ~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds--yryfp~ 624 (840)
T KOG2003|consen 548 LKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS--YRYFPC 624 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc--ccccCc
Confidence 8765 478888888999999999999999999988875 5667788999999999999999999876543 124566
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHH
Q 041741 641 ILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVLLSS-CRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIY 718 (748)
Q Consensus 641 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 718 (748)
+..+...|+..|....-+++|+.+|++.. ..|+..-|..++.+ +++.|++.+|...|+...+.-|+|...+..|.+++
T Consensus 625 nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 625 NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence 78899999999999999999999999886 88999999888776 57899999999999999999999999999999999
Q ss_pred hhcCChH
Q 041741 719 SSLGRWD 725 (748)
Q Consensus 719 ~~~g~~~ 725 (748)
-..|..+
T Consensus 705 ~dlgl~d 711 (840)
T KOG2003|consen 705 GDLGLKD 711 (840)
T ss_pred ccccchh
Confidence 8888643
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=1.9e-11 Score=119.93 Aligned_cols=596 Identities=13% Similarity=0.074 Sum_probs=363.7
Q ss_pred cCCchhhhhhhhcCCC---CchhhhhHHHHHhhcCCChhHHHHhhccCCC---CCchhHHHHHHHHHhcCChhHHHHHHH
Q 041741 36 CNNTHSAQHLFDKMPH---KDIYSWNAILSAQCKSDDLEFAYKLFDEMPE---RNVVSWNNLISALVRNGLEEKALSVYN 109 (748)
Q Consensus 36 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 109 (748)
.++..+|+.++....+ .+...|.+-.+.--..|++..|..+..+-=+ .+...|..-+ +....+.|..+.-
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 4567788888888876 4556788877777788899999888765433 3444554433 3445666777776
Q ss_pred HHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehH
Q 041741 110 KMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTF 189 (748)
Q Consensus 110 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 189 (748)
...+. -|+. -..-+.+.--..+...=.+++....+. ++.++..|... ......++|+-++.+..+--+.+.
T Consensus 340 ~Avr~--~P~S--v~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAveccp~s~ 410 (913)
T KOG0495|consen 340 NAVRF--LPTS--VRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECCPQSM 410 (913)
T ss_pred HHHHh--CCCC--hhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhccchH
Confidence 66653 2332 222333333334444445555555554 24444444443 344555667777776655211111
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCCcchhcccccccccccchhHHHHHHHHhcCC
Q 041741 190 TAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFE 269 (748)
Q Consensus 190 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (748)
-|..+|++...++.|..+++..++. ++.+.
T Consensus 411 -dLwlAlarLetYenAkkvLNkaRe~-iptd~------------------------------------------------ 440 (913)
T KOG0495|consen 411 -DLWLALARLETYENAKKVLNKAREI-IPTDR------------------------------------------------ 440 (913)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCh------------------------------------------------
Confidence 1233455566677777777776653 22222
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 041741 270 ADLHLSNSLLDMYAKNGDMDSAEVIFSNLPERSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACV 349 (748)
Q Consensus 270 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 349 (748)
.++......--..|+.+...++.+.- +..+...|+..+...|..=...|-
T Consensus 441 ---~IWitaa~LEE~ngn~~mv~kii~rg---------------------------l~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 441 ---EIWITAAKLEEANGNVDMVEKIIDRG---------------------------LSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred ---hHHHHHHHHHHhcCCHHHHHHHHHHH---------------------------HHHHhhcceeecHHHHHHHHHHHh
Confidence 22222222222333433333333221 111222333333333333333333
Q ss_pred hcCCHHHHHHHhccCC------CCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHH
Q 041741 350 RSGDIKTGREMFDSMP------SPSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESG 423 (748)
Q Consensus 350 ~~~~~~~a~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 423 (748)
..|..-.+..+..... +.--.+|..-...|.+.+.++-|..+|....+. .+-+...+......=-..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 3333333322222221 123345666666777777777777777766653 222333444444444455667777
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCC---cchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 041741 424 KQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELD---IVCWNSMIAGLSLNSLDIEAFMFFKQMRQNE 500 (748)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 500 (748)
..+++.++..-+. ....+...+..+-..|++..|..++..+.+.+ ...|-+-+..-....+++.|..+|.+....
T Consensus 570 ~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 570 EALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 7777777766543 44445555666667788888877777766433 334666666667777788888888877754
Q ss_pred CCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-CHHHHHHH
Q 041741 501 MYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--K-NTVTWNEM 577 (748)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 577 (748)
.|+...|.--+..---+++.++|.+++++..+. ++.-...|..+.+.+.+.++++.|.+.|..-.+ | .+..|-.|
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 556666655555555567788888888776664 233456777788888888888888888877654 3 45567777
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCC
Q 041741 578 IHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGH 657 (748)
Q Consensus 578 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 657 (748)
...--+.|.+-+|..++++.+-.+ +-+...|...++.=.+.|..+.|..++.+..++ ++.+...|..-|....+.++
T Consensus 726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCccc
Confidence 777777788888888888887764 455567888888888888888888887776433 34445556666777777777
Q ss_pred hHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 658 FHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 658 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
...+...+++.. .|+-++..+...+-....+++|.+.|++++..+|++..++..+-..+...|.-++-.+++...
T Consensus 803 kTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 803 KTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred chHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 777777777655 455555566666667778888888888888888888888888888888888888777777764
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.70 E-value=1.3e-13 Score=139.53 Aligned_cols=604 Identities=12% Similarity=0.052 Sum_probs=301.8
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHH
Q 041741 83 RNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALL 162 (748)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (748)
||.++|..+|.-|+..|+.+.|- +|.-|.-+..+.+...|+.++.+....++.+.++ .|.+.+|+.|.
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLL 90 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHH
Confidence 66677777777777777777766 7777766666667777777777777777766665 56667777777
Q ss_pred HHHHhcCChhh---HHHHHhcCCC-------CCeehHHHHHHHHHcCCCHHHHHH-----HHH----HHHHcC-CCCCcc
Q 041741 163 SLYAKCGWTKH---AVPVFEEMSE-------PNEVTFTAMMSGLAKTDRVVEALE-----MFR----LMIRKA-VSIDSV 222 (748)
Q Consensus 163 ~~~~~~g~~~~---a~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~-----~~~----~m~~~g-~~~~~~ 222 (748)
.+|...|+... +++.+..+.. .....|-.+.-.|+..- ...|.. +++ ...+.+ ..|...
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~-lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHS-LPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCccc-chhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 77777776544 2221111111 11111221211222111 111111 111 111111 112111
Q ss_pred c---HHHHHHHHhccCCCCCcchhcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCC
Q 041741 223 S---LSSVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLP 299 (748)
Q Consensus 223 t---~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 299 (748)
- +..++.-+. ..... .+++.......--.|++.++..+++.-..+|+.+.|..++..|.
T Consensus 170 ~~~p~~vfLrqnv---------------~~ntp---vekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNV---------------VDNTP---VEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred ccchHHHHHHHhc---------------cCCch---HHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 111122221 11222 55565555544336899999999999999999999999999998
Q ss_pred CCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCCcchHHHH
Q 041741 300 ERS----VVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPSPSVSSWNAM 375 (748)
Q Consensus 300 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 375 (748)
+.. ..-|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+...|....+... .++...+++-
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAa 303 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAA 303 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHH
Confidence 753 3345555544 788888899999999999999999999888887776653333222 1222223332
Q ss_pred HHHHHccC-----CHH-----HHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCch---hHHH
Q 041741 376 LSSYSQSE-----NHK-----EAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHID---NYVA 442 (748)
Q Consensus 376 l~~~~~~~-----~~~-----~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 442 (748)
+..-.-.| +.+ -....+.+..-.|+.....++....+. ...|.-+..+++...+.......+ ...+
T Consensus 304 vrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~ 382 (1088)
T KOG4318|consen 304 VRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAF 382 (1088)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHH
Confidence 22222223 111 122222222223444444333333322 225665666665555543322221 1222
Q ss_pred HHHHHHHHhcCChHHHHHHHh--hCCCC--CcchHHHHHHHHHhCCCchHHHHHHHHHHHCC----CC-------CCHHH
Q 041741 443 SGLIGIYSKCQRNELAERVFH--RIPEL--DIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNE----MY-------PTQFS 507 (748)
Q Consensus 443 ~~l~~~~~~~~~~~~a~~~~~--~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~-------p~~~~ 507 (748)
..++.-|.+.-+......++. +..+. ++..-..+... ...-+...++.-+..+.... .. +-...
T Consensus 383 ~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsel-l~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 383 GALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSEL-LENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHH-HHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 223333322111111111100 00000 00000000111 11111111111111111100 00 11112
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCH------HHHHHHHHHH
Q 041741 508 FATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNT------VTWNEMIHGY 581 (748)
Q Consensus 508 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~ 581 (748)
-+.++..|++.-+..++...-+.....-+ +..|..+++.+....+.+.|..+.+++..++. .-+..+.+.+
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 23344444444444444433333333222 25677888888888888888888888776543 3466677777
Q ss_pred HHcCChhHHHHHHHHHHHcCC-CCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChH
Q 041741 582 AQNGYGDEAVRLYKDMIASGV-KPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFH 659 (748)
Q Consensus 582 ~~~~~~~~a~~~~~~m~~~~~-~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 659 (748)
.+.+...++..+++++.+.-. .|+. .++-.++......|+.+.-.++++-+ ...|+.-+ ..++....+.++..
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~l-vslgl~et----gPl~~vhLrkdd~s 613 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADIL-VSLGLSET----GPLWMVHLRKDDQS 613 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHH-HHhhhhhc----ccceEEEeeccchh
Confidence 888888888888888876421 2222 34445555666667776666666655 34444332 22344455666666
Q ss_pred HHHHHHhhCC--CCCCHhHHHHHHHHHHhc--CCHHHHHHHHHHHH---------------h------cCCCC-------
Q 041741 660 EAEMLIDEMP--CKDDPVIWEVLLSSCRLH--ANVRLAKRAAEELF---------------R------LDPKN------- 707 (748)
Q Consensus 660 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~---------------~------~~p~~------- 707 (748)
.|.+..+... .+|.|.....+.....+. .+++++........ + .+|.|
T Consensus 614 ~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e 693 (1088)
T KOG4318|consen 614 AAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGE 693 (1088)
T ss_pred hhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCc
Confidence 6666554432 445554444444443311 12222221111111 0 01111
Q ss_pred -------------CcchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 708 -------------SAPYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 708 -------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
-.-...|...|.+.|+++.|..+|.++.
T Consensus 694 ~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q 734 (1088)
T KOG4318|consen 694 IVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ 734 (1088)
T ss_pred cccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc
Confidence 1114457789999999999999999865
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1.4e-14 Score=135.10 Aligned_cols=423 Identities=13% Similarity=0.078 Sum_probs=297.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHH-HHHHHHhcCCHHHHHHHhccCCC--CCc------chHHHHHHH
Q 041741 308 VMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSIN-MLVACVRSGDIKTGREMFDSMPS--PSV------SSWNAMLSS 378 (748)
Q Consensus 308 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~--~~~------~~~~~ll~~ 378 (748)
.+...|..+....+|+..++-+.....-|+...... +-..+.+...+.+|++.++.... |++ ...+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 345566777888999999999988888887765543 33467788889999988876553 222 234455567
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchh------------HHHHHHH
Q 041741 379 YSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDN------------YVASGLI 446 (748)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~l~ 446 (748)
+.+.|+++.|+..|+...+. .|+..+-..++-++...|+.++..+.+..++.....++. .+.+..+
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 78999999999999988775 688888777888888899999999999998875443322 2222211
Q ss_pred -----HHHHhcCC--hHHH----HHHHhhCCCCCcch---HH----------H--------HHHHHHhCCCchHHHHHHH
Q 041741 447 -----GIYSKCQR--NELA----ERVFHRIPELDIVC---WN----------S--------MIAGLSLNSLDIEAFMFFK 494 (748)
Q Consensus 447 -----~~~~~~~~--~~~a----~~~~~~~~~~~~~~---~~----------~--------li~~~~~~~~~~~a~~~~~ 494 (748)
.-..+.+. -+++ .++...+..|+-.. |. . -...+.+.|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 11222111 1122 22222222332210 11 0 1124778999999999998
Q ss_pred HHHHCCCCCCHHHHHH--HHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHH
Q 041741 495 QMRQNEMYPTQFSFAT--VLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTV 572 (748)
Q Consensus 495 ~m~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 572 (748)
-+.+..-+..+..-+. .+.-+...+++..|.++-+...... .-++.....-.......|++++|.+.+++....|..
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 8876643333333222 2333333456667777666555432 112222222223344579999999999999988776
Q ss_pred HHHHHH---HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHH
Q 041741 573 TWNEMI---HGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCM 648 (748)
Q Consensus 573 ~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l 648 (748)
+-..|. -.+...|+.++|++.|-++..- +..+...+..+...|....+...|++++.+.. .+.| |+..+..|
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~ilskl 598 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAILSKL 598 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHHHHH
Confidence 555444 4577889999999999887764 34566678888889999999999999988763 4444 57889999
Q ss_pred HHHHHhcCChHHHHHHH-hhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHH
Q 041741 649 IDCLGRAGHFHEAEMLI-DEMP-CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDD 726 (748)
Q Consensus 649 ~~~~~~~g~~~~A~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 726 (748)
++.|-+.|+..+|.+.+ ++.. ++.+..+...|...|....-+++|+..++++--+.|+...+....+.++.+.|++.+
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999999874 4444 666777888888888888889999999999999999888899999999999999999
Q ss_pred HHHHHHHHHhc
Q 041741 727 LRAVRELMSEN 737 (748)
Q Consensus 727 A~~~~~~~~~~ 737 (748)
|.+.|+.+.++
T Consensus 679 a~d~yk~~hrk 689 (840)
T KOG2003|consen 679 AFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHh
Confidence 99999998664
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=4.9e-16 Score=150.33 Aligned_cols=255 Identities=16% Similarity=0.122 Sum_probs=113.0
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 041741 477 IAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFA-TVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGD 555 (748)
Q Consensus 477 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 555 (748)
...+...|++++|+++++.......+|+...|. .+...+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444556677777777775544433234333333 3444555677777777777777765432 45556666666 67888
Q ss_pred HHHHHHHhhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 041741 556 IYGARQFFDMMHG--KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASG-VKPDDITFVAILTACSHSGLVDVGVEIFNSM 632 (748)
Q Consensus 556 ~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 632 (748)
+++|.+++....+ +++..+..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|+..+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8998888876543 566677788888999999999999999977543 2456677888888999999999999999998
Q ss_pred hhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 041741 633 QLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA 709 (748)
Q Consensus 633 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 709 (748)
. ...|+ ......++..+...|+.+++.++++... .+.++..|..+..++...|++++|...++++...+|+|+.
T Consensus 173 l---~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 L---ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp H---HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred H---HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 5 33564 6677889999999999999888887774 3567888899999999999999999999999999999999
Q ss_pred chHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 710 PYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
++..++.++...|+.++|.++++++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999887643
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=4.2e-10 Score=110.79 Aligned_cols=386 Identities=11% Similarity=0.084 Sum_probs=230.3
Q ss_pred HHHhcCCHHHHHHHhccCCC---CCcchHHHHHHHHHccCCHHHHHHHHHH----HHHcCCCCCHhhHHHHHHHhhccCC
Q 041741 347 ACVRSGDIKTGREMFDSMPS---PSVSSWNAMLSSYSQSENHKEAIKLFRE----MQFRGVKPDRTTLAIILSSCAAMGI 419 (748)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~ 419 (748)
++.+..-++.|..++....+ .+...|-+-...--++|+.+.+.+++++ +...|+..+...+..=...|-..|.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 34444445555555444332 3444444444444455666666655543 3445666666666666666666677
Q ss_pred hHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCCchHHHHHHH
Q 041741 420 LESGKQVHAASLKTASHID--NYVASGLIGIYSKCQRNELAERVFHRIPEL---DIVCWNSMIAGLSLNSLDIEAFMFFK 494 (748)
Q Consensus 420 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~ 494 (748)
.-.+..+....+..|+.-. ..++..-...|.+.+.++-|..+|....+- +...|......--..|..+....+|+
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 7777777777666666542 244555666666777777776666665542 33345555544455666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCHH
Q 041741 495 QMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--KNTV 572 (748)
Q Consensus 495 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 572 (748)
+....- +-....+.......-..|+...|..++....+... .+..+|-.-+..-.....++.|+.+|.+... +...
T Consensus 575 kav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~sgTeR 652 (913)
T KOG0495|consen 575 KAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSISGTER 652 (913)
T ss_pred HHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch
Confidence 666541 22233333444445555677777776666666542 2556666666666666677777777766543 4555
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHH
Q 041741 573 TWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDC 651 (748)
Q Consensus 573 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 651 (748)
.|..-+....-.++.++|++++++.++. .|+- ..|..+.+.+.+.++++.|.+.|..=. ...+-.+..|..+++.
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~--k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGT--KKCPNSIPLWLLLAKL 728 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc--ccCCCCchHHHHHHHH
Confidence 5555555555566666777777666663 3444 356666666666666666666655432 1222224455566666
Q ss_pred HHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------------------
Q 041741 652 LGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP------------------------ 705 (748)
Q Consensus 652 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------------------------ 705 (748)
=.+.|..-.|..++++.. .+.+...|...+..-.+.|+.+.|....-++++.-|
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence 666666666766666653 333556666666666666666666666666665433
Q ss_pred ------CCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 706 ------KNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 706 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
+||..+...+.+++...++++|++.|++..+.+
T Consensus 809 ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 809 ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 366778889999999999999999999864433
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=2.1e-12 Score=130.76 Aligned_cols=275 Identities=12% Similarity=0.053 Sum_probs=192.4
Q ss_pred cCChHHHHHHHhhCCCC--Ccch-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH--HHHHhhcCCCCchhHHH
Q 041741 452 CQRNELAERVFHRIPEL--DIVC-WNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFA--TVLSSCAKLSSSFQGRQ 526 (748)
Q Consensus 452 ~~~~~~a~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 526 (748)
.|+++.|.+.+....+. ++.. +........+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666554432 1222 222233446778888888888887754 44443222 33556677788888888
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHH--------HHHHHHHHHHHcCChhHHHHHHH
Q 041741 527 VHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGK---NTV--------TWNEMIHGYAQNGYGDEAVRLYK 595 (748)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--------~~~~l~~~~~~~~~~~~a~~~~~ 595 (748)
.++.+.+.. +-++.....+...|.+.|++++|.+++..+.+. +.. .|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888877765 446677778888888888888888888777642 111 23333443444455566667777
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCC
Q 041741 596 DMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDD 673 (748)
Q Consensus 596 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 673 (748)
.+-+. .+.+......+..++...|+.++|...+++.. ...|+.... ++......++.+++.+.+++.. .+.+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l---~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGL---KRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 35566778888899999999999999998874 235555333 2333345689999999988875 4456
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 674 PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 674 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
+.....+...+...+++++|.+.++++++.+| +...+..++.++.+.|+.++|.++|++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77788888999999999999999999999999 456677899999999999999999997644
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.4e-11 Score=115.28 Aligned_cols=213 Identities=14% Similarity=0.128 Sum_probs=166.3
Q ss_pred cCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHH
Q 041741 516 AKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVR 592 (748)
Q Consensus 516 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 592 (748)
.-.|+.-.+.+-|+...+....++. .|--+..+|....+.++-+..|+...+ .|+.+|..-.+.+.-.++++.|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3457777888888888777544332 244556678888888888888887663 467788888888888889999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-C
Q 041741 593 LYKDMIASGVKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-C 670 (748)
Q Consensus 593 ~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 670 (748)
=|++.+.. .|+. ..|..+..+..+.++++++...|+...+++ +--+..|+..++++...+++++|.+.|+... .
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999884 4544 567777777788899999999999986444 3335667889999999999999999998764 2
Q ss_pred CCC---------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 671 KDD---------PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 671 ~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
.|+ |.+-. -+..++..+|+..|..++.++++++|+...++..|+.+-.+.|+.++|+++|++.
T Consensus 492 E~~~~~~~v~~~plV~K-a~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHK-ALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred ccccccccccchhhhhh-hHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 332 33322 3333445689999999999999999999999999999999999999999999964
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=8.5e-13 Score=130.35 Aligned_cols=277 Identities=16% Similarity=0.034 Sum_probs=217.6
Q ss_pred ChHHHHHHHhhCCC--CCc-chHHHHHHHHHhCCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHhhcCCCCchhHHHHH
Q 041741 454 RNELAERVFHRIPE--LDI-VCWNSMIAGLSLNSLDIEAFMFFKQMRQNE--MYPTQFSFATVLSSCAKLSSSFQGRQVH 528 (748)
Q Consensus 454 ~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 528 (748)
..++|...|..+++ +++ .....+..+|...+++++|.++|+.+++.. ..-+...|.+.++.+-+. -+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45677777777553 233 334556778888888999999998888753 122566787777665331 222233
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 041741 529 AQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--K-NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPD 605 (748)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 605 (748)
.+-.-..-+.++.+|.++..+|.-+++.+.|.+.|++..+ | ...+|..+..-+.....+|.|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 2222223356789999999999999999999999998875 3 667888888889999999999999999886 4454
Q ss_pred H-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHH
Q 041741 606 D-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLL 681 (748)
Q Consensus 606 ~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 681 (748)
. ..|..+...|.++++++.|.-.|+++. .+.|. ....-.++..+.+.|+.++|+.+++++. .+.++.....-+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 4 577888999999999999999999885 67776 4455678889999999999999999985 344666666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 682 SSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 682 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
..+...+++++|...++++.++-|++..++..++.+|.+.|+.+.|+..+--|..-.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 7788889999999999999999999999999999999999999999999887665333
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=8.5e-11 Score=110.93 Aligned_cols=315 Identities=11% Similarity=0.067 Sum_probs=227.4
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCc-chHHHHHHHHHhCCCchHHHH
Q 041741 413 SCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDI-VCWNSMIAGLSLNSLDIEAFM 491 (748)
Q Consensus 413 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~ 491 (748)
.....|..+.|...+...+..-+ ..|.+-+....-..+.+.+..+....++.+. ..---+..++....+.+++..
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~P----~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRYP----WFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcCC----cchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666555543221 2222222222223333333333323322111 111123345555667788888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCC--CchHHHHHHHHHHHhcCCHHHHHHHhhhcCCC
Q 041741 492 FFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYV--NDIFVGSALIEMYCKCGDIYGARQFFDMMHGK 569 (748)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (748)
-.......|++-+...-+....+.-...|+++|+.+|+++.+..+- -|..+|+.++-.-..+.++.--....-.+.+-
T Consensus 249 k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKy 328 (559)
T KOG1155|consen 249 KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKY 328 (559)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccC
Confidence 8888888887777666666666777889999999999999988321 26778877765544444444333333444455
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHH
Q 041741 570 NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTC 647 (748)
Q Consensus 570 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~ 647 (748)
-+.|..++.+-|.-.++.++|+..|++.++. .|.. ..|+.+..-|...++...|++.++.++ .+.| |-..|-.
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAWYG 403 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAWYG 403 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHHhh
Confidence 5667778888888899999999999999995 4554 578889999999999999999999885 4444 5677889
Q ss_pred HHHHHHhcCChHHHHHHHhhCC-CC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChH
Q 041741 648 MIDCLGRAGHFHEAEMLIDEMP-CK-DDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWD 725 (748)
Q Consensus 648 l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 725 (748)
++.+|.-.+.+.=|+-+|++.. .+ .|+..|.+|+..|.+.++.++|+..+++++.....+..++..||++|.+.++.+
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999985 44 489999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHh
Q 041741 726 DLRAVRELMSE 736 (748)
Q Consensus 726 ~A~~~~~~~~~ 736 (748)
+|..+|++-.+
T Consensus 484 eAa~~yek~v~ 494 (559)
T KOG1155|consen 484 EAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHH
Confidence 99999987544
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=7.6e-11 Score=111.24 Aligned_cols=246 Identities=14% Similarity=0.103 Sum_probs=175.4
Q ss_pred HHhCCCchHHHHHHHHHHHCCCC--CCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHH
Q 041741 480 LSLNSLDIEAFMFFKQMRQNEMY--PTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIY 557 (748)
Q Consensus 480 ~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 557 (748)
.-...++++|+.+|+++.+...- .|..+|..++-.-.... ...++.+-.-.--+.-+.++..+..-|+-.++.+
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 34456667777777777665211 14456655554322211 1122222221111334556667777788888888
Q ss_pred HHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhh
Q 041741 558 GARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQL 634 (748)
Q Consensus 558 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 634 (748)
+|...|+...+ .....|..+++-|...++...|++-++++++-+ +-|-..|-.|.++|...+...-|+-+|++..
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~- 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL- 425 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH-
Confidence 99998888765 345678888888999888999999999988853 5566788899999988888888999988874
Q ss_pred hhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cC
Q 041741 635 DHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFR-------LD 704 (748)
Q Consensus 635 ~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~ 704 (748)
.++|+ ...|.+|+++|.+.++.++|.+-|++.. ...+...+..++..+...++.++|...+++-++ ..
T Consensus 426 --~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~ 503 (559)
T KOG1155|consen 426 --ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID 503 (559)
T ss_pred --hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence 55564 6778889999999999999999888875 333457788888888888899999999888888 34
Q ss_pred CCCCcchHHHhHHHhhcCChHHHHHHHHH
Q 041741 705 PKNSAPYSLLANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 705 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (748)
|+...+...|+.-+.+.+++++|..+...
T Consensus 504 ~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 504 DETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 55556677788888888888888775543
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=7.4e-13 Score=130.77 Aligned_cols=249 Identities=16% Similarity=0.126 Sum_probs=197.2
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCC--CCchHHHHHHHHHHHhcCCHHHHHHH
Q 041741 485 LDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGY--VNDIFVGSALIEMYCKCGDIYGARQF 562 (748)
Q Consensus 485 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 562 (748)
+..+|+..|..+... +.-+......+..+|...++++++..+|+.+.+... .-+..+|...+--+-+.=.+.--.+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 457889999884443 344456777889999999999999999999988732 22677777665433222222222222
Q ss_pred hhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC
Q 041741 563 FDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKP-DDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI 641 (748)
Q Consensus 563 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 641 (748)
+-...+..+.+|.++.++|.-+++++.|++.|++..+ +.| ...+|+.+..-+.....+|+|...|+... ++.|+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCch
Confidence 2233345789999999999999999999999999999 467 56788888888889999999999999774 44554
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHH
Q 041741 642 -LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDD-PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIY 718 (748)
Q Consensus 642 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 718 (748)
-..|-.++-.|.+.++++.|.-.|+++. +.|. .+....++..+.+.|+.++|++.++++.-++|.|+..-+..+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 3345567889999999999999999986 6664 556666777789999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhcCC
Q 041741 719 SSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~~ 739 (748)
...+++++|+..++++++--+
T Consensus 568 ~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HhhcchHHHHHHHHHHHHhCc
Confidence 999999999999999887433
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.7e-09 Score=102.57 Aligned_cols=455 Identities=10% Similarity=0.069 Sum_probs=328.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 041741 272 LHLSNSLLDMYAKNGDMDSAEVIFSNLPE---RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVAC 348 (748)
Q Consensus 272 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 348 (748)
...+-...+.-...+++..|..+|+.... +++..|-..+..-.++..+..|..++++....=...|.. +-..+..=
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymE 151 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHH
Confidence 33444444444556778889999988776 456678888888889999999999999988753333332 33334444
Q ss_pred HhcCCHHHHHHHhccCC--CCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHH
Q 041741 349 VRSGDIKTGREMFDSMP--SPSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQV 426 (748)
Q Consensus 349 ~~~~~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 426 (748)
-..|++..|.++|+.-. +|+...|.+.+..-.+.+.++.|..+++...-. .|+..++....+-=.+.|+...+..+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 56799999999998766 499999999999999999999999999998864 69999998888888889999999999
Q ss_pred HHHHHhhcCC--chhHHHHHHHHHHHhcCChHHHHHHHhhCCCC--C---cchHHHHHHHHHhCCCc---hHHHH-----
Q 041741 427 HAASLKTASH--IDNYVASGLIGIYSKCQRNELAERVFHRIPEL--D---IVCWNSMIAGLSLNSLD---IEAFM----- 491 (748)
Q Consensus 427 ~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~---~~~~~~li~~~~~~~~~---~~a~~----- 491 (748)
++.+++.-.. ....++.+...-=..++.++.|.-+|+-..+. . ...|..+...=-+-|+. ++++-
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 9988774322 13344555555555677888888887655531 1 12233333333334443 33332
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCch-HHHHHHHHH--------HHhcCCHHHHHHH
Q 041741 492 FFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDI-FVGSALIEM--------YCKCGDIYGARQF 562 (748)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~--------~~~~g~~~~A~~~ 562 (748)
-+..+.+.+ +-|-.++--.+..-...|+.+...++++.....-.+.+. ..|...|.. -....+++.+.++
T Consensus 310 qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 233444442 456677777777777889999999999998876433221 122222211 1246789999999
Q ss_pred hhhcCC--C-C----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhh
Q 041741 563 FDMMHG--K-N----TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLD 635 (748)
Q Consensus 563 ~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 635 (748)
++.+.+ | . ...|-....-..++.+...|.+++-..+. .-|...+|...|..=.+.+.++.+..++++..
T Consensus 389 yq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfl-- 464 (677)
T KOG1915|consen 389 YQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFL-- 464 (677)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH--
Confidence 987764 2 2 23455555566778899999999998876 46888889988888889999999999999985
Q ss_pred hCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 041741 636 HGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDD----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAP 710 (748)
Q Consensus 636 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 710 (748)
...|. ..+|...+..=...|+.+.|..+|+-....|. ...|...+..-...|.+++|..+|+++++..+.- ..
T Consensus 465 -e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kv 542 (677)
T KOG1915|consen 465 -EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KV 542 (677)
T ss_pred -hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hH
Confidence 44554 67788888888899999999999998876663 4677888888888999999999999999998844 46
Q ss_pred hHHHhHHHh-----hcC-----------ChHHHHHHHHHHHh
Q 041741 711 YSLLANIYS-----SLG-----------RWDDLRAVRELMSE 736 (748)
Q Consensus 711 ~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 736 (748)
+.+.+..-. +.| ....|+.+|+++..
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 666666554 444 55678888877644
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=2.9e-11 Score=123.35 Aligned_cols=280 Identities=12% Similarity=0.012 Sum_probs=154.9
Q ss_pred cCChHHHHHHHhhCCCC--Ccc-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHH
Q 041741 452 CQRNELAERVFHRIPEL--DIV-CWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVH 528 (748)
Q Consensus 452 ~~~~~~a~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 528 (748)
.|+++.|.+.+.+..+. ++. .+-....++...|+++.|.+.+.+..+....+...........+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555555555444332 111 122223444555666666666666554321111112222344555566666666666
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHH----HHHHHHHHcCChhHHHHHHHHHHHcC
Q 041741 529 AQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWN----EMIHGYAQNGYGDEAVRLYKDMIASG 601 (748)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~l~~~~~~~~~~~~a~~~~~~m~~~~ 601 (748)
+.+.+.. |-++.+...+...+...|++++|.+.+..+.+ .+...+. .........+..+.+.+.+..+.+..
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 6666554 33445556666666666666666666665553 1222221 11111122222333334444444431
Q ss_pred C---CCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhH---HHHHHHHHHhcCChHHHHHHHhhCC--CCCC
Q 041741 602 V---KPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDH---YTCMIDCLGRAGHFHEAEMLIDEMP--CKDD 673 (748)
Q Consensus 602 ~---~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 673 (748)
. +.+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+.+.+.+++.. .+.+
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 1 125566666777777777777777777776422 333221 1111112233466677777776653 3334
Q ss_pred H--hHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 674 P--VIWEVLLSSCRLHANVRLAKRAAE--ELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 674 ~--~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
+ .....++..+.+.|++++|.+.++ .+.+..| ++..+..++.++.+.|+.++|.++|++...
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 677788888888888888888888 5666778 445577888888888888888888887543
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=4.3e-11 Score=121.30 Aligned_cols=152 Identities=11% Similarity=0.056 Sum_probs=114.9
Q ss_pred HHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChH
Q 041741 547 IEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVD 623 (748)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 623 (748)
+.......+.+...++++.+.+ .++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~ 311 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPE 311 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChH
Confidence 3333344556666677776653 47778888889999999999999999998884 5555322 233444568899
Q ss_pred HHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041741 624 VGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFR 702 (748)
Q Consensus 624 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 702 (748)
+++...+...+.+ +-|...+..++..+.+.|++++|.+.|+.+. ..|+...+..+...+...|+.++|.+++++.+.
T Consensus 312 ~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 312 QLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999988885332 3335567788999999999999999998886 678888888888889999999999999999887
Q ss_pred cC
Q 041741 703 LD 704 (748)
Q Consensus 703 ~~ 704 (748)
+-
T Consensus 390 ~~ 391 (398)
T PRK10747 390 LT 391 (398)
T ss_pred hh
Confidence 54
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=1.6e-10 Score=117.84 Aligned_cols=288 Identities=10% Similarity=-0.020 Sum_probs=179.4
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHhhH-HHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHH
Q 041741 380 SQSENHKEAIKLFREMQFRGVKPDRTTL-AIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELA 458 (748)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 458 (748)
...|+++.|.+.+....+. .|++..+ .....+....|+.+.+...+..+.+....+...+.....
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a------------ 160 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART------------ 160 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH------------
Confidence 4578888888888776654 4544333 223355556677777777766665543322222222223
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCC
Q 041741 459 ERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVN 538 (748)
Q Consensus 459 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 538 (748)
..+...|+++.|...++.+.+.. +-+......+...+...|+++.+.+.+..+.+.+..+
T Consensus 161 -------------------~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 161 -------------------RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred -------------------HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555442 2233444555555555666666666666555554332
Q ss_pred chHHHH-------HHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 041741 539 DIFVGS-------ALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDIT 608 (748)
Q Consensus 539 ~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 608 (748)
+..... .++..-......+...+.++...+ .++..+..++..+...|++++|.+++++..+. .||...
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~ 298 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRA 298 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCccc
Confidence 221111 111111122233445555555543 47888888999999999999999999999986 344432
Q ss_pred --H-HHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh--C-CCCCCHhHHHHHHH
Q 041741 609 --F-VAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDE--M-PCKDDPVIWEVLLS 682 (748)
Q Consensus 609 --~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~l~~ 682 (748)
+ ..........++.+.+...+++..+.....|+......++..+.+.|++++|.+.|+. . ...|++..+..+..
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 1 1112222445778888888888754433333325677899999999999999999994 3 36788888889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 041741 683 SCRLHANVRLAKRAAEELFRL 703 (748)
Q Consensus 683 ~~~~~~~~~~a~~~~~~~~~~ 703 (748)
.+...|+.++|.+++++++..
T Consensus 379 ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998663
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=2.3e-13 Score=131.66 Aligned_cols=227 Identities=15% Similarity=0.123 Sum_probs=104.8
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHHHHHHHHHHHHHcC
Q 041741 510 TVLSSCAKLSSSFQGRQVHAQIEKDG-YVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGK---NTVTWNEMIHGYAQNG 585 (748)
Q Consensus 510 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 585 (748)
.+...+...|++++|.+++....... .+.++..|..+.......++++.|.+.++.+... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 45777889999999999996655444 3456677777778888899999999999998753 44566667776 7899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 041741 586 YGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLI 665 (748)
Q Consensus 586 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 665 (748)
++++|.+++++..+. .++...+..++..+...++++++..+++.+......+++...|..++..+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999888765 466677788888899999999999999998544445667888889999999999999999999
Q ss_pred hhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 666 DEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 666 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
++.. .+.++.....++..+...|+.+++.++++...+..|.|+..+..++.+|...|+.++|+.++++..+..+
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9986 4446888999999999999999999999999999899999999999999999999999999999876444
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=6.1e-09 Score=98.86 Aligned_cols=231 Identities=13% Similarity=0.081 Sum_probs=152.6
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH-------HHHH---HHHhhcCCCCchhHHHHHHHHHHhCCCCc
Q 041741 470 IVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQF-------SFAT---VLSSCAKLSSSFQGRQVHAQIEKDGYVND 539 (748)
Q Consensus 470 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 539 (748)
-.+|--.++.-...|+.+...++|...+.. ++|-.. .|.- .+-.-....|.+.+.+++....+. +|..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 345555566666678888888888877755 344221 1111 111223567788888888887772 3334
Q ss_pred hHHHHHHH----HHHHhcCCHHHHHHHhhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041741 540 IFVGSALI----EMYCKCGDIYGARQFFDMMHG--KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAIL 613 (748)
Q Consensus 540 ~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 613 (748)
..++.-+- +.-.++.++..|.+++..... |-..++...|..-.+.++++.+..++++.++-+ +-|..+|....
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kya 478 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYA 478 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHH
Confidence 44444433 333467888889998887664 777788888888888888999999999988853 34446777777
Q ss_pred HHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHHHH-----hc
Q 041741 614 TACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVLLSSCR-----LH 687 (748)
Q Consensus 614 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~-----~~ 687 (748)
..=...|+.+.|..+|+-+.....+....-.+...++.=...|.++.|..+++++. ..+-..+|-.....-. ..
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~ 558 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQE 558 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccccc
Confidence 77677889999999988775443333334456666666678889999999988885 3344446665554422 22
Q ss_pred C-----------CHHHHHHHHHHHHhc
Q 041741 688 A-----------NVRLAKRAAEELFRL 703 (748)
Q Consensus 688 ~-----------~~~~a~~~~~~~~~~ 703 (748)
+ ....|..+++++...
T Consensus 559 ~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 559 DEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred ccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 3 456778888887764
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=2.9e-11 Score=114.69 Aligned_cols=198 Identities=15% Similarity=0.081 Sum_probs=166.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041741 539 DIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTA 615 (748)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 615 (748)
....+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677788899999999999999987653 356778888999999999999999999999864 4455678888889
Q ss_pred hcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHH
Q 041741 616 CSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLA 693 (748)
Q Consensus 616 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 693 (748)
+...|++++|...+++.............+..++.++...|++++|...+++.. .+.++..+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999985432223335567788999999999999999998875 334567788888889999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 694 KRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 694 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
...++++++..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998988889999999999999999999998887553
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=8.5e-08 Score=94.87 Aligned_cols=551 Identities=14% Similarity=0.131 Sum_probs=267.2
Q ss_pred hHHHHHHHhccccCcHHHhHHHHHHHHH-CCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCC
Q 041741 122 TLASVFKASTALLDVEHGRRCHGLVIKI-GLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTD 200 (748)
Q Consensus 122 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 200 (748)
.|...+..+...|+.......|+..... .+.--..+|...+......|-.+.+.+++++..+.++..-+-.|..++..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 4444455555566666666666555433 222223456667776777777778888888777766666777788888888
Q ss_pred CHHHHHHHHHHHHHcC------CCCCcccHHHHHHHHhccCCCCCcchhcccccccccccchhHHHHHHHHhcCCCch--
Q 041741 201 RVVEALEMFRLMIRKA------VSIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADL-- 272 (748)
Q Consensus 201 ~~~~a~~~~~~m~~~g------~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 272 (748)
++++|-+.+...+... .+-+...|.-+....++. .+.........+...+.. .-+|.
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~-------------p~~~~slnvdaiiR~gi~--rftDq~g 248 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN-------------PDKVQSLNVDAIIRGGIR--RFTDQLG 248 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC-------------cchhcccCHHHHHHhhcc--cCcHHHH
Confidence 8888888877765432 122223333343333333 111111112222222211 12332
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhccCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCChhhHHHHHHHHH
Q 041741 273 HLSNSLLDMYAKNGDMDSAEVIFSNLPER--SVVSWNVMIAGYGQKYQSTKAIELLQRMKSC-GFEPDEVTSINMLVACV 349 (748)
Q Consensus 273 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~ 349 (748)
..+.+|.+-|.+.|.++.|.+++++..+. ++.-|..+..+|++.....-+..+ +...+. |-.-+..
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed~~---------- 317 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEEDDV---------- 317 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhhhh----------
Confidence 35677788888888888888877765542 233455555555432211111110 000000 1000111
Q ss_pred hcCCHHHHHHHhccCCC---------------CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC------HhhHH
Q 041741 350 RSGDIKTGREMFDSMPS---------------PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPD------RTTLA 408 (748)
Q Consensus 350 ~~~~~~~a~~~~~~~~~---------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~ 408 (748)
+++-....|+.+.. .++..|.. +.-+..|+..+....+.+..+. +.|. ...+.
T Consensus 318 ---dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~ 391 (835)
T KOG2047|consen 318 ---DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWV 391 (835)
T ss_pred ---hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHH
Confidence 11222222222221 12222222 2223455666666666666553 2332 12234
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHhcCChHHHHHHHhhCCC-CCcchHHHHHHHHHhCC
Q 041741 409 IILSSCAAMGILESGKQVHAASLKTASHID---NYVASGLIGIYSKCQRNELAERVFHRIPE-LDIVCWNSMIAGLSLNS 484 (748)
Q Consensus 409 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~ 484 (748)
.+.+.|-+.|+++.|..+++...+.....- ..+|-.-..+=.+..+++.|.++.+.... |.... ..+...+
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~ 466 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----LEYYDNS 466 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----hhhhcCC
Confidence 444555555666666666655555433221 12222222333334444444444444331 11100 0111111
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhh
Q 041741 485 LDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFD 564 (748)
Q Consensus 485 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 564 (748)
.+-++ .+ .-+...|...+..-...|-++....+++.+....+.. +.+.......+-.+.-++++.++++
T Consensus 467 ~pvQ~-rl---------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 467 EPVQA-RL---------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred CcHHH-HH---------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11000 00 0122234444444455667778888888888776433 3322233344455667888888888
Q ss_pred hcCC----CCH-HHHHHHHHHHHHc---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh--cCCCChHHHHHHHHHhhh
Q 041741 565 MMHG----KNT-VTWNEMIHGYAQN---GYGDEAVRLYKDMIASGVKPDDITFVAILTAC--SHSGLVDVGVEIFNSMQL 634 (748)
Q Consensus 565 ~~~~----~~~-~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~ 634 (748)
+-.. |++ ..|+..+.-+.++ ...+.|..+|++.++ |++|...-+..|+-+- ..-|....|++++++..
T Consensus 536 rgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat- 613 (835)
T KOG2047|consen 536 RGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT- 613 (835)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-
Confidence 7653 444 3577666655542 357889999999988 6777664333332221 34477778888888763
Q ss_pred hhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhH---HHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC-
Q 041741 635 DHGVEPI--LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVI---WEVLLSSCRLHANVRLAKRAAEELFRL-DPK- 706 (748)
Q Consensus 635 ~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~- 706 (748)
.++++. ...|+..+.--...=-...-..+|++.. .-|+... -......-...|..++|..+|.-.-++ +|.
T Consensus 614 -~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~ 692 (835)
T KOG2047|consen 614 -SAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRV 692 (835)
T ss_pred -hcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcC
Confidence 233333 2334433321111101111222232221 1122211 122233345567777777777766664 443
Q ss_pred CCcchHHHhHHHhhcCC
Q 041741 707 NSAPYSLLANIYSSLGR 723 (748)
Q Consensus 707 ~~~~~~~l~~~~~~~g~ 723 (748)
++..+...-..-.+.|+
T Consensus 693 ~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 693 TTEFWDTWKEFEVRHGN 709 (835)
T ss_pred ChHHHHHHHHHHHhcCC
Confidence 44556666666667777
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.4e-09 Score=105.79 Aligned_cols=275 Identities=12% Similarity=-0.005 Sum_probs=136.2
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 041741 438 DNYVASGLIGIYSKCQRNELAERVFHRIPELDIV---CWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSS 514 (748)
Q Consensus 438 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 514 (748)
+..+...-.+-+....++.+..++++.+.+.|+. .+..-|.++.+.|+..+-..+=.++.+. .+....+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 4444445555566666667777666666654443 3444455666666666666555555544 12234455555555
Q ss_pred hcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHH
Q 041741 515 CAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAV 591 (748)
Q Consensus 515 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 591 (748)
|...|+.++|+.+|......... -...|-...+.|.-.|..++|...+....+ .....+--+..-|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 55555566666655554443211 122344455555555555555544443322 01111111233344555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhC-CCC----ChhHHHHHHHHHHhcCChHHHHHHHh
Q 041741 592 RLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHG-VEP----ILDHYTCMIDCLGRAGHFHEAEMLID 666 (748)
Q Consensus 592 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 666 (748)
+.|.+.... .+.|+..++-+.-.....+.+.+|..+|+....... +.+ -..++..|+.+|.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 555555553 123334444444444445555555555554421100 000 12334555555555555555555555
Q ss_pred hCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHh
Q 041741 667 EMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLA 715 (748)
Q Consensus 667 ~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 715 (748)
+.. .+.+..++..++..+...|+++.|.+.+.+++.++|+|..+-..|.
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 543 3345555555555555555555555555555555555544444433
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=2.5e-09 Score=99.70 Aligned_cols=287 Identities=10% Similarity=0.034 Sum_probs=172.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHH
Q 041741 382 SENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERV 461 (748)
Q Consensus 382 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 461 (748)
.|+|.+|.+++.+-.+.+-.|- ..|..-.++....|+.+.+-.++.++.+....++..+.-.........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4667777777666555543221 223333455555666666666666665554444444444445555555555555544
Q ss_pred HhhCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCC
Q 041741 462 FHRIPE---LDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVN 538 (748)
Q Consensus 462 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 538 (748)
+.++.+ .++........+|.+.|++.....++..|.+.|.-.++..-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 444332 2344455555666666666666666666666554333221100
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041741 539 DIFVGSALIEMYCKCGDIYGARQFFDMMH---GKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTA 615 (748)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 615 (748)
...++..+++-....+..+.-...++..+ +.++..-.+++.-+...|+.++|.++.++..+.+..|+.. ..-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence 11233344444444444444455666655 3467777777888888888889988888888887766622 2234
Q ss_pred hcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCCHHHHH
Q 041741 616 CSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVLLSSCRLHANVRLAK 694 (748)
Q Consensus 616 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 694 (748)
+.+.++.+.-++..+.-.+..+..| ..+.+|+..|.+.+.|.+|...++... ..|+...+..+...+.+.|++++|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 5666777766666666555555555 556677777888888888877777654 6677777777777777778877777
Q ss_pred HHHHHHHhc
Q 041741 695 RAAEELFRL 703 (748)
Q Consensus 695 ~~~~~~~~~ 703 (748)
++.++++..
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 777777653
No 54
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.5e-07 Score=96.09 Aligned_cols=194 Identities=12% Similarity=0.156 Sum_probs=116.6
Q ss_pred HHHHhCCCCCcchhhHHHHHHHccCCchhhhhhhhcCCC--CchhhhhHHHHHhhcCCChhHHHHhhccCCC--------
Q 041741 13 HILRNGLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMPH--KDIYSWNAILSAQCKSDDLEFAYKLFDEMPE-------- 82 (748)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------- 82 (748)
...+-|..|+-. -+|+...+ -+++.+..+...+++ +...-++.+...+...+-...+...+-...+
T Consensus 503 Y~kKvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~ 578 (1666)
T KOG0985|consen 503 YAKKVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGH 578 (1666)
T ss_pred HHHHcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhh
Confidence 345567777733 34555555 567888887777776 3333344444444444443333322211110
Q ss_pred -------------CC---------ch---hHHHHHHHHHhcCChhHHHHHHHHHHhC--CCC-CCcchHHHHHHHhcccc
Q 041741 83 -------------RN---------VV---SWNNLISALVRNGLEEKALSVYNKMSNE--GFV-PTHITLASVFKASTALL 134 (748)
Q Consensus 83 -------------~~---------~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~-p~~~~~~~ll~~~~~~~ 134 (748)
|+ .. -+..+.+.|.++|-..+|++.|..+..- -+. .+...-. -+-.+...-
T Consensus 579 LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pE-wLv~yFg~l 657 (1666)
T KOG0985|consen 579 LQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPE-WLVNYFGSL 657 (1666)
T ss_pred HHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHH-HHHHHHHhc
Confidence 21 11 2567888899999999999877766431 010 0100111 122333444
Q ss_pred CcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCC---------------CCeehHHHHHHHHHcC
Q 041741 135 DVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSE---------------PNEVTFTAMMSGLAKT 199 (748)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~li~~~~~~ 199 (748)
.++.+.+++..|...++.-+..+.-.+..-|..+=-.+...++|+.... .|+......|.+.++.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 6788889999999988887776666666666666566667777776542 4666667788889999
Q ss_pred CCHHHHHHHHHH
Q 041741 200 DRVVEALEMFRL 211 (748)
Q Consensus 200 g~~~~a~~~~~~ 211 (748)
|.+.+...+.++
T Consensus 738 ~QikEvERicre 749 (1666)
T KOG0985|consen 738 GQIKEVERICRE 749 (1666)
T ss_pred ccHHHHHHHHhc
Confidence 998888877654
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.4e-09 Score=104.11 Aligned_cols=452 Identities=12% Similarity=0.022 Sum_probs=282.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHhccCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 041741 271 DLHLSNSLLDMYAKNGDMDSAEVIFSNLPE--RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVAC 348 (748)
Q Consensus 271 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 348 (748)
+..-+..+++-+....++..|.-+-+++.. .|+...--+++++.-.|+++.|..++..-.-. ..|..+......++
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCL 92 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHH
Confidence 344555666666666666666665555432 45555556677777777777777776654332 34556666666777
Q ss_pred HhcCCHHHHHHHhccCCC-----------------CCcch----HHHHH-------HHHHccCCHHHHHHHHHHHHHcCC
Q 041741 349 VRSGDIKTGREMFDSMPS-----------------PSVSS----WNAML-------SSYSQSENHKEAIKLFREMQFRGV 400 (748)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~-----------------~~~~~----~~~ll-------~~~~~~~~~~~a~~~~~~m~~~g~ 400 (748)
.+..+++.|..++..... +|..- -+.-. ..|....+.++|...+.+....
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~-- 170 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA-- 170 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--
Confidence 788888888887773211 00000 00001 1223334445555555444322
Q ss_pred CCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCC----chhHHHHHHHHHHHhcCChHHHHHHH--hhCC--CCCcch
Q 041741 401 KPDRTTLAIILSSCAAMGILESGKQVHAASLKTASH----IDNYVASGLIGIYSKCQRNELAERVF--HRIP--ELDIVC 472 (748)
Q Consensus 401 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~--~~~~~~ 472 (748)
|..-+..+...-. ...-.+.+.++.+...... .+......+.....-...-+.....- ..+. +.++..
T Consensus 171 --D~~c~Ea~~~lvs--~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 171 --DAKCFEAFEKLVS--AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred --chhhHHHHHHHHH--HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 2222222111000 0000111111111110000 01111111111110000000000000 0000 123333
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 041741 473 WNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCK 552 (748)
Q Consensus 473 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 552 (748)
...-..-+...+++.+..+++....+.. ++....+..=|.++...|+..+-..+-..+.+. .|..+.+|-++.-.|..
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 4444556677889999999999988753 455555555566777888877766666666654 35567888889888989
Q ss_pred cCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHH
Q 041741 553 CGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIF 629 (748)
Q Consensus 553 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 629 (748)
.|+..+|++.|.+... .-...|-..+.+|.-.|..++|+..+..+-+. ++-....+-.+.--|.+.+..+.|...|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999998764 34568999999999999999999999888774 2222233445566788899999999999
Q ss_pred HHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 041741 630 NSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-----CKD----DPVIWEVLLSSCRLHANVRLAKRAAEE 699 (748)
Q Consensus 630 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 699 (748)
.+.. ++-|+ +-.+..++-.....+.+.+|..+|+... ..+ -..++..|+..+++.+.+++|+..+++
T Consensus 404 ~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 9875 66665 5566677777788999999999998763 111 245678888999999999999999999
Q ss_pred HHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 700 LFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 700 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
++.+.|+++.++..+|-+|...|+.+.|.++|.+...
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999997543
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=9.3e-08 Score=94.59 Aligned_cols=587 Identities=14% Similarity=0.116 Sum_probs=340.3
Q ss_pred chhhhHHHHHHH------HhCCCCCcchhhHHHHHHHccCCchhhhhhhhcCCCCchhhhhHHHHHhhcCCChhHHHHhh
Q 041741 4 HVAGKLLHAHIL------RNGLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMPHKDIYSWNAILSAQCKSDDLEFAYKLF 77 (748)
Q Consensus 4 ~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 77 (748)
|+..=.||-.-+ -.+..|+...|..+=+. ++.+.....+|+ ..|...+..+.+++++..-...|
T Consensus 56 lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c------~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tf 125 (835)
T KOG2047|consen 56 LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNC------FERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTF 125 (835)
T ss_pred CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHH------HHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHH
Confidence 344444555444 22556665555544332 445667777776 57888888999999999999888
Q ss_pred ccCCC-----CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHC--
Q 041741 78 DEMPE-----RNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIG-- 150 (748)
Q Consensus 78 ~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 150 (748)
++... .....|...+.-...++-++-+..+|++-++ +.| ..-.-.+..++..++.++|.+.+.......
T Consensus 126 drALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f 201 (835)
T KOG2047|consen 126 DRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEF 201 (835)
T ss_pred HHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhh
Confidence 87653 3445688888888888888889999998876 334 346677888888999999988887776542
Q ss_pred ----CCCcHhHHHHHHHHHHhcCC---hhhHHHHHhcCCC--CC--eehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 041741 151 ----LDKNIYVANALLSLYAKCGW---TKHAVPVFEEMSE--PN--EVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSI 219 (748)
Q Consensus 151 ----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 219 (748)
.+.+...|.-+-+..++.-+ --.+..+++.+.. +| ...|..|...|.+.|.+++|.++|++..+. ..
T Consensus 202 ~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~ 279 (835)
T KOG2047|consen 202 VSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VM 279 (835)
T ss_pred hhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--he
Confidence 35556667766666655432 2234445555543 33 236889999999999999999999998775 34
Q ss_pred CcccHHHHHHHHhccCCCCCcchhcccccccccccchhHHHH-HHH----HhcCCCchHHHHHHHHHHHhcCChhHHHHH
Q 041741 220 DSVSLSSVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQVHC-LTI----KLGFEADLHLSNSLLDMYAKNGDMDSAEVI 294 (748)
Q Consensus 220 ~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 294 (748)
....|..+.++|+... +.... .|. +.+-+-+. -+++-....
T Consensus 280 tvrDFt~ifd~Ya~FE---------------------E~~~~~~me~a~~~~~n~ed~-------------~dl~~~~a~ 325 (835)
T KOG2047|consen 280 TVRDFTQIFDAYAQFE---------------------ESCVAAKMELADEESGNEEDD-------------VDLELHMAR 325 (835)
T ss_pred ehhhHHHHHHHHHHHH---------------------HHHHHHHHhhhhhcccChhhh-------------hhHHHHHHH
Confidence 5556777888876651 11111 111 01111111 112222222
Q ss_pred hccCCC---------------CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------hhhHHHHHHHHHhcCC
Q 041741 295 FSNLPE---------------RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPD------EVTSINMLVACVRSGD 353 (748)
Q Consensus 295 ~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~~~ 353 (748)
|+.+.. .++..|..- .-+..|+..+-+..+.+.... +.|. ...+..+...|-..|+
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCc
Confidence 333221 122233332 334566777777777777653 2221 2346667778888999
Q ss_pred HHHHHHHhccCCCCCc-------chHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHH
Q 041741 354 IKTGREMFDSMPSPSV-------SSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQV 426 (748)
Q Consensus 354 ~~~a~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 426 (748)
++.|..+|++....+- .+|......=.+..+++.|+++++.... .|.... + .+...+.+-.+
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~pvQ~--- 471 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDNSEPVQA--- 471 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcCCCcHHH---
Confidence 9999999998876333 2344444455566778888887776543 343322 1 11111111111
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHH---HHHhCCCchHHHHHHHHHHHCCCCC
Q 041741 427 HAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIA---GLSLNSLDIEAFMFFKQMRQNEMYP 503 (748)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~p 503 (748)
.+..+..++...++.--..|-++....+++++.+.-+.+=..+++ .+-.+.-++++.++|++-+..=..|
T Consensus 472 -------rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 472 -------RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred -------HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 011133444445555555666677777777776543333222222 2233444567777776555443345
Q ss_pred CHH----HHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCHHHHHHHhhhcCCC-----CHH
Q 041741 504 TQF----SFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIF--VGSALIEMYCKCGDIYGARQFFDMMHGK-----NTV 572 (748)
Q Consensus 504 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 572 (748)
+.. ||....-.-.....++.|..+|++..+ |.+|... +|-.....=.+.|-...|.+++++.... -..
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~ 623 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLD 623 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHH
Confidence 443 232222222334567888888888877 6555321 1222222223457778888888876642 234
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH---HhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHH
Q 041741 573 TWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILT---ACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMI 649 (748)
Q Consensus 573 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 649 (748)
.||+.|.-....=-+.....+|++.++. -|+...-...++ .=.+.|..+.|..++....+-..-..+...|...=
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk 701 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWK 701 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHH
Confidence 5777666554444456677788888884 566654333333 22567888888888776532222233355666666
Q ss_pred HHHHhcCChHHHHHH
Q 041741 650 DCLGRAGHFHEAEML 664 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~ 664 (748)
..=.+.|+-+.-.++
T Consensus 702 ~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 702 EFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHhcCCHHHHHHH
Confidence 666777874443333
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=5.9e-09 Score=95.15 Aligned_cols=153 Identities=15% Similarity=0.136 Sum_probs=101.4
Q ss_pred HHHHHHHhhhcCC-----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHH
Q 041741 556 IYGARQFFDMMHG-----KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFN 630 (748)
Q Consensus 556 ~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 630 (748)
+.-|.+.|+-.-+ ..+..-.++...+.-..++++++.+++....- +..|....-.+.++.+..|.+.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 3445555544332 22333445666666677788888888887775 33344334456788888899999999987
Q ss_pred HhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 041741 631 SMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIW-EVLLSSCRLHANVRLAKRAAEELFRLDPKNSA 709 (748)
Q Consensus 631 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 709 (748)
++ ....++-+.--...++++|.+.|.++-|++++-++..+.+...+ ..+...|...+++=-|-..+..+-.++| +|.
T Consensus 418 ~i-s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pE 495 (557)
T KOG3785|consen 418 RI-SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPE 495 (557)
T ss_pred hh-cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-Ccc
Confidence 77 33333333333456788999999999999998888733344343 4445568888888888888888888888 554
Q ss_pred ch
Q 041741 710 PY 711 (748)
Q Consensus 710 ~~ 711 (748)
.+
T Consensus 496 nW 497 (557)
T KOG3785|consen 496 NW 497 (557)
T ss_pred cc
Confidence 43
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=7.6e-09 Score=98.74 Aligned_cols=218 Identities=11% Similarity=0.000 Sum_probs=169.8
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 041741 481 SLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGAR 560 (748)
Q Consensus 481 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (748)
.-.|+.-.|..-|+..+.....++.. |..+...|....+.++....|......+ +-++.+|..-.+++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 44678888888899888764443332 7777788889999999999999888765 446777888888888899999999
Q ss_pred HHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhC
Q 041741 561 QFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHG 637 (748)
Q Consensus 561 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 637 (748)
.-|++..+ .++..|-.+..+..+.+++++++..|++.+.. ++.-...|+.....+..++++++|.+.|+... .
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~ 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---E 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---h
Confidence 99998875 35566777777777889999999999999986 56666889999999999999999999999874 2
Q ss_pred CCCC-------hhHHH--HHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 638 VEPI-------LDHYT--CMIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 638 ~~~~-------~~~~~--~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
+.|+ ...+. .++-.-. .+++..|..++++.. ..| ....+..+...-.+.|+.++|+++|++...+..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2333 22221 2222222 389999999999885 444 456788888889999999999999999887643
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.2e-08 Score=95.21 Aligned_cols=274 Identities=10% Similarity=-0.050 Sum_probs=199.5
Q ss_pred CCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHH---HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 041741 435 SHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSM---IAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATV 511 (748)
Q Consensus 435 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 511 (748)
++.+......+..++...|+...|+..|++....|+.+...| ...+...|+.+....+...+....- -+..-|-.-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhh
Confidence 344666778888888899999999999988887666554332 3345567888777777766654321 111122222
Q ss_pred HHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcC--C-CCHHHHHHHHHHHHHcCChh
Q 041741 512 LSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMH--G-KNTVTWNEMIHGYAQNGYGD 588 (748)
Q Consensus 512 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~ 588 (748)
.......++++.|..+-+...+.. +.+...+-.-..++...|+.++|.-.|+... . .+..+|..|+.+|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 223345567778877777766554 2234444444466778899999999998765 3 47889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-HHhc-CCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 041741 589 EAVRLYKDMIASGVKPDDITFVAIL-TACS-HSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLI 665 (748)
Q Consensus 589 ~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 665 (748)
+|.-+-+..... ++.+..++..+. ..|. ....-++|..++++.. .+.|+ ......+++.+...|..++++.++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 999988887775 456666776663 3443 3344678999988764 56777 556778899999999999999999
Q ss_pred hhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 041741 666 DEMP-CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLL 714 (748)
Q Consensus 666 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 714 (748)
++.. ..||......|...+...+.+.+|...|..+++++|+|-.+..-|
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 8875 778999999999999999999999999999999999874444333
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=1.6e-09 Score=101.06 Aligned_cols=277 Identities=14% Similarity=0.090 Sum_probs=196.3
Q ss_pred cCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHH
Q 041741 452 CQRNELAERVFHRIPEL---DIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVH 528 (748)
Q Consensus 452 ~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 528 (748)
.|++..|++...+..+. ....|..-..+....|+.+.+-.++.+..+..-.++.....+........|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45555555555544332 222344444556667777777777777765533555556666666777778888887777
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----------CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041741 529 AQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGK-----------NTVTWNEMIHGYAQNGYGDEAVRLYKDM 597 (748)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m 597 (748)
+.+.+.+ +-.+.......++|.+.|++.....++..+.+. ...+|+.+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777665 335666677778888888888888888877652 1235666776666666666666777776
Q ss_pred HHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHh
Q 041741 598 IASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPV 675 (748)
Q Consensus 598 ~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 675 (748)
-.+ .+-++..-..++.-+...|+.++|.++.+... +....|+ ...++ ...+-++...=.+..+... .+.+|.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 654 45566667777888889999999999988874 4455665 22222 2345566665555555442 456778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 676 IWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 676 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.+..|+..|.+.+.+.+|...++.++...| +...+..++.++.+.|+.++|.+.+++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 899999999999999999999999999999 889999999999999999999999998764
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=2.7e-08 Score=100.71 Aligned_cols=392 Identities=15% Similarity=0.106 Sum_probs=219.6
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHhhHHH
Q 041741 334 FEPDEVTSINMLVACVRSGDIKTGREMFDSMPS---PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKP-DRTTLAI 409 (748)
Q Consensus 334 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ 409 (748)
+..|...|..+.-++.+.|+++.+-+.|++... .....|..+...+...|.-..|..+++.-....-.| +...+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 444555555555566666666666666655543 333445556666666666666666665544332122 2222322
Q ss_pred HHHHhh-ccCChHHHHHHHHHHHhhc----CCchhHHHHHHHHHHHhc----C-------ChHHHHHHHhhCCCC---Cc
Q 041741 410 ILSSCA-AMGILESGKQVHAASLKTA----SHIDNYVASGLIGIYSKC----Q-------RNELAERVFHRIPEL---DI 470 (748)
Q Consensus 410 ll~~~~-~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~----~-------~~~~a~~~~~~~~~~---~~ 470 (748)
.-+.|. +.+..+++..+...++... ....+..+..+.-+|... . ...++...+++..+. |+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 233333 3345555555444444411 111222222232233221 1 123445555555432 22
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHh-CCCCchHHHHHHHHH
Q 041741 471 VCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKD-GYVNDIFVGSALIEM 549 (748)
Q Consensus 471 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 549 (748)
...--+.--|+..++.+.|++..++..+-+...+...|..+.-.+...+++..|..+.+..... |.... ....-++.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~--l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV--LMDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh--hchhhhhh
Confidence 2222233345666777777777777777655666677777777777777777777777665443 21000 00000111
Q ss_pred HHhcCCHHHHHHHhh--------------------------hcC----C--CCHHHHHHHHHHHHHcC---ChhHHHHHH
Q 041741 550 YCKCGDIYGARQFFD--------------------------MMH----G--KNTVTWNEMIHGYAQNG---YGDEAVRLY 594 (748)
Q Consensus 550 ~~~~g~~~~A~~~~~--------------------------~~~----~--~~~~~~~~l~~~~~~~~---~~~~a~~~~ 594 (748)
-..-++.++|..... .+. + ..+.++..+.......+ ..+..
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---- 632 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---- 632 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc----
Confidence 111233333322211 111 0 01122222221111111 11111
Q ss_pred HHHHHcCCC--CCH------HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHH
Q 041741 595 KDMIASGVK--PDD------ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLI 665 (748)
Q Consensus 595 ~~m~~~~~~--p~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 665 (748)
+...-+. |+. ..|......+...+..++|...+.+.. ++.| ....|...+..+...|.+.+|.+.|
T Consensus 633 --Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 633 --LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred --cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 1111111 221 235566667788888999988877763 3333 3666778888999999999999998
Q ss_pred hhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 666 DEMP-CKD-DPVIWEVLLSSCRLHANVRLAKR--AAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 666 ~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.... ..| .+....+++..+...|+..-|.. .+..+++++|.++.+++.||.++.+.|+.++|.+.|.-..+
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 8775 455 57788889999999998888888 99999999999999999999999999999999999987654
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=2.2e-09 Score=96.84 Aligned_cols=270 Identities=11% Similarity=0.025 Sum_probs=150.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHhcCChHHH
Q 041741 382 SENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHID---NYVASGLIGIYSKCQRNELA 458 (748)
Q Consensus 382 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 458 (748)
.++.++|.++|-+|.+. -+.+..+-.++-+.+.+.|..|.|..+...+.++..-+. ......|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45666777777666653 122223334444556666666666666665554332221 12233455555666666666
Q ss_pred HHHHhhCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhC
Q 041741 459 ERVFHRIPELDI---VCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDG 535 (748)
Q Consensus 459 ~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 535 (748)
+.+|..+.+... ...-.|+..|-...+|++|++.-.++.+.+..+...-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 666655554222 23344555555555666666555555544333322111
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 041741 536 YVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKN---TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAI 612 (748)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 612 (748)
...|..+...+....+++.|..++.+..+.| +..--.+.+.+...|++..|++.|+...+.+..--..+...|
T Consensus 180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 180 ----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 1234445555556667777777777665432 233334567777788888888888888776433334567777
Q ss_pred HHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHH-HhhCCCCCCHhHHHHHHHHHHh
Q 041741 613 LTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEML-IDEMPCKDDPVIWEVLLSSCRL 686 (748)
Q Consensus 613 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~ 686 (748)
..+|...|+.++....+.++. ...+....-..+.+.-....-.+.|... .+.+..+|+...+..++..-..
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~---~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAM---ETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHH---HccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc
Confidence 778888888888877777764 2334444444455544444444444444 4445567777777777766443
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.7e-08 Score=98.83 Aligned_cols=434 Identities=13% Similarity=0.113 Sum_probs=261.6
Q ss_pred HHHHHHhcCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHH--HHHHH--Hh
Q 041741 278 LLDMYAKNGDMDSAEVIFSNLPE---RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSIN--MLVAC--VR 350 (748)
Q Consensus 278 li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~--~~ 350 (748)
=++.+...|++++|.+....+.. .+...+..-+-++++.+.+++|+.+.+.-.. ..+++. +=.+| .+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence 35566788899999988887765 3556788888889999999999966554221 112222 23444 47
Q ss_pred cCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHH-HHHHHhhccCChHHHHHHHHH
Q 041741 351 SGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLA-IILSSCAAMGILESGKQVHAA 429 (748)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~ 429 (748)
.+..++|...++.....+..+...-...+.+.|++++|+++++.+.+++..-...-.. .++.+-.. -.+. ...
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~--~~q 165 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ--LLQ 165 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH--HHH
Confidence 8999999999996666665566666788899999999999999998775432222111 11111110 0000 011
Q ss_pred HHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCC--------CCCcc----------hHHHHHHHHHhCCCchHHHH
Q 041741 430 SLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIP--------ELDIV----------CWNSMIAGLSLNSLDIEAFM 491 (748)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~----------~~~~li~~~~~~~~~~~a~~ 491 (748)
........+...+-.....+...|++..|+++++... +.|.. .-.-+...+...|+.++|.+
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 1111111122333334556778999999999998772 11111 12234456778999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH---hhcCCCCchh--HHHHHHHHHH-----------hCCCCchHHHHHHHHHHHhcCC
Q 041741 492 FFKQMRQNEMYPTQFSFATVLS---SCAKLSSSFQ--GRQVHAQIEK-----------DGYVNDIFVGSALIEMYCKCGD 555 (748)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~---~~~~~~~~~~--a~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~ 555 (748)
++...++.. ++|........+ +.....++.. +...++.... ....-.+..-+.++.. -.+.
T Consensus 246 iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l--~tnk 322 (652)
T KOG2376|consen 246 IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL--FTNK 322 (652)
T ss_pred HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhh
Confidence 999998875 344433332222 2222222222 1111111100 0000011111222332 2456
Q ss_pred HHHHHHHhhhcCCCC-HHHHHHHHHHH-H-HcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcCCCChHHHHHHHH
Q 041741 556 IYGARQFFDMMHGKN-TVTWNEMIHGY-A-QNGYGDEAVRLYKDMIASGVKPDD--ITFVAILTACSHSGLVDVGVEIFN 630 (748)
Q Consensus 556 ~~~A~~~~~~~~~~~-~~~~~~l~~~~-~-~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~ 630 (748)
-+.+.++........ ...+.+++..+ . +...+..+.+++...-+. .|.. ...-..+......|+++.|++++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 667777777666533 23344444332 2 223577788888887775 3433 445556667788999999999998
Q ss_pred --------HhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--------CCCC-HhHHHHHHHHHHhcCCHHHH
Q 041741 631 --------SMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--------CKDD-PVIWEVLLSSCRLHANVRLA 693 (748)
Q Consensus 631 --------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~~~~~~~~~a 693 (748)
.+ .+.+..| .+...+...+.+.++.+-|..++.+.. ..+. ...+..+...-.+.|+-++|
T Consensus 401 ~~~~~~~ss~-~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSI-LEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhh-hhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 44 3444455 445668888888888777777666552 1221 23444555555677999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHH
Q 041741 694 KRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRE 732 (748)
Q Consensus 694 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 732 (748)
...++++++.+|++..++..+..+|.... .+.|..+=+
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 99999999999999999999998887663 466665544
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=2e-09 Score=97.11 Aligned_cols=229 Identities=12% Similarity=0.089 Sum_probs=155.5
Q ss_pred HHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCC--------HHHHHHHHHHHHH
Q 041741 512 LSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKN--------TVTWNEMIHGYAQ 583 (748)
Q Consensus 512 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~ 583 (748)
..-|...|-+++|..+|..+...+ .........|+..|-+..+|++|.+.-+++.+-+ ...|.-|...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 334444555555555555544432 2233444566677777777777777666554311 1235556677777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 041741 584 NGYGDEAVRLYKDMIASGVKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAE 662 (748)
Q Consensus 584 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 662 (748)
..+.+.|..++.+..+.+ |+. ..-..+.+.....|+++.|++.++... .....--..+...|..+|...|+.++..
T Consensus 193 ~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~-eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 193 SSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVL-EQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 889999999999999964 444 344566778899999999999999984 3332233567788999999999999999
Q ss_pred HHHhhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHh---hcCChHHHHHHHHHHHhcC
Q 041741 663 MLIDEMP-CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYS---SLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 663 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~ 738 (748)
.++.++. ..+.+.....+........=.+.|...+.+-+...| +......|..... ..|.+.+.+..++.|....
T Consensus 270 ~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 270 NFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 9998875 556666665666554444446678888888888899 4444455544442 3356888888999998877
Q ss_pred CCCCCCC
Q 041741 739 IVKDPAY 745 (748)
Q Consensus 739 ~~~~~~~ 745 (748)
++..|.|
T Consensus 349 l~~~~~Y 355 (389)
T COG2956 349 LRRKPRY 355 (389)
T ss_pred HhhcCCc
Confidence 7777754
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=1.8e-10 Score=98.86 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=117.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHH
Q 041741 574 WNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDC 651 (748)
Q Consensus 574 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~ 651 (748)
...|.-.|...|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|++.. .+.|+ -+..+..+.-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 344666777788888888888887775 3444 567777777778888888888877764 44454 4567777777
Q ss_pred HHhcCChHHHHHHHhhCCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHH
Q 041741 652 LGRAGHFHEAEMLIDEMPCKD----DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDL 727 (748)
Q Consensus 652 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 727 (748)
+|..|++++|...|++....| -+.+|..++.+..+.|+++.|.+.++++++.+|+++.+...++..+++.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 788888888888887775333 2567777777777788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcC
Q 041741 728 RAVRELMSENC 738 (748)
Q Consensus 728 ~~~~~~~~~~~ 738 (748)
..+++....++
T Consensus 193 r~~~~~~~~~~ 203 (250)
T COG3063 193 RLYLERYQQRG 203 (250)
T ss_pred HHHHHHHHhcc
Confidence 88877765544
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=1.9e-08 Score=101.72 Aligned_cols=428 Identities=14% Similarity=0.058 Sum_probs=241.8
Q ss_pred cCCCchHHHHHHHHHHHhcCChhHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHH
Q 041741 267 GFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPER---SVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSIN 343 (748)
Q Consensus 267 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 343 (748)
.+..+..+|..|.-+...+|+++.+.+.|+....- ....|+.+...+...|.-..|..+++.-......|+..+...
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34567777777777888888888888888776542 334677777777777777778777776554433344444333
Q ss_pred HHH-HHH-hcCCHHHHHHHhccCCC--------CCcchHHHHHHHHHcc----C-------CHHHHHHHHHHHHHcCCCC
Q 041741 344 MLV-ACV-RSGDIKTGREMFDSMPS--------PSVSSWNAMLSSYSQS----E-------NHKEAIKLFREMQFRGVKP 402 (748)
Q Consensus 344 ll~-~~~-~~~~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~----~-------~~~~a~~~~~~m~~~g~~p 402 (748)
++. .|. +.+..+++++.-.++.. ..+..|..+.-+|... . ...++++.+++..+.+ .-
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 333 222 34555554443322221 2233333333333211 1 1234555566655542 11
Q ss_pred CHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHH---HHHH
Q 041741 403 DRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNS---MIAG 479 (748)
Q Consensus 403 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---li~~ 479 (748)
|+.....+---++-.++++.|........+.+...+...+..++-++...+++.+|+.+.+...+.-...++. -+..
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 2222222223344556666677666666666555566666666666666666666666665544221111111 1111
Q ss_pred HHhCCCchHHHHHHHHHHHC--CCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCC--chHHHHHHH---HHHHh
Q 041741 480 LSLNSLDIEAFMFFKQMRQN--EMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVN--DIFVGSALI---EMYCK 552 (748)
Q Consensus 480 ~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~---~~~~~ 552 (748)
-..-++.++++.....+..- ...+-..+ ++-.........+.-.-..| .+.++..+. ..-.+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 12234444444444443321 00000000 00000111111110000011 112222221 11111
Q ss_pred cCCHHHHHHHhhhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 041741 553 CGDIYGARQFFDMMHGKN------TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGV 626 (748)
Q Consensus 553 ~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 626 (748)
.-.++.....+.....|+ ...|......+.+.++.++|...+.+.... .+-....|......+...|.+++|.
T Consensus 626 ~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred hcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHH
Confidence 112222222222222333 235666777888899999999898888875 3445567778888889999999999
Q ss_pred HHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHH--HHhhCC-C-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041741 627 EIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEM--LIDEMP-C-KDDPVIWEVLLSSCRLHANVRLAKRAAEELF 701 (748)
Q Consensus 627 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 701 (748)
+.|.... .+.|+ +.+...++.++.+.|+..-|.. ++..+. . +.++..|..++..+...||.++|.+.|..++
T Consensus 705 ~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 705 EAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 9998764 66776 7788899999999998887777 777775 4 4468999999999999999999999999999
Q ss_pred hcCCCCCcc
Q 041741 702 RLDPKNSAP 710 (748)
Q Consensus 702 ~~~p~~~~~ 710 (748)
++++.+|.-
T Consensus 782 qLe~S~PV~ 790 (799)
T KOG4162|consen 782 QLEESNPVL 790 (799)
T ss_pred hhccCCCcc
Confidence 999887753
No 67
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.29 E-value=1.7e-07 Score=94.04 Aligned_cols=343 Identities=11% Similarity=0.059 Sum_probs=167.5
Q ss_pred HHHHhcCCHHHHHHHhccCCCCCc--chHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHH
Q 041741 346 VACVRSGDIKTGREMFDSMPSPSV--SSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESG 423 (748)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 423 (748)
.+......+.+|+.+++.+...++ ..|..+.+.|...|+++.|.++|.+. ..+...+..|.+.|.+..|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 344445555555555555544322 22444445555555555555555432 1233344555555555555
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 041741 424 KQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYP 503 (748)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 503 (748)
.++..+.. |+......|-.-..-.-+.|++.+|++++-.+..|+. -|..|-+.|..+..+.+..+-... .
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~ 880 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---H 880 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---h
Confidence 55443332 2222333344444445566777777777766666653 356677777777766665543211 1
Q ss_pred CHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHH------
Q 041741 504 TQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEM------ 577 (748)
Q Consensus 504 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l------ 577 (748)
-..|-..+..-+...|+...|.+-|-+.. -|.+-+.+|-..+-|++|.++-+.--..|..-....
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh
Confidence 12344455556666777777766554332 234555666667777777766554322221111111
Q ss_pred -----HHHH-------------HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhh-----
Q 041741 578 -----IHGY-------------AQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQL----- 634 (748)
Q Consensus 578 -----~~~~-------------~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 634 (748)
+..+ +..+-++-|.++-+-..+.. .|.. ...+..-+...|++++|-..+-+..+
T Consensus 952 ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 952 GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 1111 12222233333222222211 1111 11223334566777777554443321
Q ss_pred ----------------hhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 041741 635 ----------------DHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAE 698 (748)
Q Consensus 635 ----------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 698 (748)
..|.+|.. .+.++.+..+|..|.++-+.--...-+.++..-.......||+.+|+..+-
T Consensus 1029 itwcqavpsrfd~e~ir~gnkpe~-----av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fll 1103 (1636)
T KOG3616|consen 1029 ITWCQAVPSRFDAEFIRAGNKPEE-----AVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLL 1103 (1636)
T ss_pred chhhhcccchhhHHHHHcCCChHH-----HHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhhee
Confidence 11222221 234455555555555554432211124555555566667788888877765
Q ss_pred HHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHH
Q 041741 699 ELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRE 732 (748)
Q Consensus 699 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 732 (748)
++ ..|+ ...+-|...+.|.+|+++-+
T Consensus 1104 ra--nkp~------i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1104 RA--NKPD------IALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred ec--CCCc------hHHHHHHHhccChHHHHHHH
Confidence 42 2442 23455677788888876654
No 68
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.29 E-value=3.1e-07 Score=92.19 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHH
Q 041741 545 ALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDV 624 (748)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 624 (748)
.-.+-+-+.|++.+|.+++-.+..|+. .|..|-+.|..++.+++.++-... .-..|-..+..-+...|++..
T Consensus 829 akaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lka 900 (1636)
T KOG3616|consen 829 AKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKA 900 (1636)
T ss_pred HhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhH
Confidence 333344455666666666655555543 244555666666655555442111 111244445555555566655
Q ss_pred HHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 041741 625 GVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLID 666 (748)
Q Consensus 625 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 666 (748)
|..-|-+. ..|...+++|...+.|++|.++-+
T Consensus 901 ae~~flea----------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 901 AEEHFLEA----------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHhh----------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 55554433 113344455555555555555443
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=1.4e-09 Score=109.23 Aligned_cols=233 Identities=14% Similarity=0.100 Sum_probs=174.8
Q ss_pred CHHHHHHHHHhhcCCCCchhHHHHHHHHHHh-----C-CCCch-HHHHHHHHHHHhcCCHHHHHHHhhhcCC-------C
Q 041741 504 TQFSFATVLSSCAKLSSSFQGRQVHAQIEKD-----G-YVNDI-FVGSALIEMYCKCGDIYGARQFFDMMHG-------K 569 (748)
Q Consensus 504 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~ 569 (748)
-..+...+...|...|+++.|..+++...+. | ..|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677888888999999998888877654 2 12232 2344577788899999999988887652 2
Q ss_pred ----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhC-
Q 041741 570 ----NTVTWNEMIHGYAQNGYGDEAVRLYKDMIAS-----GVK-PDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHG- 637 (748)
Q Consensus 570 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~-p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 637 (748)
-..+++.|...|.+.|++++|..++++..+- |.. |.. ..++.+...|...+++++|..+++...+...
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 2346777888999999999988888776642 222 222 2467777888999999999999998755443
Q ss_pred -CCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCC-------CC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041741 638 -VEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEMP-------CK--D-DPVIWEVLLSSCRLHANVRLAKRAAEELFR 702 (748)
Q Consensus 638 -~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 702 (748)
+.++ ..++..|+..|...|++++|.++++++. .+ + ....++.+...|.+.+.++.|.+.|..+..
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2222 4568899999999999999999998873 11 1 256778888889899999989998888776
Q ss_pred c----CCCCC---cchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 703 L----DPKNS---APYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 703 ~----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
+ .|+.| .+|..|+.+|...|++++|.++.+...+
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4 45443 4699999999999999999999887653
No 70
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=4.5e-06 Score=87.19 Aligned_cols=144 Identities=16% Similarity=0.224 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHH
Q 041741 570 NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMI 649 (748)
Q Consensus 570 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 649 (748)
.+..|+.+..+-.+.|...+|++-|-+ ..|+..|.-++..+.+.|.|++-+.++.-. ++..-.|.+++ .++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~Ma-Rkk~~E~~id~--eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMA-RKKVREPYIDS--ELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHH-HHhhcCccchH--HHH
Confidence 455788899999999998888877654 245567899999999999999999988766 45566676654 588
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHH
Q 041741 650 DCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRA 729 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 729 (748)
-+|++.++..+-.+++ ..|+.......+..|...|.++.|+-.|.. .+.+..|+..+...|.+..|..
T Consensus 1174 ~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 8999999988876655 357777778888888888888888777753 4556778888888888888877
Q ss_pred HHHHH
Q 041741 730 VRELM 734 (748)
Q Consensus 730 ~~~~~ 734 (748)
.-+++
T Consensus 1242 ~aRKA 1246 (1666)
T KOG0985|consen 1242 AARKA 1246 (1666)
T ss_pred Hhhhc
Confidence 65543
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.23 E-value=1.5e-06 Score=86.57 Aligned_cols=569 Identities=12% Similarity=0.038 Sum_probs=290.8
Q ss_pred hhcCCChhHHHHhhccCCCC---CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHh
Q 041741 64 QCKSDDLEFAYKLFDEMPER---NVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGR 140 (748)
Q Consensus 64 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 140 (748)
++.-|+-++|......-.+. +.+.|..+.-.+-.-.++++|+++|...... .||
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~d--------------------- 107 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKD--------------------- 107 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCC---------------------
Confidence 44446666666666554442 3344666666666666677777777666653 232
Q ss_pred HHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCC---CCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 041741 141 RCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSE---PNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAV 217 (748)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 217 (748)
+..++..+--.=+..|+++.....-.+..+ .....|..+..+..-.|+...|..+++...+...
T Consensus 108 -------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 108 -------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred -------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222222222222233444433333333222 2334577777777888999999999988877542
Q ss_pred -CCCcccHHHHHHHHhccCCCCCcchhcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhc
Q 041741 218 -SIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFS 296 (748)
Q Consensus 218 -~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 296 (748)
.|+...+.......-+ .....+.|..+.|.+.+.
T Consensus 175 ~~~s~~~~e~se~~Ly~---------------------------------------------n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQ---------------------------------------------NQILIEAGSLQKALEHLL 209 (700)
T ss_pred cCCCHHHHHHHHHHHHH---------------------------------------------HHHHHHcccHHHHHHHHH
Confidence 3444443332222111 123345667777777766
Q ss_pred cCCCC--C-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHH-HHHhcCCHHHHH-HHhccCCC--CCc
Q 041741 297 NLPER--S-VVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLV-ACVRSGDIKTGR-EMFDSMPS--PSV 369 (748)
Q Consensus 297 ~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~--~~~ 369 (748)
..... | ...-.+....+.+.+++++|..++..++.. .||...|...+. ++.+..+.-++. .+|....+ |..
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 55432 1 223334556677889999999999999886 477777666665 443333333333 66665543 111
Q ss_pred ch-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHH----hhc----------
Q 041741 370 SS-WNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASL----KTA---------- 434 (748)
Q Consensus 370 ~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~---------- 434 (748)
.. -..=+.......-.+..-.++..+.+.|+++--..+..+..- ....+-.+++.-... ..+
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~---p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD---PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc---hhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 11 111111111223344556677778888877655444444321 111111111111111 010
Q ss_pred CCchhHHH--HHHHHHHHhcCChHHHHHHHhhCCCCCcchHHH---HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 041741 435 SHIDNYVA--SGLIGIYSKCQRNELAERVFHRIPELDIVCWNS---MIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFA 509 (748)
Q Consensus 435 ~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 509 (748)
-+|...+| ..++.-|-+.|+++.|...++.....++..+.. -.+.+...|+.++|..++++..+-. .||...-.
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INs 443 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINS 443 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHH
Confidence 12333333 345666777888888888888777655543332 3466777888888888887777543 34443333
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHhCCCC--chH----HHH--HHHHHHHhcCCHHHHHHHhhhcCC------CCHHHHH
Q 041741 510 TVLSSCAKLSSSFQGRQVHAQIEKDGYVN--DIF----VGS--ALIEMYCKCGDIYGARQFFDMMHG------KNTVTWN 575 (748)
Q Consensus 510 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~----~~~--~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~ 575 (748)
.-.....+.+..++|.++...+.+.|... +.. +|- .-..+|.+.|++..|++-|..+.+ .|...|.
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfh 523 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFH 523 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHH
Confidence 44455556677778888777777766411 100 111 113456666666666665555432 1111111
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhh-CCCCChhHHHHHH----H
Q 041741 576 EMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDH-GVEPILDHYTCMI----D 650 (748)
Q Consensus 576 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~----~ 650 (748)
.-|.+.|-+..=+++++.--...-.|.- +.. ...|++++=+|.... ...+.......+. .
T Consensus 524 ---tyc~rk~tlrsYv~ll~~~d~L~~~p~y--~~A----------a~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk 588 (700)
T KOG1156|consen 524 ---TYCMRKGTLRSYVELLEWEDNLRSSPYY--LRA----------AKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKK 588 (700)
T ss_pred ---HHHHhcCcHHHHHHHHHHHHhhccChHH--HHH----------HHHHHHHHHHHhcCcccccccchhhhhccHHHHH
Confidence 1123333333222222211111001111 110 123444444442111 0001111122221 1
Q ss_pred HHHhc-CChHHHHHHHhhC--------------CCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCcchHHH
Q 041741 651 CLGRA-GHFHEAEMLIDEM--------------PCKDDPVIWEVLLSSCRLHANV-RLAKRAAEELFRLDPKNSAPYSLL 714 (748)
Q Consensus 651 ~~~~~-g~~~~A~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l 714 (748)
...+. .+...|...-+.+ +..+|.+ .+...+....++ ++|...+..+....++++.++..-
T Consensus 589 ~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~ 665 (700)
T KOG1156|consen 589 IKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILS 665 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhh
Confidence 11111 1111111111111 1223333 334445555554 779999999999999999999999
Q ss_pred hHHHhhcCChHHHHHHHHHHHhc
Q 041741 715 ANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
..+|.+.|++.-|.+.++++...
T Consensus 666 ~ely~rk~k~~l~~~~~~~~~~~ 688 (700)
T KOG1156|consen 666 FELYYRKGKFLLALACLNNAEGI 688 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999987653
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=7.6e-08 Score=88.08 Aligned_cols=148 Identities=14% Similarity=0.036 Sum_probs=89.9
Q ss_pred HHHhhcCCChhHHHHhhccCCCCC----chhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCc
Q 041741 61 LSAQCKSDDLEFAYKLFDEMPERN----VVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDV 136 (748)
Q Consensus 61 ~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 136 (748)
+.-+...+++..|+.+++--...+ ..+-.-+..++.+.|++++|..+|+.+.+.. .|+......+..+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 444555678888888876443211 1112235667888999999999998887753 45555566666666677888
Q ss_pred HHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 041741 137 EHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMIRK 215 (748)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (748)
.+|+.+.+... .++-.-..|++...+.|+-++-..+-..+...... --++.......-.+.+|+++|...+..
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~Ed-qLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLED-QLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHH-HHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88887765432 23333444555556677766666655555432222 222333333445578888888887754
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=5.4e-10 Score=108.17 Aligned_cols=116 Identities=9% Similarity=-0.107 Sum_probs=59.0
Q ss_pred CCCchHHHHHHHHHHHCC-CCCC--HHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHH
Q 041741 483 NSLDIEAFMFFKQMRQNE-MYPT--QFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGA 559 (748)
Q Consensus 483 ~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 559 (748)
.+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|....+.. +.++..|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 344455666665555432 1121 2234444444555555555555555555443 22445555555555555555555
Q ss_pred HHHhhhcCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041741 560 RQFFDMMHG--K-NTVTWNEMIHGYAQNGYGDEAVRLYKDMIA 599 (748)
Q Consensus 560 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 599 (748)
.+.|+...+ | +...|..++.++...|++++|++.+++..+
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555432 2 334455555555555555555555555555
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=7e-10 Score=99.91 Aligned_cols=195 Identities=11% Similarity=0.011 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 041741 540 IFVGSALIEMYCKCGDIYGARQFFDMMHG--KN-TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTAC 616 (748)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 616 (748)
+.+|-.|-.+|.+..++..|+.++.+..+ |. +....-+.+.+...++.++|.++++...+.. +.+......+...|
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~y 334 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGY 334 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceeeeeeeecc
Confidence 33344445555555555555555555443 32 2223335556666667777777777776652 33444555555566
Q ss_pred cCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCC--CHhHHHHHHHHHHhcCCHH
Q 041741 617 SHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP---CKD--DPVIWEVLLSSCRLHANVR 691 (748)
Q Consensus 617 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~ 691 (748)
.-.++.+-|+.+++++. ..|+ .+...|..++-+|.-.+++|-++.-|++.. ..| ..++|..+.......||+.
T Consensus 335 fY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n 412 (478)
T KOG1129|consen 335 FYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN 412 (478)
T ss_pred ccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchH
Confidence 66677777777777773 4443 234556777777777777777777766653 223 3678888888889999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 692 LAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 692 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
.|.+.++-++..+|++..++..|+.+-.+.|+.++|..++..++..
T Consensus 413 lA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 413 LAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999987664
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=5.7e-09 Score=110.88 Aligned_cols=241 Identities=10% Similarity=0.016 Sum_probs=170.0
Q ss_pred chHHHHHHHHHHHCCCCCCH-HHHHHHHHhhc---------CCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 041741 486 DIEAFMFFKQMRQNEMYPTQ-FSFATVLSSCA---------KLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGD 555 (748)
Q Consensus 486 ~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 555 (748)
.++|...|++..+. .|+. ..+..+..++. ..+++++|...+++..+.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 45777777777654 4433 33333332221 3345778888888877765 3466777788888889999
Q ss_pred HHHHHHHhhhcCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCChHHHHHHHHH
Q 041741 556 IYGARQFFDMMHG--K-NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDI-TFVAILTACSHSGLVDVGVEIFNS 631 (748)
Q Consensus 556 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~ 631 (748)
+++|...|++..+ | +...+..+...+...|++++|+..++++.+. .|+.. .+..++..+...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999998764 3 5667888899999999999999999999985 45532 333444456668999999999988
Q ss_pred hhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 041741 632 MQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDD-PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS 708 (748)
Q Consensus 632 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 708 (748)
+... ..|+ ...+..++.++...|++++|...++++. ..|+ ...+..+...+...| ++|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 7422 2343 4456778899999999999999998875 3444 344455555666666 477777777777543333
Q ss_pred cchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 709 APYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
........+|.-.|+.+.+... +++.+
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 4444488888889998887777 77665
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1.6e-06 Score=88.49 Aligned_cols=146 Identities=17% Similarity=0.138 Sum_probs=87.6
Q ss_pred HHccCCchhhhhhhhcCCCCchhhhhHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041741 33 YSKCNNTHSAQHLFDKMPHKDIYSWNAILSAQCKSDDLEFAYKLFDEMPERNVVSWNNLISALVRNGLEEKALSVYNKMS 112 (748)
Q Consensus 33 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 112 (748)
|.--|++|.|.+..+.+. +-.+|.++.+.|.+.++++-|.-.+..|.. ...| +.+++..
T Consensus 738 yvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~------------------aRga-RAlR~a~ 796 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKN------------------ARGA-RALRRAQ 796 (1416)
T ss_pred EEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhh------------------hhhH-HHHHHHH
Confidence 344556666555544443 334566666666666666666554433321 1111 1222222
Q ss_pred hCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCC-CeehHHH
Q 041741 113 NEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEP-NEVTFTA 191 (748)
Q Consensus 113 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ 191 (748)
+.| + .+-.-+.-.....|.+++|+.+|...+..+ .|=+.|...|.|++|.++-+.-.+- =..||..
T Consensus 797 q~~---~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~ 863 (1416)
T KOG3617|consen 797 QNG---E-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYN 863 (1416)
T ss_pred hCC---c-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHH
Confidence 222 1 111222233456788899999998877653 4556788899999999988765442 2346777
Q ss_pred HHHHHHcCCCHHHHHHHHHHH
Q 041741 192 MMSGLAKTDRVVEALEMFRLM 212 (748)
Q Consensus 192 li~~~~~~g~~~~a~~~~~~m 212 (748)
....+-..++.+.|++.|++-
T Consensus 864 yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhc
Confidence 777788889999999999874
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=6.1e-11 Score=79.12 Aligned_cols=50 Identities=28% Similarity=0.478 Sum_probs=43.3
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhcc
Q 041741 83 RNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTA 132 (748)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 132 (748)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888888888888888888888888888888888888888888888764
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1e-09 Score=98.85 Aligned_cols=236 Identities=12% Similarity=0.068 Sum_probs=174.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 041741 475 SMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCG 554 (748)
Q Consensus 475 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 554 (748)
.+..+|.+.|.+.+|.+.|+.-... .|-..||..|-..|.+..++..|..++.+-... ++.++....-..+.+...+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 3445555555555555555555543 344455666666666666666666665554432 2345555556677778888
Q ss_pred CHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHH
Q 041741 555 DIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNS 631 (748)
Q Consensus 555 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 631 (748)
+.++|.++++...+ .++....++...|.-.++++-|+.+++++++.|+ -+...|+.+.-+|.-.++++-++..|++
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 99999999988764 3666777777888889999999999999999984 5667788888899999999999999998
Q ss_pred hhhhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041741 632 MQLDHGVEPI--LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN 707 (748)
Q Consensus 632 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 707 (748)
.. ...-.|+ .+.|-.++...+..||+.-|..-|+-.. ..| ....++.|.-.-.+.|+.++|..++.-+....|+-
T Consensus 384 Al-stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 384 AL-STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HH-hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 84 3344455 5678889999999999999999998775 333 46778888888889999999999999999999975
Q ss_pred CcchHHHh
Q 041741 708 SAPYSLLA 715 (748)
Q Consensus 708 ~~~~~~l~ 715 (748)
......++
T Consensus 463 ~E~~~Nl~ 470 (478)
T KOG1129|consen 463 AEVTTNLQ 470 (478)
T ss_pred ccccccee
Confidence 55544444
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=6.9e-07 Score=83.83 Aligned_cols=265 Identities=8% Similarity=-0.084 Sum_probs=193.9
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH-HHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHH
Q 041741 468 LDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFS-FATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSAL 546 (748)
Q Consensus 468 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 546 (748)
-|+.....+...+...|+.++|+..|++.+.. .|...+ ...-.-.+.+.|+.++...+...+.... .-+...|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 46777888999999999999999999988754 443322 1122223356677777777666665432 1122222223
Q ss_pred HHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCCh
Q 041741 547 IEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKP-DDITFVAILTACSHSGLV 622 (748)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~ 622 (748)
.......++++.|+.+-++..+ .++..+-.-...+...|++++|.-.|+..... .| +..+|..|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchH
Confidence 3344456789999999888775 35555655567888999999999999998874 54 557999999999999999
Q ss_pred HHHHHHHHHhhhhhCCCCChhHHHHHH-HHHH-hcCChHHHHHHHhhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHH
Q 041741 623 DVGVEIFNSMQLDHGVEPILDHYTCMI-DCLG-RAGHFHEAEMLIDEMP-CKDD-PVIWEVLLSSCRLHANVRLAKRAAE 698 (748)
Q Consensus 623 ~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 698 (748)
.+|.-.-+...... ..+..++..++ ..+. .-..-++|.+++++.. ..|+ ......+...+...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99988777664332 34445555443 3332 3344588999998875 6665 4566777888999999999999999
Q ss_pred HHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCCC
Q 041741 699 ELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCIV 740 (748)
Q Consensus 699 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 740 (748)
+.+...| |...+..|++++...+.+.+|+++|..+.+..++
T Consensus 463 ~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 463 KHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 9999999 7799999999999999999999999987765543
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.13 E-value=2.2e-07 Score=95.07 Aligned_cols=282 Identities=10% Similarity=0.037 Sum_probs=153.6
Q ss_pred HHHHHhcCChhHHHHHhccCCC--CC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH-h----
Q 041741 279 LDMYAKNGDMDSAEVIFSNLPE--RS-VVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACV-R---- 350 (748)
Q Consensus 279 i~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~---- 350 (748)
...+...|++++|++.++.... .| ..........+.+.|+.++|..++..+.+.+ |+...|...+..+. -
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3456788999999999987554 23 3467778888999999999999999999875 67777666666544 1
Q ss_pred -cCCHHHHHHHhccCCC--CCcchHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHH
Q 041741 351 -SGDIKTGREMFDSMPS--PSVSSWNAMLSSYSQSENH-KEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQV 426 (748)
Q Consensus 351 -~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 426 (748)
..+.+....+++.+.. |.......+.-.+.....+ ..+...+..+...|+++-- ..+-..|...........+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF---~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLF---SNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHH---HHHHHHHcChhHHHHHHHH
Confidence 2246667777777754 3333333332222222223 2455666777777766533 3333333433333333444
Q ss_pred HHHHHhhc--------------CCchhH--HHHHHHHHHHhcCChHHHHHHHhhCCCCCcc---hHHHHHHHHHhCCCch
Q 041741 427 HAASLKTA--------------SHIDNY--VASGLIGIYSKCQRNELAERVFHRIPELDIV---CWNSMIAGLSLNSLDI 487 (748)
Q Consensus 427 ~~~~~~~~--------------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~ 487 (748)
+....... -.|+.. ++..+...|...|++++|+..+++..+.++. .|..-...+-+.|++.
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 44333211 112221 2233445555666666666666655543322 3444455555666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCch--------HHHHHHHHHHHhcCCHHHH
Q 041741 488 EAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDI--------FVGSALIEMYCKCGDIYGA 559 (748)
Q Consensus 488 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A 559 (748)
+|.+.++..+... .-|...-+-.+..+.+.|+.+.|..++..+.+.+..|.. ........+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6666666555432 223333344445555556666666665555554432211 1112334455555555555
Q ss_pred HHHhhhc
Q 041741 560 RQFFDMM 566 (748)
Q Consensus 560 ~~~~~~~ 566 (748)
+..|..+
T Consensus 325 Lk~~~~v 331 (517)
T PF12569_consen 325 LKRFHAV 331 (517)
T ss_pred HHHHHHH
Confidence 5444443
No 81
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=5e-09 Score=111.31 Aligned_cols=210 Identities=14% Similarity=0.006 Sum_probs=162.4
Q ss_pred CchhHHHHHHHHHHhCCCCchHHHHHHHHHHHh---------cCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCCh
Q 041741 520 SSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCK---------CGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYG 587 (748)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 587 (748)
+.+.|...+++..+... -+...+..+..++.. .+++++|...+++..+ .+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 45678888888776542 234555555555442 3458899999998764 4677888899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHh
Q 041741 588 DEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPIL-DHYTCMIDCLGRAGHFHEAEMLID 666 (748)
Q Consensus 588 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 666 (748)
++|...++++.+.+ +.+...+..+..++...|++++|+..++++. ...|+. ..+..++..+...|++++|...++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999963 3345678888999999999999999999985 345553 233344556777899999999998
Q ss_pred hCC--CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 667 EMP--CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 667 ~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
+.. .+| ++..+..+...+...|++++|...++++....|.+......++..|...|+ +|...++.+.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 874 234 455677777788899999999999999988899888888889999998884 88887877665
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=9.9e-07 Score=86.87 Aligned_cols=216 Identities=15% Similarity=0.077 Sum_probs=126.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHH--hcC
Q 041741 92 ISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYA--KCG 169 (748)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g 169 (748)
++-+..+|++++|.+...++...+ +.+...+..=+-++.+.+.+++|..+.+ ..+.......+. +=++|| +.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~~~~~~~~~-fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGALLVINSFF-FEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcchhhhcchhh-HHHHHHHHHcc
Confidence 444556777777777777777643 3444455555556666677777663322 222111111110 344555 578
Q ss_pred ChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhccCCCCCcchhccccc
Q 041741 170 WTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVS-LSSVLGVCAREGCGVESDVFAQSDN 248 (748)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t-~~~ll~~~~~~~~~~~~~~~~~~~~ 248 (748)
+.|+|...++-..+.+..+...-.+.+.+.|++++|+++|+.+.+.+..--..- -..++.+-...
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------------- 159 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------------- 159 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh--------------
Confidence 999999999965555655777777889999999999999999987754322211 11122211111
Q ss_pred ccccccchhHHHHHHHHhcCCCchHHHHH---HHHHHHhcCChhHHHHHhccCC--------CCCcc----------cHH
Q 041741 249 KFSRNVHGQQVHCLTIKLGFEADLHLSNS---LLDMYAKNGDMDSAEVIFSNLP--------ERSVV----------SWN 307 (748)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~--------~~~~~----------~~~ 307 (748)
.. ..+......| ..+|.. ..-.+...|++.+|+++++... +.|.. .--
T Consensus 160 ---------~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 160 ---------QV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred ---------hH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 00 0122222222 223332 2345667899999999988762 11111 223
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCh
Q 041741 308 VMIAGYGQKYQSTKAIELLQRMKSCGFEPDE 338 (748)
Q Consensus 308 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 338 (748)
.+.-++...|+.++|..++...+... .+|.
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~ 258 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRN-PADE 258 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhc-CCCc
Confidence 34556677899999999998888765 3444
No 83
>PF13041 PPR_2: PPR repeat family
Probab=99.12 E-value=2.3e-10 Score=76.36 Aligned_cols=50 Identities=34% Similarity=0.683 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 041741 569 KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSH 618 (748)
Q Consensus 569 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 618 (748)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
No 84
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=1.6e-08 Score=95.81 Aligned_cols=194 Identities=13% Similarity=0.091 Sum_probs=116.0
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcC
Q 041741 509 ATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNG 585 (748)
Q Consensus 509 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 585 (748)
..+...+...|+++.|...++...+.. +.+...+..+...+...|++++|.+.+++..+ .+...+..+...+...|
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 333444444444444444444444332 22344455555666666666666666665442 34455666666777777
Q ss_pred ChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 041741 586 YGDEAVRLYKDMIASGVKP-DDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEML 664 (748)
Q Consensus 586 ~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 664 (748)
++++|...+++..+....| ....+..+...+...|++++|...+++.... .+.+...+..++..+...|++++|...
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776642222 2334556666777777777777777776422 122345566777777778888888777
Q ss_pred HhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 665 IDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 665 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
+++.. .+.++..+..+...+...|+.++|....+.+....|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 192 LERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 77663 233455555666667777788888777777665543
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.6e-07 Score=83.98 Aligned_cols=275 Identities=12% Similarity=0.038 Sum_probs=161.4
Q ss_pred hcCChHHHHHHHhhCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCHHHHHHHHHhhcCCCCchhHHHHH
Q 041741 451 KCQRNELAERVFHRIP-ELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQN-EMYPTQFSFATVLSSCAKLSSSFQGRQVH 528 (748)
Q Consensus 451 ~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 528 (748)
..+++..+..++++.+ +.+..+.+.......+.|+++.|++-|+...+- |..| ...|+..+ +..+.++...|..+.
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~i 201 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHI 201 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHH
Confidence 3556666666666666 344455555555556677777777777776663 3333 34454433 334556777777777
Q ss_pred HHHHHhCCCCch----------------------------HHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CCHHHHH
Q 041741 529 AQIEKDGYVNDI----------------------------FVGSALIEMYCKCGDIYGARQFFDMMHG-----KNTVTWN 575 (748)
Q Consensus 529 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 575 (748)
+++.+.|+...+ ..+|.-...+.+.|+++.|.+.+.+|+. -|++|..
T Consensus 202 SEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 202 SEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH 281 (459)
T ss_pred HHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh
Confidence 777666543221 1233333445678999999999999984 3667665
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCC-CChhHHHHHHHHHH-
Q 041741 576 EMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVE-PILDHYTCMIDCLG- 653 (748)
Q Consensus 576 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~- 653 (748)
.+.-.- ..+++.+..+-+.-+.+.+ +-...||..++-.|++..-++.|-.++-+-. +.-++ .+...|+ +.+++.
T Consensus 282 N~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt 357 (459)
T KOG4340|consen 282 NQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENA-HLTYKFLTPYLYD-LLDALIT 357 (459)
T ss_pred HHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHh
Confidence 543322 2455666677777777754 3445789999999999998998888875431 11111 1222233 334443
Q ss_pred hcCChHHHHHHHhhCCCCCCHhHHHHHHHH--HHhcCC---HHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHH
Q 041741 654 RAGHFHEAEMLIDEMPCKDDPVIWEVLLSS--CRLHAN---VRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLR 728 (748)
Q Consensus 654 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 728 (748)
..-..++|.+-+..+...-........+.. -+..++ ...+.+.+++.+++.- .+....++.|++..|+.-++
T Consensus 358 ~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vE 434 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVE 434 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHH
Confidence 345677777666554311111111111111 122222 2345555666666543 56788899999999999999
Q ss_pred HHHHHH
Q 041741 729 AVRELM 734 (748)
Q Consensus 729 ~~~~~~ 734 (748)
+.|+.-
T Consensus 435 k~Fr~S 440 (459)
T KOG4340|consen 435 KIFRKS 440 (459)
T ss_pred HHHHHH
Confidence 999864
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=9.1e-08 Score=96.49 Aligned_cols=130 Identities=14% Similarity=0.129 Sum_probs=86.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCCH----HHHHHHHHHhcCCCChHHHHHHHHHhhhhh-----CCCCC
Q 041741 574 WNEMIHGYAQNGYGDEAVRLYKDMIAS---GVKPDD----ITFVAILTACSHSGLVDVGVEIFNSMQLDH-----GVEPI 641 (748)
Q Consensus 574 ~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~ 641 (748)
++.++..+...+++++|..++++..+. -+.++. .+++.+...|...|++++|.++++++.... +..+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 334455555666666666666554431 011222 467788888888888888888888775432 11222
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041741 642 -LDHYTCMIDCLGRAGHFHEAEMLIDEMP-----CKD----DPVIWEVLLSSCRLHANVRLAKRAAEELFRL 703 (748)
Q Consensus 642 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 703 (748)
...++.++..|.+.+++.+|.++|.+.. ..| ...++..|+..|...|+++.|.++.+.+...
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3456778888888888888888776652 222 2467888888999999999999998888853
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.09 E-value=3.3e-06 Score=84.23 Aligned_cols=435 Identities=13% Similarity=0.067 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 041741 273 HLSNSLLDMYAKNGDMDSAEVIFSNLPER---SVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACV 349 (748)
Q Consensus 273 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 349 (748)
.+.....-.+...|+.++|.......... +.++|..+.-.+....++++|+..|......+ +-|...+.-+--.-.
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~ 120 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQI 120 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 34433334455678888888887776653 44678888888888889999999998887754 224444544444445
Q ss_pred hcCCHHHHHHHhccCCC---CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHH------HhhccCC
Q 041741 350 RSGDIKTGREMFDSMPS---PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGV-KPDRTTLAIILS------SCAAMGI 419 (748)
Q Consensus 350 ~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~------~~~~~~~ 419 (748)
..++++.....-..+.+ .....|..+..++.-.|+...|..++++..+... .|+...+..... .....|.
T Consensus 121 QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 121 QMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS 200 (700)
T ss_pred HHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 56666665555444443 2334466677777778888888888888877642 455555443321 2233344
Q ss_pred hHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCc--chHH-HHHHHHHhCCCchHHH-HHHHH
Q 041741 420 LESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDI--VCWN-SMIAGLSLNSLDIEAF-MFFKQ 495 (748)
Q Consensus 420 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~-~li~~~~~~~~~~~a~-~~~~~ 495 (748)
.+.+.+.+......-+. ....-..-...+.+.+++++|..++..+..+++ ..|. .+..++.+-.+.-+++ .+|..
T Consensus 201 ~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44444333322211110 011112223444555555555555555554322 2222 2222222222222222 33333
Q ss_pred HHHCCCCCCHHHHHHHHHhh-cCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHH
Q 041741 496 MRQNEMYPTQFSFATVLSSC-AKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTW 574 (748)
Q Consensus 496 m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 574 (748)
..+. .|.......+--.. ....-.+....++....+.|+++-... +...|-. ...+. ++
T Consensus 280 ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~---p~k~~-~l----------- 339 (700)
T KOG1156|consen 280 LSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---LRSLYKD---PEKVA-FL----------- 339 (700)
T ss_pred Hhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh---hHHHHhc---hhHhH-HH-----------
Confidence 3222 11111111000001 111111222333333344443332211 1111110 00000 11
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHH
Q 041741 575 NEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDI--TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDC 651 (748)
Q Consensus 575 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~ 651 (748)
..++..|...-.........+.-.. -+|... ++..++..+-..|+++.|..+++... +..|+ ++.|..-+++
T Consensus 340 e~Lvt~y~~~L~~~~~f~~~D~~~~--E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI 414 (700)
T KOG1156|consen 340 EKLVTSYQHSLSGTGMFNFLDDGKQ--EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARI 414 (700)
T ss_pred HHHHHHHHhhcccccCCCccccccc--CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHH
Confidence 1111111111000000000000000 145554 44566777888999999999998774 67888 5677777899
Q ss_pred HHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCcc---hHHHhHHHhh
Q 041741 652 LGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK------NSAP---YSLLANIYSS 720 (748)
Q Consensus 652 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~---~~~l~~~~~~ 720 (748)
+..+|++++|..++++.. ..+|..+-..-+....+.++.++|.+++.+-.+.+-+ +.+. ...-|.+|.+
T Consensus 415 ~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r 494 (700)
T KOG1156|consen 415 FKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLR 494 (700)
T ss_pred HHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHH
Confidence 999999999999998886 3455544445666677888999999888876665431 1111 2233667888
Q ss_pred cCChHHHHHHHHHH
Q 041741 721 LGRWDDLRAVRELM 734 (748)
Q Consensus 721 ~g~~~~A~~~~~~~ 734 (748)
+|++..|++=+..+
T Consensus 495 ~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 495 QNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHHhhH
Confidence 88888887655543
No 88
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.08 E-value=6.9e-07 Score=93.16 Aligned_cols=343 Identities=15% Similarity=0.019 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhC
Q 041741 386 KEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRI 465 (748)
Q Consensus 386 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 465 (748)
..|+..+...++. ..+...+-..+......|++.-+...+-......+. ....|..+.-.+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhh
Confidence 3566666666554 344444444455555556666666665555443332 4455666666777888888888888888
Q ss_pred CCCCcc---hHHHHHHHHHhCCCchHHHHHHHHH--H--HCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHh----
Q 041741 466 PELDIV---CWNSMIAGLSLNSLDIEAFMFFKQM--R--QNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKD---- 534 (748)
Q Consensus 466 ~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m--~--~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 534 (748)
...++. .|--........|+.-+++.+|..- . ..|--|+..-+..........|+.+.-+...+.+...
T Consensus 877 qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 877 QSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 765443 4444444445567777777776652 1 1233344443434444445556655444444333221
Q ss_pred -----CCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHHHHHH----HHHHHHHcCChhHHHHHHHHHHHc
Q 041741 535 -----GYVNDIFVGSALIEMYCKCGDIYGARQFFDMMH-----GKNTVTWNE----MIHGYAQNGYGDEAVRLYKDMIAS 600 (748)
Q Consensus 535 -----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~m~~~ 600 (748)
+.+.+...|........+.+.++.|.+...+.. +-+...|+. ..+.++..|.++.|..-+...-.
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~- 1035 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM- 1035 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch-
Confidence 333344555555555555555555555554432 123333442 23334444444433222211111
Q ss_pred CCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHH
Q 041741 601 GVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIW 677 (748)
Q Consensus 601 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 677 (748)
..+..+-..-+. ..-.++++++.+.|+++..-..-..+ +.....++-+....+..+.|...+-+.. .+++....
T Consensus 1036 --evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sl 1112 (1238)
T KOG1127|consen 1036 --EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSL 1112 (1238)
T ss_pred --hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhH
Confidence 111111111111 13356677777777766432222222 2233344455555666666666544442 34454444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCCcchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 678 EVLLSSCRLHANVRLAKRAAEELFR---LDPKNSAPYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 678 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
..+...+.--.+-.......+++.. ..--.-..-...--+|..+|+..-..+++++..
T Consensus 1113 l~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~ 1173 (1238)
T KOG1127|consen 1113 LPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAV 1173 (1238)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4444443333333333333333222 111122233344445666676666666666543
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=4e-08 Score=84.83 Aligned_cols=191 Identities=15% Similarity=0.080 Sum_probs=123.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC
Q 041741 544 SALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSG 620 (748)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 620 (748)
..|...|...|+...|..-+++..+ .+..+|..+...|.+.|+.+.|.+.|++..... +-+....|....-+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 3455566777777777777776654 234466667777777777777777777777642 223355666666667777
Q ss_pred ChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 041741 621 LVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAE 698 (748)
Q Consensus 621 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 698 (748)
++++|...|++...+..+.....+|..++-|-.++|+.+.|...+++.. .+..+.....+.......|++..|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 7777777777765443333345667777777777777777777776664 23345566666666667777777777777
Q ss_pred HHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 699 ELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 699 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
......+-+...+.+.+.+-...||-+.|-++=.++.
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7666666566666666666777777766666555443
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=2e-05 Score=80.72 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=69.6
Q ss_pred chHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCC
Q 041741 121 ITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTD 200 (748)
Q Consensus 121 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 200 (748)
..|...-.-+-..|+++.|..+|...+ -|-++++..|-+|+.++|-++-++- .|......+.+.|-..|
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhH
Confidence 344444444556788888888877644 3667888888899999998887763 46666777899999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhcc
Q 041741 201 RVVEALEMFRLMIRKAVSIDSVSLSSVLGVCARE 234 (748)
Q Consensus 201 ~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 234 (748)
++.+|...|.+.+ +|+..|+.|..+
T Consensus 982 ~v~~Av~FfTrAq---------afsnAIRlcKEn 1006 (1416)
T KOG3617|consen 982 DVVKAVKFFTRAQ---------AFSNAIRLCKEN 1006 (1416)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHhc
Confidence 9999999998875 456666666554
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=1.4e-07 Score=91.45 Aligned_cols=214 Identities=16% Similarity=0.053 Sum_probs=145.3
Q ss_pred CCchhHHHHHHHHHHh-CCCC--chHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHH
Q 041741 519 SSSFQGRQVHAQIEKD-GYVN--DIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVR 592 (748)
Q Consensus 519 ~~~~~a~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 592 (748)
+..+.+..-+.++... ...| ....+..+...|...|++++|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445555555555543 2222 245677778888899999999999887764 467789999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 041741 593 LYKDMIASGVKPD-DITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCK 671 (748)
Q Consensus 593 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 671 (748)
.|++..+. .|+ ...+..+..++...|++++|++.+++.. ...|+..........+...+++++|...+++....
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al---~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFY---QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999884 454 4677788888888999999999998885 33454332222333445677899999998665311
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 672 DDPVIWEVLLSSCRLHANVRLAKRAAEELF-------RLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 672 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
.++..|. ........|+...+ ..++.+. ++.|+.+.+|..+|.++.+.|++++|+.+|++..+.++
T Consensus 195 ~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1222222 12222234444332 2333333 45666778899999999999999999999998876554
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=5.7e-07 Score=87.68 Aligned_cols=396 Identities=11% Similarity=0.043 Sum_probs=209.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--CC-cchHHHHHHHHHccCCHHH
Q 041741 311 AGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPS--PS-VSSWNAMLSSYSQSENHKE 387 (748)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~ 387 (748)
.+....|+++.|+.+|-....... ++...|..-..++...|++++|.+--.+-.+ |+ +..|+....++...|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 455678899999999988877653 3777888888889999998888765544443 32 3468888888888889999
Q ss_pred HHHHHHHHHHcCCCCCHh-hHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHH-----HHHhcCChHHHHHH
Q 041741 388 AIKLFREMQFRGVKPDRT-TLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIG-----IYSKCQRNELAERV 461 (748)
Q Consensus 388 a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~ 461 (748)
|+.-|.+-.+. .|+.. .+..+..+... +.+. .....++.++..+.. .+.....+-.-+..
T Consensus 89 A~~ay~~GL~~--d~~n~~L~~gl~~a~~~----~~~~--------~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 89 AILAYSEGLEK--DPSNKQLKTGLAQAYLE----DYAA--------DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HHHHHHHHhhc--CCchHHHHHhHHHhhhH----HHHh--------hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 99888876664 45443 34444444311 1000 000001111111110 00001111111111
Q ss_pred HhhCCCCCcch---HHHHHHHHHhC---C----------------Cch----HHHHHHHHHHH-CCCCCCHHHHHHHHHh
Q 041741 462 FHRIPELDIVC---WNSMIAGLSLN---S----------------LDI----EAFMFFKQMRQ-NEMYPTQFSFATVLSS 514 (748)
Q Consensus 462 ~~~~~~~~~~~---~~~li~~~~~~---~----------------~~~----~a~~~~~~m~~-~~~~p~~~~~~~l~~~ 514 (748)
++..+. ++.. ...++.+.... + .+. .......++.. ....--..-...+.++
T Consensus 155 ~~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna 233 (539)
T KOG0548|consen 155 IQKNPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA 233 (539)
T ss_pred hhcCcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence 111110 0000 00011100000 0 000 00000000000 0000001123345555
Q ss_pred hcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCC---HH-------HHHHHHHHHHHc
Q 041741 515 CAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKN---TV-------TWNEMIHGYAQN 584 (748)
Q Consensus 515 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-------~~~~l~~~~~~~ 584 (748)
..+..+++.+.+-+....... -++.-++....+|...|.+..+........+.. .. .+..+..++.+.
T Consensus 234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 556666666666666666554 445555666666777776666665555443311 11 122234456666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChh-HHHHHHHHHHhcCChHHHHH
Q 041741 585 GYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILD-HYTCMIDCLGRAGHFHEAEM 663 (748)
Q Consensus 585 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 663 (748)
++++.++..|++.+...-.|+..+ +....+++....+.. .-+.|... -...-+..+.+.|++..|+.
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 777777777777666544443321 122233333333322 23344421 12233666777788888888
Q ss_pred HHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 664 LIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 664 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.|.++. .+.|+..|.....+|...|.+..|..-.+..++++|+....|..=+.++....+|++|.+.|++.++
T Consensus 380 ~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 380 HYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777764 3345677777777777888888888888888888887777777778888888888888888777544
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.95 E-value=7.1e-07 Score=91.40 Aligned_cols=283 Identities=12% Similarity=0.040 Sum_probs=173.1
Q ss_pred HHHHhcCCHHHHHHHhccCCC--CC-cchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhc------
Q 041741 346 VACVRSGDIKTGREMFDSMPS--PS-VSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAA------ 416 (748)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~------ 416 (748)
..+...|++++|++.+..-.. .| ..........+.+.|+.++|..++..+..+ .|+...|...+..+..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 445667777777777766543 33 333445566777777777777777777776 4666665555544431
Q ss_pred cCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCc-hHHHHHHHH
Q 041741 417 MGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLD-IEAFMFFKQ 495 (748)
Q Consensus 417 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~ 495 (748)
..+.+...++++.+...-+..+ ....+.-.+.....+ ..+...+..
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~---------------------------------~~~rl~L~~~~g~~F~~~~~~yl~~ 136 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSD---------------------------------APRRLPLDFLEGDEFKERLDEYLRP 136 (517)
T ss_pred cccHHHHHHHHHHHHHhCcccc---------------------------------chhHhhcccCCHHHHHHHHHHHHHH
Confidence 1123333344443333221111 000011011111111 234455566
Q ss_pred HHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHh----C----------CCCch--HHHHHHHHHHHhcCCHHHH
Q 041741 496 MRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKD----G----------YVNDI--FVGSALIEMYCKCGDIYGA 559 (748)
Q Consensus 496 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A 559 (748)
+..+|+++ +|..|-..|.......-...++...... + -+|+. .++..+.+.|...|++++|
T Consensus 137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 67777655 3444444444444444444444444322 1 13343 3446667888899999999
Q ss_pred HHHhhhcCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhh
Q 041741 560 RQFFDMMHG--KN-TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDH 636 (748)
Q Consensus 560 ~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 636 (748)
.++++.... |. +..|..-.+.+-+.|++.+|.+.++...... .-|...-+-....+.+.|++++|..++.... ..
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft-r~ 291 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFT-RE 291 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc-CC
Confidence 999998764 43 5678888899999999999999999999964 4555666667778899999999999998884 33
Q ss_pred CCCCChhH--------HHHHHHHHHhcCChHHHHHHHhhC
Q 041741 637 GVEPILDH--------YTCMIDCLGRAGHFHEAEMLIDEM 668 (748)
Q Consensus 637 ~~~~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~ 668 (748)
+..|.... ....+.+|.+.|++..|++.|..+
T Consensus 292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 43443322 235688999999999999877655
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=1.7e-08 Score=95.88 Aligned_cols=246 Identities=13% Similarity=0.049 Sum_probs=130.3
Q ss_pred HHhcCChHHHHHHHhhCCCCCc----chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhH
Q 041741 449 YSKCQRNELAERVFHRIPELDI----VCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQG 524 (748)
Q Consensus 449 ~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 524 (748)
+.-.|++..++.-.+ ....+. ....-+.+++...|+.+.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344677777765444 222221 23344556777777765443 3333322 55555555555544443444444
Q ss_pred HHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 041741 525 RQVHAQIEKDGYV-NDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVK 603 (748)
Q Consensus 525 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 603 (748)
..-++........ .+.........++...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4333332222222 22222223334455677777777777665 45566666777777777777787777777763 3
Q ss_pred CCHHHHHHHHHHh----cCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHH
Q 041741 604 PDDITFVAILTAC----SHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIW 677 (748)
Q Consensus 604 p~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 677 (748)
.|. +...+..++ .-.+.+.+|..+|+++. + .+.+++.+.+.++.+....|++++|.+++++.. .+.++.++
T Consensus 162 eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~-~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELS-D-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHH-C-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHH-h-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 443 233333333 12235777777777763 2 234556666677777777777777777766653 23345566
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHhcCCC
Q 041741 678 EVLLSSCRLHANV-RLAKRAAEELFRLDPK 706 (748)
Q Consensus 678 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~ 706 (748)
-.++-.....|+. +.+.+.+.++...+|+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 5666555556655 5566666666666664
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.90 E-value=1.3e-06 Score=79.85 Aligned_cols=196 Identities=13% Similarity=0.077 Sum_probs=128.7
Q ss_pred HHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHHcCChh
Q 041741 512 LSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMH---GKNTVTWNEMIHGYAQNGYGD 588 (748)
Q Consensus 512 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 588 (748)
+..+...|+...+++....+.+.. +.+...+..-..+|...|++..|+.-++... ..+.....-+...+...|+.+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 344556678888888777777643 4477777778888888888888876666544 467777777777888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHH----HHHH---H------HHhcCCCChHHHHHHHHHhhhhhCCCCC-----hhHHHHHHH
Q 041741 589 EAVRLYKDMIASGVKPDDIT----FVAI---L------TACSHSGLVDVGVEIFNSMQLDHGVEPI-----LDHYTCMID 650 (748)
Q Consensus 589 ~a~~~~~~m~~~~~~p~~~~----~~~l---~------~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~ 650 (748)
.++...++-++ +.||... |..| . ......++|.++++..+... ...|. ...+..+-.
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl---k~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL---KNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hcCCcccceeeeeeheeee
Confidence 88888888777 4666632 2111 1 12244566666666666553 22333 233455666
Q ss_pred HHHhcCChHHHHHHHhhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHH
Q 041741 651 CLGRAGHFHEAEMLIDEMP-CKDD-PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSL 713 (748)
Q Consensus 651 ~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 713 (748)
++...|++-+|+....+.. ..|+ ..++..-..+|....+++.|++-|+++.+.+|+|..+-.-
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 6777777788887777765 4443 5555555666766677788888888888887766554333
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=2.2e-07 Score=88.44 Aligned_cols=221 Identities=9% Similarity=0.033 Sum_probs=140.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHhhcCCCCc
Q 041741 443 SGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSF-ATVLSSCAKLSSS 521 (748)
Q Consensus 443 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~ 521 (748)
..+.++|...|+.+.++.-+..-..|.......+...+...++-+.++.-+++.......++..++ ......+...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 344566666666665555544444444444444443333334445555555544433333333333 3333456778888
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCC-CHHHHHHHHHHHHH----cCChhHHHHHHHH
Q 041741 522 FQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGK-NTVTWNEMIHGYAQ----NGYGDEAVRLYKD 596 (748)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 596 (748)
+.|.+++... .+.......+.+|.+.++++.|.+.++.|.+- +-.+...++.++.. .+.+.+|..+|++
T Consensus 119 ~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 119 EEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 8888777542 45677778899999999999999999999862 22233334433332 3469999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCCh-HHHHHHHhhCC-CCCC
Q 041741 597 MIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHF-HEAEMLIDEMP-CKDD 673 (748)
Q Consensus 597 m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~-~~~~ 673 (748)
+.+. +.++..+++.+..++...|++++|.+++++.. ...| +.+++..++-+....|+. +.+.+++.++. ..|+
T Consensus 193 l~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al---~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 193 LSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL---EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC---CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 8775 67888999999999999999999999999874 2334 366777888888888887 66778888886 3444
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.88 E-value=8.8e-06 Score=85.26 Aligned_cols=561 Identities=13% Similarity=0.036 Sum_probs=269.0
Q ss_pred ChhHHHHHHHHHHhCCCCCC-cchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHH
Q 041741 100 LEEKALSVYNKMSNEGFVPT-HITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVF 178 (748)
Q Consensus 100 ~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 178 (748)
+...++..|-+..+. .|+ ...|..+-..|+...|...|.+.|+...+.+ ..+........+.|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 366676666665543 222 2245555555555556666666666655544 234455666666666666666666552
Q ss_pred hcCCCC-----CeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCCcchhcccccccccc
Q 041741 179 EEMSEP-----NEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSRN 253 (748)
Q Consensus 179 ~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (748)
-...+. -...|....-.+...++...|+.-|+...+.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~-------------------------------------- 591 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT-------------------------------------- 591 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------------------------------------
Confidence 222111 1112222333344445555555544444321
Q ss_pred cchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCCCCCcc-cHHHHH--HHHHhcCChhHHHHHHHHHH
Q 041741 254 VHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPERSVV-SWNVMI--AGYGQKYQSTKAIELLQRMK 330 (748)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~--~~~~~~~~~~~a~~~~~~m~ 330 (748)
-+-|...+..+..+|.++|++..|.++|.+...-++. .|...- ...+..|.+.++++.+....
T Consensus 592 --------------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 592 --------------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred --------------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1235566778889999999999999999777654443 233322 23456788888888887765
Q ss_pred hc------CCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC-----------CCcchHHHHHHHHHccCCHHHHHHHHH
Q 041741 331 SC------GFEPDEVTSINMLVACVRSGDIKTGREMFDSMPS-----------PSVSSWNAMLSSYSQSENHKEAIKLFR 393 (748)
Q Consensus 331 ~~------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~ll~~~~~~~~~~~a~~~~~ 393 (748)
.. +..--..++..+...+.-.|-...+.+.++.-.+ .+...|-.+- .|..+|-
T Consensus 658 ~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac~~f~ 727 (1238)
T KOG1127|consen 658 YAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DACYIFS 727 (1238)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHHHHHH
Confidence 42 1111222333333333333333333333332211 1111111111 1222222
Q ss_pred HHHHcCCCCCHhhHHHHHHHhhccCCh---H---HHHHHHHHHHhhcCCchhHHHHHHHHHHHh--------cCChHHHH
Q 041741 394 EMQFRGVKPDRTTLAIILSSCAAMGIL---E---SGKQVHAASLKTASHIDNYVASGLIGIYSK--------CQRNELAE 459 (748)
Q Consensus 394 ~m~~~g~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~a~ 459 (748)
... .. .|+......+..-.-..+.. + .+.+.+-.-.+. ..+...+..++..|.+ ..+...|.
T Consensus 728 q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai 803 (1238)
T KOG1127|consen 728 QEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINYLRYFLLLGETMKDACTAI 803 (1238)
T ss_pred Hhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHHHHHHHHcCCcchhHHHHH
Confidence 221 00 22222222222212222221 1 000111000000 0112222222222221 11223566
Q ss_pred HHHhhCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCC
Q 041741 460 RVFHRIPE---LDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGY 536 (748)
Q Consensus 460 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 536 (748)
..+....+ .+...||.|.-. ...|.+.-+..-|-+-.... +....+|..+.-.+....+++.|...|.......
T Consensus 804 ~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd- 880 (1238)
T KOG1127|consen 804 RCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD- 880 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-
Confidence 66665553 344456655444 44556655555554444332 3355677777777778888888888887766543
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHhhhcC-----C---CCHHHHHHHHHHHHHcCChhHHHHH----------HHHHH
Q 041741 537 VNDIFVGSALIEMYCKCGDIYGARQFFDMMH-----G---KNTVTWNEMIHGYAQNGYGDEAVRL----------YKDMI 598 (748)
Q Consensus 537 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~a~~~----------~~~m~ 598 (748)
+.+...|--........|+.-++..+|..-. + ++..-|.........+|+.++-+.. +++..
T Consensus 881 P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf 960 (1238)
T KOG1127|consen 881 PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF 960 (1238)
T ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH
Confidence 1122223222222334566666666655411 1 3333333333344455554443333 23333
Q ss_pred HcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHH----HHHHHHHhcCChHHHHHHHhhCCCCCCH
Q 041741 599 ASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYT----CMIDCLGRAGHFHEAEMLIDEMPCKDDP 674 (748)
Q Consensus 599 ~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 674 (748)
. |.+-+...|...+....+.+.+..|.++..++..-...+.+...|+ ..++.++..|.++.|...+.......+.
T Consensus 961 ~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdE 1039 (1238)
T KOG1127|consen 961 L-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDE 1039 (1238)
T ss_pred h-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHH
Confidence 3 2333445666666666677777777666665432112222222233 4556667777777776666554433333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---cchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 675 VIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS---APYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 675 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
.....-+.. .-.|+++++.+.|++++.+...+. .....++.+...+|..+.|...+-+-
T Consensus 1040 di~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1040 DIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred HHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHH
Confidence 333333333 234677778888888777643322 33444555555666666666654443
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=8.4e-08 Score=94.12 Aligned_cols=214 Identities=13% Similarity=0.051 Sum_probs=158.2
Q ss_pred CCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHH
Q 041741 517 KLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRL 593 (748)
Q Consensus 517 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 593 (748)
+.|++..|.-.|+...+.. |-+...|..|.......++-..|+..+.++.+ .|....-.|..+|...|.-..|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455666655565555543 33566666666666677777777777776664 3566677777788888887888888
Q ss_pred HHHHHHcCCCCCHHHHHHHH-----------HHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 041741 594 YKDMIASGVKPDDITFVAIL-----------TACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAE 662 (748)
Q Consensus 594 ~~~m~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 662 (748)
++.-+... |... .+. ..+.....+....++|-.+....+.++|.+....|+-.|.-.|.+++|.
T Consensus 376 L~~Wi~~~--p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 376 LDKWIRNK--PKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHhC--ccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 87766532 1111 111 1222233345556666666566676678888899999999999999999
Q ss_pred HHHhhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 663 MLIDEMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 663 ~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.-|+.+. .+| |...|+.|+..+....+.++|+..|.+++++.|.-.-+.+.||..|...|.+++|.++|=....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999885 444 7889999999999999999999999999999999999999999999999999999998876543
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=2.6e-07 Score=87.08 Aligned_cols=180 Identities=12% Similarity=0.029 Sum_probs=120.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC-H---HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH----H
Q 041741 539 DIFVGSALIEMYCKCGDIYGARQFFDMMHG--KN-T---VTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDI----T 608 (748)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ 608 (748)
.+..+..+...+...|++++|...|+++.. |+ . ..+..+..++...|++++|...++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 455666777778888888888888887653 32 2 35666777888888888888888888774 33221 3
Q ss_pred HHHHHHHhcCC--------CChHHHHHHHHHhhhhhCCCCChh-HHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHH
Q 041741 609 FVAILTACSHS--------GLVDVGVEIFNSMQLDHGVEPILD-HYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEV 679 (748)
Q Consensus 609 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 679 (748)
+..+..++... |++++|.+.++++... .|+.. ....+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 44555555443 6677778877777422 33321 1211111100 00000 011124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---cchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDPKNS---APYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
+...+...|++++|...++++++..|+++ .++..++.++...|++++|..+++.+..+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55668889999999999999999988654 689999999999999999999999887654
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=7.8e-06 Score=82.81 Aligned_cols=255 Identities=8% Similarity=-0.073 Sum_probs=156.0
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH---HHHhhcCCCCchhHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcC
Q 041741 479 GLSLNSLDIEAFMFFKQMRQNEMYPTQFSFAT---VLSSCAKLSSSFQGRQVHAQIEKDGYVN-DIFVGSALIEMYCKCG 554 (748)
Q Consensus 479 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 554 (748)
.+...|++++|.+.+++..... +.+...+.. ........+....+.+.+.. .....| .......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 4456778888888888877652 223333331 11111223444444444433 112222 3344455667788899
Q ss_pred CHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhcCCCChHHHHHH
Q 041741 555 DIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGV-KPDD--ITFVAILTACSHSGLVDVGVEI 628 (748)
Q Consensus 555 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~A~~~ 628 (748)
++++|.+.+++..+ .+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|+.+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999988764 3566778888889999999999999998887531 1222 2355677888899999999999
Q ss_pred HHHhhhhhCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-hhCC-CCCC---HhHHHHHHHHHHhcCCHHHHHHHHH
Q 041741 629 FNSMQLDHGVEPILDHY-T--CMIDCLGRAGHFHEAEML--I-DEMP-CKDD---PVIWEVLLSSCRLHANVRLAKRAAE 698 (748)
Q Consensus 629 ~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~-~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 698 (748)
+++........+..... . .+...+...|..+.+..+ + .... ..+. ..........+...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 98873221111221111 1 233334445543333333 1 1111 1111 1222245556778899999999998
Q ss_pred HHHhcCCC---------CCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 699 ELFRLDPK---------NSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 699 ~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.+....-. ........+.+++..|++++|.+.+.....
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 87664321 345678888999999999999999998765
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=4e-07 Score=81.72 Aligned_cols=119 Identities=6% Similarity=0.042 Sum_probs=89.5
Q ss_pred CCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHH-HHhcCC--HHHH
Q 041741 619 SGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSS-CRLHAN--VRLA 693 (748)
Q Consensus 619 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~~~--~~~a 693 (748)
.++.++++..+++... ..+.+...|..++..|...|++++|...+++.. .+.++..+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566677766666532 223446778888888888888888888888774 33466777777775 356666 5888
Q ss_pred HHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 694 KRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 694 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
.+.++++++.+|+++.++..++..+...|++++|+.+|+++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8888888888888888888888888888888888888888876544
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=4.1e-07 Score=81.37 Aligned_cols=199 Identities=10% Similarity=-0.004 Sum_probs=161.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHhcC
Q 041741 543 GSALIEMYCKCGDIYGARQFFDMMHG--K-NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVA-ILTACSH 618 (748)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~ 618 (748)
+++.+..+.+..++.+|.+++..-.+ | +....+.|..+|....++..|-..++++... .|...-|.. -.+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 45666667788899999998876554 2 5667888899999999999999999999884 677766553 3456778
Q ss_pred CCChHHHHHHHHHhhhhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 041741 619 SGLVDVGVEIFNSMQLDHGVEPI--LDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRA 696 (748)
Q Consensus 619 ~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 696 (748)
.+.+.+|+.+...|. + .|. ......-..+....+++..+..++++.+...+.++.....-...+.|+++.|.+-
T Consensus 91 A~i~ADALrV~~~~~-D---~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLL-D---NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhc-C---CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 889999999988873 2 233 2223333445667899999999999998777888877777777889999999999
Q ss_pred HHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCC
Q 041741 697 AEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCIVKDPAYSL 747 (748)
Q Consensus 697 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 747 (748)
++.+++...=+|..-+.++-++++.|+++.|+++..++.++|++..|.+.-
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 999999988888999999999999999999999999999999999997653
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.71 E-value=1.7e-07 Score=79.47 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCC-
Q 041741 592 RLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLIDEMP- 669 (748)
Q Consensus 592 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 669 (748)
.++++..+ +.|+. +..+..++...|++++|...|+.+. ...| +...+..++.++.+.|++++|...|++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444 23432 3334445555556666655555553 2223 24445555555555555555555555553
Q ss_pred -CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHH
Q 041741 670 -CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIY 718 (748)
Q Consensus 670 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 718 (748)
.+.++..+..++.++...|++++|...++++++..|+++..+..++.+.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 2334555555555555555555556666555555555555555555444
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=2.3e-07 Score=78.63 Aligned_cols=108 Identities=11% Similarity=-0.001 Sum_probs=90.8
Q ss_pred HHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041741 627 EIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLD 704 (748)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 704 (748)
.++++.. .+.|+ .+..++..+...|++++|...++... .+.+...+..++..+...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4444443 34454 35567888999999999999999885 34478888999999999999999999999999999
Q ss_pred CCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 705 PKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 705 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
|+++.++..++.++...|+.++|...|+...+..+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999998766443
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.8e-05 Score=74.13 Aligned_cols=425 Identities=12% Similarity=0.014 Sum_probs=253.2
Q ss_pred HHHHhcCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHH
Q 041741 280 DMYAKNGDMDSAEVIFSNLPE---RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPD-EVTSINMLVACVRSGDIK 355 (748)
Q Consensus 280 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~ 355 (748)
.+.+..|+++.|..+|..... +|.+.|.--..+|+..|++++|++=-.+-.+. .|+ ..-|.-.-.++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 456788999999999987543 56778889999999999999999877666654 444 356888888999999999
Q ss_pred HHHHHhccCCC---CCcchHHHHHHHHHccCCHHHH-HHHHHH--HHHcCCCCCH--------hhHHHHHHHhhccCChH
Q 041741 356 TGREMFDSMPS---PSVSSWNAMLSSYSQSENHKEA-IKLFRE--MQFRGVKPDR--------TTLAIILSSCAAMGILE 421 (748)
Q Consensus 356 ~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a-~~~~~~--m~~~g~~p~~--------~~~~~ll~~~~~~~~~~ 421 (748)
+|+..|.+-.+ .|...++-+..++ ..+.+ .+.|.. |. .++.-++ ..|..++....+...
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~-~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~-- 160 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFH-EKLANLPLTNYSLSDPAYVKILEIIQKNPT-- 160 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHH-HHhhcChhhhhhhccHHHHHHHHHhhcCcH--
Confidence 99999998875 3445566666666 11111 111110 00 0111111 122222222111100
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHH---------hhCCC--CC-------------cchHHHHH
Q 041741 422 SGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVF---------HRIPE--LD-------------IVCWNSMI 477 (748)
Q Consensus 422 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~---------~~~~~--~~-------------~~~~~~li 477 (748)
-+..... ++.+...+.......-....+.... ....+ +. ..-...+.
T Consensus 161 --------~l~~~l~-d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lg 231 (539)
T KOG0548|consen 161 --------SLKLYLN-DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELG 231 (539)
T ss_pred --------hhhcccc-cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHH
Confidence 0000000 1111111110000000000000000 00000 00 01234466
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCc------hHHHHHHHHHHH
Q 041741 478 AGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVND------IFVGSALIEMYC 551 (748)
Q Consensus 478 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~ 551 (748)
+..-+..++..|++.+....... -+..-++..-.++...|.+......-....+.|...- ...+..+..+|.
T Consensus 232 naaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 67777788888888888887653 3333445555667777777776666655555443221 111222344677
Q ss_pred hcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCChHHHHHHHH
Q 041741 552 KCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDI-TFVAILTACSHSGLVDVGVEIFN 630 (748)
Q Consensus 552 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~ 630 (748)
+.++++.|...|.+...+... -....+....++++...+...- +.|... -...-...+.+.|++..|+..|.
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 788899999999875532111 1122233445666666665554 344442 22333667789999999999999
Q ss_pred HhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 041741 631 SMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS 708 (748)
Q Consensus 631 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 708 (748)
+++... +-|...|..-+-+|.+.|.+..|++=.+... .++....|..-+.++....++++|.+.|+++++.+|++.
T Consensus 383 eAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 383 EAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 985332 4457789999999999999999998776664 233345555555567777899999999999999999999
Q ss_pred cchHHHhHHHhhcCChHHHHHHHHH
Q 041741 709 APYSLLANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (748)
.+...+.++.......+...++++.
T Consensus 461 e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 461 EAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9888888888775555555555554
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.66 E-value=9.2e-05 Score=68.21 Aligned_cols=300 Identities=9% Similarity=0.022 Sum_probs=182.0
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCCcchHHHHH---HHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHH-HHHhhccCC
Q 041741 344 MLVACVRSGDIKTGREMFDSMPSPSVSSWNAML---SSYSQSENHKEAIKLFREMQFRGVKPDRTTLAII-LSSCAAMGI 419 (748)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~ 419 (748)
+-..+...|++.+|+.-|....+.|+..|.++. ..|...|...-|+.-+....+. +||-..-..- -..+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 344555566666666666666666665555543 3556666666666666555543 5553322111 122345555
Q ss_pred hHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 041741 420 LESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQN 499 (748)
Q Consensus 420 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 499 (748)
++.|..-|..++++.++.... ..++.+..-.++-. .....+..+...|+...|+.....+.+.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~-----~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLV-----LEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchh-----HHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 555555555555544322110 00011000000000 1122344455677777888877777754
Q ss_pred CCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCHH----H
Q 041741 500 EMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--KNTV----T 573 (748)
Q Consensus 500 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~ 573 (748)
. +-+...+..-..+|...|++..|+.=+....+.... ++..+.-+-..+...|+.+.++...+++.+ ||.. .
T Consensus 185 ~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 185 Q-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred C-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 2 335666666677778888888887777766665433 344445566777788888888888887765 3321 1
Q ss_pred HHHH---------HHHHHHcCChhHHHHHHHHHHHcCCCCCH--H---HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCC
Q 041741 574 WNEM---------IHGYAQNGYGDEAVRLYKDMIASGVKPDD--I---TFVAILTACSHSGLVDVGVEIFNSMQLDHGVE 639 (748)
Q Consensus 574 ~~~l---------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 639 (748)
|..+ +......++|.++++..+...+. .|.. . .+..+..++...|++.+|+....+.. .+.
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d 337 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DID 337 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcC
Confidence 2111 22345678888898888888875 4442 2 34455666778899999999998875 667
Q ss_pred CC-hhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 640 PI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 640 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
|+ +.++-.-+++|.-..++++|+.-|+...
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 76 8888888999999999999999998875
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=1.9e-05 Score=91.03 Aligned_cols=257 Identities=12% Similarity=-0.012 Sum_probs=125.6
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHhhcCCCCchhHHHHHHHHHHh----CCC-CchHHHHHHHHHH
Q 041741 480 LSLNSLDIEAFMFFKQMRQNEMYPTQ----FSFATVLSSCAKLSSSFQGRQVHAQIEKD----GYV-NDIFVGSALIEMY 550 (748)
Q Consensus 480 ~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~ 550 (748)
+...|++++|...+++....-...+. .....+...+...|+++.|...+...... |.. ........+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 34566666666666655442111111 12233344455566666666666555432 110 0122334445555
Q ss_pred HhcCCHHHHHHHhhhcCC-------C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCC--HHHHHHHHHH
Q 041741 551 CKCGDIYGARQFFDMMHG-------K----NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASG--VKPD--DITFVAILTA 615 (748)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~--~~~~~~l~~~ 615 (748)
...|+++.|...+++... + ....+..+...+...|++++|...+++..... ..+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 666676666666554321 0 11223344455555677777766666654421 1111 1233344455
Q ss_pred hcCCCChHHHHHHHHHhhhhhCCCCChhHH-----HHHHHHHHhcCChHHHHHHHhhCCCC--CCHh----HHHHHHHHH
Q 041741 616 CSHSGLVDVGVEIFNSMQLDHGVEPILDHY-----TCMIDCLGRAGHFHEAEMLIDEMPCK--DDPV----IWEVLLSSC 684 (748)
Q Consensus 616 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~l~~~~ 684 (748)
+...|+++.|...+++.............+ ......+...|+.+.|..++...... .... .+..+...+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 566677777766666653211111100000 01123334466677777666555311 1111 123344455
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC------CCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 685 RLHANVRLAKRAAEELFRLDPK------NSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 685 ~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
...|++++|...+++++..... ...++..++.++...|+.++|...++++.+
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6667777777777776664211 123456666777777777777777666654
No 108
>PLN02789 farnesyltranstransferase
Probab=98.57 E-value=2e-05 Score=76.28 Aligned_cols=212 Identities=10% Similarity=0.007 Sum_probs=132.0
Q ss_pred CchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC-CHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCCh--hHHHHH
Q 041741 520 SSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCG-DIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYG--DEAVRL 593 (748)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~a~~~ 593 (748)
..++|..+...+.+.. +-+..+|+....++.+.| ++++++..++.+.+ ++..+|+.....+.+.|+. ++++..
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3444444444444332 112233333334444445 46777777766553 3445566555555555542 567777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHh
Q 041741 594 YKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRA---GHF----HEAEMLID 666 (748)
Q Consensus 594 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~ 666 (748)
++++++.. +-|...|.....++...|+++++++.++++... . .-+...|.....++.+. |.. +++..+..
T Consensus 131 ~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 87887753 345567777777777778888888888887522 1 22244455555554443 222 45666664
Q ss_pred hC-C-CCCCHhHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcC------------------
Q 041741 667 EM-P-CKDDPVIWEVLLSSCRLH----ANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLG------------------ 722 (748)
Q Consensus 667 ~~-~-~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------ 722 (748)
++ . .+.+...|..+...+... +...+|...+.+++..+|+++.++..|+.+|....
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 44 3 344677888888777663 34566889999999999999999999999998643
Q ss_pred ChHHHHHHHHHHH
Q 041741 723 RWDDLRAVRELMS 735 (748)
Q Consensus 723 ~~~~A~~~~~~~~ 735 (748)
..++|.++++.+.
T Consensus 288 ~~~~a~~~~~~l~ 300 (320)
T PLN02789 288 DSTLAQAVCSELE 300 (320)
T ss_pred cHHHHHHHHHHHH
Confidence 3467888888874
No 109
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.56 E-value=6.5e-07 Score=73.92 Aligned_cols=96 Identities=13% Similarity=-0.039 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHh
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYS 719 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 719 (748)
....-.++..+...|++++|.++|+-+. .+-+...|..|..++...|++++|+..|..+..++|+||.++.+++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4445567778889999999999999885 34468899999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 041741 720 SLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 720 ~~g~~~~A~~~~~~~~~~ 737 (748)
..|+.+.|++.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987663
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.55 E-value=7.2e-06 Score=87.62 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHH
Q 041741 602 VKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWE 678 (748)
Q Consensus 602 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 678 (748)
++.+...+..|.......|.+++|..+++.+. .+.|+ ......++.++.+.+++++|...+++.. ..| ++....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 45556677777777788888888888888774 45666 4556677778888888888888887775 444 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 679 VLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 679 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.+...+...|++++|..+|++++..+|+++.++..++.++...|+.++|...|+....
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666777888888888888888887787788888888888888888888888887654
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=6.8e-06 Score=89.10 Aligned_cols=199 Identities=13% Similarity=0.086 Sum_probs=141.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 041741 537 VNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--------KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDIT 608 (748)
Q Consensus 537 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 608 (748)
|.+...|-..|..+...++.++|++++++... .-...|-++++.-...|.-+...++|+++.+- --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 33555666677777777888888888777653 12346777777777777777777888887773 222345
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCC---HhHHHHHHHHH
Q 041741 609 FVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDD---PVIWEVLLSSC 684 (748)
Q Consensus 609 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~ 684 (748)
|..|...|.+.+++++|.++++.|.+.++ .....|..+++.+.+..+-+.|..++++.. .-|. ...+...+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77777788888888888888888876666 455667778888888887777877777663 2232 34445555556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 685 RLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 685 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
.+.||.+++..+++..+...|+....|...+..-.+.|+.+.++.+|+++...++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 6778888888888888888888888888888888888888888888887766544
No 112
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=6.9e-06 Score=72.27 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHH---HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC
Q 041741 544 SALIEMYCKCGDIYGARQFFDMMHGKNTVTWN---EMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSG 620 (748)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 620 (748)
..++-+....|+.+.|...++.+...-+.++. .-...+-..|++++|+++++.+++.+ +-|..++..=+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 34444444555555555555554431111111 11122333455555555555555543 333344444444444444
Q ss_pred ChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcC---CHHHHHH
Q 041741 621 LVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHA---NVRLAKR 695 (748)
Q Consensus 621 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~---~~~~a~~ 695 (748)
+.-+|++-+..... .+..|.+.|..+.+.|...|++++|.--++++. ..| ++..+..+...+...| +.+.|..
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44455554444422 234445555555555555555555555555553 233 3444444444433222 4455555
Q ss_pred HHHHHHhcCCCCCcchH
Q 041741 696 AAEELFRLDPKNSAPYS 712 (748)
Q Consensus 696 ~~~~~~~~~p~~~~~~~ 712 (748)
.|.+++++.|.+...+.
T Consensus 213 yy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHhChHhHHHHH
Confidence 55555555554433333
No 113
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.51 E-value=1.5e-05 Score=80.77 Aligned_cols=92 Identities=12% Similarity=0.026 Sum_probs=44.6
Q ss_pred HHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CC---CCH--hHHHHHHHH
Q 041741 611 AILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CK---DDP--VIWEVLLSS 683 (748)
Q Consensus 611 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---~~~--~~~~~l~~~ 683 (748)
.+...+...|++++|...+++... ..|+ ...+..++.++...|++++|...+++.. .. |+. ..+..+...
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~---~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALE---LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 344445555555555555555531 2222 3344455555555555555555555543 11 111 122334444
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC
Q 041741 684 CRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 684 ~~~~~~~~~a~~~~~~~~~~~p 705 (748)
+...|++++|...++++....|
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHCCCHHHHHHHHHHHhcccc
Confidence 5555555555555555544444
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=1.2e-05 Score=72.26 Aligned_cols=154 Identities=11% Similarity=0.112 Sum_probs=117.4
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 041741 547 IEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGV 626 (748)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 626 (748)
+..|.+.|+++.+....+.+..+. . .+...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456788888888765554333221 0 1112566788888888888864 667788999999999999999999
Q ss_pred HHHHHhhhhhCCCCC-hhHHHHHHHHH-HhcCC--hHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041741 627 EIFNSMQLDHGVEPI-LDHYTCMIDCL-GRAGH--FHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEEL 700 (748)
Q Consensus 627 ~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 700 (748)
..+++.. .+.|+ ...+..++.++ ...|+ .++|.+++++.. .+.++..+..+...+...|++++|...++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999885 34454 66777888875 67777 599999999986 3446788888888899999999999999999
Q ss_pred HhcCCCCCcchH
Q 041741 701 FRLDPKNSAPYS 712 (748)
Q Consensus 701 ~~~~p~~~~~~~ 712 (748)
++..|.+..-..
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987765543
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.47 E-value=1.7e-06 Score=73.21 Aligned_cols=93 Identities=22% Similarity=0.248 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc
Q 041741 644 HYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSL 721 (748)
Q Consensus 644 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 721 (748)
....++..+...|++++|...++.+. .+.++..+..+...+...|++++|...+++++..+|+++..+..++.+|...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 34455566666666666666666653 2335566666666666666677777777776666676666677777777777
Q ss_pred CChHHHHHHHHHHHh
Q 041741 722 GRWDDLRAVRELMSE 736 (748)
Q Consensus 722 g~~~~A~~~~~~~~~ 736 (748)
|++++|...++...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777776666544
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=2.4e-05 Score=77.39 Aligned_cols=243 Identities=14% Similarity=0.108 Sum_probs=130.8
Q ss_pred ccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc---hHHHHHHHHHhCCCchHHHHH
Q 041741 416 AMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIV---CWNSMIAGLSLNSLDIEAFMF 492 (748)
Q Consensus 416 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~ 492 (748)
+.|++..|.-.++..++..+. +...|..|.......++-..|+..+++..+.|+. ..-.|.-+|...|.-..|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 445555555555555554433 4555555666666666666666666666554443 333344455566666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcC-----
Q 041741 493 FKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMH----- 567 (748)
Q Consensus 493 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----- 567 (748)
++.-+... |. |..+..+- ..+++... +-.++...+. ...++|-++.
T Consensus 376 L~~Wi~~~--p~---y~~l~~a~-~~~~~~~~----------~s~~~~~~l~-------------~i~~~fLeaa~~~~~ 426 (579)
T KOG1125|consen 376 LDKWIRNK--PK---YVHLVSAG-ENEDFENT----------KSFLDSSHLA-------------HIQELFLEAARQLPT 426 (579)
T ss_pred HHHHHHhC--cc---chhccccC-ccccccCC----------cCCCCHHHHH-------------HHHHHHHHHHHhCCC
Confidence 66654432 10 00000000 00000000 0011222211 2222222221
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHH
Q 041741 568 GKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHY 645 (748)
Q Consensus 568 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~ 645 (748)
+.|+.....|.-.|-..|++++|+..|+.++.. +|+. ..||.|...++...+.++|+..|+++. .++|. +...
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~R 501 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVR 501 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeee
Confidence 246666677777777777788888888877773 4544 567888877777777888888877764 56676 5555
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCC------------CCCCHhHHHHHHHHHHhcCCHHHH
Q 041741 646 TCMIDCLGRAGHFHEAEMLIDEMP------------CKDDPVIWEVLLSSCRLHANVRLA 693 (748)
Q Consensus 646 ~~l~~~~~~~g~~~~A~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a 693 (748)
..|+-.|...|.+++|.+.|-+.. ..++..+|..|-.++...++.+.+
T Consensus 502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 502 YNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 667777777788877777654331 011234666666556556655533
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=1.3e-05 Score=71.44 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHH
Q 041741 570 NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMI 649 (748)
Q Consensus 570 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 649 (748)
|... ..+...+...|+-+....+....... .+-|.......+......|++..|+..+++.. ..-++|...++.++
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCChhhhhHHH
Confidence 3344 55667788888888888888876653 23444556668888899999999999999884 24466788899999
Q ss_pred HHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHH
Q 041741 650 DCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDL 727 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 727 (748)
-+|.+.|++++|..-|.+.. .+.++...+.+...+.-.||.+.|..++..+....|.|+.+...|+.+-...|+.++|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 99999999999998887774 4557888899999999999999999999999888888999999999999999999999
Q ss_pred HHHHHH
Q 041741 728 RAVREL 733 (748)
Q Consensus 728 ~~~~~~ 733 (748)
..+-..
T Consensus 222 ~~i~~~ 227 (257)
T COG5010 222 EDIAVQ 227 (257)
T ss_pred Hhhccc
Confidence 887554
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.45 E-value=0.00044 Score=79.98 Aligned_cols=359 Identities=9% Similarity=-0.065 Sum_probs=211.4
Q ss_pred HHhcCCHHHHHHHhccCCCCCcch--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHH
Q 041741 348 CVRSGDIKTGREMFDSMPSPSVSS--WNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQ 425 (748)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 425 (748)
+...|++..|.............. ...........|+++.+..+++.+.......++.........+...|+++.+..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 444555555555444433221111 111223344566777666666554221111222222233344456678888877
Q ss_pred HHHHHHhhcCC------c--hhHHHHHHHHHHHhcCChHHHHHHHhhCCC----CCc----chHHHHHHHHHhCCCchHH
Q 041741 426 VHAASLKTASH------I--DNYVASGLIGIYSKCQRNELAERVFHRIPE----LDI----VCWNSMIAGLSLNSLDIEA 489 (748)
Q Consensus 426 ~~~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a 489 (748)
.+......-.. + .......+...+...|+++.|...+++... .+. ...+.+...+...|++++|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77766443111 1 112222334556678888888888776542 111 1334555667789999999
Q ss_pred HHHHHHHHHCCC---CC--CHHHHHHHHHhhcCCCCchhHHHHHHHHHHh----CCC--C-chHHHHHHHHHHHhcCCHH
Q 041741 490 FMFFKQMRQNEM---YP--TQFSFATVLSSCAKLSSSFQGRQVHAQIEKD----GYV--N-DIFVGSALIEMYCKCGDIY 557 (748)
Q Consensus 490 ~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~ 557 (748)
...+.+...... .+ ...++..+...+...|+++.|...+.+.... +.. + ....+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 988888764211 11 1234455566778899999999988876553 221 1 2233445566677789999
Q ss_pred HHHHHhhhcCC------C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCCHH--H-H-HHHHHHhcCCCChH
Q 041741 558 GARQFFDMMHG------K--NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASG--VKPDDI--T-F-VAILTACSHSGLVD 623 (748)
Q Consensus 558 ~A~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~--~-~-~~l~~~~~~~~~~~ 623 (748)
+|...+.+... + ....+..+...+...|+++.|...++++.... ...... . . ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 99988887542 1 23345556678888999999999998876521 111110 1 1 11223345578999
Q ss_pred HHHHHHHHhhhhhCCCCChh----HHHHHHHHHHhcCChHHHHHHHhhCC-----C--CCC-HhHHHHHHHHHHhcCCHH
Q 041741 624 VGVEIFNSMQLDHGVEPILD----HYTCMIDCLGRAGHFHEAEMLIDEMP-----C--KDD-PVIWEVLLSSCRLHANVR 691 (748)
Q Consensus 624 ~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~-----~--~~~-~~~~~~l~~~~~~~~~~~ 691 (748)
.|...+.... ... ..... .+..++.++...|++++|...+++.. . ..+ ......+...+...|+.+
T Consensus 671 ~A~~~l~~~~-~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~ 748 (903)
T PRK04841 671 AAANWLRQAP-KPE-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKS 748 (903)
T ss_pred HHHHHHHhcC-CCC-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999987763 211 11111 13467888899999999999988763 1 111 234455566788999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 041741 692 LAKRAAEELFRLDPKNS 708 (748)
Q Consensus 692 ~a~~~~~~~~~~~p~~~ 708 (748)
+|...+.+++++.....
T Consensus 749 ~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 749 EAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHHHhCccc
Confidence 99999999999865443
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=2.4e-05 Score=69.68 Aligned_cols=154 Identities=16% Similarity=0.050 Sum_probs=124.0
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC
Q 041741 544 SALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSG 620 (748)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 620 (748)
..+-..+...|+-+....+...... .|......++....+.|++..|+..+.+..... ++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 5556667777887777777766442 456667778999999999999999999999864 778889999999999999
Q ss_pred ChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 041741 621 LVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAE 698 (748)
Q Consensus 621 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 698 (748)
+.+.|..-|.+..+-.+-. ...++.++-.|.-.|+++.|..++.... .++ +..+...+..+....|+++.|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999998885333333 3457788888999999999999998875 333 77888888888899999999998887
Q ss_pred HH
Q 041741 699 EL 700 (748)
Q Consensus 699 ~~ 700 (748)
+-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 63
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.43 E-value=3e-07 Score=54.61 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=23.9
Q ss_pred CCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCC
Q 041741 150 GLDKNIYVANALLSLYAKCGWTKHAVPVFEEMS 182 (748)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 182 (748)
|+.||..+|+.||++|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00021 Score=63.75 Aligned_cols=155 Identities=18% Similarity=0.163 Sum_probs=99.4
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc----CCCCh
Q 041741 547 IEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACS----HSGLV 622 (748)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~~~~ 622 (748)
...|++.|++++|.+...... +....-.=...+.+..+.+-|...+++|.+ -.+..|.+.|..++. ..+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhh
Confidence 345667777777777776622 233333334455666677778888888877 245556666666653 33457
Q ss_pred HHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcC-CHHHHHHHHHH
Q 041741 623 DVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHA-NVRLAKRAAEE 699 (748)
Q Consensus 623 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~ 699 (748)
.+|.-+|++|. . +..|+..+.+..+-++...|++++|..+++... ...+|.++-.++-.....| +.+-..+.+.+
T Consensus 190 qdAfyifeE~s-~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELS-E-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHh-c-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 77888888873 2 356777777777777777888888888877774 3346666666666555555 44555666777
Q ss_pred HHhcCCCCC
Q 041741 700 LFRLDPKNS 708 (748)
Q Consensus 700 ~~~~~p~~~ 708 (748)
+....|+.+
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 776777543
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=1.9e-07 Score=55.48 Aligned_cols=34 Identities=35% Similarity=0.466 Sum_probs=26.0
Q ss_pred hCCCCCcchhhHHHHHHHccCCchhhhhhhhcCC
Q 041741 17 NGLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMP 50 (748)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 50 (748)
+|+.||..+||+||.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3777788888888888888877777777777763
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.40 E-value=8.2e-05 Score=81.14 Aligned_cols=232 Identities=11% Similarity=0.136 Sum_probs=177.0
Q ss_pred CHHHHHHHHHhhcCCCCchhHHHHHHHHHHh-CCCCc---hHHHHHHHHHHHhcCCHHHHHHHhhhcCC-CC-HHHHHHH
Q 041741 504 TQFSFATVLSSCAKLSSSFQGRQVHAQIEKD-GYVND---IFVGSALIEMYCKCGDIYGARQFFDMMHG-KN-TVTWNEM 577 (748)
Q Consensus 504 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~l 577 (748)
+...|...+.-....++.+.|+++.+++... ++.-. ..+|.++++.-..-|.-+...++|+++.+ .| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3445666777778889999999999888765 33322 34667777777777888888999998886 34 4568889
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCC
Q 041741 578 IHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGH 657 (748)
Q Consensus 578 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 657 (748)
...|.+.+.+++|-++++.|.+. +.-....|...+..+.+..+-++|.+++.++.+...-+-.+......+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999987 56666789999999999999999999999886333222235666677888889999
Q ss_pred hHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCcchHH-HhHHHhhcCChHHHHHHHH
Q 041741 658 FHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLD--PKNSAPYSL-LANIYSSLGRWDDLRAVRE 732 (748)
Q Consensus 658 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~-l~~~~~~~g~~~~A~~~~~ 732 (748)
.+.+..+|+... .+...+.|+.++..-.++|+.+.+..+|++++.+. |.....++- +...-...||-+.++.+-.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKa 1695 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKA 1695 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 999999999886 44578999999999999999999999999999964 555544333 3333344477665555544
Q ss_pred HHHh
Q 041741 733 LMSE 736 (748)
Q Consensus 733 ~~~~ 736 (748)
++.+
T Consensus 1696 rA~E 1699 (1710)
T KOG1070|consen 1696 RAKE 1699 (1710)
T ss_pred HHHH
Confidence 4443
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=1.4e-05 Score=81.13 Aligned_cols=232 Identities=12% Similarity=0.050 Sum_probs=170.3
Q ss_pred cCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041741 434 ASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLS 513 (748)
Q Consensus 434 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 513 (748)
+.+|-...-..+...+...|-...|..+|+++ ..|...|.+|+..|+..+|..+..+..++ +|+...|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34555566677888888999999999998875 45777888999999999999998888863 788888888877
Q ss_pred hhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHH
Q 041741 514 SCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEA 590 (748)
Q Consensus 514 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 590 (748)
......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ -...+|-.+..+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 777776777777777654332 122222333446888888888886543 2456788888888888899999
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 591 VRLYKDMIASGVKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 591 ~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
.+.|..-... .||. ..|+.+-.+|.+.|+-.+|...+.+.. +.. ..+...|...+....+.|.+++|.+.+.++.
T Consensus 539 v~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl-Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 539 VKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL-KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh-hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999888873 5655 579999999999999999998888884 434 3444556777777888899999998888774
Q ss_pred ----CCCCHhHHHHHHHH
Q 041741 670 ----CKDDPVIWEVLLSS 683 (748)
Q Consensus 670 ----~~~~~~~~~~l~~~ 683 (748)
...++.+...++..
T Consensus 615 ~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 615 DLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HhhhhcccchhhHHHHHH
Confidence 22355555444444
No 125
>PLN02789 farnesyltranstransferase
Probab=98.39 E-value=1.6e-05 Score=76.82 Aligned_cols=188 Identities=9% Similarity=0.067 Sum_probs=139.4
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCC--C-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCC
Q 041741 546 LIEMYCKCGDIYGARQFFDMMHG--K-NTVTWNEMIHGYAQNG-YGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGL 621 (748)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 621 (748)
+-..+...++.++|+...+++.+ | +...|+....++...| ++++++..++++.+.+ +-+..+|+.....+.+.|+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 33445556788999999988775 3 4456766666777777 6799999999999864 3444567766656656665
Q ss_pred --hHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhc---CC----
Q 041741 622 --VDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLH---AN---- 689 (748)
Q Consensus 622 --~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~---- 689 (748)
.++++.+++++. ...| +...|.....++.+.|++++|++.++++. ...+...|+.....+... |.
T Consensus 122 ~~~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 367788888774 3344 47778888899999999999999999985 344667777776665443 22
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHhHHHhh----cCChHHHHHHHHHHHhc
Q 041741 690 VRLAKRAAEELFRLDPKNSAPYSLLANIYSS----LGRWDDLRAVRELMSEN 737 (748)
Q Consensus 690 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 737 (748)
.+.......+++..+|+|..++..++.++.. .++..+|.+...+....
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 3578888899999999999999999999988 35567788887775543
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.37 E-value=2.1e-05 Score=74.16 Aligned_cols=183 Identities=13% Similarity=-0.025 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCC-C-chHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC-HH---H
Q 041741 502 YPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYV-N-DIFVGSALIEMYCKCGDIYGARQFFDMMHG--KN-TV---T 573 (748)
Q Consensus 502 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~ 573 (748)
......+..+...+...|+++.|...++.+...... | ....+..+..++.+.|++++|...++.+.+ |+ .. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345567778888899999999999999998876432 1 234667788999999999999999998864 32 22 4
Q ss_pred HHHHHHHHHHc--------CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhH
Q 041741 574 WNEMIHGYAQN--------GYGDEAVRLYKDMIASGVKPDDI-TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDH 644 (748)
Q Consensus 574 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 644 (748)
+..+..++... |++++|.+.++++... .|+.. .+..+..... . .... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH-H--------HH
Confidence 55666666654 7789999999999985 45442 2222211100 0 0000 0 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC-CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMP-CKD----DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
...++..+.+.|++++|...+++.. ..| .+..+..++..+...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2356778889999999999888874 222 356778888889999999999998888776665
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=2.2e-05 Score=79.80 Aligned_cols=185 Identities=9% Similarity=-0.027 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC
Q 041741 543 GSALIEMYCKCGDIYGARQFFDMMH--GKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSG 620 (748)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 620 (748)
+..++.+|...|+..+|..+..+.. .|++..|..+++......-+++|.++.+..... .-..+.......+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccch
Confidence 4445555555555555555544332 234444444444443333344444444332211 1111112223345
Q ss_pred ChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 041741 621 LVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAE 698 (748)
Q Consensus 621 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 698 (748)
+++++...|+.-.... +....+|-.++-+..+.++++.|.+.|.... ..| ....|+.+..++.+.++-.+|...++
T Consensus 500 ~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 500 DFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred hHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 5555555555432111 1123445555556666666666666665554 333 34566666666666666666666666
Q ss_pred HHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 699 ELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 699 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
++++-+-++..++..-..+..+-|.|++|.+.++++..
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 66666655666666666666666666666666666654
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00013 Score=64.42 Aligned_cols=182 Identities=10% Similarity=0.103 Sum_probs=94.8
Q ss_pred CCCchHHHHHHHHHHH---CC-CCCCHHH-HHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHH
Q 041741 483 NSLDIEAFMFFKQMRQ---NE-MYPTQFS-FATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIY 557 (748)
Q Consensus 483 ~~~~~~a~~~~~~m~~---~~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 557 (748)
..+.++.++++.++.. .| ..|+..+ |-.++-+....|..+.|...++.+...- +-+..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3445666666666644 23 3344433 2334444445555666666666555443 333333333333344556666
Q ss_pred HHHHHhhhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhh
Q 041741 558 GARQFFDMMHGK---NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQL 634 (748)
Q Consensus 558 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 634 (748)
+|.++++.+.+. |..++..-+......|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 666666665542 3344444455555556656666666666654 45566666666666666666666666666664
Q ss_pred hhCCCCC-hhHHHHHHHHHHhcC---ChHHHHHHHhhCC
Q 041741 635 DHGVEPI-LDHYTCMIDCLGRAG---HFHEAEMLIDEMP 669 (748)
Q Consensus 635 ~~~~~~~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 669 (748)
-+.|. ...+..+++.+...| +..-|.++|.+..
T Consensus 182 --l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 182 --LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred --HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 22333 233445555544333 3444555555543
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=9.3e-05 Score=72.07 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=61.3
Q ss_pred cCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCC-HhHHHHHHHHHHhcCCHHHH
Q 041741 617 SHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDD-PVIWEVLLSSCRLHANVRLA 693 (748)
Q Consensus 617 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a 693 (748)
...|+++.|+..++.+. +..|+ +......++.+.+.++.++|.+.++++. ..|+ +..+..+...+...|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~---~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLI---AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 34455566666655553 22233 3334445555666666666666665553 3333 44555555556666666666
Q ss_pred HHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHH
Q 041741 694 KRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRE 732 (748)
Q Consensus 694 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 732 (748)
+..++.....+|+||..|..|+.+|..+|+..+|...+-
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 666666666666666666666666655555554444433
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=0.00028 Score=76.42 Aligned_cols=148 Identities=13% Similarity=0.094 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 041741 542 VGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSH 618 (748)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 618 (748)
.+..+..+|-+.|+.++|...++++.+ .|+...|.+.-.|... +.++|.+++.+.+.. +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 334444455555555555555554442 2444455555555544 555555555544442 333
Q ss_pred CCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 041741 619 SGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAA 697 (748)
Q Consensus 619 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 697 (748)
.+++..+.++|.++. ...|+ .+.+..+.+.....-. ...-..++.-+...|...++++++..++
T Consensus 182 ~kq~~~~~e~W~k~~---~~~~~d~d~f~~i~~ki~~~~~------------~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLV---HYNSDDFDFFLRIERKVLGHRE------------FTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHH---hcCcccchHHHHHHHHHHhhhc------------cchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 344555555555553 11222 2222222222111100 1122233334555566667777777777
Q ss_pred HHHHhcCCCCCcchHHHhHHHhh
Q 041741 698 EELFRLDPKNSAPYSLLANIYSS 720 (748)
Q Consensus 698 ~~~~~~~p~~~~~~~~l~~~~~~ 720 (748)
+.+++.+|.|..+..-++.+|.+
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHHH
Confidence 77777777777777777777763
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00011 Score=71.70 Aligned_cols=140 Identities=18% Similarity=0.140 Sum_probs=94.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcC
Q 041741 578 IHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAG 656 (748)
Q Consensus 578 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 656 (748)
...+...|.+++|+..++.++.. .+-|...+......+...++.++|.+.++++. ...|+ ......++.+|.+.|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcC
Confidence 34455667788888888887775 23344445566667778888888888888775 44555 334456778888888
Q ss_pred ChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 657 HFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 657 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
++++|..+++... .+.++..|..|..+|...|+..++....-+ .|+-.|+|++|...+..+
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-----------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE-----------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH-----------------HHHhCCCHHHHHHHHHHH
Confidence 8888888887775 455778888888888888877666555443 345556666666666665
Q ss_pred HhcC
Q 041741 735 SENC 738 (748)
Q Consensus 735 ~~~~ 738 (748)
+++.
T Consensus 452 ~~~~ 455 (484)
T COG4783 452 SQQV 455 (484)
T ss_pred HHhc
Confidence 5543
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=1.4e-05 Score=78.82 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHh
Q 041741 609 FVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRL 686 (748)
Q Consensus 609 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 686 (748)
...|+..+...++++.|+.+++++... .|+. ...+++++...++-.+|.+++.+.. .+.+...+......+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566667778888999999888522 3554 4457888888888888988888775 33466777777778889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 687 HANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 687 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
.++++.|..+.+++.+..|.+-.++..|+.+|...|++++|+..++.+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999888754
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.20 E-value=0.0084 Score=59.50 Aligned_cols=182 Identities=13% Similarity=0.144 Sum_probs=130.3
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCHHHHHHHhh
Q 041741 486 DIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVN-DIFVGSALIEMYCKCGDIYGARQFFD 564 (748)
Q Consensus 486 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 564 (748)
.+.....++++......--..+|...++...+..-++.|..+|.++.+.+..+ ++.+.++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45566677776654323233466677777778888899999999999998777 78888888887765 78899999998
Q ss_pred hcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcCCCChHHHHHHHHHhhhhhC--
Q 041741 565 MMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD--ITFVAILTACSHSGLVDVGVEIFNSMQLDHG-- 637 (748)
Q Consensus 565 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 637 (748)
--.+ .++.--...+.-+...++-..+..+|++....++.|+. ..|..++.-=...|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6553 34444456677777888888899999999998777766 5799999888889999999998887744443
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 041741 638 VEPILDHYTCMIDCLGRAGHFHEAEMLIDEM 668 (748)
Q Consensus 638 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 668 (748)
..+....-..+++.|.-.+.+..-..-++.+
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 3333344455666666666554444434333
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=0.00021 Score=76.64 Aligned_cols=131 Identities=8% Similarity=0.035 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHH
Q 041741 570 NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDI-TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTC 647 (748)
Q Consensus 570 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~ 647 (748)
++..+..|.....+.|++++|..+|+...+ +.|+.. ....+...+.+.+++++|...+++.. ...|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 355566666666666666666666666666 345443 44555556666666666666666653 23344 344455
Q ss_pred HHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 648 MIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 648 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
++.++...|++++|..+|+++. ..| ++..+..+...+...|+.++|...|++++....
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 6666666666666666666664 222 355666666666666666666666666666544
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=3e-05 Score=65.62 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=89.4
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--
Q 041741 593 LYKDMIASGVKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-- 669 (748)
Q Consensus 593 ~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 669 (748)
.++++... .|+. .....+...+...|++++|...++.+... .+.+...+..++.++...|++++|...+++..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666663 4544 44666777788889999999999887422 23356778889999999999999999988874
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchH
Q 041741 670 CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYS 712 (748)
Q Consensus 670 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 712 (748)
.+.++..+..+...+...|++++|...++.+++.+|++.....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 4446778888888899999999999999999999997766443
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.17 E-value=0.016 Score=61.31 Aligned_cols=225 Identities=13% Similarity=0.056 Sum_probs=115.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcchHHHHHHHh--ccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHH
Q 041741 98 NGLEEKALSVYNKMSNEGFVPTHITLASVFKAS--TALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAV 175 (748)
Q Consensus 98 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 175 (748)
.+++..|+.-..++.++ .|| ..|..++.++ .+.|..++|..+++.....+.. |..|...+-.+|...|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 33444555555444443 122 2233333332 2445555555555544444433 5666666666777777777777
Q ss_pred HHHhcCCC--CCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCCcchhcccccccccc
Q 041741 176 PVFEEMSE--PNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSRN 253 (748)
Q Consensus 176 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (748)
.++++..+ |+......+.-+|.+.+++.+-.++--+|-+ .++-+.+.|-++++.....-..++.... .-.+..
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~---~i~l~L- 172 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLD---PILLAL- 172 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCccccc---chhHHH-
Confidence 77776654 4433333444555666665554444333333 2333445555555554443211111100 011111
Q ss_pred cchhHHHHHHHHhc-CCCchHHHHHHHHHHHhcCChhHHHHHhcc-C----CCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 041741 254 VHGQQVHCLTIKLG-FEADLHLSNSLLDMYAKNGDMDSAEVIFSN-L----PERSVVSWNVMIAGYGQKYQSTKAIELLQ 327 (748)
Q Consensus 254 ~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 327 (748)
++...+.+.+.+ ..-+..-...-...+...|++++|++++.. . ..-+...-+.-+..+...+++.+..++-.
T Consensus 173 --A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 173 --AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred --HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 334444444333 333333334445566678899999998832 2 22233344456677778888888888888
Q ss_pred HHHhcC
Q 041741 328 RMKSCG 333 (748)
Q Consensus 328 ~m~~~g 333 (748)
++...|
T Consensus 251 ~Ll~k~ 256 (932)
T KOG2053|consen 251 RLLEKG 256 (932)
T ss_pred HHHHhC
Confidence 888776
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.17 E-value=3.7e-05 Score=65.61 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=56.4
Q ss_pred CCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCH----hHHHHHHHHHHhcCCHHH
Q 041741 619 SGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDP----VIWEVLLSSCRLHANVRL 692 (748)
Q Consensus 619 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~ 692 (748)
.++...+...++.+....+-.|- ......++..+...|++++|...|+... ..|++ .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44555555555555332221111 1222334555555666666666665554 12222 223334455555666666
Q ss_pred HHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHH
Q 041741 693 AKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 693 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (748)
|...++.. .-.|-.+.....+|.+|...|++++|+..|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22222445566666666666666666666654
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00023 Score=63.47 Aligned_cols=244 Identities=11% Similarity=0.019 Sum_probs=154.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 041741 477 IAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDI 556 (748)
Q Consensus 477 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (748)
++-+.-.|.+..++..-...... +-+...-..+-++|...|.+..... .+.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 45555667777666554444322 2333444455566666665543322 122212 22333333333333333443
Q ss_pred HHHH-HHhhhcCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHH
Q 041741 557 YGAR-QFFDMMHGK----NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNS 631 (748)
Q Consensus 557 ~~A~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 631 (748)
+.-. ++.+.+..+ +......-...|+..|++++|++..+... ..+.. ..=...+.+..+.+.|...+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~--Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAA--ALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 223333322 22333334467889999999999988721 22222 2223345677788999999999
Q ss_pred hhhhhCCCCChhHHHHHHHHHH----hcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 632 MQLDHGVEPILDHYTCMIDCLG----RAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 632 ~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
|. + + .+..+...|+.++. ..+...+|.-+|+++. .+|++.+.+..+.++...|++++|..+++.++..+|
T Consensus 163 mq-~--i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQ-Q--I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HH-c--c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 94 2 2 23445555666655 3467899999999996 678999999999999999999999999999999999
Q ss_pred CCCcchHHHhHHHhhcCChHHHH-HHHHHHHh
Q 041741 706 KNSAPYSLLANIYSSLGRWDDLR-AVRELMSE 736 (748)
Q Consensus 706 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 736 (748)
++|.++..+.-+-...|+-.++. +.+.+++.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999999999876654 45565544
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.13 E-value=4.4e-06 Score=60.62 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=59.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcC-ChHHHHHHHHHHHh
Q 041741 673 DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLG-RWDDLRAVRELMSE 736 (748)
Q Consensus 673 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 736 (748)
++..|..++..+...|++++|+..++++++.+|+++.++..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999999998755
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.12 E-value=0.019 Score=60.71 Aligned_cols=67 Identities=24% Similarity=0.219 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCCCCC
Q 041741 676 IWEVLLSSCRLHANV---RLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCIVKD 742 (748)
Q Consensus 676 ~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 742 (748)
+.+.++..+++.+|. -+|+.+++..+..+|.|...-..|.++|.-.|=...|.+.|+.+--+.|.-|
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 456677788888764 5688889999999999999999999999999999999999998765555443
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4.1e-05 Score=70.25 Aligned_cols=106 Identities=18% Similarity=0.159 Sum_probs=92.0
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhc-C--CHHHHHHHHHHHHhcCCCCCcchH
Q 041741 638 VEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLH-A--NVRLAKRAAEELFRLDPKNSAPYS 712 (748)
Q Consensus 638 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~-~--~~~~a~~~~~~~~~~~p~~~~~~~ 712 (748)
.+-|...|..|+.+|...|+...|...|.+.. .++++..+..+...+..+ | +..++...+++++..+|.|+.+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 34568889999999999999999999998885 566788888888775433 2 568899999999999999999999
Q ss_pred HHhHHHhhcCChHHHHHHHHHHHhcCCCCCC
Q 041741 713 LLANIYSSLGRWDDLRAVRELMSENCIVKDP 743 (748)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 743 (748)
.|+..++..|++.+|...|+.|.+..+..+|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999988776665
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=8.8e-05 Score=73.22 Aligned_cols=125 Identities=13% Similarity=0.198 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC
Q 041741 541 FVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSG 620 (748)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 620 (748)
.....|+..+...++++.|..+|+++.+.++.....+++.+...++-.+|++++++.++. .+-+...+..-...|...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 344556677777889999999999998877777777888888888889999999999975 2445566667777788999
Q ss_pred ChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 621 LVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 621 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
+++.|+.+.+++. ...|+ ..+|..|+.+|...|++++|+..++.++
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999885 45666 6789999999999999999999999887
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.07 E-value=2.8e-05 Score=61.21 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcC
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLG 722 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 722 (748)
+..++..+...|++++|...+++.. .+.++..+..+...+...+++++|...++.++...|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4567778888999999999988774 33345677777888888899999999999999999998889999999999999
Q ss_pred ChHHHHHHHHHHHhc
Q 041741 723 RWDDLRAVRELMSEN 737 (748)
Q Consensus 723 ~~~~A~~~~~~~~~~ 737 (748)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999886543
No 144
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.06 E-value=7.1e-06 Score=58.59 Aligned_cols=60 Identities=27% Similarity=0.262 Sum_probs=51.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
++..+...|++++|...++++++.+|+++.++..++.++...|++++|..+|+++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456678889999999999999999999999999999999999999999999998865443
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.05 E-value=4.7e-05 Score=62.74 Aligned_cols=93 Identities=15% Similarity=0.082 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC-CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CcchHHHhH
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMP-CKDD----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN---SAPYSLLAN 716 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 716 (748)
+-.++..+.+.|++++|.+.++.+. ..|+ +..+..++..+...|+++.|...++.++...|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344445555555555555555443 1111 2233444455555555555555555555555543 234555555
Q ss_pred HHhhcCChHHHHHHHHHHHhc
Q 041741 717 IYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 717 ~~~~~g~~~~A~~~~~~~~~~ 737 (748)
++.+.|++++|..+++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555443
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00026 Score=60.33 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCCh--hHHHHH
Q 041741 574 WNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD---ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPIL--DHYTCM 648 (748)
Q Consensus 574 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l 648 (748)
|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+.+.. ....|+. .....+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHH
Confidence 33344444 4777788888888888753 3331 2333455667788888888888888843 2222221 234457
Q ss_pred HHHHHhcCChHHHHHHHhhCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041741 649 IDCLGRAGHFHEAEMLIDEMPCK-DDPVIWEVLLSSCRLHANVRLAKRAAEELF 701 (748)
Q Consensus 649 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 701 (748)
+.++...|++++|+..++....+ ..+..+...+..+...|++++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 78888888888888888776522 345566667777888888888888888764
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=2.2e-06 Score=65.03 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=57.2
Q ss_pred cCChHHHHHHHhhCC-CCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHH
Q 041741 655 AGHFHEAEMLIDEMP-CKD---DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAV 730 (748)
Q Consensus 655 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 730 (748)
.|++++|+.+++++. ..| +...+..++.++...|++++|..++++ .+.+|.++.....+|.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 467777887777774 222 445566677788888888888888888 777777777777888888888888888888
Q ss_pred HHH
Q 041741 731 REL 733 (748)
Q Consensus 731 ~~~ 733 (748)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 148
>PRK15331 chaperone protein SicA; Provisional
Probab=97.98 E-value=6.3e-05 Score=62.65 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=78.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCCh
Q 041741 647 CMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRW 724 (748)
Q Consensus 647 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 724 (748)
..+.-+...|++++|..+|+-+. ..-++..|..|..++...+++++|...|..+..++++||.+....+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 45556678899999999998874 3446788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 041741 725 DDLRAVRELMSE 736 (748)
Q Consensus 725 ~~A~~~~~~~~~ 736 (748)
+.|+..|+....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999887655
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.95 E-value=4.9e-05 Score=75.59 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=86.3
Q ss_pred HHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-C-CCCHhHHHHHHHHHHhc
Q 041741 611 AILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-C-KDDPVIWEVLLSSCRLH 687 (748)
Q Consensus 611 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~ 687 (748)
.-...+...|++++|+..|+++. ...|+ ...+..++.+|.+.|++++|+..++++. . +.++..+..++.++...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al---~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAI---DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 33456677899999999999885 23444 6677788899999999999999998885 3 34677788888889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc
Q 041741 688 ANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSL 721 (748)
Q Consensus 688 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 721 (748)
|++++|...++++++++|+++.+...+..+..+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999888877776665444
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.94 E-value=1.7e-05 Score=48.18 Aligned_cols=35 Identities=34% Similarity=0.632 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 041741 86 VSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTH 120 (748)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 120 (748)
.+||.+|.+|++.|++++|.++|.+|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36889999999999999999999999998888873
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.94 E-value=1.8e-05 Score=48.06 Aligned_cols=35 Identities=40% Similarity=0.738 Sum_probs=32.8
Q ss_pred ehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc
Q 041741 187 VTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDS 221 (748)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 221 (748)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999974
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=3.6e-05 Score=70.02 Aligned_cols=105 Identities=13% Similarity=0.057 Sum_probs=74.1
Q ss_pred HHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCC
Q 041741 613 LTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHAN 689 (748)
Q Consensus 613 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 689 (748)
..-..+.+++.+|+..|.+.+ .+.|+ ...|..-+.+|.+.|.++.|++=.+... +.| ....|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 444567778888888888775 55665 4445566778888888888888777765 444 35677777778888888
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHhHHHhh
Q 041741 690 VRLAKRAAEELFRLDPKNSAPYSLLANIYSS 720 (748)
Q Consensus 690 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 720 (748)
+++|++.|+++++++|+|...-..|.++-.+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 8888888888888888777555555444333
No 153
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=2e-05 Score=47.40 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=31.6
Q ss_pred ehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 041741 187 VTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSI 219 (748)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 219 (748)
.+|+.++.++++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999987
No 154
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.90 E-value=0.00072 Score=56.76 Aligned_cols=132 Identities=12% Similarity=0.067 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC---CHhHH
Q 041741 602 VKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD---DPVIW 677 (748)
Q Consensus 602 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~ 677 (748)
..|+...-..|..+....|++.+|...|++. ...-+--|...+..++++....+++.+|...++++- .+| +|...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qa-lsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQA-LSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHH-hccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3566666666777778888888888888777 343445556667777777888888888888877763 222 35555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 678 EVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 678 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
..+...+...|.+++|+..++.++.-.| ++..-...+..+.++|+.++|...+..+-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 5677778888888888888888888888 77777777788888887777766555443
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=2.4e-05 Score=47.06 Aligned_cols=33 Identities=27% Similarity=0.586 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 041741 86 VSWNNLISALVRNGLEEKALSVYNKMSNEGFVP 118 (748)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 118 (748)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567788888888888888888888888777766
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.89 E-value=0.00015 Score=59.66 Aligned_cols=105 Identities=11% Similarity=0.034 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCC----HhHHHHHH
Q 041741 608 TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDD----PVIWEVLL 681 (748)
Q Consensus 608 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 681 (748)
++..++..+...|++++|...++.+.....-.+ ....+..++.++.+.|++++|...++.+. ..|+ +..+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 345555666677777777777777643321111 12345567777788888888888877764 2222 45566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchH
Q 041741 682 SSCRLHANVRLAKRAAEELFRLDPKNSAPYS 712 (748)
Q Consensus 682 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 712 (748)
..+...|+.++|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7788888888888888888888887665443
No 157
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.87 E-value=0.025 Score=53.89 Aligned_cols=270 Identities=17% Similarity=0.159 Sum_probs=171.9
Q ss_pred cCChHHHHHHHhhCC---CCCcchHHHHHHH--HHhCCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHhhcCCCCchhH
Q 041741 452 CQRNELAERVFHRIP---ELDIVCWNSMIAG--LSLNSLDIEAFMFFKQMRQNEMYPTQF--SFATVLSSCAKLSSSFQG 524 (748)
Q Consensus 452 ~~~~~~a~~~~~~~~---~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a 524 (748)
.|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|... |... -+..|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 344444444443332 2233333334433 33478888888888888743 2211 233444445677888888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHHH--HHHHHHHH---HHcCChhHHHHHH
Q 041741 525 RQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMH-----GKNTVT--WNEMIHGY---AQNGYGDEAVRLY 594 (748)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~--~~~l~~~~---~~~~~~~~a~~~~ 594 (748)
.++-+.....- +--.......+...+..|+|+.|+++++.-. +++..- --.|+.+- .-.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88777665543 2235566788888999999999999988654 344321 11222211 1123556666666
Q ss_pred HHHHHcCCCCCHH-HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHH------hh
Q 041741 595 KDMIASGVKPDDI-TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLI------DE 667 (748)
Q Consensus 595 ~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------~~ 667 (748)
.+..+ +.||.. .-.....++.+.|+..++-.+++.+ .+..|.+.+.. ...+.+.|+. +..-+ ++
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~a---WK~ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETA---WKAEPHPDIAL--LYVRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHH---HhcCCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHh
Confidence 66665 567764 3445567889999999999999987 34556655442 2233455543 33333 33
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc-CChHHHHHHHHHHHh
Q 041741 668 MPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSL-GRWDDLRAVRELMSE 736 (748)
Q Consensus 668 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 736 (748)
|. +.+.........+....|++..|..-.+.+....| ...++.+|+++-... ||-.+++..+-+..+
T Consensus 324 lk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 33 34556666677788889999999999999999999 678899999998776 999999988876544
No 158
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00042 Score=65.89 Aligned_cols=164 Identities=13% Similarity=0.031 Sum_probs=118.0
Q ss_pred CHHHHHHHH-HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhH----
Q 041741 570 NTVTWNEMI-HGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDH---- 644 (748)
Q Consensus 570 ~~~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---- 644 (748)
...+|..+- .++.-.|++++|..+--..++.. ..+......-..++...++.+.|+..|++.+ ...|+...
T Consensus 167 ac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 167 ACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 334454443 46667889999888877777642 2222222222334456778888998888774 44555322
Q ss_pred ---------HHHHHHHHHhcCChHHHHHHHhhCC-CCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 041741 645 ---------YTCMIDCLGRAGHFHEAEMLIDEMP-CKD-----DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA 709 (748)
Q Consensus 645 ---------~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 709 (748)
+..=++-..+.|++.+|.+.|.+.. +.| +...|.....+..+.|+.++|+...+.+++++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 1222445668899999999998875 444 3445666666778899999999999999999999999
Q ss_pred chHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 710 PYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
++...+.++...++|++|++.++...+.
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999987653
No 159
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.84 E-value=0.00043 Score=58.05 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=93.5
Q ss_pred hhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CC
Q 041741 634 LDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP---CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK--NS 708 (748)
Q Consensus 634 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~ 708 (748)
++...-|++..--.|+.++...|+..||...|++.. ...|+..+..+.++....+++..|...++++.+.+|. +|
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 444667888888899999999999999999999885 5568899999999999999999999999999999886 78
Q ss_pred cchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 709 APYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
.....++.+|...|++++|+..++.+....+
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 8999999999999999999999998766433
No 160
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.81 E-value=6.3e-05 Score=55.24 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=51.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 682 SSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 682 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
..+...+++++|.++++.++.++|+++..+...|.++...|++++|.+.++...+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4577889999999999999999999999999999999999999999999998876554
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.81 E-value=0.00016 Score=63.82 Aligned_cols=81 Identities=19% Similarity=0.113 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC-CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHH
Q 041741 643 DHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDD----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANI 717 (748)
Q Consensus 643 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 717 (748)
..+..++..+...|++++|...+++.. ..|+ ...+..++..+...|++++|...++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566667777777777777776663 1221 34666777777888888888888888888888888888888888
Q ss_pred HhhcCC
Q 041741 718 YSSLGR 723 (748)
Q Consensus 718 ~~~~g~ 723 (748)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 877766
No 162
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.78 E-value=0.043 Score=53.27 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCh
Q 041741 543 GSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLV 622 (748)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 622 (748)
.+..+.-+...|+...|.++-.+..=|+..-|...+.+++..++|++-...... +-++..|...+.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 334455555666677777776666666767777777777777777655543321 11224566666666666766
Q ss_pred HHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 041741 623 DVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDE 667 (748)
Q Consensus 623 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 667 (748)
.+|..+..++. +..-++.|.+.|++.+|.+.--+
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666655431 13355666667777666665444
No 163
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.78 E-value=2.1e-05 Score=56.86 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=44.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 685 RLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 685 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
...|++++|...++++++.+|+++.+...++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 457888889999999888899888888889999999999999988888765543
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.77 E-value=0.00011 Score=64.63 Aligned_cols=93 Identities=14% Similarity=-0.076 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhH
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDD----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLAN 716 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 716 (748)
...+..++..+...|++++|...+++.. ..|+ +.++..+...+...|++++|...++++++++|.++..+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556677788888899999999888773 2222 3477888888999999999999999999999999888889998
Q ss_pred HHh-------hcCChHHHHHHHHHH
Q 041741 717 IYS-------SLGRWDDLRAVRELM 734 (748)
Q Consensus 717 ~~~-------~~g~~~~A~~~~~~~ 734 (748)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666665544
No 165
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.76 E-value=0.11 Score=57.20 Aligned_cols=246 Identities=15% Similarity=0.117 Sum_probs=163.1
Q ss_pred hHHHHHHHHhCCCCCcc-hhhHHHHHHHccCCchhhhhhhhcCCC--Cchh-hhhHHHHHhhcCCChhHHHHhhccCCCC
Q 041741 8 KLLHAHILRNGLFDDTF-LCNRLIELYSKCNNTHSAQHLFDKMPH--KDIY-SWNAILSAQCKSDDLEFAYKLFDEMPER 83 (748)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 83 (748)
+..|.+..-..+.|+-. .+..|+..|...+++++|..+.+...+ |+.. .|..+.-.+.+.++...+..+
T Consensus 15 ee~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv------- 87 (906)
T PRK14720 15 EEKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL------- 87 (906)
T ss_pred hhhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------
Confidence 45666666666666444 688899999899999999998886654 4432 333333355666665444433
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHH
Q 041741 84 NVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLS 163 (748)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (748)
.++..+....++.-...+...|... .-+...+..+..+|.+.|+.+++..+++.+.+.+ +.++.+.|.+.-
T Consensus 88 ------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY 158 (906)
T PRK14720 88 ------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLAT 158 (906)
T ss_pred ------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHH
Confidence 3444455555564444455555542 3344577788888889999999999999999988 667888999999
Q ss_pred HHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhccCCCCCcch
Q 041741 164 LYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSV-SLSSVLGVCAREGCGVESDV 242 (748)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-t~~~ll~~~~~~~~~~~~~~ 242 (748)
.|... +.++|++++.+ .+..+...+++..+.+++..+.... |+.. .|..++......
T Consensus 159 ~~ae~-dL~KA~~m~~K-----------AV~~~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~ki~~~-------- 216 (906)
T PRK14720 159 SYEEE-DKEKAITYLKK-----------AIYRFIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIERKVLGH-------- 216 (906)
T ss_pred HHHHh-hHHHHHHHHHH-----------HHHHHHhhhcchHHHHHHHHHHhcC--cccchHHHHHHHHHHhh--------
Confidence 99888 99999988775 4445777788999999999888752 2222 222222222111
Q ss_pred hcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCCCC---CcccHHHHHHHHH
Q 041741 243 FAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPER---SVVSWNVMIAGYG 314 (748)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 314 (748)
.|..--..++..+-..|-...+|+++..+++.+.+. |.....-++..|.
T Consensus 217 -----------------------~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 -----------------------REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred -----------------------hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 123334455666777788888999999999988763 3345555555554
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.73 E-value=5.3e-05 Score=54.04 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=51.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 041741 648 MIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS 708 (748)
Q Consensus 648 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 708 (748)
++..+...|++++|.+.++++. ..| ++..+..+..++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5678889999999999999885 334 678888889999999999999999999999999774
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00016 Score=65.91 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=82.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcC
Q 041741 578 IHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAG 656 (748)
Q Consensus 578 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 656 (748)
..-+.+.++|.+|+..|.++++.. +-|.+-|..-..+|.+.|.++.|++-.+..+ .+.|. ...|..|+.+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 456788999999999999999952 3455667788889999999999999988774 55666 678999999999999
Q ss_pred ChHHHHHHHhhCC-CCCCHhHHHHHHH
Q 041741 657 HFHEAEMLIDEMP-CKDDPVIWEVLLS 682 (748)
Q Consensus 657 ~~~~A~~~~~~~~-~~~~~~~~~~l~~ 682 (748)
++++|.+.|++.. +.|+..+|..-+.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 9999999999886 7776655544443
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.69 E-value=0.00032 Score=69.79 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=70.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHh
Q 041741 576 EMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGR 654 (748)
Q Consensus 576 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 654 (748)
.....+...|++++|+..|+++++.. +-+...|..+..+|...|++++|+..++++. .+.|+ ...|..++.+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHH
Confidence 34556677888888998888888853 3455677777888888888888888888875 33443 5667788888888
Q ss_pred cCChHHHHHHHhhCC-CCCC
Q 041741 655 AGHFHEAEMLIDEMP-CKDD 673 (748)
Q Consensus 655 ~g~~~~A~~~~~~~~-~~~~ 673 (748)
.|++++|...+++.. ..|+
T Consensus 83 lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCC
Confidence 899998888888875 4444
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.65 E-value=0.00072 Score=70.32 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 675 VIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 675 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
..+..+.......|++++|...++++++++| +..+|..+|.+|...|+.++|.+.|+++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344343333344555555555555555555 3445555555555555555555555543
No 170
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.64 E-value=2.8e-05 Score=46.14 Aligned_cols=33 Identities=30% Similarity=0.591 Sum_probs=31.1
Q ss_pred HHHHHhcCCCCCcchHHHhHHHhhcCChHHHHH
Q 041741 697 AEELFRLDPKNSAPYSLLANIYSSLGRWDDLRA 729 (748)
Q Consensus 697 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 729 (748)
++++++++|+|+.++..||.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999963
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0011 Score=58.48 Aligned_cols=129 Identities=17% Similarity=0.168 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHH
Q 041741 570 NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPD--DITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYT 646 (748)
Q Consensus 570 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ 646 (748)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+...|++++|...+++... ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 445677788888888999999999988887533332 24677778888888888888888887742 3343 45566
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcC
Q 041741 647 CMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLG 722 (748)
Q Consensus 647 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 722 (748)
.++.++...|+...+..-++.. ...+++|.+.++++++.+|++ +..++..+...|
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 6777777777766655433321 123678899999999999966 444444444444
No 172
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.52 E-value=0.11 Score=50.87 Aligned_cols=49 Identities=6% Similarity=0.002 Sum_probs=30.0
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 041741 582 AQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSM 632 (748)
Q Consensus 582 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 632 (748)
..+|++.++.-.-..+.+ +.|++.+|..++-+.....++++|.+++..+
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 345666666555555544 5666666666666666666666666666544
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.51 E-value=0.00024 Score=53.77 Aligned_cols=80 Identities=16% Similarity=0.382 Sum_probs=43.1
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHH
Q 041741 584 NGYGDEAVRLYKDMIASGVK-PDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEA 661 (748)
Q Consensus 584 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 661 (748)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|+.++++. ...|+ ....-.++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666677777766664321 12334444666666666666666666652 12222 23333446666666666666
Q ss_pred HHHHhh
Q 041741 662 EMLIDE 667 (748)
Q Consensus 662 ~~~~~~ 667 (748)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666653
No 174
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.51 E-value=0.00014 Score=42.42 Aligned_cols=31 Identities=35% Similarity=0.617 Sum_probs=27.2
Q ss_pred ehHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 041741 187 VTFTAMMSGLAKTDRVVEALEMFRLMIRKAV 217 (748)
Q Consensus 187 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 217 (748)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.49 E-value=8.5e-05 Score=53.61 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=31.7
Q ss_pred hcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 041741 654 RAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLL 714 (748)
Q Consensus 654 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 714 (748)
..|++++|.+.++++. .+.++..+..++..+...|++++|...++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4455555555555553 233455555555555555555555555555555555544444433
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.48 E-value=0.0037 Score=65.19 Aligned_cols=139 Identities=15% Similarity=0.089 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHH--cC---ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCC--------CChHHHHHHHHHhhh
Q 041741 569 KNTVTWNEMIHGYAQ--NG---YGDEAVRLYKDMIASGVKPDD-ITFVAILTACSHS--------GLVDVGVEIFNSMQL 634 (748)
Q Consensus 569 ~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~ 634 (748)
.|...|...+++... .+ +...|..+|++.++. .|+. ..+..+..++... +++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455666666655332 22 356788888888884 5665 3344333332111 123344444443321
Q ss_pred hhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 041741 635 DHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA 709 (748)
Q Consensus 635 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 709 (748)
......+...+..++-.....|++++|...+++.. ..|+...+..++..+...|+.++|.+.++++++++|.+|.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 11233345677777777778899999999999886 6678788888888999999999999999999999997774
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.46 E-value=0.13 Score=50.32 Aligned_cols=236 Identities=10% Similarity=0.038 Sum_probs=135.6
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHhhcCCCCchhHHHHHHHHHHhCCCC----chHHHHHHHHHHHhcCCHHHHHHHhhh
Q 041741 491 MFFKQMRQNEMYPTQF-SFATVLSSCAKLSSSFQGRQVHAQIEKDGYVN----DIFVGSALIEMYCKCGDIYGARQFFDM 565 (748)
Q Consensus 491 ~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (748)
+++....+.-+.|+.. ....++..+.. +.+++..+-+.+....+.+ -+.++..++....+.++...|.+.+.-
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444445666544 33445554444 5566655555554443222 245667777778888888888888775
Q ss_pred cC--CCCHHH-------HHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHH-HHHHH---HHhcCCCC-hHHHHH
Q 041741 566 MH--GKNTVT-------WNEMIHGYAQ----NGYGDEAVRLYKDMIASGVKPDDIT-FVAIL---TACSHSGL-VDVGVE 627 (748)
Q Consensus 566 ~~--~~~~~~-------~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~---~~~~~~~~-~~~A~~ 627 (748)
+. +|+... -..+-+..+. .-+..+=+.+|+..... ..|..- ...++ .-+.+.|. -++|++
T Consensus 324 L~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~--DiDrqQLvh~L~~~Ak~lW~~g~~dekaln 401 (549)
T PF07079_consen 324 LKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY--DIDRQQLVHYLVFGAKHLWEIGQCDEKALN 401 (549)
T ss_pred HHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 54 343221 1112222221 11233345566666664 344432 22222 33566666 788999
Q ss_pred HHHHhhhhhCCCCChhHHHHHHH-----HHHhc---CChHHH---HHHHhhCCCCC----CHhHHHHHHHH--HHhcCCH
Q 041741 628 IFNSMQLDHGVEPILDHYTCMID-----CLGRA---GHFHEA---EMLIDEMPCKD----DPVIWEVLLSS--CRLHANV 690 (748)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~---g~~~~A---~~~~~~~~~~~----~~~~~~~l~~~--~~~~~~~ 690 (748)
+++.+. .+.|...-....+. .|..+ ..+.+- ..++++...+| +...-+.|..+ +..+|++
T Consensus 402 LLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 402 LLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 988874 33333111112221 22211 111111 12233333343 34456666665 5678999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 691 RLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 691 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
.++.-.-.-+.+..| ++.++..+|-+.....++++|..+++.+
T Consensus 479 ~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 479 HKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 999999999999999 9999999999999999999999999863
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.45 E-value=0.00017 Score=42.09 Aligned_cols=31 Identities=39% Similarity=0.670 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041741 86 VSWNNLISALVRNGLEEKALSVYNKMSNEGF 116 (748)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 116 (748)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677778888888888888888887777653
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.45 E-value=0.0027 Score=61.21 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH----cCCCCCH--HHHHHHHHHhcCC-CChHHHHHHHHHhhhhhCCCCC----h
Q 041741 574 WNEMIHGYAQNGYGDEAVRLYKDMIA----SGVKPDD--ITFVAILTACSHS-GLVDVGVEIFNSMQLDHGVEPI----L 642 (748)
Q Consensus 574 ~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~--~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~----~ 642 (748)
|.....+|.+. ++++|++.+++..+ .| .|+. .++..+...|... |++++|++.|++...-+.-... .
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAA 155 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 33344444444 77777777766554 23 3333 3566777788888 9999999999987543322222 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC----CCC--CH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc---
Q 041741 643 DHYTCMIDCLGRAGHFHEAEMLIDEMP----CKD--DP---VIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAP--- 710 (748)
Q Consensus 643 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--- 710 (748)
..+..++..+.+.|++++|.++|++.. ..+ .. ..+...+-.+...||+..|...+++....+|.-..+
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 456778899999999999999998763 111 11 122233345667899999999999999998864433
Q ss_pred --hHHHhHHHhhc--CChHHHHHHHHH
Q 041741 711 --YSLLANIYSSL--GRWDDLRAVREL 733 (748)
Q Consensus 711 --~~~l~~~~~~~--g~~~~A~~~~~~ 733 (748)
...|..++... ..+++|+.-|..
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 44445554332 344455555554
No 180
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.44 E-value=0.00097 Score=52.09 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=48.1
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcC
Q 041741 612 ILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHA 688 (748)
Q Consensus 612 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 688 (748)
+...+...|++++|+..++.+.. ..|+ ...+..++.++...|++++|.+.++... .+.++..+..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 33344445555555555554421 1121 2344455555555566666666655542 2223345555556666666
Q ss_pred CHHHHHHHHHHHHhcCC
Q 041741 689 NVRLAKRAAEELFRLDP 705 (748)
Q Consensus 689 ~~~~a~~~~~~~~~~~p 705 (748)
+++.|...++.+++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66677766666666655
No 181
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.41 E-value=0.00033 Score=50.63 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHA-NVRLAKRAAEELFRLDP 705 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 705 (748)
...|..++..+...|++++|+..|++.. .+.++..+..+..++...| ++++|.+.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567788888999999999999988875 4446778888888888888 79999999999999988
No 182
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.40 E-value=0.18 Score=50.54 Aligned_cols=123 Identities=11% Similarity=0.144 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHh
Q 041741 441 VASGLIGIYSKCQRNELAERVFHRIPE-----LDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSF-ATVLSS 514 (748)
Q Consensus 441 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~ 514 (748)
++-.+++.-.+..-+..|..+|.+..+ .++...++++..|| .++..-|..+|+--.+. -+|...| ...+.-
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHH
Confidence 344444444445555555555555543 13444555555544 35566677777665543 2333332 344555
Q ss_pred hcCCCCchhHHHHHHHHHHhCCCC--chHHHHHHHHHHHhcCCHHHHHHHhhhc
Q 041741 515 CAKLSSSFQGRQVHAQIEKDGYVN--DIFVGSALIEMYCKCGDIYGARQFFDMM 566 (748)
Q Consensus 515 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (748)
+...++-..+..+|+.....++++ +..+|..++..=..-|++..+.++-++.
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 566777777777787777775555 3577777777777778887777765544
No 183
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.39 E-value=0.039 Score=56.04 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 608 TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 608 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
+...+...+.+...+.-|-++|.+|- + ...+++.....++|++|..+-++.+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~g-D---------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMG-D---------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhc-c---------HHHHhhheeecccchHhHhhhhhCc
Confidence 33333334444455555666666551 1 2345555666666666666666654
No 184
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.37 E-value=0.037 Score=54.05 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=95.9
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCC-------CHHHHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041741 545 ALIEMYCKCGDIYGARQFFDMMHGK-------NTVTWNEMIHGYAQ---NGYGDEAVRLYKDMIASGVKPDDITFVAILT 614 (748)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 614 (748)
.++-.|....+++...++.+.+... ....-...+.++-+ .|+.++|++++..+....-.++..+|..+++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566666666666666665542 12222234445555 6778888888877655555677777777766
Q ss_pred Hhc---------CCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHH----HHH---hhC-----CCC--
Q 041741 615 ACS---------HSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAE----MLI---DEM-----PCK-- 671 (748)
Q Consensus 615 ~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~---~~~-----~~~-- 671 (748)
.|- .....++|+..|.+. +.+.|+..+-..++..+...|...+.. ++. ..+ ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 551 123467788777754 456676555445555555555432222 222 111 122
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041741 672 DDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 672 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 706 (748)
.+-..+..++.++.-.||+++|.+.++++..+.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 23444566777888899999999999999999873
No 185
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.37 E-value=0.00027 Score=45.29 Aligned_cols=43 Identities=26% Similarity=0.427 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhH
Q 041741 674 PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLAN 716 (748)
Q Consensus 674 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 716 (748)
|..+..+...+...|++++|++.++++++.+|+|+.++..|+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567788899999999999999999999999999998888875
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.36 E-value=0.0014 Score=61.38 Aligned_cols=91 Identities=8% Similarity=-0.048 Sum_probs=42.1
Q ss_pred cCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC----CHhHHHHHHHHHHhcCCH
Q 041741 617 SHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD----DPVIWEVLLSSCRLHANV 690 (748)
Q Consensus 617 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~ 690 (748)
.+.|++++|+..|+.+...+.-.+- ...+-.++.+|...|++++|...|+.+. ..| .+..+..++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 4445555555555555432211110 1234445555555555555555555543 111 233344444444455555
Q ss_pred HHHHHHHHHHHhcCCCC
Q 041741 691 RLAKRAAEELFRLDPKN 707 (748)
Q Consensus 691 ~~a~~~~~~~~~~~p~~ 707 (748)
++|...++++++..|++
T Consensus 234 ~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 55555555555555543
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.34 E-value=0.013 Score=54.68 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=47.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---cchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDPKNS---APYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
+...|.+.|.+..|..-++.+++..|+.+ .++..+..+|...|..++|..+.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 44557788999999999999999988755 468889999999999999999887654
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.34 E-value=0.0059 Score=58.56 Aligned_cols=134 Identities=12% Similarity=0.132 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHH
Q 041741 572 VTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTA-CSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMID 650 (748)
Q Consensus 572 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 650 (748)
..|-.+++...+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 356777777777777888888888887542 2233344433333 333566777888888886554 445566778888
Q ss_pred HHHhcCChHHHHHHHhhCC-CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 041741 651 CLGRAGHFHEAEMLIDEMP-CKD----DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS 708 (748)
Q Consensus 651 ~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 708 (748)
.+.+.|+.+.|..+|++.. .-| ...+|...+..-...|+.+....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 8888888888988888875 222 235888888888888999999999999888887643
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.33 E-value=0.0015 Score=52.44 Aligned_cols=86 Identities=21% Similarity=-0.001 Sum_probs=50.4
Q ss_pred HHHHHHhcCChHHHHHHHhhCC-CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCcchHHHhHHHh
Q 041741 648 MIDCLGRAGHFHEAEMLIDEMP-CKD----DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK---NSAPYSLLANIYS 719 (748)
Q Consensus 648 l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 719 (748)
++.++-..|+.++|+.+|++.. ..+ ....+..+...++..|++++|..++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4455556666666666666553 111 1234445556666667777777777766666665 4445555666666
Q ss_pred hcCChHHHHHHHHH
Q 041741 720 SLGRWDDLRAVREL 733 (748)
Q Consensus 720 ~~g~~~~A~~~~~~ 733 (748)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 66777766665443
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.32 E-value=0.18 Score=48.99 Aligned_cols=105 Identities=13% Similarity=0.178 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 041741 276 NSLLDMYAKNGDMDSAEVIFSNLPERSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIK 355 (748)
Q Consensus 276 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 355 (748)
+..+.-+...|....|.++..+..-|+..-|...+.+++..++|++-..+... +-++.-|..++.+|...|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33444555566666666666666556666666666666666666655544321 112355566666666666666
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHH
Q 041741 356 TGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLF 392 (748)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 392 (748)
+|...+..+ .+..-+..|.+.|++.+|.+.-
T Consensus 255 eA~~yI~k~------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 255 EASKYIPKI------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHhC------ChHHHHHHHHHCCCHHHHHHHH
Confidence 666655552 2244455556666666665543
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.30 E-value=0.0027 Score=48.84 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=65.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCcchHHHHHHHhcccc--------CcHHHhHHHHHHHHHCCCCcHhHHHH
Q 041741 90 NLISALVRNGLEEKALSVYNKMSNEGF-VPTHITLASVFKASTALL--------DVEHGRRCHGLVIKIGLDKNIYVANA 160 (748)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (748)
..|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. .+-....+|+.|...++.|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445566677999999999999999999 899999999999887653 23456778999999999999999999
Q ss_pred HHHHHHh
Q 041741 161 LLSLYAK 167 (748)
Q Consensus 161 li~~~~~ 167 (748)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9887765
No 192
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.30 E-value=0.0036 Score=55.04 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCCCChHHHHHHHHHhh
Q 041741 572 VTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPD--DITFVAILTACSHSGLVDVGVEIFNSMQ 633 (748)
Q Consensus 572 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 633 (748)
..|..++..+...|++++|+..|++.......|. ..++..+...+...|++++|+..+++..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666666666666665421211 1345556666666666666666666553
No 193
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.29 E-value=0.0069 Score=50.54 Aligned_cols=95 Identities=11% Similarity=0.010 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCC
Q 041741 545 ALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGL 621 (748)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 621 (748)
.+...+...|++++|..+|+.+.. .+..-|-.|..++...|++.+|+..|....... +-|+..+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 344445566777777777765542 245556666677777777777777777776653 3344556666667777777
Q ss_pred hHHHHHHHHHhhhhhCCCC
Q 041741 622 VDVGVEIFNSMQLDHGVEP 640 (748)
Q Consensus 622 ~~~A~~~~~~~~~~~~~~~ 640 (748)
.+.|.+.|+......+-.|
T Consensus 119 ~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 119 VCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHHHHHHHHHHHhccCh
Confidence 7777777776644333333
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.27 E-value=0.0011 Score=63.04 Aligned_cols=257 Identities=13% Similarity=0.036 Sum_probs=146.4
Q ss_pred HHhCCCchHHHHHHHHHHHCCCC---CCHHHHHHHHHhhcCCCCchhHHHHHHHHH--Hh--CCCC-chHHHHHHHHHHH
Q 041741 480 LSLNSLDIEAFMFFKQMRQNEMY---PTQFSFATVLSSCAKLSSSFQGRQVHAQIE--KD--GYVN-DIFVGSALIEMYC 551 (748)
Q Consensus 480 ~~~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~--~~~~-~~~~~~~l~~~~~ 551 (748)
+++.|+....+.+|+...+.|-. .-+..|..|.++|.-.+++++|.++...=. .. |-.. .......|...+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 55666666666666666665521 112234455566666666666666543311 00 1111 1112222333344
Q ss_pred hcCCHHHHHHHhhhcCC---------CCHHHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHH---
Q 041741 552 KCGDIYGARQFFDMMHG---------KNTVTWNEMIHGYAQNGY--------------------GDEAVRLYKDMIA--- 599 (748)
Q Consensus 552 ~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~~--- 599 (748)
-.|.+++|.-...+-.. -....+..+...|...|+ ++.|.+.|.+-++
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556665543322110 012233344555544332 2334444443222
Q ss_pred -cCCC-CCHHHHHHHHHHhcCCCChHHHHHHHHHh---hhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC----
Q 041741 600 -SGVK-PDDITFVAILTACSHSGLVDVGVEIFNSM---QLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP---- 669 (748)
Q Consensus 600 -~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 669 (748)
.|-. .-...|..|...|.-.|+++.|+...+.- .+++|-+.. ...+..++.++.-.|+++.|.+.|+.-.
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 1100 11135677777778889999998876532 133443332 4467789999999999999999887642
Q ss_pred -CC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC--CCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 670 -CK---DDPVIWEVLLSSCRLHANVRLAKRAAEELFRLD----PK--NSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 670 -~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.. .....-..|.+.|.-..++++|+.+..+=+.+. .. ..-++++|+.+|-..|..++|+.+.+.-++
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11 123444567777777788999998877765542 21 345799999999999999999998887665
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.25 E-value=0.0011 Score=65.16 Aligned_cols=63 Identities=14% Similarity=-0.083 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc---hHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 674 PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAP---YSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 674 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
+..+..+...+...|++++|...++++++++|+++.+ ++.++.+|..+|+.++|+..++++.+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555554432 55555555555555555555555443
No 196
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.25 E-value=0.0036 Score=60.40 Aligned_cols=159 Identities=8% Similarity=-0.038 Sum_probs=94.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCC---CCCH--HHHHHHHHHhcCCCChHHHHHHHHHhhhhhC--CCCC--hhHHHH
Q 041741 577 MIHGYAQNGYGDEAVRLYKDMIASGV---KPDD--ITFVAILTACSHSGLVDVGVEIFNSMQLDHG--VEPI--LDHYTC 647 (748)
Q Consensus 577 l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~--~~~~~~ 647 (748)
....|...|++++|.+.|.+..+... .+.. ..|......|.+. ++++|+..+++...-+. -.|+ ...+..
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44555556666666666655443211 1111 2233333344333 66677776666532211 1121 345667
Q ss_pred HHHHHHhc-CChHHHHHHHhhCC------CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------ch
Q 041741 648 MIDCLGRA-GHFHEAEMLIDEMP------CKD--DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA-------PY 711 (748)
Q Consensus 648 l~~~~~~~-g~~~~A~~~~~~~~------~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~ 711 (748)
++..|... |++++|.+.|++.. ..+ ....+..++..+...|++++|.+.+++.....-+++. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 78888888 99999999988773 111 1345667777899999999999999998876443332 24
Q ss_pred HHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 712 SLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
...+-++...||.-.|.+.+++...
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566678888999999999998543
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.24 E-value=0.00075 Score=49.43 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=55.2
Q ss_pred HHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHh
Q 041741 649 IDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLA 715 (748)
Q Consensus 649 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 715 (748)
..+|.+.+++++|.+.++.+. .+.++..|...+..+...|++++|.+.++++++..|+++......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 356788999999999999886 4456778888888899999999999999999999997766655443
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.21 E-value=0.0042 Score=58.30 Aligned_cols=95 Identities=14% Similarity=0.030 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC-CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---cchHHHhH
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMP-CKDD----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS---APYSLLAN 716 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 716 (748)
|......+.+.|++++|...|+... ..|+ +..+..++..+...|++++|...|++++...|+++ .++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444444456688888888887775 2232 35666677778888888888888888888777654 45666678
Q ss_pred HHhhcCChHHHHHHHHHHHhcCC
Q 041741 717 IYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 717 ~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
++...|++++|..+|+.+.+..+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCc
Confidence 88888888888888887766544
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.17 E-value=0.0067 Score=60.50 Aligned_cols=120 Identities=9% Similarity=0.056 Sum_probs=82.3
Q ss_pred CCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHh--CCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC----CCHHH
Q 041741 500 EMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKD--GYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG----KNTVT 573 (748)
Q Consensus 500 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 573 (748)
+.+.+...+..+++.+....+.+.+..++..+... ....-+.+..++++.|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777777777777777665 2222333445777778888888888877765443 77778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 041741 574 WNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHS 619 (748)
Q Consensus 574 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 619 (748)
++.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888777777766666666666555555443
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.12 E-value=0.15 Score=52.05 Aligned_cols=101 Identities=7% Similarity=-0.004 Sum_probs=67.4
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhh
Q 041741 557 YGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDH 636 (748)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 636 (748)
+-+.++-.++...+..+...+..-+.+...+.-|.++|.+|-+ ...+++.....++|++|..+-++. .
T Consensus 733 d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~h---P 800 (1081)
T KOG1538|consen 733 DMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKH---P 800 (1081)
T ss_pred HHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhC---c
Confidence 3334444444445666666666666677778888889888765 346677888999999999998765 3
Q ss_pred CCCCChhH-----------HHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 637 GVEPILDH-----------YTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 637 ~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
.+.||+.. +...-.+|.++|+..||..+++++.
T Consensus 801 e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 801 EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 55666432 2233456667777777777777664
No 201
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.10 E-value=0.0061 Score=60.76 Aligned_cols=120 Identities=11% Similarity=0.046 Sum_probs=98.7
Q ss_pred CCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHC--CCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCC----CCeeh
Q 041741 115 GFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIG--LDKNIYVANALLSLYAKCGWTKHAVPVFEEMSE----PNEVT 188 (748)
Q Consensus 115 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~ 188 (748)
+.+.+......+++.+....+++.+..++-...... ...-..|..++|+.|.+.|..+.++.++..-.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 445566677888888888888888888888887763 333445667999999999999999999887554 89999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhcc
Q 041741 189 FTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCARE 234 (748)
Q Consensus 189 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 234 (748)
+|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999888888888888877777665
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.025 Score=50.80 Aligned_cols=136 Identities=11% Similarity=0.021 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhC----CCCChhHHHHH
Q 041741 573 TWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHG----VEPILDHYTCM 648 (748)
Q Consensus 573 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~l 648 (748)
.-+.++.++.-.|.+.-.+..+++.++...+-++.....|++.-.+.||.+.|..+|+...+..+ +.-........
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566677777788888888999988865555666777888888889999999999987633222 22223333344
Q ss_pred HHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 041741 649 IDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS 708 (748)
Q Consensus 649 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 708 (748)
...+.-++++.+|...+.++. .+.++...+.-.-...-.|+...|...++.+.+..|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 556677788888888888876 333455555555555556788888888888888888533
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.065 Score=48.23 Aligned_cols=146 Identities=15% Similarity=0.116 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 041741 588 DEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDE 667 (748)
Q Consensus 588 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 667 (748)
+..++.|++=.. ...+.++..+.-.|.+.-....+.+.. ....+.++.....+++.-...||.+.|...+++
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi-~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVI-KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHH-HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 445555554332 123444555555566666667777763 333344555666777777777777777777764
Q ss_pred CC--------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 668 MP--------CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 668 ~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
.. ......+.......+.-++++..|...+.+.++.+|.++.+...-+-+..-.|+..+|++..+.|+++-+
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 32 2222333344444566677777777777777777777777777777777777777777777777766544
Q ss_pred CC
Q 041741 740 VK 741 (748)
Q Consensus 740 ~~ 741 (748)
.+
T Consensus 318 ~~ 319 (366)
T KOG2796|consen 318 RH 319 (366)
T ss_pred cc
Confidence 33
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.66 Score=48.14 Aligned_cols=62 Identities=8% Similarity=0.036 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 041741 571 TVTWNEMIHGYAQNGYGDEAVRLYKDMIA-SGVKPDDITFVAILTACSHSGLVDVGVEIFNSM 632 (748)
Q Consensus 571 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 632 (748)
...|-+|.+-....|..+.|+..--.+.+ ..+-|....|..+.-+-+....+...-+.|-++
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 34455566666777888888775444332 225566677776655544444444333333333
No 205
>PRK11906 transcriptional regulator; Provisional
Probab=96.91 E-value=0.0087 Score=59.17 Aligned_cols=142 Identities=8% Similarity=0.078 Sum_probs=87.0
Q ss_pred ChhHHHHHHHHHHH-cCCCCCH-HHHHHHHHHhcC---------CCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHH
Q 041741 586 YGDEAVRLYKDMIA-SGVKPDD-ITFVAILTACSH---------SGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLG 653 (748)
Q Consensus 586 ~~~~a~~~~~~m~~-~~~~p~~-~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 653 (748)
..+.|+.+|.+... ..+.|+. ..|..+..++.. .....+|.++.++.. .+.| |......++.++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 34668888888882 1245655 456655554421 122344555544443 3333 3555666777777
Q ss_pred hcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--hHHHhHHHhhcCChHHHHH
Q 041741 654 RAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAP--YSLLANIYSSLGRWDDLRA 729 (748)
Q Consensus 654 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~ 729 (748)
-.|+++.|..+|++.. ..| .+..|......+...|+.++|.+.++++++++|....+ .......|+..+ .++|..
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 7777888888888775 444 45666666666777888888888888888888865544 333333455544 455555
Q ss_pred HH
Q 041741 730 VR 731 (748)
Q Consensus 730 ~~ 731 (748)
.|
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 44
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.89 E-value=0.037 Score=50.26 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=39.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---chHHHhHHHhhcCChHHHHH
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDPKNSA---PYSLLANIYSSLGRWDDLRA 729 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 729 (748)
++..|.+.|.+..|..-++.+++..|+.+. ++..++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 445578899999999999999999997553 58889999999999885543
No 207
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.89 E-value=0.26 Score=44.86 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=46.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---chHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDPKNSA---PYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
+...|.+.|.+..|..-++.+++..|+.+. ++..+..+|...|..++|...-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 455688889999999999999998876554 5777788899999999998887765443
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.87 E-value=0.024 Score=46.46 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=68.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCC----CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc---hHHHhHHH
Q 041741 647 CMIDCLGRAGHFHEAEMLIDEMP----CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAP---YSLLANIY 718 (748)
Q Consensus 647 ~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~ 718 (748)
.-+....+.|++++|.+.|+.+. ..| .+.....++.++...++++.|...+++.++++|.++.+ +...|-++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34555667899999998888884 222 45566678888889999999999999999999987754 66666667
Q ss_pred hhcCC---------------hHHHHHHHHHHHhcC
Q 041741 719 SSLGR---------------WDDLRAVRELMSENC 738 (748)
Q Consensus 719 ~~~g~---------------~~~A~~~~~~~~~~~ 738 (748)
..+.. ..+|...|+.+.++-
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 77665 667777777765543
No 209
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.86 E-value=0.0075 Score=57.86 Aligned_cols=129 Identities=13% Similarity=0.145 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHh-cCChHHHHHHHhhCC--CCCCHhHHHHHHHH
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGR-AGHFHEAEMLIDEMP--CKDDPVIWEVLLSS 683 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 683 (748)
.+|..+++..-+.+..+.|..+|.++... -..+...|...+..-.+ .++.+.|.++|+... .+.+...|..++..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888888899999999999522 23345666666666344 567777999999985 67789999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC---cchHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 684 CRLHANVRLAKRAAEELFRLDPKNS---APYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 684 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
+...|+.+.|..++++++..-|.+. ..+...+..-.+.|+.+....+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999877544 47888888889999999999999988764
No 210
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.85 E-value=0.028 Score=45.28 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=65.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHH
Q 041741 576 EMIHGYAQNGYGDEAVRLYKDMIASGVKPDD--ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCL 652 (748)
Q Consensus 576 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 652 (748)
.+..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..++++....+.-.+ +......++-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3556777889999999999999988866553 3566777888889999999999988854432211 122222345677
Q ss_pred HhcCChHHHHHHHhhC
Q 041741 653 GRAGHFHEAEMLIDEM 668 (748)
Q Consensus 653 ~~~g~~~~A~~~~~~~ 668 (748)
...|+.++|+..+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 8889999988877554
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.83 E-value=0.0012 Score=49.02 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CCcchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 675 VIWEVLLSSCRLHANVRLAKRAAEELFRL----DPK---NSAPYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 675 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
.++..+...+...|++++|+..+++++++ .++ -..++..+|.+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666777777777777777777764 222 23457778888888888888888877654
No 212
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.78 E-value=0.18 Score=47.13 Aligned_cols=57 Identities=9% Similarity=-0.042 Sum_probs=32.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHH-H---HHHHHHhhcCCCCchhHHHHHHHHHHh
Q 041741 476 MIAGLSLNSLDIEAFMFFKQMRQNEMYPTQF-S---FATVLSSCAKLSSSFQGRQVHAQIEKD 534 (748)
Q Consensus 476 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 534 (748)
....+...|++++|.+.|+++... .|+.. . .-.+..++.+.++++.|...++.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344455667777777777777664 23221 1 123445556666666666666666655
No 213
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.76 E-value=0.024 Score=43.79 Aligned_cols=78 Identities=15% Similarity=0.023 Sum_probs=61.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHhhcCCCC--------chhHHHHHHHHHHhCCCCchHHHHH
Q 041741 475 SMIAGLSLNSLDIEAFMFFKQMRQNEM-YPTQFSFATVLSSCAKLSS--------SFQGRQVHAQIEKDGYVNDIFVGSA 545 (748)
Q Consensus 475 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~ 545 (748)
..|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++..- ......+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345566667999999999999999999 8999999999988765432 2345677888888888888888888
Q ss_pred HHHHHHh
Q 041741 546 LIEMYCK 552 (748)
Q Consensus 546 l~~~~~~ 552 (748)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8877665
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.75 E-value=0.0087 Score=52.47 Aligned_cols=96 Identities=11% Similarity=0.128 Sum_probs=68.7
Q ss_pred HHhhccC--CCCCchhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccc-------------
Q 041741 74 YKLFDEM--PERNVVSWNNLISALVRN-----GLEEKALSVYNKMSNEGFVPTHITLASVFKASTAL------------- 133 (748)
Q Consensus 74 ~~~~~~~--~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 133 (748)
...|+.. ...|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.|+..+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 345666777777776643 44555566777777778888888888888776543
Q ss_pred ---cCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcC
Q 041741 134 ---LDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCG 169 (748)
Q Consensus 134 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 169 (748)
.+.+-|.+++++|...|+-||..++..+++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 234668899999999999999999999999886644
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.015 Score=56.07 Aligned_cols=138 Identities=12% Similarity=0.045 Sum_probs=101.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcC
Q 041741 577 MIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAG 656 (748)
Q Consensus 577 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 656 (748)
-.+.|.+.|++..|..-|++.+.. -... ..-+.++.... . ..-...+..++-++.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~~~-----------~~~~~ee~~~~-~--------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LEYR-----------RSFDEEEQKKA-E--------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hhcc-----------ccCCHHHHHHH-H--------HHHHHHhhHHHHHHHhhh
Confidence 456778888888888888876652 1111 00111111111 1 111244677899999999
Q ss_pred ChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHH-HHHHHH
Q 041741 657 HFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDL-RAVREL 733 (748)
Q Consensus 657 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~ 733 (748)
++.+|+....... .+++...+..-..++...|+++.|...++++++++|+|-.+...|..+-.+...+.+. .+.|..
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998875 4567778878888999999999999999999999999999999999988888776655 678888
Q ss_pred HHh
Q 041741 734 MSE 736 (748)
Q Consensus 734 ~~~ 736 (748)
|-.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 865
No 216
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.69 E-value=0.012 Score=46.39 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=73.2
Q ss_pred HHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----cchHHHhHHHhhcC
Q 041741 649 IDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS----APYSLLANIYSSLG 722 (748)
Q Consensus 649 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g 722 (748)
+-++...|+.+.|++.|.+.. .+..+..|+.-...++-+|++++|..-+.+++++..... .++...+.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 456778899999999988774 455788889999999999999999999999999754332 35778888899999
Q ss_pred ChHHHHHHHHHHHhcCC
Q 041741 723 RWDDLRAVRELMSENCI 739 (748)
Q Consensus 723 ~~~~A~~~~~~~~~~~~ 739 (748)
+.+.|+.-|+..-+-|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999998887766554
No 217
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.006 Score=58.65 Aligned_cols=90 Identities=16% Similarity=0.105 Sum_probs=71.3
Q ss_pred HHHHHhcCChHHHHHHHhhCC--------CCC---------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcch
Q 041741 649 IDCLGRAGHFHEAEMLIDEMP--------CKD---------DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPY 711 (748)
Q Consensus 649 ~~~~~~~g~~~~A~~~~~~~~--------~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 711 (748)
+..|.+.|++..|...|++.. .++ -...+..+..++.+.+++..|++...++++++|+|+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 445666666666666665532 111 123556777788999999999999999999999999999
Q ss_pred HHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 712 SLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
+..+.+|...|+++.|+..|+++.+-.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999986643
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.61 E-value=0.0045 Score=58.98 Aligned_cols=221 Identities=13% Similarity=0.037 Sum_probs=139.7
Q ss_pred HhhcCCCCchhHHHHHHHHHHhCCCC---chHHHHHHHHHHHhcCCHHHHHHHhhhcC-------C--CCHHHHHHHHHH
Q 041741 513 SSCAKLSSSFQGRQVHAQIEKDGYVN---DIFVGSALIEMYCKCGDIYGARQFFDMMH-------G--KNTVTWNEMIHG 580 (748)
Q Consensus 513 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~~~l~~~ 580 (748)
.-+|+.|+......+|+...+.|..- -..+|..|..+|.-.+++++|.++-..-. . -...+-..|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 34788999999999999999887432 24567788888888899999998754211 0 122233445556
Q ss_pred HHHcCChhHHHHHHHH----HHHcCCCC-CHHHHHHHHHHhcCCCC--------------------hHHHHHHHHHhh--
Q 041741 581 YAQNGYGDEAVRLYKD----MIASGVKP-DDITFVAILTACSHSGL--------------------VDVGVEIFNSMQ-- 633 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~----m~~~~~~p-~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~-- 633 (748)
+.-.|.+++|+....+ ..+.|-.. ....+..+...|...|+ ++.|.++|..-.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777654433 22222111 12344555555544332 233444443211
Q ss_pred -hhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-----CC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041741 634 -LDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-----CK---DDPVIWEVLLSSCRLHANVRLAKRAAEELFRL 703 (748)
Q Consensus 634 -~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 703 (748)
.+.|-... -..|..|+..|.-.|+++.|+..-+.-. +. .....+..+.+++.-.|+++.|.+.|+..+.+
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11111111 2345667777777899999987654321 11 12345667788888899999999999987764
Q ss_pred ----C--CCCCcchHHHhHHHhhcCChHHHHHHHHH
Q 041741 704 ----D--PKNSAPYSLLANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 704 ----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (748)
. ...++..++|++.|.-..++++|+.+..+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2 22556789999999999999999998775
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.59 E-value=0.76 Score=44.31 Aligned_cols=277 Identities=14% Similarity=0.071 Sum_probs=135.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHh--hccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHH
Q 041741 382 SENHKEAIKLFREMQFRGVKPDRTTLAIILSSC--AAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAE 459 (748)
Q Consensus 382 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 459 (748)
.||-..|.+.-.+..+. +..|...+..++.+. .-.|+.+.+.+-|+.|....-. ...-...|.-.-.+.|+.+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEt-RllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPET-RLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHH-HHHhHHHHHHHHHhcccHHHHH
Confidence 34555555444433322 333444444444332 2345555555555555431100 0011122222233456666555
Q ss_pred HHHhhCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCHH--HHHHHHHhhc---CCCCchhHHHHHHH
Q 041741 460 RVFHRIPEL---DIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNE-MYPTQF--SFATVLSSCA---KLSSSFQGRQVHAQ 530 (748)
Q Consensus 460 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~l~~~~~---~~~~~~~a~~~~~~ 530 (748)
..-++.-.. -...+.+.+...+..|+++.|+++++.-.... +.++.. .-..|+.+-. -..+...|...-.+
T Consensus 175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 555544432 23356777888888888888888887765532 333332 1222332211 11233334433333
Q ss_pred HHHhCCCCchH-HHHHHHHHHHhcCCHHHHHHHhhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCH
Q 041741 531 IEKDGYVNDIF-VGSALIEMYCKCGDIYGARQFFDMMHG--KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIAS-GVKPDD 606 (748)
Q Consensus 531 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~ 606 (748)
..+ ..|+.. .--.-..++.+.|++.++-.+++.+-+ |.+..+.. -.+.+.| +.++.-+++.... .++||.
T Consensus 255 a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~g--dta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 255 ANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSG--DTALDRLKRAKKLESLKPNN 328 (531)
T ss_pred Hhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCC--CcHHHHHHHHHHHHhcCccc
Confidence 333 233321 111234566677777777777776654 33333322 2223333 3333333333221 134443
Q ss_pred -HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhc-CChHHHHHHHhhCC
Q 041741 607 -ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRA-GHFHEAEMLIDEMP 669 (748)
Q Consensus 607 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 669 (748)
.+...+.++-...|++..|..--+... ...|....|..|.++-... ||-.++..++.+..
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 455566666667777777666655542 4467777777777665443 77777777766654
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.56 E-value=0.049 Score=49.50 Aligned_cols=142 Identities=16% Similarity=0.119 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChh-HHHHHH
Q 041741 574 WNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD---ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILD-HYTCMI 649 (748)
Q Consensus 574 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~ 649 (748)
+-..+..+...|++.+|...|+++.... +-+. ...-.++.++.+.|+++.|...+++....+.-.|... .+-.++
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3344455566666666666666666542 1111 2344555566666666666666666654444444321 111111
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-----------------hH
Q 041741 650 DCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAP-----------------YS 712 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------------~~ 712 (748)
.++... ..... ......+...+|...++.++...|+++-+ -.
T Consensus 87 ~~~~~~--~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 87 LSYYKQ--IPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHHHHH--HHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--Cccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 00000 01122334556777777777777765543 45
Q ss_pred HHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 713 LLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
..+..|.+.|.+..|...++.+.+.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5788899999999999999988764
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.56 E-value=0.0051 Score=52.62 Aligned_cols=68 Identities=24% Similarity=0.240 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh-----cCCCCCC
Q 041741 676 IWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE-----NCIVKDP 743 (748)
Q Consensus 676 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 743 (748)
.+..++..+...|++++|...++.++..+|-+...+..+..+|...|+..+|.++|+.+++ -|+.|.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 3445666777899999999999999999999999999999999999999999999998864 3665554
No 222
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.68 Score=45.03 Aligned_cols=226 Identities=12% Similarity=0.018 Sum_probs=125.3
Q ss_pred CCHHHHHHHH-HhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHH---------
Q 041741 503 PTQFSFATVL-SSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTV--------- 572 (748)
Q Consensus 503 p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------- 572 (748)
|.-.++..+- .++...++.+.|...-....+.... +....-.-..++.-.++.+.|...|++...-++.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM 244 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh
Confidence 3334444332 3345667777777666555554311 1111111112233456777777777776642221
Q ss_pred ------HHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-h
Q 041741 573 ------TWNEMIHGYAQNGYGDEAVRLYKDMIAS---GVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-L 642 (748)
Q Consensus 573 ------~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~ 642 (748)
.+..-.+-..+.|++..|.+.+.+.+.. +..|+...|.....+..+.|+..+|+.-.+... .+.|. .
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syi 321 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYI 321 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHH
Confidence 1222233456778888888888888763 233344456666667778888888888877653 34443 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC-CCCC---HhHH---------------HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041741 643 DHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDD---PVIW---------------EVLLSSCRLHANVRLAKRAAEELFRL 703 (748)
Q Consensus 643 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~---------------~~l~~~~~~~~~~~~a~~~~~~~~~~ 703 (748)
..+..-+.++...++|++|++-+++.. ...+ ..++ ..++..-....+.+--...-+.++..
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~ 401 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVH 401 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHh
Confidence 344455667777788888888877653 1111 1122 22222222223333444444556666
Q ss_pred CCCCCcc--------hHHHhHHHhhcCChHHHHHHHH
Q 041741 704 DPKNSAP--------YSLLANIYSSLGRWDDLRAVRE 732 (748)
Q Consensus 704 ~p~~~~~--------~~~l~~~~~~~g~~~~A~~~~~ 732 (748)
.|+-+.. ....+.+|...+|.+++.++..
T Consensus 402 Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 402 HPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred CCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 7753222 5667888888888888877653
No 223
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.49 E-value=0.042 Score=48.38 Aligned_cols=90 Identities=21% Similarity=0.315 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC----------------CChHHHH
Q 041741 568 GKNTVTWNEMIHGYAQ-----NGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHS----------------GLVDVGV 626 (748)
Q Consensus 568 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~A~ 626 (748)
..+-.+|..++..+.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566666667766654 466677778888999999999999999999887432 1346789
Q ss_pred HHHHHhhhhhCCCCChhHHHHHHHHHHhcCCh
Q 041741 627 EIFNSMQLDHGVEPILDHYTCMIDCLGRAGHF 658 (748)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 658 (748)
.++++| +..|+.||.+++..+++++++.+..
T Consensus 124 ~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQM-ENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHH-HHcCCCCcHHHHHHHHHHhccccHH
Confidence 999999 8999999999999999999877653
No 224
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.076 Score=49.38 Aligned_cols=108 Identities=13% Similarity=0.015 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhhCC-CCC-CHhHH
Q 041741 603 KPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAG---HFHEAEMLIDEMP-CKD-DPVIW 677 (748)
Q Consensus 603 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~~-~~~~~ 677 (748)
+-|...|..|...|...|+.+.|...|.+..+-.| ++...+..+++++.... +..++..+++++. ..| +....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 55667899999999999999999999988854333 23455667777766543 4567888888885 334 56666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchH
Q 041741 678 EVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYS 712 (748)
Q Consensus 678 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 712 (748)
..|...+...|++.+|...++.++...|.+.....
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 66777788999999999999999998886655433
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.022 Score=52.09 Aligned_cols=102 Identities=16% Similarity=0.125 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCCCHhHHHHHH
Q 041741 608 TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLIDEMP-----CKDDPVIWEVLL 681 (748)
Q Consensus 608 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~ 681 (748)
.|+..+. +.+.|++..|...|....+.+.-.+ ....+-.|++++...|++++|...|..+. .+..|..+..+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 3445567777777776654332111 13334457777777777777777776653 223466677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 041741 682 SSCRLHANVRLAKRAAEELFRLDPKNSAP 710 (748)
Q Consensus 682 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 710 (748)
.+....|+.++|...++++++..|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77777777777777777777777765443
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=1.8 Score=45.80 Aligned_cols=108 Identities=13% Similarity=0.157 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRL 686 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 686 (748)
.+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-.++-++.. +|..|.-....|.+
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLK 756 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHh
Confidence 345555566677788888888765552 4777777777888888888888888777755 26666667788888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHH
Q 041741 687 HANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAV 730 (748)
Q Consensus 687 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 730 (748)
.|+.++|..++-+.-.+. ....+|...|++.+|.+.
T Consensus 757 ~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred cccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHH
Confidence 888888877765432211 577788888888887764
No 227
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.31 E-value=0.26 Score=49.27 Aligned_cols=120 Identities=11% Similarity=0.119 Sum_probs=79.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCC--HhHHHHHHHHHH
Q 041741 610 VAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDD--PVIWEVLLSSCR 685 (748)
Q Consensus 610 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~--~~~~~~l~~~~~ 685 (748)
..+..++.+.|+.++|++.++.+.+.............|+++|...+.+.++..++.+-. .-|. ...|...+-.++
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 456667788899999999999996555433345567789999999999999999988875 1233 344555444444
Q ss_pred hcCC---------------HHHHHHHHHHHHhcCCCCCcchHHHh------HHHhhcCChHHHHHH
Q 041741 686 LHAN---------------VRLAKRAAEELFRLDPKNSAPYSLLA------NIYSSLGRWDDLRAV 730 (748)
Q Consensus 686 ~~~~---------------~~~a~~~~~~~~~~~p~~~~~~~~l~------~~~~~~g~~~~A~~~ 730 (748)
..+| -..|.+.+.++++.+|.-|..+..+- .-+.+.|| .||+.|
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaY 407 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAY 407 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHH
Confidence 4443 13467899999999997554322221 12445565 555543
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.29 E-value=0.025 Score=51.76 Aligned_cols=97 Identities=18% Similarity=0.120 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC-CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---cchHHHh
Q 041741 644 HYTCMIDCLGRAGHFHEAEMLIDEMP-CKD----DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS---APYSLLA 715 (748)
Q Consensus 644 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 715 (748)
.|+.-. -+.+.|++.+|...|.... .-| .+....-|+.++...|++++|...|..+.+-.|+++ .++.-|+
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444 4556788999999988774 112 244445588889999999999999999999888765 4588999
Q ss_pred HHHhhcCChHHHHHHHHHHHhcCCCC
Q 041741 716 NIYSSLGRWDDLRAVRELMSENCIVK 741 (748)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 741 (748)
.+..+.|+.++|..+|++..++-+.-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999987765543
No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.27 E-value=1.3 Score=43.57 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=62.3
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHhccCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 041741 269 EADLHLSNSLLDMYAKNGDMDSAEVIFSNLPERSV---VSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINML 345 (748)
Q Consensus 269 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 345 (748)
+.+...|-.|+.-+...+..+...+.++++..|-+ .+|...+++-....++..+..+|.+....... ...|...+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 56778999999999999999999999999998755 37888899888899999999999999877554 33444444
Q ss_pred H
Q 041741 346 V 346 (748)
Q Consensus 346 ~ 346 (748)
.
T Consensus 117 ~ 117 (660)
T COG5107 117 E 117 (660)
T ss_pred H
Confidence 4
No 230
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.13 E-value=2.7 Score=45.72 Aligned_cols=56 Identities=5% Similarity=-0.131 Sum_probs=29.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 041741 444 GLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNE 500 (748)
Q Consensus 444 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 500 (748)
.....+.+.+++....+.+..- ..+...-.....+....|+.++|....+.+=..|
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 3344445566666666633222 2344444555666666777666665555554433
No 231
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.98 E-value=0.024 Score=48.54 Aligned_cols=90 Identities=13% Similarity=0.178 Sum_probs=53.6
Q ss_pred HHHHHhcCChHHHHHHHhhCC--CCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc
Q 041741 649 IDCLGRAGHFHEAEMLIDEMP--CKDD-----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSL 721 (748)
Q Consensus 649 ~~~~~~~g~~~~A~~~~~~~~--~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 721 (748)
+.-+.+.|++++|..-|.... .++. ...|..-..++.+.+.++.|+.-..++++++|.+..++...+.+|-+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 344555666666666655543 2222 222333333455566677777777777777776666666667777777
Q ss_pred CChHHHHHHHHHHHhcC
Q 041741 722 GRWDDLRAVRELMSENC 738 (748)
Q Consensus 722 g~~~~A~~~~~~~~~~~ 738 (748)
.++++|++-|+++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 77777777777665543
No 232
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.97 E-value=2.5 Score=44.14 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=58.8
Q ss_pred cCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHhhccCChHHHHHH
Q 041741 351 SGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPD----RTTLAIILSSCAAMGILESGKQV 426 (748)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~ 426 (748)
.|.+++|++++-.+...| ..+..+.+.|||-.+.++++.- |-..| ...+..+...+.....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrD-----LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD-----LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhh-----hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666665554433 2344455556665555554321 11111 12344444445555555555555
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 041741 427 HAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFF 493 (748)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 493 (748)
+..-... ...+.++....++++-+.+...+++ +......+..++...|.-++|.+.+
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 4432211 1234445555555555555555544 2233444455555555555555444
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.75 Score=41.31 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC-------CCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCcchH
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMP-------CKDDP-VIWEVLLSSCRLHANVRLAKRAAEELFRL----DPKNSAPYS 712 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~ 712 (748)
+....+.|++...+++|-..+.+-. .-|++ ..+...+-.+....|+..|+..++..-+. .|++..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 4445566677777777666555442 11222 22334444455566777777777765443 455556666
Q ss_pred HHhHHHhhcCChHHHHHHH
Q 041741 713 LLANIYSSLGRWDDLRAVR 731 (748)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~ 731 (748)
.|...| ..||.+++-.++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 666555 456666665543
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.94 E-value=0.069 Score=50.44 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=63.2
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhC-------CCCCC-----Hh
Q 041741 612 ILTACSHSGLVDVGVEIFNSMQLDHGVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEM-------PCKDD-----PV 675 (748)
Q Consensus 612 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-----~~ 675 (748)
+..++...+.++++++.|+....-.....| ...+-.+...+.+..|+++|.-+..+. ..+.- ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 444555555666666666655322222222 234556666666666666655443322 11111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCcchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 676 IWEVLLSSCRLHANVRLAKRAAEELFRLD------PKNSAPYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 676 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
.+..+.-+++..|....|.+..+++.++. |-..-.+..++++|...|+.|.|..-|+.+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22233334566666666666666666542 1122235566666767777666666666543
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.35 Score=44.94 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=56.5
Q ss_pred hcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHH---HHHHHHHhcCCHHH
Q 041741 616 CSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWE---VLLSSCRLHANVRL 692 (748)
Q Consensus 616 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~ 692 (748)
....|++.+|..+|....... .-+......++++|...|+.+.|..++..++..-...-+. .-+..+.+..+..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345556666666655553211 1113344456666666666666666666665222111111 12222222222222
Q ss_pred HHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 693 AKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 693 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
. ..++.....+|+|...-..|+..+...|+.++|.+.+=.+.
T Consensus 222 ~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 I-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred H-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 12333344566666666666666666666666666444443
No 236
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.88 E-value=0.022 Score=42.17 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC-----CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041741 644 HYTCMIDCLGRAGHFHEAEMLIDEMP-----CKDD----PVIWEVLLSSCRLHANVRLAKRAAEELFRL 703 (748)
Q Consensus 644 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 703 (748)
++..++.+|...|++++|+..+++.. .+++ ..++..++..+...|++++|.+.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45556666666666666666655542 1111 334555666677777777777777776654
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.81 E-value=1.7 Score=40.78 Aligned_cols=190 Identities=18% Similarity=0.163 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 041741 542 VGSALIEMYCKCGDIYGARQFFDMMH-----GKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILT-A 615 (748)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-~ 615 (748)
........+...+++..+...+.... ......+......+...+++..+...+.........+. ........ .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHH
Confidence 33344444445555555554444432 12333344444444555555555555555555322221 11111112 4
Q ss_pred hcCCCChHHHHHHHHHhhhhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHhhCC-C-CC-CHhHHHHHHHHHHhcC
Q 041741 616 CSHSGLVDVGVEIFNSMQLDHGVEP----ILDHYTCMIDCLGRAGHFHEAEMLIDEMP-C-KD-DPVIWEVLLSSCRLHA 688 (748)
Q Consensus 616 ~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~-~~~~~~~l~~~~~~~~ 688 (748)
+...|+++.|...+++.. . ..| ....+......+...++.++|...+.+.. . +. ....+..+...+...+
T Consensus 140 ~~~~~~~~~a~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 140 LYELGDYEEALELYEKAL-E--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHcCCHHHHHHHHHHHH-h--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 555555566555555552 1 122 12222233333444555566665555553 1 12 2344444555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 689 NVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 689 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
+++.|...+..+....|........++..+...|..+++...+++..
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 56666666666666555444445555555554455555555555443
No 238
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.81 E-value=0.024 Score=33.62 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041741 675 VIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN 707 (748)
Q Consensus 675 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 707 (748)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345666777777788888888888888877754
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.67 E-value=0.1 Score=44.47 Aligned_cols=72 Identities=17% Similarity=0.306 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhh----hhhCCCCChhHH
Q 041741 573 TWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQ----LDHGVEPILDHY 645 (748)
Q Consensus 573 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~ 645 (748)
....++..+...|+++.|+.+++++.... +-+...|..++.+|...|+...|...|+++. .+.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34456666777888888888888888763 4566678888888888888888888877653 245777776543
No 240
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.59 E-value=0.023 Score=33.69 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041741 675 VIWEVLLSSCRLHANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 675 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 706 (748)
..|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666777777788888888888888888775
No 241
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=4.3 Score=43.71 Aligned_cols=174 Identities=13% Similarity=0.080 Sum_probs=91.9
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 041741 277 SLLDMYAKNGDMDSAEVIFSNLPERSV---VSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGD 353 (748)
Q Consensus 277 ~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 353 (748)
.-+....+...++.|..+-+.-.-+.. .........+.+.|++++|...|-+-... +.| ..++.-|.....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 344555555666666665544322111 12333344556677777777776554432 222 123333334444
Q ss_pred HHHHHHHhccCCC---CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHH
Q 041741 354 IKTGREMFDSMPS---PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAAS 430 (748)
Q Consensus 354 ~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 430 (748)
+.+-...++.+.+ .+...-..|+.+|.+.++.++..++.+..- .|.. ..-+...+..|.+.+-.+.|..+-...
T Consensus 413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 4444444444433 445556677888888888887777766543 2222 112344556666666666665554333
Q ss_pred HhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 041741 431 LKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPE 467 (748)
Q Consensus 431 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 467 (748)
.. ...+ +--.+...+++++|.+.+..++-
T Consensus 490 ~~-----he~v---l~ille~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 490 KK-----HEWV---LDILLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred cc-----CHHH---HHHHHHHhcCHHHHHHHHhcCCH
Confidence 22 1111 22234456778888888887763
No 242
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.56 E-value=3.5 Score=42.65 Aligned_cols=181 Identities=15% Similarity=0.094 Sum_probs=116.6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041741 539 DIFVGSALIEMYCKCGDIYGARQFFDMMHGK---NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTA 615 (748)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 615 (748)
....|...+..-.+.|+++.+.-+|+.+.-| -...|-..+.-....|+.+-|..++....+-.++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456667777777888888888888887654 2334555555555558888888887777665433333222222223
Q ss_pred hcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHH---HHHhhCC-CCCCHhHHHH----HHH-HHH
Q 041741 616 CSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAE---MLIDEMP-CKDDPVIWEV----LLS-SCR 685 (748)
Q Consensus 616 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~~----l~~-~~~ 685 (748)
+...|+++.|..+++.+..+. |+ +..-..-+....+.|+.+.+. .++.... .+.+...... ... .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 456789999999999885332 55 233334456667888888888 5554443 3333332222 222 244
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcC
Q 041741 686 LHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLG 722 (748)
Q Consensus 686 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 722 (748)
..++.+.|...+.++.+..|++-..+..+.+.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5678899999999999999988888888888877665
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=1.1 Score=41.91 Aligned_cols=150 Identities=16% Similarity=0.142 Sum_probs=96.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCCh
Q 041741 579 HGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHF 658 (748)
Q Consensus 579 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 658 (748)
......|++.+|...|+...... +-+...-..+..+|...|+.+.|..++..+-.+. -.........-++.+.++...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 44566778888888888877752 3333455667778888888888888887762111 011111122345666666666
Q ss_pred HHHHHHHhhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCcchHHHhHHHhhcCChHHHHHH
Q 041741 659 HEAEMLIDEMPCKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLD--PKNSAPYSLLANIYSSLGRWDDLRAV 730 (748)
Q Consensus 659 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 730 (748)
.+...+-++....| |...-..+...+...|+.+.|.+.+-.+++.+ -+|..+-..|..++...|..+.+...
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~ 294 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLA 294 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHH
Confidence 66666666665445 56666677777888888888888877777754 34667777777777777755444433
No 244
>PRK15331 chaperone protein SicA; Provisional
Probab=95.53 E-value=0.28 Score=41.45 Aligned_cols=86 Identities=8% Similarity=0.009 Sum_probs=37.9
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHH
Q 041741 581 YAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHE 660 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 660 (748)
+...|++++|..+|.-+.-.+ .-+..-+..|..+|-..+.+++|+..|.....-.. -|+..+-..+.++...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHHhCCHHH
Confidence 334555555555555544432 12222333444444445555555555544321111 112223335555555555555
Q ss_pred HHHHHhhCC
Q 041741 661 AEMLIDEMP 669 (748)
Q Consensus 661 A~~~~~~~~ 669 (748)
|..-|+...
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 555554443
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=95.44 E-value=0.51 Score=47.24 Aligned_cols=145 Identities=13% Similarity=0.049 Sum_probs=102.7
Q ss_pred CHHHHHHHhhhcC---CCC---HHHHHHHHHHHHHc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 041741 555 DIYGARQFFDMMH---GKN---TVTWNEMIHGYAQN---------GYGDEAVRLYKDMIASGVKPDDITFVAILTACSHS 619 (748)
Q Consensus 555 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 619 (748)
..+.|..+|.+.. .-| ...|..+..++... .+..+|.++.++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4678888999887 433 55666666655432 23456888888888875 66777888888888888
Q ss_pred CChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhC-CCCCC---HhHHHHHHHHHHhcCCHHHHH
Q 041741 620 GLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEM-PCKDD---PVIWEVLLSSCRLHANVRLAK 694 (748)
Q Consensus 620 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~ 694 (748)
++++.|...|++.. .+.|+ ...+...+..+.-+|+.++|.+.+++. ...|. ..+....+..|... -.+.|.
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999885 66787 556667777778899999999999984 45554 23344444456554 567778
Q ss_pred HHHHHHHhcC
Q 041741 695 RAAEELFRLD 704 (748)
Q Consensus 695 ~~~~~~~~~~ 704 (748)
..|-+-.+.+
T Consensus 428 ~~~~~~~~~~ 437 (458)
T PRK11906 428 KLYYKETESE 437 (458)
T ss_pred HHHhhccccc
Confidence 8777644433
No 246
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.41 E-value=0.51 Score=47.16 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041741 539 DIFVGSALIEMYCKCGDIYGARQFFDMMHG--KNT----VTWNEMIHGYAQNGYGDEAVRLYKDMIAS 600 (748)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 600 (748)
+...++.+..+|.+.|++++|...|++..+ |+. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666666665442 332 23666666666666666666666666663
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.28 E-value=3 Score=40.16 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=49.0
Q ss_pred HHHHHHHhhcCCCCchh---HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHHHHHHHHHH
Q 041741 507 SFATVLSSCAKLSSSFQ---GRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGK---NTVTWNEMIHG 580 (748)
Q Consensus 507 ~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~ 580 (748)
++..++.++...+..+. |..+++.+.... +-.+.++-.-+..+.+.++.+.+.+.+..|... ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 45556666666655443 444444443332 222333334455555567777777777766531 22333333333
Q ss_pred HHH--cCChhHHHHHHHHHHHcCCCCCH
Q 041741 581 YAQ--NGYGDEAVRLYKDMIASGVKPDD 606 (748)
Q Consensus 581 ~~~--~~~~~~a~~~~~~m~~~~~~p~~ 606 (748)
+.. ......+...++.+....+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 311 12334566666666655555554
No 248
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.25 E-value=2.1 Score=43.10 Aligned_cols=150 Identities=10% Similarity=0.004 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC--hh
Q 041741 569 KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKP---DDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI--LD 643 (748)
Q Consensus 569 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~ 643 (748)
....+|..++..+.+.|+++.|...+.++...+..+ .+.....-.......|+..+|+..++..... ....+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 355678888888899999999999888888753221 2223333455566778888888888777431 11111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HhhCCCCCCHhHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCcchHHHhH
Q 041741 644 HYTCMIDCLGRAGHFHEAEML-IDEMPCKDDPVIWEVLLSSCRLH------ANVRLAKRAAEELFRLDPKNSAPYSLLAN 716 (748)
Q Consensus 644 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 716 (748)
....+...+.. ..+..... ........-...+..+...+... ++.+.+...++.+.+..|....++..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000012222233333333 78899999999999999999899999988
Q ss_pred HHhhc
Q 041741 717 IYSSL 721 (748)
Q Consensus 717 ~~~~~ 721 (748)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 88665
No 249
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.21 E-value=1.2 Score=35.82 Aligned_cols=141 Identities=13% Similarity=0.156 Sum_probs=82.0
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHH
Q 041741 581 YAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHE 660 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 660 (748)
+.-.|..++..++..+.... .+..-++-++--....-+-+...+.++.+-+-+.+.| -.....++.+|.+.|...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~~s- 86 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNKLS- 86 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcchH-
Confidence 44568888888888888774 3333344444433344455555666666532222222 123445666666655433
Q ss_pred HHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCCC
Q 041741 661 AEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCIV 740 (748)
Q Consensus 661 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 740 (748)
......+......|.-+.-..++..+...+..+|..+.-++.+|.+.|+..+|-++++++=++|++
T Consensus 87 --------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 --------------EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred --------------HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 233345566777888888888888877655558899999999999999999999999998888764
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.96 E-value=0.54 Score=38.80 Aligned_cols=118 Identities=17% Similarity=0.146 Sum_probs=60.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHH
Q 041741 576 EMIHGYAQNGYGDEAVRLYKDMIASGVKPDD---ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCL 652 (748)
Q Consensus 576 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 652 (748)
.-.....+.|++++|.+.|+.+... .+... .....++.+|.+.+++++|+..+++.++.+.-.|++. |.....++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL 92 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGL 92 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHH
Confidence 3344455666666676666666664 22222 2344556666666666666666666654444444432 22222222
Q ss_pred HhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 041741 653 GRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAP 710 (748)
Q Consensus 653 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 710 (748)
..-...+ ..+..+. ..=+..+....|...++.+++..|++.-+
T Consensus 93 ~~~~~~~---~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 93 SYYEQDE---GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHhh---hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 2211111 1111111 11111223568888999999999976543
No 251
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.84 E-value=0.34 Score=39.49 Aligned_cols=49 Identities=8% Similarity=0.183 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHH
Q 041741 602 VKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMID 650 (748)
Q Consensus 602 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 650 (748)
..|+..++.+++.+|+..|++..|+.+.+.....++++.+...|..|.+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455555555555555555555555555555445554444444444443
No 252
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.69 E-value=0.18 Score=41.48 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=34.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 686 LHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 686 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
..++.+++..++..+.-+.|+.+..-..-++++...|+|++|.++++++.+++
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35666666666666666666666666666666666666666666666654433
No 253
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.69 E-value=6.3 Score=47.92 Aligned_cols=311 Identities=11% Similarity=-0.027 Sum_probs=168.0
Q ss_pred HHhhccCChHHHHHHHHHHHhh--cCCchhHHHHHHHHHHHhcCChHHHHHHHhh-CCCCCcchHHHHHHHHHhCCCchH
Q 041741 412 SSCAAMGILESGKQVHAASLKT--ASHIDNYVASGLIGIYSKCQRNELAERVFHR-IPELDIVCWNSMIAGLSLNSLDIE 488 (748)
Q Consensus 412 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~ 488 (748)
.+-.+.+.+..|...++.-... ........+..+...|...++++...-+... ..+++ ...-|......|++..
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWAD 1467 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHH
Confidence 3444556666666665552110 1111223344444588888888877766663 33332 2234455567899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC
Q 041741 489 AFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG 568 (748)
Q Consensus 489 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (748)
|...|+.+.+.+ ++...+++-++......+.+....-..+-.....-+-....++.=+.+--+.++++.....+. .
T Consensus 1468 a~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1468 AAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 999999998664 333667777777777777777666544444333212122233333445567777777777665 3
Q ss_pred CCHHHHHHH--HHHHHHcCChh--HHHHHHHHHHHcCCCCCH---------HHHHHHHHHhcCCCChHHHHHHHHHhhhh
Q 041741 569 KNTVTWNEM--IHGYAQNGYGD--EAVRLYKDMIASGVKPDD---------ITFVAILTACSHSGLVDVGVEIFNSMQLD 635 (748)
Q Consensus 569 ~~~~~~~~l--~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 635 (748)
.+..+|... +....+..+-+ .-.+..+.+++.-+.|-. ..|..++...... +.+.-.+. .
T Consensus 1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~------l 1616 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEE------L 1616 (2382)
T ss_pred ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHH------h
Confidence 444455543 33333332222 222344444332111111 1233333222111 11111111 1
Q ss_pred hCCCCChhHH---HHHHHHHHhcCChHHHHHHHhhC---------C---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041741 636 HGVEPILDHY---TCMIDCLGRAGHFHEAEMLIDEM---------P---CKDDPVIWEVLLSSCRLHANVRLAKRAAEEL 700 (748)
Q Consensus 636 ~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~---------~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 700 (748)
.++.++..+. .....-+.+.+..-.+.+.+-.+ . ...-..+|...+...+..|.++.|...+-++
T Consensus 1617 ~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1617 KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 1233332111 01112222222222233222111 1 1123567888899999999999999999999
Q ss_pred HhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 701 FRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 701 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
.+.. -+.++...|+..+..|+...|+.++++..+..
T Consensus 1697 ~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1697 KESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8877 46899999999999999999999999987643
No 254
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.66 E-value=2.3 Score=37.55 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHH
Q 041741 570 NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMI 649 (748)
Q Consensus 570 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 649 (748)
-+..||-|.--+...|+++.|.+.|+...+.+..-+-...|. .-++.-.|++.-|.+-+.+.-..-...|-...| .
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW---L 173 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW---L 173 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHHHhcCCCChHHHHH---H
Confidence 355788888888899999999999999998542222222222 224456688888887766553222222222222 2
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CcchHHHhHHHhhcC
Q 041741 650 DCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN-------SAPYSLLANIYSSLG 722 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 722 (748)
..-.+.-++.+|..-+.+-..+.+...|...+-.+.- |... -+..++++.+...++ ..++..|++-|...|
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 2223445677777654433224455555444333211 2211 133344444433333 347999999999999
Q ss_pred ChHHHHHHHHHHHhc
Q 041741 723 RWDDLRAVRELMSEN 737 (748)
Q Consensus 723 ~~~~A~~~~~~~~~~ 737 (748)
+.++|...|+.....
T Consensus 252 ~~~~A~~LfKLaian 266 (297)
T COG4785 252 DLDEATALFKLAVAN 266 (297)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999976553
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.63 E-value=0.09 Score=41.66 Aligned_cols=54 Identities=13% Similarity=0.042 Sum_probs=51.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 683 SCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 683 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.+...|+.+.|++.|.+++.+-|+++++|...+.++.-+|+.++|+.-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 466789999999999999999999999999999999999999999999998876
No 256
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.60 E-value=0.18 Score=42.34 Aligned_cols=73 Identities=22% Similarity=0.067 Sum_probs=43.6
Q ss_pred HhcCChHHHHHHHhhCC-CCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChH
Q 041741 653 GRAGHFHEAEMLIDEMP-CKDDPV-IWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWD 725 (748)
Q Consensus 653 ~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 725 (748)
.+.++.+++..++..+. ..|... .-..-...+...|++.+|..+++.+.+..|..+..-..++.++...||.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 35566777777766664 334322 22223334556677777777777766666666666666666666666543
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.49 E-value=0.36 Score=50.24 Aligned_cols=161 Identities=13% Similarity=0.031 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHh-------c---CCCChHHHHHHHHHhhhhhCCC
Q 041741 571 TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDI-TFVAILTAC-------S---HSGLVDVGVEIFNSMQLDHGVE 639 (748)
Q Consensus 571 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~-------~---~~~~~~~A~~~~~~~~~~~~~~ 639 (748)
+..+..++....-.||-+.+++.+.+..+.+ ..... .--.|+.-| . .....+.|.++++.+.. .-
T Consensus 188 Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~---~y 263 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK---RY 263 (468)
T ss_pred CHHHHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH---hC
Confidence 4455667777777889999999988876643 22222 222222211 1 34567788888888853 34
Q ss_pred CChhHHH-HHHHHHHhcCChHHHHHHHhhCCC-CC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcch-
Q 041741 640 PILDHYT-CMIDCLGRAGHFHEAEMLIDEMPC-KD-----DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPY- 711 (748)
Q Consensus 640 ~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~- 711 (748)
|+...|. .-++.+...|+.++|.+.+++... +. ....+..+...+....++++|.+.+..+.+.+.-+...|
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~ 343 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA 343 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence 6655444 446777788999999999987641 11 233455566667778899999999999888766555444
Q ss_pred HHHhHHHhhcCChHHHHHHHHHHH
Q 041741 712 SLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
+..|-++...|+.+.+.+..+++.
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~ 367 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAE 367 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHH
Confidence 444555566687766666655544
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=1.2 Score=41.94 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=20.0
Q ss_pred CCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041741 554 GDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIA 599 (748)
Q Consensus 554 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 599 (748)
|++.+|...++++.+ .|..+++--=.+|.-.|+.+.-...+++...
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip 165 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP 165 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc
Confidence 444444444444432 1333344334444444444444444444443
No 259
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=2.8 Score=37.64 Aligned_cols=18 Identities=44% Similarity=0.490 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 041741 688 ANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 688 ~~~~~a~~~~~~~~~~~p 705 (748)
.|.-.+...+++-.+++|
T Consensus 209 ~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDP 226 (288)
T ss_pred ccHHHHHHHHHHHHhcCC
Confidence 455556666666666655
No 260
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.43 E-value=0.057 Score=32.51 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.5
Q ss_pred chHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 710 PYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
++..|+.+|...|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.30 E-value=1.6 Score=36.78 Aligned_cols=85 Identities=8% Similarity=0.068 Sum_probs=39.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhc
Q 041741 576 EMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRA 655 (748)
Q Consensus 576 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 655 (748)
.++..+...+.......+++.+...+ ..+....+.++..|++.+ .++.++.++. ..+......+++.|.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHHc
Confidence 34444444555555555666555554 234445555555555432 2233333321 11122233355555555
Q ss_pred CChHHHHHHHhhCC
Q 041741 656 GHFHEAEMLIDEMP 669 (748)
Q Consensus 656 g~~~~A~~~~~~~~ 669 (748)
+-++++..++.++.
T Consensus 83 ~l~~~~~~l~~k~~ 96 (140)
T smart00299 83 KLYEEAVELYKKDG 96 (140)
T ss_pred CcHHHHHHHHHhhc
Confidence 55555555555543
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.27 E-value=1.5 Score=45.82 Aligned_cols=157 Identities=14% Similarity=0.041 Sum_probs=100.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC-CCHH---HHHHHHHH------HH----HcCChhHHHHHHHHHHHcCCCCCHHH
Q 041741 543 GSALIEMYCKCGDIYGARQFFDMMHG-KNTV---TWNEMIHG------YA----QNGYGDEAVRLYKDMIASGVKPDDIT 608 (748)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~l~~~------~~----~~~~~~~a~~~~~~m~~~~~~p~~~~ 608 (748)
+..++...+=.|+-+.+.+.+....+ +++. +--.|+.- ++ ...+.+.|.++++.+.+. .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 34566667778999999999988764 3322 22222211 11 234667899999999985 677765
Q ss_pred HH-HHHHHhcCCCChHHHHHHHHHhhhhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHH
Q 041741 609 FV-AILTACSHSGLVDVGVEIFNSMQLDHGVEPI--LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSS 683 (748)
Q Consensus 609 ~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 683 (748)
|. .-.+.+...|++++|++.|++......--+. .-.+-.++.++.-..+|++|...+..+. .+=+..+|..+..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 54 3445668889999999999976421111122 2334567788889999999999999996 23345555555554
Q ss_pred -HHhcCCHHHHHHHHHHHH
Q 041741 684 -CRLHANVRLAKRAAEELF 701 (748)
Q Consensus 684 -~~~~~~~~~a~~~~~~~~ 701 (748)
+...|+.+.+....+++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~ 367 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAE 367 (468)
T ss_pred HHHhhccchhhhhhHHHHH
Confidence 455677644444434333
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.24 E-value=2.3 Score=42.06 Aligned_cols=163 Identities=10% Similarity=-0.008 Sum_probs=101.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHhcC---CCChHHHHHHHHHhhhhhCCCCChhHHHH
Q 041741 574 WNEMIHGYAQNGYGDEAVRLYKDMIASG---VKPDDITFVAILTACSH---SGLVDVGVEIFNSMQLDHGVEPILDHYTC 647 (748)
Q Consensus 574 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 647 (748)
.-.++-+|....+++.-+++.+.+.... +.-....--...-++.+ .|+.++|+.++..+. .....++.+++..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l-~~~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL-ESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH-hccCCCChHHHHH
Confidence 3355667889999999999999998741 11112222344556666 899999999999852 3456677888888
Q ss_pred HHHHHHh---------cCChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHH------H-hc---CC-
Q 041741 648 MIDCLGR---------AGHFHEAEMLIDEMP-CKDDPVIWEVLLSSCRLHA-NVRLAKRAAEEL------F-RL---DP- 705 (748)
Q Consensus 648 l~~~~~~---------~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~------~-~~---~p- 705 (748)
+++.|.. ....++|...|.+.- ..|+...=-.++..+...| +.+...+.-+-. + +. ++
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 8887753 224678888888763 4454322222222233333 222222211111 1 11 12
Q ss_pred CCCcchHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 706 KNSAPYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 706 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
++--.+..++.++.-.||.++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 13345778888999999999999999998764
No 264
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.21 E-value=2.4 Score=34.13 Aligned_cols=136 Identities=7% Similarity=0.033 Sum_probs=70.2
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHH---HHHHHHHHHhcCChH
Q 041741 380 SQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYV---ASGLIGIYSKCQRNE 456 (748)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 456 (748)
.-.|..++..+++.+...+ .+..-++.++--....-+.+...+. +...|.-.|... ...++.+|.+.+.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~---LdsIGkiFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVET---LDSIGKIFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHH---HHHHGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHH---HHHHhhhcCchhhcchHHHHHHHHHhcc--
Confidence 3456777777777776654 3344444444333333333333333 323332222211 1233444444333
Q ss_pred HHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCC
Q 041741 457 LAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGY 536 (748)
Q Consensus 457 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 536 (748)
+......-+..+..+|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2233445567778888888888888887653 366777777788888888888888888888777764
No 265
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.10 E-value=12 Score=42.45 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=69.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHH
Q 041741 546 LIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVG 625 (748)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A 625 (748)
.+..--+.|-+.+|..++.--.+.--..|.+....+.....+++|.-.|+..-+ ..-.+.+|...|+|.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 334344555666666655433333333455555566667777777777665332 23446677788888888
Q ss_pred HHHHHHhhhhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCC
Q 041741 626 VEIFNSMQLDHGVEPI--LDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDD 673 (748)
Q Consensus 626 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 673 (748)
+.+..++. ..-+ ..+-..|+..+...+++-+|.++..+....|.
T Consensus 985 l~~a~ql~----~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~ 1030 (1265)
T KOG1920|consen 985 LSLAAQLS----EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE 1030 (1265)
T ss_pred HHHHHhhc----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH
Confidence 88877662 1111 22235677777788888888888877764443
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.07 E-value=5.1 Score=37.33 Aligned_cols=197 Identities=14% Similarity=0.041 Sum_probs=135.0
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCH-HHHHHHHH-
Q 041741 505 QFSFATVLSSCAKLSSSFQGRQVHAQIEKD-GYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--KNT-VTWNEMIH- 579 (748)
Q Consensus 505 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~- 579 (748)
...+......+...++...+...+...... ........+......+...+++..+.+.+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 345555555666666666666666655543 2334455556666667777778888888887664 222 22333333
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC--hhHHHHHHHHHH
Q 041741 580 GYAQNGYGDEAVRLYKDMIASGVKP----DDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI--LDHYTCMIDCLG 653 (748)
Q Consensus 580 ~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 653 (748)
.+...|+++.+...+++... ..| ....+......+...++.+.+...+.... ...++ ...+..+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL---KLNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH---hhCcccchHHHHHhhHHHH
Confidence 78889999999999999866 334 22344444445677889999999998884 22333 566778888999
Q ss_pred hcCChHHHHHHHhhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041741 654 RAGHFHEAEMLIDEMP-CKDD-PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 654 ~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 706 (748)
..+++++|...+.... ..|+ ...+......+...++.+.+...+.+.+...|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999988875 3343 455555555555777899999999999999996
No 267
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.06 E-value=9.8 Score=40.59 Aligned_cols=339 Identities=13% Similarity=0.104 Sum_probs=168.2
Q ss_pred cCCCchHHHH-----HHHHHHHhcCChhHHHHHhccCCCCC---cccHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCC
Q 041741 267 GFEADLHLSN-----SLLDMYAKNGDMDSAEVIFSNLPERS---VVSWNVMIAGYGQKY--QSTKAIELLQRMKSCGFEP 336 (748)
Q Consensus 267 ~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~p 336 (748)
|++.+..-|. .+++-+...+.+..|.++-..+..|. ...|......+.+.. .-+++++-.++=..... -
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~ 505 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-T 505 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-C
Confidence 5555544443 35666777788888888887777664 334444445555442 22333333333222222 3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHhccCCC--------CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 041741 337 DEVTSINMLVACVRSGDIKTGREMFDSMPS--------PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLA 408 (748)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 408 (748)
+...|..+.+-....|+.+-|..+++.=+. .+..-+...+.-....|+.+....++-.+.+. .+...+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~ 582 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLF 582 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHH
Confidence 445677777777778888888888765432 22333455566666777777777776666553 1111121
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchH
Q 041741 409 IILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIE 488 (748)
Q Consensus 409 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 488 (748)
..+ .+...|..+|....+..-. ..+.+.|.. ++...+...|.. ++
T Consensus 583 ~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q-~dn~~~~a~~~~------------------q~---- 627 (829)
T KOG2280|consen 583 MTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQ-DDNHQALASFHL------------------QA---- 627 (829)
T ss_pred HHH------HhchhhhHHHHHHHHhhch------hhhhhhhhc-ccchhhhhhhhh------------------hh----
Confidence 111 1112223333332221100 001111111 111111111000 00
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCch----------hHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCCHH
Q 041741 489 AFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSF----------QGRQVHAQIEKD-GYVNDIFVGSALIEMYCKCGDIY 557 (748)
Q Consensus 489 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 557 (748)
...++. ..|..|+.. .....+.+..... +-..+...+... |....--+.+..+.-+...|+..
T Consensus 628 -~~~~~~--~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k 701 (829)
T KOG2280|consen 628 -SYAAET--IEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNK 701 (829)
T ss_pred -hhhhhh--hcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchH
Confidence 000000 011122211 1122222222111 111112222221 32232333344455566678888
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhC
Q 041741 558 GARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHG 637 (748)
Q Consensus 558 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 637 (748)
+|.++-.+..-||-..|-.-+.+++..+++++-.+.-+.+. ++.-|.-...+|.+.|+.++|..++-+.. +
T Consensus 702 ~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~ 772 (829)
T KOG2280|consen 702 RAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---G 772 (829)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---C
Confidence 88888888877888777777788888888776555444322 13446666778888888888887776552 2
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 041741 638 VEPILDHYTCMIDCLGRAGHFHEAEMLID 666 (748)
Q Consensus 638 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 666 (748)
. ...+.+|.+.|++.+|.+.--
T Consensus 773 l-------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 773 L-------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred h-------HHHHHHHHHhccHHHHHHHHH
Confidence 1 146677788888887776543
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.06 E-value=0.37 Score=44.12 Aligned_cols=98 Identities=9% Similarity=0.076 Sum_probs=74.6
Q ss_pred HHhhccCC--CCCchhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCcchHHHHHHHhcccc------------
Q 041741 74 YKLFDEMP--ERNVVSWNNLISALVRN-----GLEEKALSVYNKMSNEGFVPTHITLASVFKASTALL------------ 134 (748)
Q Consensus 74 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------ 134 (748)
...|+..+ ++|-.+|...+..+... +..+=....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45555555 46777888888887654 344445577888999999999999999998776543
Q ss_pred ----CcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCCh
Q 041741 135 ----DVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWT 171 (748)
Q Consensus 135 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 171 (748)
+-+-+..++++|...|+.||-.+-..|++++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3345788999999999999999999999998876643
No 269
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.92 E-value=0.54 Score=38.37 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHh-CCCCchHHHHHHHH
Q 041741 501 MYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKD-GYVNDIFVGSALIE 548 (748)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 548 (748)
..|+..+..+++.+++..+++..|.++++.+.+. +++.+..+|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455555555555555555555555555554443 44444444444443
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.88 E-value=2 Score=36.30 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=51.1
Q ss_pred cCCCChHHHHHHHHHhhhhhCCCCChhHHH-HHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCCHHHHH
Q 041741 617 SHSGLVDVGVEIFNSMQLDHGVEPILDHYT-CMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVLLSSCRLHANVRLAK 694 (748)
Q Consensus 617 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 694 (748)
...++.+++..++..+. -+.|...... .-+..+.+.|++.+|..+++++. ..|....-..|+..|........=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 45567777777777774 3445432222 23445667777788877777775 3343344444555444333222334
Q ss_pred HHHHHHHhcCCCCCcchHHHhHH
Q 041741 695 RAAEELFRLDPKNSAPYSLLANI 717 (748)
Q Consensus 695 ~~~~~~~~~~p~~~~~~~~l~~~ 717 (748)
....++++..| |+.+...+..+
T Consensus 98 ~~A~evle~~~-d~~a~~Lv~~L 119 (160)
T PF09613_consen 98 RYADEVLESGA-DPDARALVRAL 119 (160)
T ss_pred HHHHHHHhcCC-ChHHHHHHHHH
Confidence 44555555555 44444444333
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.35 E-value=0.12 Score=32.88 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=28.0
Q ss_pred CcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 708 SAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 708 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
|.++..++.+|...|++++|++.|+++.+..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45788999999999999999999999877554
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.35 E-value=0.14 Score=30.20 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041741 676 IWEVLLSSCRLHANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 676 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 706 (748)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666677777777777777777777773
No 273
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.30 E-value=3.9 Score=34.40 Aligned_cols=63 Identities=19% Similarity=0.366 Sum_probs=30.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhc-CChHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 041741 610 VAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRA-GHFHEAEMLIDEMPCKDDPVIWEVLLSSCR 685 (748)
Q Consensus 610 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 685 (748)
..+++.|.+.+.++++.-++.++ |. +...+..+... ++.+.|.+++++. .++..|..++..+.
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~----~~------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKD----GN------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhh----cC------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 33455555555555555555544 11 22223333333 5666666666652 24555655555443
No 274
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.20 E-value=12 Score=38.91 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhccCCC--CCcch-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHh-
Q 041741 339 VTSINMLVACVRSGDIKTGREMFDSMPS--PSVSS-WNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSC- 414 (748)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~- 414 (748)
..+..++.--....+.+.+...++.+.. |...- |......=.+.|..+.+.++|++-... ++-+...+...+.-+
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLK 124 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHh
Confidence 3344455443344445556666666664 33332 334444456778888888888887763 555555555555433
Q ss_pred hccCChHHHHHHHHHHHhh-cCCc-hhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHH
Q 041741 415 AAMGILESGKQVHAASLKT-ASHI-DNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGL 480 (748)
Q Consensus 415 ~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 480 (748)
...|+.+.....++.+... |... +...+...+.--..++++.....+++++.+.....++..-..|
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f 192 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRF 192 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHH
Confidence 3567777777777777663 3332 4455666666667777788888888777765555444444333
No 275
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.17 E-value=5 Score=35.08 Aligned_cols=114 Identities=9% Similarity=0.005 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHhcCCCChHHHHHHHHHhhhhhCCCCChh----HHHHHHHHHHhcCChHHHH
Q 041741 589 EAVRLYKDMIASGVKPDDITFV--AILTACSHSGLVDVGVEIFNSMQLDHGVEPILD----HYTCMIDCLGRAGHFHEAE 662 (748)
Q Consensus 589 ~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~ 662 (748)
+.....+++....-......+. .+...+...+++++|...++... +.+.|.. .-..|++.....|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l---~~t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL---AQTKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5555566666642122222222 33456678888888888887663 2222211 1225677788889999999
Q ss_pred HHHhhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 663 MLIDEMPCKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 663 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
..++....+. .+.....-...+...|+-++|...|+++++..+
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 9888876221 233344445668888999999999999988875
No 276
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.04 E-value=1.2 Score=40.97 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=75.4
Q ss_pred HHHhhhcC--CCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCC-----------
Q 041741 560 RQFFDMMH--GKNTVTWNEMIHGYAQ-----NGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGL----------- 621 (748)
Q Consensus 560 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------- 621 (748)
+..|..+. +.|-.+|-..+..+.. .+.++=....++.|.+-|+.-|..+|+.|+..+-+...
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 4577777777776654 35666677788899999999999999999987754332
Q ss_pred -----hHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChH
Q 041741 622 -----VDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFH 659 (748)
Q Consensus 622 -----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 659 (748)
-+=++.++++| +..|+.||..+-..+++++.+.+..-
T Consensus 134 HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 24478999999 89999999999999999999887643
No 277
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.91 E-value=1.3 Score=45.39 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=73.4
Q ss_pred hhHHHHHHHccCCchhhhhhhhcCCCCchhhhhHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChhHHH
Q 041741 26 CNRLIELYSKCNNTHSAQHLFDKMPHKDIYSWNAILSAQCKSDDLEFAYKLFDEMPERNVVSWNNLISALVRNGLEEKAL 105 (748)
Q Consensus 26 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 105 (748)
.+.++.-+-+.|..+.|+.+-+.- ..-.....+.|+++.|.++.++.. +...|..|......+|+.+-|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence 566666666677766666664331 123344455577777777666554 4457777777777888888777
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhc
Q 041741 106 SVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEE 180 (748)
Q Consensus 106 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 180 (748)
+.|.+... |..++-.+...|+.+...++.+.....|- ++....++...|+.++..+++.+
T Consensus 368 ~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 368 ECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777543 34555556666666666666555554441 33333444445555555554443
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=17 Score=39.46 Aligned_cols=54 Identities=6% Similarity=0.159 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041741 545 ALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMI 598 (748)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 598 (748)
.++..+.+..+.+.+..+.+...+.++..|..++..+++.+.++.-.+...+.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 567778888888999888888888889999999999998886666555444433
No 279
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.75 E-value=1.9 Score=36.55 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHH--
Q 041741 570 NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDI-TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYT-- 646 (748)
Q Consensus 570 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-- 646 (748)
+...|..-++ +.+.+..++|+.-|..+.+.|...=+. ............|+...|+..|+++-.+..++.-.....
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344444444 456678899999999999887543222 222333455788999999999998853322222111222
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHH
Q 041741 647 CMIDCLGRAGHFHEAEMLIDEMPCKD---DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSL 713 (748)
Q Consensus 647 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 713 (748)
.-+..+...|.+++....++.+.... ....-..|.-+..+.|++.+|...|+++.. +...|.....
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirq 205 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQ 205 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHH
Confidence 23456778999999998888886222 234556777778889999999999998776 3333333333
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.72 E-value=5.7 Score=33.86 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=77.1
Q ss_pred HHhcCCHHHHHHHhhhcCCCCHHHHHHHH-----HHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHH--HHHhcCCCC
Q 041741 550 YCKCGDIYGARQFFDMMHGKNTVTWNEMI-----HGYAQNGYGDEAVRLYKDMIASGVKPDDI-TFVAI--LTACSHSGL 621 (748)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l--~~~~~~~~~ 621 (748)
..+.++.++|+.-|..+.+.+.-.|..|. ......|+...|+..|++.-.-...|-.. -...| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45667888888888888776555555443 34566788888888888877643334332 12222 223467788
Q ss_pred hHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 622 VDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 622 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
++....-.+-+ ...+.+.....-..|+-+-.+.|++.+|..+|..+.
T Consensus 148 y~dV~srvepL-a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 148 YDDVSSRVEPL-AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHHhhhc-cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 88877777766 233333344455577777788888888888888774
No 281
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.62 E-value=0.019 Score=48.85 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=46.0
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHH
Q 041741 511 VLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEA 590 (748)
Q Consensus 511 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 590 (748)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++.... .....++..|.+.|.++.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666667777777777777666556667777777777777666666666652221 2223334444444444444
Q ss_pred HHHHHH
Q 041741 591 VRLYKD 596 (748)
Q Consensus 591 ~~~~~~ 596 (748)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.57 E-value=0.47 Score=44.47 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 678 EVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 678 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
..++..+...|+.+.+...++.++..+|-+...+..+..+|.+.|+...|+..|+.+++
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34445555566666666666666666666666666666666666666666666666544
No 283
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.55 E-value=3.1 Score=42.77 Aligned_cols=132 Identities=14% Similarity=0.077 Sum_probs=73.8
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCCh
Q 041741 508 FATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYG 587 (748)
Q Consensus 508 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 587 (748)
...++.-+.+.|-++.|.++... +. .-.....+.|+++.|.++.+... +...|..|......+|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 44555555556666666554322 21 23455667788888887776654 556788888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 041741 588 DEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDE 667 (748)
Q Consensus 588 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 667 (748)
+-|.+.|++..+ +..|+-.|...|+.+.-.++.+.. ...| -++....++.-.|+.++..+++.+
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a-~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA-EERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH-HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH-HHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888877776543 455555566666666555555444 2211 123333444445666666666655
Q ss_pred CC
Q 041741 668 MP 669 (748)
Q Consensus 668 ~~ 669 (748)
..
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 284
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.47 E-value=0.13 Score=28.14 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=20.3
Q ss_pred cchHHHhHHHhhcCChHHHHHHHH
Q 041741 709 APYSLLANIYSSLGRWDDLRAVRE 732 (748)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~ 732 (748)
.+...++.++...|+.++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467788999999999999998876
No 285
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.24 E-value=2.5 Score=36.84 Aligned_cols=91 Identities=13% Similarity=0.016 Sum_probs=67.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCCHh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc
Q 041741 647 CMIDCLGRAGHFHEAEMLIDEMPCKDDPV-----IWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSL 721 (748)
Q Consensus 647 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 721 (748)
.++..+..+|++++|...++.....|... .-..|.......|.++.|...++....-.= .+......|+++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 45677889999999999998775344332 333455567788999999888875332211 234577889999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 041741 722 GRWDDLRAVRELMSENC 738 (748)
Q Consensus 722 g~~~~A~~~~~~~~~~~ 738 (748)
||.++|+.-|++....+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999988765
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.09 E-value=20 Score=38.66 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=38.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCH
Q 041741 611 AILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANV 690 (748)
Q Consensus 611 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 690 (748)
..+..|.+.|-+++-+-++.+| | .+..+|.-.--+.++.++|.++.+. ..|+..|..|+..+...-.+
T Consensus 639 kA~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~ 706 (846)
T KOG2066|consen 639 KALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEF 706 (846)
T ss_pred HHHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHH
Confidence 3344444445555555555444 2 1122222223344555556555555 56889999999877655444
Q ss_pred HHHH
Q 041741 691 RLAK 694 (748)
Q Consensus 691 ~~a~ 694 (748)
-.+.
T Consensus 707 ~~~l 710 (846)
T KOG2066|consen 707 IKAL 710 (846)
T ss_pred HHHH
Confidence 4333
No 287
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.03 E-value=0.16 Score=29.98 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=24.6
Q ss_pred cchHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 709 APYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
.++..+|.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999987653
No 288
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.81 E-value=0.3 Score=45.90 Aligned_cols=96 Identities=16% Similarity=0.060 Sum_probs=68.3
Q ss_pred HHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhc
Q 041741 611 AILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLH 687 (748)
Q Consensus 611 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 687 (748)
--..-|.++|++++|+..|.+.. ...| +..++..-+.+|.+.+++..|..=+.... ...-...|..-+.+-...
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33667889999999999998764 4556 66677777888999988887776666554 111122333334444456
Q ss_pred CCHHHHHHHHHHHHhcCCCCCc
Q 041741 688 ANVRLAKRAAEELFRLDPKNSA 709 (748)
Q Consensus 688 ~~~~~a~~~~~~~~~~~p~~~~ 709 (748)
|+.++|.+-++.++++.|++..
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHH
Confidence 8889999999999999997543
No 289
>PRK09687 putative lyase; Provisional
Probab=91.77 E-value=13 Score=35.77 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=34.9
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 041741 270 ADLHLSNSLLDMYAKNGDMDSAEVIFSNLPERSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINML 345 (748)
Q Consensus 270 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 345 (748)
++..+....+.++.+.++......+.+.+..++ .....+.++...|.. +|+..+..+.+. .||...-...+
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~ 274 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAI 274 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHH
Confidence 444555555566666665433333333333222 233455666666664 566666666653 23444433333
No 290
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.76 E-value=16 Score=39.83 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=23.8
Q ss_pred chHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhcc
Q 041741 370 SSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAM 417 (748)
Q Consensus 370 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 417 (748)
.....+|..+.+.|++++|.++..+... +.......+...+..+...
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 3344555566666666666666644332 2344445555555555443
No 291
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.58 E-value=0.2 Score=29.19 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=20.2
Q ss_pred chHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 710 PYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
++..+|.+|.+.|++++|.++|+++.++-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 35667777777777777777777766543
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.35 E-value=0.35 Score=29.05 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041741 677 WEVLLSSCRLHANVRLAKRAAEELFRL 703 (748)
Q Consensus 677 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 703 (748)
+..|...|...|++++|++++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777888888888888888885544
No 293
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.32 E-value=1.7 Score=41.07 Aligned_cols=158 Identities=13% Similarity=-0.030 Sum_probs=118.1
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHH----HHHHHHHHhcCC
Q 041741 582 AQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHY----TCMIDCLGRAGH 657 (748)
Q Consensus 582 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~ 657 (748)
..+|++.+|...|+++++. .+.|...+...=.+|...|..+.-...++++.- .-.|+...| ..++.++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578899999999999986 567778888888899999999988888888742 224554333 355667789999
Q ss_pred hHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCcchHHHhHHHhhcCChHHHHHHH
Q 041741 658 FHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK----NSAPYSLLANIYSSLGRWDDLRAVR 731 (748)
Q Consensus 658 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 731 (748)
+++|.+.-++.. .+.|.-.......++...|+..++.+..++--..-.. -...|.+.+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998885 3346667778888899999999999988764332221 1234777888889999999999999
Q ss_pred HHHHhcCCCCC
Q 041741 732 ELMSENCIVKD 742 (748)
Q Consensus 732 ~~~~~~~~~~~ 742 (748)
..=.-....++
T Consensus 271 D~ei~k~l~k~ 281 (491)
T KOG2610|consen 271 DREIWKRLEKD 281 (491)
T ss_pred HHHHHHHhhcc
Confidence 86433333333
No 294
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.21 E-value=2.8 Score=36.99 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=56.9
Q ss_pred HHhcCChHHHHHHHhhCCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCcchHHHhHHHhhcCCh
Q 041741 652 LGRAGHFHEAEMLIDEMPCKD---DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK----NSAPYSLLANIYSSLGRW 724 (748)
Q Consensus 652 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~ 724 (748)
..+.|+ ++|...|-.+...| ++.....|+..|. ..|.++++..+-+++++.+. ||.++..|+.+|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344555 77888887776444 4555555555554 67999999999999997543 678999999999999999
Q ss_pred HHHH
Q 041741 725 DDLR 728 (748)
Q Consensus 725 ~~A~ 728 (748)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9885
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.21 E-value=9.1 Score=32.99 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCC
Q 041741 260 HCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLP 299 (748)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 299 (748)
...+.+.+++|+...+..+++.+.+.|.+.....++..-.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V 56 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV 56 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Confidence 3344566888888899999999999888877666655433
No 296
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.17 E-value=0.13 Score=48.52 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=58.9
Q ss_pred hcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHH
Q 041741 654 RAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVR 731 (748)
Q Consensus 654 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 731 (748)
..|.+++|++.+.+.. .++....+..-.++++..+.+..|++-+..+++++|+...-|-..+.+..-+|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 3466777777766654 23344445555566777777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCC
Q 041741 732 ELMSENCIV 740 (748)
Q Consensus 732 ~~~~~~~~~ 740 (748)
+...+.++.
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 766655543
No 297
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.14 E-value=15 Score=35.49 Aligned_cols=54 Identities=13% Similarity=0.001 Sum_probs=27.7
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHhC-----CCCchHHHHHHHHHHHhcCCHHHHHHHhh
Q 041741 511 VLSSCAKLSSSFQGRQVHAQIEKDG-----YVNDIFVGSALIEMYCKCGDIYGARQFFD 564 (748)
Q Consensus 511 l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 564 (748)
+..++...+.++++.+.|+...+.. ......++..|...|.+..++++|.-+..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhH
Confidence 4445555555666666555544321 11123455556666666666666554443
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.06 E-value=0.23 Score=29.30 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=24.7
Q ss_pred cchHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 709 APYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
.++..+|.+|...|++++|+..+++..+-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46789999999999999999999997653
No 299
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.03 E-value=0.5 Score=42.24 Aligned_cols=85 Identities=8% Similarity=-0.046 Sum_probs=63.5
Q ss_pred HHHhcCChHHHHHHHhhCC-CCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHH
Q 041741 651 CLGRAGHFHEAEMLIDEMP-CKDDP-VIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLR 728 (748)
Q Consensus 651 ~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 728 (748)
.|....+++.|..-|.+.. ..|.. ..|..-+..+.+..+++.+..-..+++++.|+....++.|+........+++|+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 3444556667776665553 56665 444555556667888888888888889999988888899999988888899998
Q ss_pred HHHHHHH
Q 041741 729 AVRELMS 735 (748)
Q Consensus 729 ~~~~~~~ 735 (748)
..+++..
T Consensus 99 ~~Lqra~ 105 (284)
T KOG4642|consen 99 KVLQRAY 105 (284)
T ss_pred HHHHHHH
Confidence 8888873
No 300
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.68 E-value=9.3 Score=38.82 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhhhcCC--C---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 041741 540 IFVGSALIEMYCKCGDIYGARQFFDMMHG--K---NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD-ITFVAIL 613 (748)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~ 613 (748)
+.+-..+..+.-+.|+.++|.+.++++.+ | +......|+.++...+.+.++..++.+..+...+.+. .+|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 44445567777788999999999988864 2 2345667889999999999999999887654332222 3566554
Q ss_pred H
Q 041741 614 T 614 (748)
Q Consensus 614 ~ 614 (748)
-
T Consensus 339 L 339 (539)
T PF04184_consen 339 L 339 (539)
T ss_pred H
Confidence 3
No 301
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.44 E-value=14 Score=33.97 Aligned_cols=180 Identities=13% Similarity=0.133 Sum_probs=85.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHC---CC--CCCHHHHHHHHHhhcCCCCchhHHHHHHHHHH----h-CCCCchHHHH
Q 041741 475 SMIAGLSLNSLDIEAFMFFKQMRQN---EM--YPTQFSFATVLSSCAKLSSSFQGRQVHAQIEK----D-GYVNDIFVGS 544 (748)
Q Consensus 475 ~li~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~ 544 (748)
.+|..+.+.+++++.+..+++|... .+ .-+..+.+.++...+...+.+...++++.-.. . +-..-..+-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3455555566666655555555321 11 11233445555544444444433333332111 1 1111112223
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC--------C-------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHHH
Q 041741 545 ALIEMYCKCGDIYGARQFFDMMHG--------K-------NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASG-VKPDDIT 608 (748)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~ 608 (748)
-|...|...|.+.+..+++.++.. . -...|..-|+.|..+++-.....++++.+... --|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 455566666666666666665542 0 12355566677777777777777777765432 2344433
Q ss_pred HHHHHHHh-----cCCCChHHHHH-HHHHhhhhhCC--CCCh---hHHHHHHHHHHhcC
Q 041741 609 FVAILTAC-----SHSGLVDVGVE-IFNSMQLDHGV--EPIL---DHYTCMIDCLGRAG 656 (748)
Q Consensus 609 ~~~l~~~~-----~~~~~~~~A~~-~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g 656 (748)
..+++-| .+.|.+++|.. .|+.. +.+.- .|.. --|..++.++.+.|
T Consensus 230 -mGvIRECGGKMHlreg~fe~AhTDFFEAF-KNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 230 -MGVIRECGGKMHLREGEFEKAHTDFFEAF-KNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred -HhHHHHcCCccccccchHHHHHhHHHHHH-hcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 3344544 45677777654 33333 32221 2221 12445666666655
No 302
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.25 E-value=2.6 Score=37.28 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=67.6
Q ss_pred hcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCC-HhHHHHHHHHHHhcCCHHH
Q 041741 616 CSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDD-PVIWEVLLSSCRLHANVRL 692 (748)
Q Consensus 616 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~ 692 (748)
|-..|-+.-|.--|.+.. .+.|+ +..|+.++--+...|+++.|.+.|+... ..|. ......-.-.+.--|+++.
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 455566666666555543 66777 5667777777888888888888888774 3332 2222222222334578888
Q ss_pred HHHHHHHHHhcCCCCCcchHHHhHHHhhcC--ChHHHHHHHH
Q 041741 693 AKRAAEELFRLDPKNSAPYSLLANIYSSLG--RWDDLRAVRE 732 (748)
Q Consensus 693 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~ 732 (748)
|.+-+.+-.+.+|+||- .-.|+|.... |..+|..-+.
T Consensus 152 Aq~d~~~fYQ~D~~DPf---R~LWLYl~E~k~dP~~A~tnL~ 190 (297)
T COG4785 152 AQDDLLAFYQDDPNDPF---RSLWLYLNEQKLDPKQAKTNLK 190 (297)
T ss_pred hHHHHHHHHhcCCCChH---HHHHHHHHHhhCCHHHHHHHHH
Confidence 88888888888887763 2334444433 4445655443
No 303
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.07 E-value=0.7 Score=30.63 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 041741 678 EVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLL 714 (748)
Q Consensus 678 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 714 (748)
..+.-++.+.|++++|.+..+.+++.+|+|.++....
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3455678899999999999999999999886654443
No 304
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.56 E-value=0.68 Score=26.87 Aligned_cols=31 Identities=13% Similarity=-0.003 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041741 677 WEVLLSSCRLHANVRLAKRAAEELFRLDPKN 707 (748)
Q Consensus 677 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 707 (748)
+..++.++...|++++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456667778899999999999999988853
No 305
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.26 E-value=26 Score=35.17 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=36.0
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCC
Q 041741 84 NVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLD 152 (748)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (748)
|..+|-.|++-+..++.+++..+++++|..- ++.-+.+|..-+.+=....++..++.++....+....
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 3445555666666666666666666665431 2333344555555444555566666666555555444
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.25 E-value=0.95 Score=42.76 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=62.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhc
Q 041741 577 MIHGYAQNGYGDEAVRLYKDMIASGVKP-DDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRA 655 (748)
Q Consensus 577 l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 655 (748)
-.+.|.++|.+++|+..|.+.... .| |.+++..-..+|.+..++..|..-..... ... ..-...|..-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai-aLd-~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI-ALD-KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH-Hhh-HHHHHHHHHHHHHHHHH
Confidence 477899999999999999998884 56 88888888899999999888877766553 100 00122333333333445
Q ss_pred CChHHHHHHHhhCC-CCCC
Q 041741 656 GHFHEAEMLIDEMP-CKDD 673 (748)
Q Consensus 656 g~~~~A~~~~~~~~-~~~~ 673 (748)
|+..+|.+=++... ..|.
T Consensus 179 g~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPK 197 (536)
T ss_pred hhHHHHHHhHHHHHhhCcc
Confidence 66666666555543 4555
No 307
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.67 E-value=0.63 Score=27.31 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=25.1
Q ss_pred cchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 709 APYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.++..++.+|...|++++|..+|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999998765
No 308
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.56 E-value=0.1 Score=44.29 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=60.2
Q ss_pred HHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHH
Q 041741 126 VFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEA 205 (748)
Q Consensus 126 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 205 (748)
++..+.+.+.......+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666667777777777777776666788889999999999888888888874332 3345677777778888888
Q ss_pred HHHHHHH
Q 041741 206 LEMFRLM 212 (748)
Q Consensus 206 ~~~~~~m 212 (748)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 8777765
No 309
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.55 E-value=22 Score=33.44 Aligned_cols=58 Identities=16% Similarity=0.039 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 679 VLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 679 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.....|..+|.+.+|.+..++++.++|=+.+.+..|..++...||.-+|.+.|+.+.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445588899999999999999999999999999999999999999999999998754
No 310
>PRK10941 hypothetical protein; Provisional
Probab=88.48 E-value=2 Score=40.58 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 678 EVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 678 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
+.+-.++.+.+++++|..+.+.++.+.|++|.-+.-.|-+|.+.|.+..|..-++...+..+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 44455677788888888888888888888887778888888888888888877776655443
No 311
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.47 E-value=4.3 Score=38.28 Aligned_cols=79 Identities=10% Similarity=0.249 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhh----hhCCCCChhHHHH
Q 041741 572 VTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQL----DHGVEPILDHYTC 647 (748)
Q Consensus 572 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~ 647 (748)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|...|+...|+..|+++.. +.|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345556667777777777777777777753 45666777777777777777777777776532 3466666555444
Q ss_pred HHHH
Q 041741 648 MIDC 651 (748)
Q Consensus 648 l~~~ 651 (748)
..++
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 312
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.33 E-value=1 Score=34.15 Aligned_cols=54 Identities=26% Similarity=0.196 Sum_probs=31.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCcchHHHhHHHhhcCChH
Q 041741 672 DDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK--NSAPYSLLANIYSSLGRWD 725 (748)
Q Consensus 672 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 725 (748)
.|......+...+...|+++.|.+.+-.+++.+|+ +..+-..+..++...|.-+
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 34556666666677777777777777777776654 3556666666666666643
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.22 E-value=42 Score=36.37 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=18.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 041741 372 WNAMLSSYSQSENHKEAIKLFREMQ 396 (748)
Q Consensus 372 ~~~ll~~~~~~~~~~~a~~~~~~m~ 396 (748)
-..|+..|...+++..|+.++-..+
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhcc
Confidence 3447778888888888888776554
No 314
>PRK09687 putative lyase; Provisional
Probab=88.19 E-value=25 Score=33.77 Aligned_cols=25 Identities=4% Similarity=-0.056 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
.+.++...|+. +|...+.++...+|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 33444444443 35555555555444
No 315
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.18 E-value=11 Score=36.31 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcCCCCCHH--HHHHHHHHhcCCCC--hHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcC
Q 041741 588 DEAVRLYKDMIASGVKPDDI--TFVAILTACSHSGL--VDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAG 656 (748)
Q Consensus 588 ~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 656 (748)
+.+..+|+.+.+.|+..+.. ....++..+..... ...+.++++.+ ++.++++....|..++-.-.-.+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l-~~~~~kik~~~yp~lGlLall~~ 231 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL-KKNGVKIKYMHYPTLGLLALLED 231 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH-HHcCCccccccccHHHHHHhcCC
Confidence 44667777788877766553 33444443332222 34677788877 56688877776666654443333
No 316
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.13 E-value=22 Score=32.93 Aligned_cols=62 Identities=15% Similarity=0.017 Sum_probs=41.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhCC-CCC-C---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 041741 647 CMIDCLGRAGHFHEAEMLIDEMP-CKD-D---PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS 708 (748)
Q Consensus 647 ~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 708 (748)
.+++-|.+.|.+-.|..-++.+. .-| . ...+-.+..+|...|-.++|...-+-+-...|+++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 35677888899988888888875 112 2 33444556678888888888877766555556443
No 317
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.09 E-value=0.77 Score=39.38 Aligned_cols=29 Identities=28% Similarity=0.372 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHhHHHhh
Q 041741 692 LAKRAAEELFRLDPKNSAPYSLLANIYSS 720 (748)
Q Consensus 692 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 720 (748)
+|+.-+++++.++|+...++..+|.+|..
T Consensus 53 dAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 53 DAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 318
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.96 E-value=8.8 Score=38.39 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCcchHHHhHHH-hhcCChHHHHHHHHHHHhc---C-CCCCCCCCC
Q 041741 678 EVLLSSCRLHANVRLAKRAAEELFRLDPK-NSAPYSLLANIY-SSLGRWDDLRAVRELMSEN---C-IVKDPAYSL 747 (748)
Q Consensus 678 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~---~-~~~~~~~~~ 747 (748)
...+..+.+.|-+..|.+..+-++.++|. ||.......+.| .+.++++--++..+..... . ...-|+++|
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 33455677889999999999999999999 888777777776 4557777777777765542 1 223566654
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.91 E-value=32 Score=34.57 Aligned_cols=54 Identities=6% Similarity=-0.085 Sum_probs=27.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHh
Q 041741 477 IAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKD 534 (748)
Q Consensus 477 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 534 (748)
..+.-+.|+++...+........ .++...+..+... ..++.+.+....+.....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 44555677777644433333211 2233333333322 667777777766665543
No 320
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.85 E-value=46 Score=36.39 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=17.5
Q ss_pred HHHhcCChHHHHHHHhhCCCCC-CHhHHH
Q 041741 651 CLGRAGHFHEAEMLIDEMPCKD-DPVIWE 678 (748)
Q Consensus 651 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 678 (748)
-+...|++++|++.++++..-| ++....
T Consensus 514 ~~~~~g~~~~AL~~i~~L~liP~~~~~V~ 542 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEKLDLIPLDPSEVR 542 (613)
T ss_dssp HHHHTT-HHHHHHHHHHTT-S-S-HHHHH
T ss_pred HHHHcCCHHHHHHHHHhCCCCCCCHHHHH
Confidence 3567899999999999997444 344333
No 321
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.81 E-value=28 Score=33.76 Aligned_cols=134 Identities=10% Similarity=0.064 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhc--cC----ChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHH
Q 041741 385 HKEAIKLFREMQFRGVKPDRTTLAIILSSCAA--MG----ILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELA 458 (748)
Q Consensus 385 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 458 (748)
+++.+.+++.|.+.|.+-+..++....-.... .. ....+..+++.|.+..+-.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 34556777888888887777666553322222 11 23344455555555443221
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhCCCc----hHHHHHHHHHHHCCCCCCHH--HHHHHHHhhcCCCC--chhHHHHHHH
Q 041741 459 ERVFHRIPELDIVCWNSMIAGLSLNSLD----IEAFMFFKQMRQNEMYPTQF--SFATVLSSCAKLSS--SFQGRQVHAQ 530 (748)
Q Consensus 459 ~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~ 530 (748)
.++-.++..++.. ..++. +.+...|+.+.+.|+..+.. ..+.++..+....+ ..++..+++.
T Consensus 138 --------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 138 --------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred --------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1122233333322 22222 55677788888878776433 34444444443333 3467888888
Q ss_pred HHHhCCCCchHHHHHHHH
Q 041741 531 IEKDGYVNDIFVGSALIE 548 (748)
Q Consensus 531 ~~~~~~~~~~~~~~~l~~ 548 (748)
+.+.|+++....|..+.-
T Consensus 208 l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHcCCccccccccHHHH
Confidence 888888887777665543
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.77 E-value=57 Score=37.38 Aligned_cols=149 Identities=12% Similarity=0.115 Sum_probs=77.3
Q ss_pred ChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH----hhcCCCCchhHHHHHH
Q 041741 454 RNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLS----SCAKLSSSFQGRQVHA 529 (748)
Q Consensus 454 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~----~~~~~~~~~~a~~~~~ 529 (748)
+++.|+.-+..+. ...|...+..--++|.+.+|+.++ .|+...+..+.. .+.....++.|.-.|+
T Consensus 895 ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye 963 (1265)
T KOG1920|consen 895 RYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYE 963 (1265)
T ss_pred HHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3444444443332 333444455555666666666654 344444433332 2333444444444433
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 041741 530 QIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVT---WNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD 606 (748)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 606 (748)
..-+. .--+.+|..+|+|.+|..+..++..+-... -..|+..+...+++-+|-+++.+... .|..
T Consensus 964 ~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~~ 1031 (1265)
T KOG1920|consen 964 RCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DPEE 1031 (1265)
T ss_pred HhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHHH
Confidence 32211 123556677778888887777766532222 25677777778888888777777665 2222
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHH
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFN 630 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~ 630 (748)
.+..+++...|++|..+..
T Consensus 1032 -----av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1032 -----AVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred -----HHHHHhhHhHHHHHHHHHH
Confidence 2233444445555555443
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.72 E-value=15 Score=32.84 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhh-hhCCCCChhHHHHHHHHH
Q 041741 574 WNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQL-DHGVEPILDHYTCMIDCL 652 (748)
Q Consensus 574 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 652 (748)
.+..+..+.+.+...+++...++-++.+ +-|..+-..+++.++-.|++++|..-++-... .....+....|..++++-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 3445667778888999999888877763 34445667788899999999999888776521 123334456666666542
Q ss_pred HhcCChHHHH-HHHhhC--C---CCCCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCC
Q 041741 653 GRAGHFHEAE-MLIDEM--P---CKDDPVIWEVLLSS--CRLHANVRLAKRAAEELFRLDPKN 707 (748)
Q Consensus 653 ~~~g~~~~A~-~~~~~~--~---~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~ 707 (748)
. +. ++|.-- + ..|.+.....+... +..-|.-+.+...-+++++..|..
T Consensus 83 a-------~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 83 A-------ARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred H-------HHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 2 22 223222 1 33555555555544 333345566677777788877753
No 324
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.67 E-value=21 Score=32.33 Aligned_cols=144 Identities=10% Similarity=0.067 Sum_probs=66.0
Q ss_pred HHHhCCCchHHHHHHHHHHHC-----CCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHh--CCCC--chHHHHHHHHH
Q 041741 479 GLSLNSLDIEAFMFFKQMRQN-----EMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKD--GYVN--DIFVGSALIEM 549 (748)
Q Consensus 479 ~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~ 549 (748)
.+.-.+.+++|.++|.+.... +...--..|.-....+.+.|+-..+-..+-++-+. ...| .+.....-|..
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEI 102 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 344456778888887765321 11111123333334444444433333333333222 1122 12233333444
Q ss_pred HHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHc--CCCCCH---HHHHHHHHHhcCCCChH
Q 041741 550 YCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQN-GYGDEAVRLYKDMIAS--GVKPDD---ITFVAILTACSHSGLVD 623 (748)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~--~~~p~~---~~~~~l~~~~~~~~~~~ 623 (748)
|...|++..|...... +...|-.. .+++.|+..|++.-+- |-..+. .++.-+...-...+++.
T Consensus 103 yt~~Grf~~aAk~~~~-----------iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 103 YTDMGRFTMAAKHHIE-----------IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHhhhHHHHHHhhhhh-----------HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5555555444433222 22233222 4556666666665542 111111 22333333346678899
Q ss_pred HHHHHHHHhh
Q 041741 624 VGVEIFNSMQ 633 (748)
Q Consensus 624 ~A~~~~~~~~ 633 (748)
+|+.+|++..
T Consensus 172 ~Ai~iyeqva 181 (288)
T KOG1586|consen 172 KAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHH
Confidence 9999999883
No 325
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.66 E-value=51 Score=37.04 Aligned_cols=28 Identities=7% Similarity=0.246 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 041741 472 CWNSMIAGLSLNSLDIEAFMFFKQMRQN 499 (748)
Q Consensus 472 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 499 (748)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4788899999999999999999988764
No 326
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.56 E-value=21 Score=32.66 Aligned_cols=166 Identities=10% Similarity=-0.029 Sum_probs=79.9
Q ss_pred HHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChH
Q 041741 547 IEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVD 623 (748)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 623 (748)
..+|....++++|...+.+..+ .|...|. ..+.++.|.-+.+++.+. +--...|+.....|...|..+
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcc
Confidence 3445555666666655544331 2221111 112234444444444441 111123444555566666666
Q ss_pred HHHHHHHHhhh-hhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041741 624 VGVEIFNSMQL-DHGVEPI--LDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEEL 700 (748)
Q Consensus 624 ~A~~~~~~~~~-~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 700 (748)
.|-..+++.-+ .....|+ ...|..-.......++...|.+++.+ ....+.+...+++|-..+.+-
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk------------~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK------------CSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH------------hhhHhhhhHHhhHHHHHHHHh
Confidence 65555554411 0122333 12222222333333344444444333 445666666776666665554
Q ss_pred Hhc------CCCCCcchHHHhHHHhhcCChHHHHHHHHH
Q 041741 701 FRL------DPKNSAPYSLLANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 701 ~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (748)
... .|.-...+....-+|.-..|+..|.+.++.
T Consensus 177 ~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 177 GVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred hhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 432 232223466667777778899999988875
No 327
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.53 E-value=5.9 Score=34.85 Aligned_cols=97 Identities=11% Similarity=-0.018 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCC--CChhHHHH-
Q 041741 573 TWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDI--TFVAILTACSHSGLVDVGVEIFNSMQLDHGVE--PILDHYTC- 647 (748)
Q Consensus 573 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~- 647 (748)
.+..++.-|.+.|+.+.|++.+.++.+....|... .+-.+++.+...+++..+.....++....... ++...-..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45556667777777777777777777654444442 34556666667777777776666652211111 11111111
Q ss_pred -HHHHHHhcCChHHHHHHHhhCC
Q 041741 648 -MIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 648 -l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
-+-.+...+++.+|.+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 1222345688888888877664
No 328
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.26 E-value=7.3 Score=34.12 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=18.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 041741 683 SCRLHANVRLAKRAAEELFRLDPKNSAPYSLL 714 (748)
Q Consensus 683 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 714 (748)
+|-....++.|++-|+++++.+|....+-...
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 34445566666666666666666544443333
No 329
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.24 E-value=18 Score=31.15 Aligned_cols=40 Identities=8% Similarity=0.198 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhc
Q 041741 323 IELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFD 362 (748)
Q Consensus 323 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 362 (748)
.+.++.+...|++|+...+..++..+.+.|+......++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3455566667777777777777777666666555444443
No 330
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.03 E-value=8.8 Score=34.84 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=35.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
+...+...|++-++++.....+..+|.|..+|+..+.+....=+.++|..-+....+
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 334445556666666666666666666666666666666666666666666655443
No 331
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.98 E-value=54 Score=36.27 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=28.6
Q ss_pred HHcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 041741 582 AQNGYGDEAVRLYKDMIAS----GVKPDDITFVAILTACSHSGLVDVGVEIFNSM 632 (748)
Q Consensus 582 ~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 632 (748)
...|+++.|.++.+..... -..+....+..+..+..-.|++++|..+.+..
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQA 523 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHH
Confidence 3456666666666665543 11122234555555666667777777666655
No 332
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.61 E-value=32 Score=33.17 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=10.8
Q ss_pred hcCChhHHHHHHHHHHhc
Q 041741 315 QKYQSTKAIELLQRMKSC 332 (748)
Q Consensus 315 ~~~~~~~a~~~~~~m~~~ 332 (748)
+.|+.+.|..++.+....
T Consensus 5 ~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhCCHHHHHHHHHHhhhH
Confidence 456666666666666543
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.51 E-value=0.98 Score=28.04 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=23.0
Q ss_pred cchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 709 APYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.++..|+.+|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3577899999999999999999998765
No 334
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.40 E-value=6.8 Score=39.16 Aligned_cols=142 Identities=16% Similarity=0.170 Sum_probs=95.0
Q ss_pred HHHHHHcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcC
Q 041741 578 IHGYAQNGYGDEAV-RLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAG 656 (748)
Q Consensus 578 ~~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 656 (748)
|.-....|+.-.|- +++.-+....-.|+...+...+ +...|+++.+...+.... .-+-....+...+++...+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~--~~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVE--KIIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchh--hhhcCCchHHHHHHHhhhchh
Confidence 34445567776665 4555555544455555444443 567899999998887763 223344566778888889999
Q ss_pred ChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCcchHHHhHH-HhhcCC
Q 041741 657 HFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK-NSAPYSLLANI-YSSLGR 723 (748)
Q Consensus 657 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~-~~~~g~ 723 (748)
++++|...-.-|. .-.++.+......+....|-++++...+++++.++|+ +..+...|... |+.-|+
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 9999999888885 2235666555566677788899999999999999875 44454444443 444443
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.16 E-value=2.6 Score=37.35 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 041741 644 HYTCMIDCLGRAGHFHEAEMLIDEM-PCKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA 709 (748)
Q Consensus 644 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 709 (748)
+....+..+.+.+..++|+...+.- ..+| +...-..++..++..|++++|..-++-+-++.|++..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3445667788889999999887654 3555 5667778888889999999999999999999997543
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.13 E-value=1.5 Score=24.81 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 679 VLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 679 ~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
.+...+...|+++.|...++++++.+|
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 333344444444444444444444444
No 337
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.90 E-value=4.8 Score=33.49 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=56.5
Q ss_pred HHHHHHHHH---hcCCCChHHHHHHHHHhhhhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHH
Q 041741 607 ITFVAILTA---CSHSGLVDVGVEIFNSMQLDHGVEPI---LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEV 679 (748)
Q Consensus 607 ~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 679 (748)
...+.|+.. -...++.+++..++..|. -+.|+ ..++ -+..+...|++++|..+++++. ..+....-..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA 82 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSAGAPPYGKA 82 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence 344444443 355789999999999885 44555 4444 3455778999999999999997 3334344444
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHhcCC
Q 041741 680 LLSSCR-LHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 680 l~~~~~-~~~~~~~a~~~~~~~~~~~p 705 (748)
|...|. ..||++ =......+++..+
T Consensus 83 L~A~CL~al~Dp~-Wr~~A~~~le~~~ 108 (153)
T TIGR02561 83 LLALCLNAKGDAE-WHVHADEVLARDA 108 (153)
T ss_pred HHHHHHHhcCChH-HHHHHHHHHHhCC
Confidence 554444 445443 2344444444444
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.72 E-value=1.5 Score=27.76 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=21.3
Q ss_pred HHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 712 SLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
..|+.+|...||.+.|++.+++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46888899999999999988887753
No 339
>PRK12798 chemotaxis protein; Reviewed
Probab=84.95 E-value=45 Score=33.46 Aligned_cols=179 Identities=12% Similarity=0.111 Sum_probs=119.1
Q ss_pred cCCHHHHHHHhhhcCC----CCHHHHHHHHHHHH-HcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHhcCCCChH
Q 041741 553 CGDIYGARQFFDMMHG----KNTVTWNEMIHGYA-QNGYGDEAVRLYKDMIASGVKPDDI----TFVAILTACSHSGLVD 623 (748)
Q Consensus 553 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~ 623 (748)
.|+-.+|.+.+..+.. +....+-.|+.+-. ...+..+|+++|+...=. .|-.. .+..-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888888763 34556666666544 456889999999987763 55543 3444455667889999
Q ss_pred HHHHHHHHhhhhhCCCCChhHHH-HHHHHHHhcCC---hHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 041741 624 VGVEIFNSMQLDHGVEPILDHYT-CMIDCLGRAGH---FHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEE 699 (748)
Q Consensus 624 ~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 699 (748)
++..+-.+-...+...|-...|. .++..+.+.++ .+.-..++..|.......+|..+.......|+.+.|.-..++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88887776666777777655444 34444554443 334444555555233456777888888889999999999999
Q ss_pred HHhcCCCCCcchHHHhHHH-----hhcCChHHHHHHHHHH
Q 041741 700 LFRLDPKNSAPYSLLANIY-----SSLGRWDDLRAVRELM 734 (748)
Q Consensus 700 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~ 734 (748)
+..+.+ ....-...+.+| .-..+.++|.+.++.+
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 999874 344444444444 3446677777777654
No 340
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.55 E-value=7.7 Score=34.14 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc--chHHHHHHHhccccCcHHHhHHHHHH
Q 041741 87 SWNNLISALVRNGLEEKALSVYNKMSNEGFVPTH--ITLASVFKASTALLDVEHGRRCHGLV 146 (748)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~ 146 (748)
.+..+..-|.+.|+.+.|++.|.++++....|.. ..+..+++.....+++..+.......
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4666777777777777777777777765433321 23344444444445554444444333
No 341
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.06 E-value=15 Score=28.23 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHH
Q 041741 589 EAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMID 650 (748)
Q Consensus 589 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 650 (748)
+..+-++.+....+.|++......+++|.+.+++..|+++++.+..+.+.+ ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 355666666777788888888888888888888888888888885444433 335655554
No 342
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.99 E-value=55 Score=33.65 Aligned_cols=173 Identities=10% Similarity=0.061 Sum_probs=94.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 041741 539 DIFVGSALIEMYCKCGDIYGARQFFDMMHG--KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTAC 616 (748)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 616 (748)
+-...-+++..+...-++.-.+.+..++.. .+-..|..++++|..+ ..+.-..+|+++.+.. -|......-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHH
Confidence 334444555566655555555555555542 4555677777777777 4566777777777753 3333333333333
Q ss_pred cCCCChHHHHHHHHHhhhhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCCHhHHHHHHHHHHh
Q 041741 617 SHSGLVDVGVEIFNSMQLDHGVEPI------LDHYTCMIDCLGRAGHFHEAEMLIDEMP----CKDDPVIWEVLLSSCRL 686 (748)
Q Consensus 617 ~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~ 686 (748)
...++.+++..+|.++.. .+.|. ...|..+... -..+.+....+..++. .......+..+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 333677777777777632 22331 1123323221 1345555555555553 11223333444445666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcchHHHhHHH
Q 041741 687 HANVRLAKRAAEELFRLDPKNSAPYSLLANIY 718 (748)
Q Consensus 687 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 718 (748)
..++.+|.++++..++.+.+|..+...+..-+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 67788888888887777777766655554443
No 343
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.81 E-value=2.4 Score=43.33 Aligned_cols=128 Identities=13% Similarity=0.030 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 590 AVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 590 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
+-.++.-|... +.|--.++|...-.....|+...|...+...........++ ....|+..+.+.|...+|-.++.+..
T Consensus 592 ~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v-~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 592 GSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDV-PLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcc-cHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 44444444432 23333344433333455688888888877664332222222 34567777888888888887765543
Q ss_pred --CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHh
Q 041741 670 --CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYS 719 (748)
Q Consensus 670 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 719 (748)
....|.+...+...+....++++|++.+++++.++|+++.+...|..+-.
T Consensus 670 ~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 670 AINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 33456777778888888889999999999999999988888766655433
No 344
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.59 E-value=1.3e+02 Score=37.72 Aligned_cols=108 Identities=11% Similarity=0.048 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--C--------CCCHhH
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--C--------KDDPVI 676 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~--------~~~~~~ 676 (748)
.+|....+.....|.++.|...+-... +.. . ...+...++.+...|+...|+.++++.. . ++.|..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~-e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAK-ESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhh-hcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 568888888888999998887765552 222 2 3446667888889999999998887652 1 112332
Q ss_pred HHHHHHH---------HHhcCC--HHHHHHHHHHHHhcCCCCCcchHHHhHHH
Q 041741 677 WEVLLSS---------CRLHAN--VRLAKRAAEELFRLDPKNSAPYSLLANIY 718 (748)
Q Consensus 677 ~~~l~~~---------~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 718 (748)
.+.++.. ....|+ .+.....|..+.+..|+....++++|.-|
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 2222211 122333 35567888999999998878888887443
No 345
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.08 E-value=78 Score=34.76 Aligned_cols=194 Identities=11% Similarity=0.110 Sum_probs=110.6
Q ss_pred CCCCCcchhhHHHHHHHccCCchhhhhhhhcCCCCchhhhhHHHHHhh-cCCChhHHHHhhccCCC----CCch-----h
Q 041741 18 GLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMPHKDIYSWNAILSAQC-KSDDLEFAYKLFDEMPE----RNVV-----S 87 (748)
Q Consensus 18 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~----~~~~-----~ 87 (748)
.-+.+...|..||..-.++ .+.+.+-+.--+..+..++..+.+.+. ...+++.|...+++... ++.. .
T Consensus 25 ~~~~~l~~Y~kLI~~ai~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~ 102 (608)
T PF10345_consen 25 KSEEQLKQYYKLIATAIKC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRC 102 (608)
T ss_pred CChhhHHHHHHHHHHHHHH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3344666788888776665 222222111111234556777777776 67889999988886532 2221 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchH----HHH-HHHhccccCcHHHhHHHHHHHHHC---CCCcHhHHH
Q 041741 88 WNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITL----ASV-FKASTALLDVEHGRRCHGLVIKIG---LDKNIYVAN 159 (748)
Q Consensus 88 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 159 (748)
...+++.+.+.+... |...+++..+.--......| ..+ +..+...+|...|.+.++.+...- ..|-..++-
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 234566666666555 88888887664212112222 222 222223378888888888777654 455556666
Q ss_pred HHHHHHHh--cCChhhHHHHHhcCC----C---------CCeehHHHHHHHH--HcCCCHHHHHHHHHHHHH
Q 041741 160 ALLSLYAK--CGWTKHAVPVFEEMS----E---------PNEVTFTAMMSGL--AKTDRVVEALEMFRLMIR 214 (748)
Q Consensus 160 ~li~~~~~--~g~~~~a~~~~~~~~----~---------~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~ 214 (748)
.++.+... .+..+++.+.++++. . |...+|..++..+ ...|++..+...++++.+
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666553 454556666555441 1 2344566666544 467787777777766654
No 346
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.06 E-value=52 Score=35.52 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=37.1
Q ss_pred ChHHHHHHHhhCCCCCCHhHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc-CChHHHHHHH
Q 041741 657 HFHEAEMLIDEMPCKDDPVIWEVLLSSCR----LHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSL-GRWDDLRAVR 731 (748)
Q Consensus 657 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~ 731 (748)
+...|.++|......-.......+...+. ...+.+.|...++++-+.+ ++.+...++..+.-. ++++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHH
Confidence 44566666665542222222222222221 1225666666666666655 334444444443222 5666555555
Q ss_pred HHHHhc
Q 041741 732 ELMSEN 737 (748)
Q Consensus 732 ~~~~~~ 737 (748)
..+.+.
T Consensus 421 ~~~a~~ 426 (552)
T KOG1550|consen 421 LYLAEL 426 (552)
T ss_pred HHHHHh
Confidence 544443
No 347
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.44 E-value=9.6 Score=28.89 Aligned_cols=63 Identities=11% Similarity=0.010 Sum_probs=44.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHH
Q 041741 100 LEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLS 163 (748)
Q Consensus 100 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (748)
+.-++.+-++.+....+.|++....+.+++|.+.+|+..|.++++-.+..... ....|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHHH
Confidence 34456677777777778888888888899998889999888888877643211 2334555443
No 348
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.95 E-value=9.5 Score=28.91 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHH
Q 041741 589 EAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMI 649 (748)
Q Consensus 589 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 649 (748)
++.+-++.+....+.|++....+.+++|-+.+++..|+.+++....+.+. +...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 45566666777777888888888888888888888888888877323332 333454444
No 349
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.58 E-value=5.4 Score=36.34 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHhcCCHHH-------HHHHHHHHHhcCC--C----CCcchHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 675 VIWEVLLSSCRLHANVRL-------AKRAAEELFRLDP--K----NSAPYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 675 ~~~~~l~~~~~~~~~~~~-------a~~~~~~~~~~~p--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
..+..+.+.|+..|+.+. |.+.|+++.+... . .....+.+|.++.+.|+.++|.+.+.++...
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 344556666777776443 4444444444332 1 1345777888888888888888888887653
No 350
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.19 E-value=9.3 Score=29.32 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHH
Q 041741 103 KALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLS 163 (748)
Q Consensus 103 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (748)
+..+-++.+....+.|++......+++|.+.+|+..|.++++.++..-.. ....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~-~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN-KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-hHHHHHHHHH
Confidence 55666777777778888888888888888888888888888877655322 2225555554
No 351
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.84 E-value=52 Score=30.55 Aligned_cols=181 Identities=11% Similarity=0.045 Sum_probs=110.0
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHH---HHHHHHHhhcCCCCchhHHHHHHHHHHh-----CCCCchHHHHHHHHHHHhc
Q 041741 482 LNSLDIEAFMFFKQMRQNEMYPTQF---SFATVLSSCAKLSSSFQGRQVHAQIEKD-----GYVNDIFVGSALIEMYCKC 553 (748)
Q Consensus 482 ~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 553 (748)
+...+++|+.-|.+..+........ ....++....+.+++++....+.++... ...-+....|+++..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4457899999999988753333333 4456678888999999988888877532 2223556667777766666
Q ss_pred CCHHHHHHHhhhcCC-----CCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC----H-------HHHHHHH
Q 041741 554 GDIYGARQFFDMMHG-----KNTV----TWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPD----D-------ITFVAIL 613 (748)
Q Consensus 554 g~~~~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~-------~~~~~l~ 613 (748)
.+.+--.++++.-.+ .|.. +-..|...|...+.+.+..++++++....-..+ . ..|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 665555555543221 2222 234567777777888888888887776532211 1 2355555
Q ss_pred HHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHH----HHHHHhcCChHHHH
Q 041741 614 TACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCM----IDCLGRAGHFHEAE 662 (748)
Q Consensus 614 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~ 662 (748)
+.|..+.+-.+-..++++........|.+.....+ +.+..+.|.+++|-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 66666666666667777665444555655444333 23345667777665
No 352
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.80 E-value=26 Score=35.49 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=8.4
Q ss_pred HcCChhHHHHHHHHHHHc
Q 041741 583 QNGYGDEAVRLYKDMIAS 600 (748)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~ 600 (748)
..+++..|.++++.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 344444444444444443
No 353
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.06 E-value=28 Score=36.18 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC----------CC------------C-CHhHH---HHHHHHHHhcCCHHHHHH
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMP----------CK------------D-DPVIW---EVLLSSCRLHANVRLAKR 695 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~------------~-~~~~~---~~l~~~~~~~~~~~~a~~ 695 (748)
+.++..+++++...|+.+.|..++++.. +. | +...| ...+..+.+.|=+..|.+
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE 363 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 4455566677777777776666665431 11 1 12222 233445667788889999
Q ss_pred HHHHHHhcCCC-CCcchHHHhHHHh-hcCChHHHHHHHHHHHh-cCCCCCCCCCC
Q 041741 696 AAEELFRLDPK-NSAPYSLLANIYS-SLGRWDDLRAVRELMSE-NCIVKDPAYSL 747 (748)
Q Consensus 696 ~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~~~~ 747 (748)
+.+-+++++|. ||.....+.+.|+ ++.+++=-++..+..+. +.+..-|.|+|
T Consensus 364 ~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y 418 (665)
T KOG2422|consen 364 WCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY 418 (665)
T ss_pred HHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH
Confidence 99999999988 8888888888775 44666666666666643 56666666554
No 354
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.00 E-value=12 Score=35.83 Aligned_cols=91 Identities=16% Similarity=0.102 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC--CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhH
Q 041741 643 DHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDD----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLAN 716 (748)
Q Consensus 643 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 716 (748)
.+|..=++-|.+.+++..|...|.+.. ..+| .+.|..-..+-...|++..|+.-..+++..+|.+..+++.=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 445566778889999999999998774 2233 3445555555566789999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHH
Q 041741 717 IYSSLGRWDDLRAVREL 733 (748)
Q Consensus 717 ~~~~~g~~~~A~~~~~~ 733 (748)
++....++++|....++
T Consensus 162 c~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999997766655543
No 355
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.97 E-value=15 Score=30.06 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=50.8
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHhhCC--CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcch
Q 041741 639 EPILDHYTCMIDCLGRAGHFH---EAEMLIDEMP--CKD--DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPY 711 (748)
Q Consensus 639 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 711 (748)
.++..+--.++.++.+..+.+ +-+.+++++. ..| ....+..|.-++.+.++++++..+.+.+++.+|+|.++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 566666667778888776554 4445666554 223 233444566678889999999999999999999886654
Q ss_pred H
Q 041741 712 S 712 (748)
Q Consensus 712 ~ 712 (748)
.
T Consensus 109 ~ 109 (149)
T KOG3364|consen 109 E 109 (149)
T ss_pred H
Confidence 3
No 356
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.02 E-value=5.7 Score=24.40 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041741 573 TWNEMIHGYAQNGYGDEAVRLYKDMIA 599 (748)
Q Consensus 573 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 599 (748)
+++.|...|...|++++|..++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455555666666666666666655543
No 357
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.52 E-value=3.6 Score=22.98 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=24.5
Q ss_pred cchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 709 APYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.++..++.++...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999998654
No 358
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.44 E-value=2.1 Score=42.94 Aligned_cols=82 Identities=16% Similarity=0.028 Sum_probs=43.4
Q ss_pred HHhcCChHHHHHHHhhCC-CCCCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHH
Q 041741 652 LGRAGHFHEAEMLIDEMP-CKDDPVIWEVL-LSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRA 729 (748)
Q Consensus 652 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 729 (748)
....++++.|..++.+.. ..|+...+... ..++.+.+++..|..-+.++++.+|....+|..-|.++.+.+.+.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 344455555555555443 33433333222 2344555555566666666666666555566666666666666666655
Q ss_pred HHHH
Q 041741 730 VREL 733 (748)
Q Consensus 730 ~~~~ 733 (748)
.|+.
T Consensus 94 ~l~~ 97 (476)
T KOG0376|consen 94 DLEK 97 (476)
T ss_pred HHHH
Confidence 5554
No 359
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.56 E-value=25 Score=36.68 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 041741 472 CWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYC 551 (748)
Q Consensus 472 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 551 (748)
-|..|.++....+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. |.-.-+|.
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~ 732 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYF 732 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHH
Confidence 344455555555555555554443332 223333344444444443443444444421 22334456
Q ss_pred hcCCHHHHHHHhhhcC
Q 041741 552 KCGDIYGARQFFDMMH 567 (748)
Q Consensus 552 ~~g~~~~A~~~~~~~~ 567 (748)
..|+++++.+++..-.
T Consensus 733 l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 733 LSGDYEECLELLISTQ 748 (794)
T ss_pred HcCCHHHHHHHHHhcC
Confidence 6777777777776543
No 360
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.46 E-value=1.3e+02 Score=33.19 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHHhcC---CCCCcchH------HHhHHHhhcCChHHHHHHHHHHH
Q 041741 687 HANVRLAKRAAEELFRLD---PKNSAPYS------LLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 687 ~~~~~~a~~~~~~~~~~~---p~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
.|+..+.......+.... |+....+. .+...|...|+.++|....+++.
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677777666555566543 33344333 55666888999999999888754
No 361
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.10 E-value=67 Score=30.21 Aligned_cols=199 Identities=9% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 041741 476 MIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGD 555 (748)
Q Consensus 476 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 555 (748)
+.+-..+.+++++|+..+.++...|+..+..+. .....+...+...|...|+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~----------------------------nEqE~tvlel~~lyv~~g~ 60 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL----------------------------NEQEATVLELFKLYVSKGD 60 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh----------------------------hHHHHHHHHHHHHHHhcCC
Q ss_pred HHHHHHHhhhcCC--------CCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCCCHHHHHH-----HHHHhcCCCC
Q 041741 556 IYGARQFFDMMHG--------KNTVTWNEMIHGYAQNGY-GDEAVRLYKDMIASGVKPDDITFVA-----ILTACSHSGL 621 (748)
Q Consensus 556 ~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~-----l~~~~~~~~~ 621 (748)
...-.++.....+ +......+|+.-+-...+ ++..+.++....+--...+...+.. ++..+.+.|.
T Consensus 61 ~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~ 140 (421)
T COG5159 61 YCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK 140 (421)
T ss_pred cchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred hHHHHHHHHHhhhhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCC-------CCCCHhHHHHHHHH--HHhcC
Q 041741 622 VDVGVEIFNSMQLDHGVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEMP-------CKDDPVIWEVLLSS--CRLHA 688 (748)
Q Consensus 622 ~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~l~~~--~~~~~ 688 (748)
+.+|+.+...+..+..--.| ...+..=..+|..-.+..++..-+.... .+|....-..++++ .+...
T Consensus 141 YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~ 220 (421)
T COG5159 141 YSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDR 220 (421)
T ss_pred HHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccc
Q ss_pred CHHHHHHHHHHHHh
Q 041741 689 NVRLAKRAAEELFR 702 (748)
Q Consensus 689 ~~~~a~~~~~~~~~ 702 (748)
|+..|...|-++++
T Consensus 221 dyktA~SYF~Ea~E 234 (421)
T COG5159 221 DYKTASSYFIEALE 234 (421)
T ss_pred cchhHHHHHHHHHh
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.06 E-value=12 Score=38.62 Aligned_cols=134 Identities=13% Similarity=0.019 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHhcCC--CChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHH-hcCChHHHHHHHhhCC-CCCC--HhH
Q 041741 603 KPDDITFVAILTACSHS--GLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLG-RAGHFHEAEMLIDEMP-CKDD--PVI 676 (748)
Q Consensus 603 ~p~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~-~~~~--~~~ 676 (748)
-|+..+...++.-.... ...+-+-.++..| ...+-|.=.++ .++-.|. ..|+...|.+-+.... .+|. .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~--~~~~~p~w~~l-n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAI--NKPNAPIWLIL-NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHh--cCCCCCeEEEe-ecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 35666655554433222 2334444555555 22333332222 2333444 4799999999887764 4553 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 677 WEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 677 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
+..|.......|..-.|-..+.+++.+....|.++..++++|....+.+.|++.++.+.....
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 667888888888888999999999999888889999999999999999999999998765433
No 363
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=75.97 E-value=3.6 Score=24.22 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHhcCChHHH
Q 041741 642 LDHYTCMIDCLGRAGHFHEA 661 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A 661 (748)
...|..++.+|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44444555555555555544
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.22 E-value=26 Score=26.86 Aligned_cols=78 Identities=10% Similarity=-0.011 Sum_probs=52.9
Q ss_pred cHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 041741 136 VEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMIRK 215 (748)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 215 (748)
.++|.-+-+.+...+-. ...+-..-+..+...|+|++|..+.+....||...|-.+.. .+.|-.+.+..-+..|-.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555544422 22233334455678999999999999998899999987765 4577777777777777766
Q ss_pred C
Q 041741 216 A 216 (748)
Q Consensus 216 g 216 (748)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 4
No 365
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.11 E-value=1e+02 Score=31.56 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCCCCCCCC
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCIVKDPAY 745 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 745 (748)
-...+....+...++.-.+-++....+++.....-++.++..|++..|.+.+-. .+|.++||+
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g~ 274 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAGG 274 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccCc
Confidence 344556666777788888888888778888899999999999999999987654 577777763
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.47 E-value=52 Score=34.05 Aligned_cols=199 Identities=12% Similarity=0.064 Sum_probs=106.1
Q ss_pred HHHHHHHHhCCCCCcch--hhHHHHHHHccCCchhhhhhhhcCCCCchh--hhhHHHHHhhcCCChhHHHHhhccCCCCC
Q 041741 9 LLHAHILRNGLFDDTFL--CNRLIELYSKCNNTHSAQHLFDKMPHKDIY--SWNAILSAQCKSDDLEFAYKLFDEMPERN 84 (748)
Q Consensus 9 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 84 (748)
.+...+++.|+.|+... -.+.+...+..|+.+-+.-+++.-..++.. .....+...+..|+.+.+..+++.-...+
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 95 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFAD 95 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccc
Confidence 45667778898887654 456677777888888777777665443322 11234555667788888888877543211
Q ss_pred ch---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcch--HHHHHHHhccccCcHHHhHHHHHHHHHCCCCcH---h
Q 041741 85 VV---SWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHIT--LASVFKASTALLDVEHGRRCHGLVIKIGLDKNI---Y 156 (748)
Q Consensus 85 ~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~ 156 (748)
.. .-.+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.++.+ .+.|..++. .
T Consensus 96 ~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~ 167 (413)
T PHA02875 96 DVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIEDCC 167 (413)
T ss_pred ccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCCCC
Confidence 10 112233334455554 45556666676665432 12334445556666554444 344543322 1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCCCCCee---hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 041741 157 VANALLSLYAKCGWTKHAVPVFEEMSEPNEV---TFTAMMSGLAKTDRVVEALEMFRLMIRKAVSID 220 (748)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 220 (748)
-.+ .+...+..|+.+-+.-+++.-..++.. ...+++...+..|+. ++.+.+.+.|..++
T Consensus 168 g~T-pL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n 229 (413)
T PHA02875 168 GCT-PLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCN 229 (413)
T ss_pred CCC-HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcc
Confidence 122 233445567777666666655443322 112333333445554 34555566666554
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.09 E-value=46 Score=27.90 Aligned_cols=80 Identities=10% Similarity=0.112 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCC---------CCCcchHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 041741 342 INMLVACVRSGDIKTGREMFDSMP---------SPSVSSWNAMLSSYSQSEN-HKEAIKLFREMQFRGVKPDRTTLAIIL 411 (748)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ll 411 (748)
+.++.-....++......+++.+. ..+...|.+++.+..+... ---+..+|.-|++.+.++++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344444444445554444444442 1456778888888866665 445678888888888899999999999
Q ss_pred HHhhccCChH
Q 041741 412 SSCAAMGILE 421 (748)
Q Consensus 412 ~~~~~~~~~~ 421 (748)
.+|.+....+
T Consensus 123 ~~~l~g~~~~ 132 (145)
T PF13762_consen 123 KAALRGYFHD 132 (145)
T ss_pred HHHHcCCCCc
Confidence 9887764433
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.71 E-value=27 Score=31.03 Aligned_cols=74 Identities=15% Similarity=-0.030 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHh---CCCCchHHHHHHHHHHHhcCCHHHHH
Q 041741 486 DIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKD---GYVNDIFVGSALIEMYCKCGDIYGAR 560 (748)
Q Consensus 486 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (748)
-+.|...|-.+...+.--++.....|...|. ..|.+++..++-...+. +-.+++..+.+|+..|.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3566666666666554444444444443333 55667777666665554 22556677777777777777766664
No 369
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.99 E-value=1.4e+02 Score=32.22 Aligned_cols=77 Identities=10% Similarity=-0.067 Sum_probs=46.4
Q ss_pred ChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc-C--ChHHHHH
Q 041741 657 HFHEAEMLIDEMPCKDDPVIWEVLLSSCRL----HANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSL-G--RWDDLRA 729 (748)
Q Consensus 657 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~ 729 (748)
+.+.+...+.+...+-++.....+...+.. ..+++.|...+..+-+.. +.....++..+-.- | ++..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 445555566555544455555555544332 236777777777776665 67777777777432 2 2577777
Q ss_pred HHHHHHh
Q 041741 730 VRELMSE 736 (748)
Q Consensus 730 ~~~~~~~ 736 (748)
+|....+
T Consensus 531 ~~~~~~~ 537 (552)
T KOG1550|consen 531 YYDQASE 537 (552)
T ss_pred HHHHHHh
Confidence 7777655
No 370
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=72.88 E-value=1.1e+02 Score=30.67 Aligned_cols=94 Identities=9% Similarity=0.031 Sum_probs=56.0
Q ss_pred HHhcCCCChHHHHHHHHHhhhhhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhCCCCCC--HhHH----HHHHHH
Q 041741 614 TACSHSGLVDVGVEIFNSMQLDHGVEPIL----DHYTCMIDCLGRAGHFHEAEMLIDEMPCKDD--PVIW----EVLLSS 683 (748)
Q Consensus 614 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~----~~l~~~ 683 (748)
.++...|+...-...+........+.-|. ...+.+.+.|...+-++.|..++.+...+.. ..-| ..+...
T Consensus 177 l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrI 256 (493)
T KOG2581|consen 177 LSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRI 256 (493)
T ss_pred HHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhH
Confidence 34455566555555555544444444332 3355667777778888888888887762211 1111 112223
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC
Q 041741 684 CRLHANVRLAKRAAEELFRLDPKN 707 (748)
Q Consensus 684 ~~~~~~~~~a~~~~~~~~~~~p~~ 707 (748)
...++++..|.+.+-+++...|++
T Consensus 257 kaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 257 KAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHhhcchhHHHHHHHHHHHhCcch
Confidence 445678888888888888888853
No 371
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.86 E-value=95 Score=30.11 Aligned_cols=82 Identities=13% Similarity=0.030 Sum_probs=36.8
Q ss_pred CCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHHHHhhhcCCC-CHHHHHHHHHHHHH----cCCh
Q 041741 517 KLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCK----CGDIYGARQFFDMMHGK-NTVTWNEMIHGYAQ----NGYG 587 (748)
Q Consensus 517 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~ 587 (748)
..+++..+...+......+.. .....+...|.. ..+...|..+|....+. ++.....|...|.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence 345555566666555543321 223333333332 23455555555543332 23333334444433 2245
Q ss_pred hHHHHHHHHHHHcC
Q 041741 588 DEAVRLYKDMIASG 601 (748)
Q Consensus 588 ~~a~~~~~~m~~~~ 601 (748)
.+|...++++.+.|
T Consensus 130 ~~A~~~~~~Aa~~g 143 (292)
T COG0790 130 VKALKYYEKAAKLG 143 (292)
T ss_pred HHHHHHHHHHHHcC
Confidence 55555555555555
No 372
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.64 E-value=35 Score=35.70 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=60.7
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHH
Q 041741 548 EMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVE 627 (748)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 627 (748)
....+.|+++.|.++..+. .+..-|..|..+....+++..|.+.|.+..+ |..|+-.+...|+-+....
T Consensus 645 elal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 3445667777777765543 3556677777777778888777777776655 3444555555555544333
Q ss_pred HHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 628 IFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
+-... +..|. -+ .-..+|...|+++++.+++.+-.
T Consensus 714 la~~~-~~~g~-~N-----~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 714 LASLA-KKQGK-NN-----LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHH-Hhhcc-cc-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence 33333 22222 11 12235556777777777776553
No 373
>PRK10941 hypothetical protein; Provisional
Probab=72.27 E-value=20 Score=34.06 Aligned_cols=71 Identities=10% Similarity=-0.050 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHh
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLA 715 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 715 (748)
...+-.+|.+.++++.|+...+.+. .+.++.-+..-+..+.+.|.+..|..-++.-++.-|++|.+...-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 4456677888889999998888885 4456777877777888889999999999999999888876654443
No 374
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.89 E-value=12 Score=28.65 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=37.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC---------CcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 684 CRLHANVRLAKRAAEELFRLDPKN---------SAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 684 ~~~~~~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
..+.||+..|.+.+.+.......+ ..+...++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345678888877777776653221 13456678888888999999988888755
No 375
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.01 E-value=56 Score=31.21 Aligned_cols=139 Identities=12% Similarity=0.074 Sum_probs=81.7
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHccCCchhhhhhhhcC-------CC-------CchhhhhHHHHHhhcCCChhHHHH
Q 041741 10 LHAHILRNGLFDDTFLCNRLIELYSKCNNTHSAQHLFDKM-------PH-------KDIYSWNAILSAQCKSDDLEFAYK 75 (748)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~-------~~~~~~~~l~~~~~~~~~~~~a~~ 75 (748)
+...|...+++|..+-| .|..+|.....|..-....-++ +. ..+.+....+..-....+++.+..
T Consensus 7 Lr~~I~~~~l~p~~rr~-~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~ 85 (418)
T KOG4570|consen 7 LRRQIVLPQLSPAGRRY-LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEY 85 (418)
T ss_pred HHHHHhhhcCCchhcch-hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHH
Confidence 44556667777765433 2444444444443322222111 11 222233444444455667888887
Q ss_pred hhccCCC-CCc-----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHH
Q 041741 76 LFDEMPE-RNV-----VSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKI 149 (748)
Q Consensus 76 ~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 149 (748)
.+-++.. |+. .+-.+.++.+. .-+++.++.++..-++-|+-||..+++.+|..+.+.+++.+|.++.-.|...
T Consensus 86 ~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 86 YLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7776653 221 11223344333 3366788888888888888888888888888888888888888877777666
Q ss_pred C
Q 041741 150 G 150 (748)
Q Consensus 150 ~ 150 (748)
.
T Consensus 165 e 165 (418)
T KOG4570|consen 165 E 165 (418)
T ss_pred H
Confidence 4
No 376
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=70.56 E-value=15 Score=22.01 Aligned_cols=28 Identities=18% Similarity=-0.087 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCHHHHHHH--HHHHHhcCC
Q 041741 678 EVLLSSCRLHANVRLAKRA--AEELFRLDP 705 (748)
Q Consensus 678 ~~l~~~~~~~~~~~~a~~~--~~~~~~~~p 705 (748)
..+...+...|++++|.+. ++-+..++|
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3444445555555555555 334444444
No 377
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.88 E-value=1e+02 Score=31.67 Aligned_cols=42 Identities=12% Similarity=-0.089 Sum_probs=26.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSL 721 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 721 (748)
..-.+...|++-.|.+.+.++....-.||-.|..|+.+|...
T Consensus 341 cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 341 CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 334455666666677777666666655666666676666554
No 378
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=69.71 E-value=9.5 Score=35.82 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=38.7
Q ss_pred HHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHh
Q 041741 652 LGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLA 715 (748)
Q Consensus 652 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 715 (748)
..+.|+.++|..+|+... ..| .+..+..+....-..++.-+|.++|-+++.++|-|..++....
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 345677777777766543 233 4555555555555556667777777777777776665555443
No 379
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.05 E-value=11 Score=35.54 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=56.1
Q ss_pred cCCCchHHHHHHHHHHHhcCChhHHHHHhccCCC-CCc-----ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhh
Q 041741 267 GFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPE-RSV-----VSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVT 340 (748)
Q Consensus 267 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 340 (748)
|.+....+...++..-....+++++...+-++.. ++. .+-.+.+ -++-.-++++++-++..=.+.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~i-rlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWI-RLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHH-HHHHccChHHHHHHHhCcchhccccchhh
Confidence 4455555555566555556677777777666553 111 1111222 23334566677777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcc
Q 041741 341 SINMLVACVRSGDIKTGREMFDS 363 (748)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~ 363 (748)
++.+|..+.+.+++.+|.++...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHH
Confidence 77766666666666555554433
No 380
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.79 E-value=2e+02 Score=32.17 Aligned_cols=173 Identities=13% Similarity=0.110 Sum_probs=88.3
Q ss_pred HHHHHHccCCchhhhhhhhcCCCCchhhhhHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChhHHHHHH
Q 041741 29 LIELYSKCNNTHSAQHLFDKMPHKDIYSWNAILSAQCKSDDLEFAYKLFDEMPERNVVSWNNLISALVRNGLEEKALSVY 108 (748)
Q Consensus 29 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 108 (748)
.=+.|++.|.+++|+..-+.-+..=--++..-...|.+.+++..|.+++.++ ..+|..+.--+....+.+.-..++
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~~L~~~L 439 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQERALRTFL 439 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHHHHHHHH
Confidence 3456777888888887766552111123444556677778888888888776 444666666666666665333333
Q ss_pred HHHHhCCCCCCcchHHH-----HHHHh-ccccCcH----HHhHHHH----HH----H-HHCCCCcHhHHHHHHHHHHhcC
Q 041741 109 NKMSNEGFVPTHITLAS-----VFKAS-TALLDVE----HGRRCHG----LV----I-KIGLDKNIYVANALLSLYAKCG 169 (748)
Q Consensus 109 ~~m~~~~~~p~~~~~~~-----ll~~~-~~~~~~~----~a~~~~~----~~----~-~~~~~~~~~~~~~li~~~~~~g 169 (748)
.+=++ .++|...+-.. ++..+ .+.++.+ .+..-++ .. . ......+.....+..+.+...|
T Consensus 440 ~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~ 518 (911)
T KOG2034|consen 440 DKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHG 518 (911)
T ss_pred HHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHcc
Confidence 33222 24444333222 12211 1222222 1111111 11 0 0111112222333444445556
Q ss_pred ChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHH
Q 041741 170 WTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRL 211 (748)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 211 (748)
+.+....+-.-+ .-|..++..+.+.+.+++|++++..
T Consensus 519 ~~e~ll~fA~l~-----~d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 519 RQEELLQFANLI-----KDYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred CHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666555443332 2366777778888888888877655
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.69 E-value=12 Score=27.21 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=25.5
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcCCCChHHHHHH
Q 041741 583 QNGYGDEAVRLYKDMIASGVKPDD--ITFVAILTACSHSGLVDVGVEI 628 (748)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~ 628 (748)
..++.++|+..|+..++.-..|.. .++..++.+++..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666664322222 2455566666666666665544
No 382
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.64 E-value=25 Score=28.75 Aligned_cols=68 Identities=13% Similarity=-0.020 Sum_probs=51.3
Q ss_pred CCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC-CCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 671 KDDPVIWEVLLSSCRLHA---NVRLAKRAAEELFR-LDPK-NSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 671 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
.++..+...+.+++.++. |..+.+..++...+ ..|+ .-...+.|+-.+++.|+++.++++.+.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 455566666777776655 56777888888886 4444 44678999999999999999999998776543
No 383
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.28 E-value=9.4 Score=25.40 Aligned_cols=30 Identities=20% Similarity=0.062 Sum_probs=24.7
Q ss_pred chHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 710 PYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
.++.++-.+++.|++++|+++.+.+.+-.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 467899999999999999999999876443
No 384
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.81 E-value=11 Score=23.88 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=18.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC
Q 041741 309 MIAGYGQKYQSTKAIELLQRMKSCG 333 (748)
Q Consensus 309 l~~~~~~~~~~~~a~~~~~~m~~~g 333 (748)
+.++|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5667788888888888888877654
No 385
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=67.38 E-value=1.2e+02 Score=29.01 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=25.8
Q ss_pred hHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 041741 289 DSAEVIFSNLPERSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSG 352 (748)
Q Consensus 289 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 352 (748)
.-+.++|+.... ....+.++.++.+-+.-+.-+++ .+|+..+...+-..+...|
T Consensus 184 ~F~~~lFk~~~~--Ek~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 184 SFAVKLFKEWLV--EKDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred HHHHHHHHHHHh--hccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhh
Confidence 345555554331 11344555555554444444444 3666666555555444433
No 386
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.19 E-value=1.6e+02 Score=30.51 Aligned_cols=159 Identities=9% Similarity=0.068 Sum_probs=74.7
Q ss_pred CHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHH
Q 041741 504 TQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHG 580 (748)
Q Consensus 504 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 580 (748)
|.....+++..+.....+.-+..+..++...| .+...+..++++|... ..+.-..+|+++.+ .|++.-..|..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 44444455555555544444555544444433 2333444455555554 33444444443332 333333334443
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHh
Q 041741 581 YAQNGYGDEAVRLYKDMIASGVKPDD------ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGR 654 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 654 (748)
|-+ ++.+.+...|.++... +-|.. ..|.-+... -..+.+....+...+..+.|..--...+.-+-.-|..
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 333 4455555555555543 22211 123332221 1234455555555554444444444445555566666
Q ss_pred cCChHHHHHHHhhCC
Q 041741 655 AGHFHEAEMLIDEMP 669 (748)
Q Consensus 655 ~g~~~~A~~~~~~~~ 669 (748)
..++++|++++..+.
T Consensus 218 ~eN~~eai~Ilk~il 232 (711)
T COG1747 218 NENWTEAIRILKHIL 232 (711)
T ss_pred ccCHHHHHHHHHHHh
Confidence 777777777777553
No 387
>PRK11619 lytic murein transglycosylase; Provisional
Probab=67.08 E-value=2.1e+02 Score=31.67 Aligned_cols=421 Identities=10% Similarity=-0.002 Sum_probs=199.3
Q ss_pred HHhcCChhHHHHHhccCCCCCcccHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCHHHHH
Q 041741 282 YAKNGDMDSAEVIFSNLPERSVVSWNVMIAGYGQ--KYQSTKAIELLQRMKSCGFEPDEV-TSINMLVACVRSGDIKTGR 358 (748)
Q Consensus 282 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~ 358 (748)
..+.|++..+..+...+.......|-........ ....++....+++ ..-.|-.. .-...+..+.+.+++....
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~---~~~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRA---NPTLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHH---CCCCchHHHHHHHHHHHHHHccCHHHHH
Confidence 3467888888888877754333322222111111 2234444444433 22223222 2233344566778888887
Q ss_pred HHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHH--HHHHHhhcC-
Q 041741 359 EMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQV--HAASLKTAS- 435 (748)
Q Consensus 359 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~~~- 435 (748)
..+.. ...+...-.....+....|+.++|......+=..| ...+.....++..+...|.+...... +..+...+.
T Consensus 120 ~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~ 197 (644)
T PRK11619 120 AFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNT 197 (644)
T ss_pred HhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH
Confidence 74433 23444445566777788888877776666654443 23345556666666554443332211 111111110
Q ss_pred ----------Cch-hHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHH--hCCCchHHHHHHHHHHHCC-C
Q 041741 436 ----------HID-NYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLS--LNSLDIEAFMFFKQMRQNE-M 501 (748)
Q Consensus 436 ----------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~-~ 501 (748)
.++ ......++.++ .+...+...+.... ++...-..++.++. ...+.+.|..++....... .
T Consensus 198 ~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~ 273 (644)
T PRK11619 198 GLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKL 273 (644)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCC
Confidence 011 11111222222 12222222222221 11111111122222 2445577777877764432 3
Q ss_pred CCCHH--HHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHH
Q 041741 502 YPTQF--SFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNE 576 (748)
Q Consensus 502 ~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 576 (748)
.+... ....+.......+..+.+...++...... .+......-+......++++.+...+..|.. ....-.-=
T Consensus 274 ~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW 351 (644)
T PRK11619 274 NEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYW 351 (644)
T ss_pred CHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHH
Confidence 22222 22333333333322445555555433221 2444445555566678888888888887753 22223334
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCh---HH--HHHHHHHhhhhhCCCCChhHHHHHHHH
Q 041741 577 MIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLV---DV--GVEIFNSMQLDHGVEPILDHYTCMIDC 651 (748)
Q Consensus 577 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~---~~--A~~~~~~~~~~~~~~~~~~~~~~l~~~ 651 (748)
+..++...|+.++|...|+++.. ..+ -|..+... +.|.. .. .-.. . ......| ...-+..
T Consensus 352 ~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~~~~~~~~~~~---~-~~~~~~~----~~~ra~~ 416 (644)
T PRK11619 352 QADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQ--RLGEEYPLKIDKAPKP---D-SALTQGP----EMARVRE 416 (644)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHH--HcCCCCCCCCCCCCch---h-hhhccCh----HHHHHHH
Confidence 56676778888888888888743 222 22222211 11111 00 0000 0 0000011 1224556
Q ss_pred HHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C--CCCcchHHHhHHHhhcCChHHHH
Q 041741 652 LGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLD-P--KNSAPYSLLANIYSSLGRWDDLR 728 (748)
Q Consensus 652 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p--~~~~~~~~l~~~~~~~g~~~~A~ 728 (748)
+...|+..+|...+..+....++.....+.......|..+.+..........+ . .-|..|......+...-..+.++
T Consensus 417 L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 417 LMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHH
Confidence 66778888888877766534556666666666777888888777765543311 0 12334444444444444444444
No 388
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=65.69 E-value=44 Score=25.37 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 694 KRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 694 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
...+++.++.+|+|+.+...++..+...|++++|++.+-.+.+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666665555443
No 389
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.54 E-value=82 Score=26.49 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC---------CCcccHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCChhhHHHH
Q 041741 275 SNSLLDMYAKNGDMDSAEVIFSNLPE---------RSVVSWNVMIAGYGQKYQ-STKAIELLQRMKSCGFEPDEVTSINM 344 (748)
Q Consensus 275 ~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l 344 (748)
.|.++.-....++......+++.+.. .+..+|..++.+.....- ---+..+|+.|++.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 46666666666666666666655532 355689999999876665 55677889999988889999999999
Q ss_pred HHHHHhcC
Q 041741 345 LVACVRSG 352 (748)
Q Consensus 345 l~~~~~~~ 352 (748)
+.++.+..
T Consensus 122 i~~~l~g~ 129 (145)
T PF13762_consen 122 IKAALRGY 129 (145)
T ss_pred HHHHHcCC
Confidence 99877653
No 390
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=65.48 E-value=63 Score=30.99 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCCCCcchHHH
Q 041741 692 LAKRAAEELFRLDPKNSAPYSLL 714 (748)
Q Consensus 692 ~a~~~~~~~~~~~p~~~~~~~~l 714 (748)
.|.+.+.++++.+|.-|..+..+
T Consensus 380 ~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHHHH
Confidence 57888999999999766654444
No 391
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.23 E-value=15 Score=26.69 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=31.8
Q ss_pred CCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 041741 618 HSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEML 664 (748)
Q Consensus 618 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 664 (748)
.....++|+..|.+......-.|+ ..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888877544333333 34566777888888888877765
No 392
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=64.98 E-value=9.3 Score=34.33 Aligned_cols=60 Identities=22% Similarity=0.239 Sum_probs=44.1
Q ss_pred HHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 041741 651 CLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAP 710 (748)
Q Consensus 651 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 710 (748)
.....++.+.|.+++.+.. .+.....|-.+...-.+.|+++.|.+.+++.++++|++...
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 3456677777777777764 23356677777777788888888888888888888876543
No 393
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=63.37 E-value=2.6e+02 Score=31.46 Aligned_cols=187 Identities=10% Similarity=-0.022 Sum_probs=92.3
Q ss_pred HhCCCchHHHHHHHHHHHC----CCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHH-----HHHHH
Q 041741 481 SLNSLDIEAFMFFKQMRQN----EMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSAL-----IEMYC 551 (748)
Q Consensus 481 ~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~ 551 (748)
...|+++++.++-+..... -..+....+..+..+..-.|++++|..+.....+..-.-+...+... ...+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3466777777776666543 12223344555566666678888888777776665333333332222 23344
Q ss_pred hcCCHHHH--HHHhhhcC-----CCC-----HHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHh
Q 041741 552 KCGDIYGA--RQFFDMMH-----GKN-----TVTWNEMIHGYAQNG-YGDEAVRLYKDMIASGVKPDDIT--FVAILTAC 616 (748)
Q Consensus 552 ~~g~~~~A--~~~~~~~~-----~~~-----~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~ 616 (748)
..|+...+ ...|.... +.. ..+...+..++.+.. ...++..-++-.......|-... +..++...
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 56633322 22222222 111 223334444444421 11222222222222211222222 23667777
Q ss_pred cCCCChHHHHHHHHHhhhhhCCCC--Ch--hHHHHHHH--HHHhcCChHHHHHHHhhC
Q 041741 617 SHSGLVDVGVEIFNSMQLDHGVEP--IL--DHYTCMID--CLGRAGHFHEAEMLIDEM 668 (748)
Q Consensus 617 ~~~~~~~~A~~~~~~~~~~~~~~~--~~--~~~~~l~~--~~~~~g~~~~A~~~~~~~ 668 (748)
...|++++|...+.++. .....+ .+ ......+. .....|+.++|.....+.
T Consensus 629 ~~~Gdl~~A~~~l~~~~-~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 629 FLRGDLDKALAQLDELE-RLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhcCCHHHHHHHHHHHH-HHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 88999999998888873 333333 22 11222222 234678888888877664
No 394
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=63.33 E-value=28 Score=32.66 Aligned_cols=58 Identities=24% Similarity=0.246 Sum_probs=48.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
+=..+.+.++++.|..+.++.+.++|++|.-..-.|.+|.+.|-..-|+.-++...+.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 3345778889999999999999999999988999999999999999888888765443
No 395
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.96 E-value=64 Score=25.24 Aligned_cols=80 Identities=13% Similarity=-0.018 Sum_probs=48.7
Q ss_pred cCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041741 134 LDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMI 213 (748)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 213 (748)
...++|..+.+.+...+. ....+--.-+..+...|+|++|...=.....||...|-+|.. .+.|-.+++...+.++-
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345667777777766654 233333444556778899999955545555688888876654 46788888888777776
Q ss_pred HcC
Q 041741 214 RKA 216 (748)
Q Consensus 214 ~~g 216 (748)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 553
No 396
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.88 E-value=69 Score=24.71 Aligned_cols=85 Identities=14% Similarity=0.211 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 041741 319 STKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREMQFR 398 (748)
Q Consensus 319 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 398 (748)
.++|..+-+.+...+-. ....-..-+..+.+.|+++.|..+.+.+..||...|.+|-.. +.|..+....-+..|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45555555555543311 111222223366789999999999999888888888777654 667777777777777776
Q ss_pred CCCCCHhhH
Q 041741 399 GVKPDRTTL 407 (748)
Q Consensus 399 g~~p~~~~~ 407 (748)
| .|....|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 5 4444444
No 397
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=62.72 E-value=87 Score=27.41 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 689 NVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 689 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
-+++|...|+++...+|+|......| .+. ++|=++.-++.+++.
T Consensus 95 ~F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 95 YFEKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHh
Confidence 36788888999999999765444444 332 345566666655443
No 398
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.95 E-value=75 Score=25.16 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041741 87 SWNNLISALVRNGLEEKALSVYNKMSN 113 (748)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 113 (748)
-|..|+..|..+|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488999999999999999999999877
No 399
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.85 E-value=13 Score=21.06 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHhH
Q 041741 688 ANVRLAKRAAEELFRLDPKNSAPYSLLAN 716 (748)
Q Consensus 688 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 716 (748)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46677888888888877766666555443
No 400
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.42 E-value=2e+02 Score=29.64 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=39.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcch--HHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHh--HHHHHHHHHHhcCCh
Q 041741 96 VRNGLEEKALSVYNKMSNEGFVPTHIT--LASVFKASTALLDVEHGRRCHGLVIKIGLDKNIY--VANALLSLYAKCGWT 171 (748)
Q Consensus 96 ~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~ 171 (748)
++.|+.+ +++.+.+.|..|+... -.+.+..++..|+.+- .+.+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELD----IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 4455554 4455556677766432 2334445555666543 34444555444321 112234445566777
Q ss_pred hhHHHHHhcC
Q 041741 172 KHAVPVFEEM 181 (748)
Q Consensus 172 ~~a~~~~~~~ 181 (748)
+.+..+++.-
T Consensus 82 ~~v~~Ll~~~ 91 (413)
T PHA02875 82 KAVEELLDLG 91 (413)
T ss_pred HHHHHHHHcC
Confidence 6666666543
No 401
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=61.35 E-value=27 Score=29.24 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=45.2
Q ss_pred HHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChH
Q 041741 659 HEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWD 725 (748)
Q Consensus 659 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 725 (748)
+.|.++++-|. ...............|++.-|.++.+.++..+|+|..+....+.+|.+.|.-.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45666666664 22333344555677899999999999999999999999999999998877544
No 402
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.15 E-value=57 Score=26.35 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhh
Q 041741 387 EAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKT 433 (748)
Q Consensus 387 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 433 (748)
+..+-++.+..-.+.|++......+++|.+.+++..|..+++-+...
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45556666667778899999999999999999999999888877543
No 403
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.37 E-value=14 Score=37.37 Aligned_cols=56 Identities=9% Similarity=-0.065 Sum_probs=48.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
-+..+...++++.|...+.++++++|+.+..+...+.++.+.+++..|+.-...+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhh
Confidence 34456677899999999999999999999999999999999999999998777643
No 404
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.23 E-value=58 Score=24.36 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=19.7
Q ss_pred hcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHH
Q 041741 350 RSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEA 388 (748)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 388 (748)
..|+.+.|.+++..+. ..+..|..++.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555555555555 5555555555555555544433
No 405
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=57.88 E-value=3.6e+02 Score=31.44 Aligned_cols=48 Identities=6% Similarity=-0.184 Sum_probs=19.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcC
Q 041741 641 ILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHA 688 (748)
Q Consensus 641 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~ 688 (748)
+...-...+.++...|..+.+...+..+...+++.+-...+.++...+
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 333344445555555544333222322222344444444444444443
No 406
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.59 E-value=29 Score=36.56 Aligned_cols=84 Identities=8% Similarity=-0.014 Sum_probs=57.4
Q ss_pred HhcCChHHHHHHHhhC-C-CCCC------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCCh
Q 041741 653 GRAGHFHEAEMLIDEM-P-CKDD------PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRW 724 (748)
Q Consensus 653 ~~~g~~~~A~~~~~~~-~-~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 724 (748)
.+..++..+.++|..- . ...| ......+.-.|....+.++|.++++++-+.+|.++-.......+....|+-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 3556666666665432 2 1111 223444555566777888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHh
Q 041741 725 DDLRAVRELMSE 736 (748)
Q Consensus 725 ~~A~~~~~~~~~ 736 (748)
++|+.....++.
T Consensus 445 e~AL~~~~~~~s 456 (872)
T KOG4814|consen 445 EEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHh
Confidence 888887776654
No 407
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.44 E-value=2.2e+02 Score=28.73 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=34.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cCCCChHHHHHHHHHh
Q 041741 578 IHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTAC-SHSGLVDVGVEIFNSM 632 (748)
Q Consensus 578 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~A~~~~~~~ 632 (748)
+..+.+.|-+..|+++.+-+...+..-|+......|..| .+.++++--+++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 456667777777777777777754333454455555555 4556676666666655
No 408
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.22 E-value=93 Score=29.39 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=37.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHh----
Q 041741 477 IAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCK---- 552 (748)
Q Consensus 477 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 552 (748)
|.+++..+++.+++...-+.-+.--+......-.-|-.|.+.+.+..+.++-.......-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5666666666666655444332211111122222333344555555544444444443212222224444443332
Q ss_pred -cCCHHHHHHHh
Q 041741 553 -CGDIYGARQFF 563 (748)
Q Consensus 553 -~g~~~~A~~~~ 563 (748)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555544
No 409
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.76 E-value=3e+02 Score=30.18 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=29.6
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 648 MIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 648 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
|...+.+.|..+.-.++++-.. ++.+-.-.+|+.+|.+..+.+.+++|
T Consensus 350 Ln~LlgrKG~leklq~YWdV~~----------y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 350 LNSLLGRKGALEKLQEYWDVAT----------YFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred HHHHhhccchHHHHHHHHhHHH----------hhhhhhhccCHHHHHHHHHHHhccCC
Confidence 3344566676666666555432 33344445677777777777777777
No 410
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=56.62 E-value=18 Score=32.66 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=49.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 684 CRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 684 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
....+|.+.|.+.+.+++++-|+....+..++....+.|+.+.|.+.|++-.+-.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4567899999999999999999999999999999999999999999999866533
No 411
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.45 E-value=78 Score=23.74 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHH
Q 041741 552 KCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEA 590 (748)
Q Consensus 552 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 590 (748)
..|+.+.|.+++..+. ..+..|...+.++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577788888888777 6677777777777777765544
No 412
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=56.31 E-value=1.2e+02 Score=30.31 Aligned_cols=90 Identities=9% Similarity=0.057 Sum_probs=61.3
Q ss_pred HHHHHHhcCChHHHHHHHhhCC----CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------chHH
Q 041741 648 MIDCLGRAGHFHEAEMLIDEMP----CKD----DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA------PYSL 713 (748)
Q Consensus 648 l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~ 713 (748)
+...|...|+...-..++.... ... .....+.++..|...+.++.|.....+.. .|++.. .++.
T Consensus 175 ~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY 252 (493)
T KOG2581|consen 175 LYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYY 252 (493)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHH
Confidence 3344455566555444443321 222 24566778888999999999998888754 454333 3778
Q ss_pred HhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 714 LANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 714 l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
++.+..-++++..|.+++-.+.++.+
T Consensus 253 ~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 253 LGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 89999999999999999998766554
No 413
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.14 E-value=1e+02 Score=25.24 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 041741 676 IWEVLLSSCRLHANVRLAKRAAE 698 (748)
Q Consensus 676 ~~~~l~~~~~~~~~~~~a~~~~~ 698 (748)
.|...+..+...|++++|.++++
T Consensus 101 fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 101 FYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 33333333333333333333333
No 414
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.70 E-value=1.3e+02 Score=28.49 Aligned_cols=87 Identities=11% Similarity=0.036 Sum_probs=47.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHH-----
Q 041741 376 LSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYS----- 450 (748)
Q Consensus 376 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 450 (748)
|.+++..|+|.+++.+.-+.-+.--+..+.....-|-.|.+.+.+..+.++-...+......+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 566677777777776655544332233344445555556666766666666665555333333333444444443
Q ss_pred hcCChHHHHHHH
Q 041741 451 KCQRNELAERVF 462 (748)
Q Consensus 451 ~~~~~~~a~~~~ 462 (748)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 356666666655
No 415
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=55.61 E-value=2.5e+02 Score=28.85 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=58.2
Q ss_pred hcCChHHHHHHHhhCC-CCCCHh----HHHHHHHHHHhcC----CH---HHHHHHHHHHHhcCCCCCcchHHHhHHHhhc
Q 041741 654 RAGHFHEAEMLIDEMP-CKDDPV----IWEVLLSSCRLHA----NV---RLAKRAAEELFRLDPKNSAPYSLLANIYSSL 721 (748)
Q Consensus 654 ~~g~~~~A~~~~~~~~-~~~~~~----~~~~l~~~~~~~~----~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 721 (748)
..|+.++|+.++-.++ +.|+.. -|..++..+-.+. .. -+-....++++-.+.+|..++...+--....
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (831)
T PRK15180 710 TEGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHL 789 (831)
T ss_pred ccccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHH
Confidence 4588999999988886 677743 3455555543321 11 1224455666667888887777777777888
Q ss_pred CChHHHHHHHHHHHhc
Q 041741 722 GRWDDLRAVRELMSEN 737 (748)
Q Consensus 722 g~~~~A~~~~~~~~~~ 737 (748)
.++.+|+++|+++.+-
T Consensus 790 ~~~~~~~~~~~~~~~~ 805 (831)
T PRK15180 790 RDYTQALQYWQRLEKV 805 (831)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998773
No 416
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.46 E-value=39 Score=30.35 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=25.0
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 670 CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 670 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
..|++.++..++..+...|+.++|.+...++..+.|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456677776666666677777777777777777766
No 417
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=55.36 E-value=1.9e+02 Score=28.21 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=77.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc------CCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChH
Q 041741 586 YGDEAVRLYKDMIASGVKPDDITFVAILTACS------HSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFH 659 (748)
Q Consensus 586 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 659 (748)
-++++..++++....+ .|.+......|.++. ..-+|..-..+|+.+ ....-+|-+ +.+. .-++....-.+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL-~~~apSPvV-~LNR-AVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDAL-EQAAPSPVV-TLNR-AVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHH-HHhCCCCeE-eehH-HHHHHHhhhHH
Confidence 3578888999988887 488888887777762 234677777777777 333333322 2222 22334444466
Q ss_pred HHHHHHhhCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 041741 660 EAEMLIDEMPCKDD----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA 709 (748)
Q Consensus 660 ~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 709 (748)
.++..++.+...|. ...+..-...+.+.|..++|...|++++.+.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 77777777753332 223333455678899999999999999999885444
No 418
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=55.32 E-value=2e+02 Score=27.58 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHH-cCCCCCHhhHHHHHHHhhc-cC-ChHHHHHHHHHHHh-hcCCchhHHHHHHHHHHHhcCChHHHHH
Q 041741 385 HKEAIKLFREMQF-RGVKPDRTTLAIILSSCAA-MG-ILESGKQVHAASLK-TASHIDNYVASGLIGIYSKCQRNELAER 460 (748)
Q Consensus 385 ~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 460 (748)
..+|+.+++..-. ..+--|+.+...+++.... .+ ....--++...+.. .+..++..+...++..+++.++|..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552221 2345556666666655544 11 12222233333332 2344566666677777777777777777
Q ss_pred HHhhCCC-----CCcchHHHHHHHHHhCCCchHHHHH
Q 041741 461 VFHRIPE-----LDIVCWNSMIAGLSLNSLDIEAFMF 492 (748)
Q Consensus 461 ~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~ 492 (748)
++..... .|...|..+|......|+..-..++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 7765542 3667788888888888886544333
No 419
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.18 E-value=49 Score=29.69 Aligned_cols=51 Identities=12% Similarity=-0.045 Sum_probs=29.5
Q ss_pred CCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 619 SGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 619 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
.++.+......+.+.+.....|+...+..++.++...|+.++|....+++.
T Consensus 121 ~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 121 PPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333333333333333556777777777777777777777777666664
No 420
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=53.05 E-value=64 Score=26.35 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=22.2
Q ss_pred HHHHHHHh--cCCCCCcchHHHhHHHhhcCChHHHHHHHH
Q 041741 695 RAAEELFR--LDPKNSAPYSLLANIYSSLGRWDDLRAVRE 732 (748)
Q Consensus 695 ~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 732 (748)
++++.+.+ +.-.-+..|...+..+...|++.+|.++|+
T Consensus 84 ~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 84 ELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444433 334444556666667777777777777765
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.99 E-value=15 Score=29.87 Aligned_cols=34 Identities=26% Similarity=0.521 Sum_probs=26.6
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 041741 581 YAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTAC 616 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 616 (748)
....|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34556778899999999999998986 67776553
No 422
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.59 E-value=55 Score=21.23 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=26.1
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 041741 379 YSQSENHKEAIKLFREMQFRGVKPDRTTLAIILS 412 (748)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 412 (748)
..+.|-.+++..++++|.+.|+..++..+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3566777788888888888888888877776664
No 423
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=52.42 E-value=68 Score=25.94 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhh
Q 041741 590 AVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQ 633 (748)
Q Consensus 590 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 633 (748)
..+-++.+..-++.|++......+++|-+.+|+..|+.+|+.+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44455566666778888888888888888888888888888774
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.25 E-value=55 Score=21.20 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=29.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 041741 312 GYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLV 346 (748)
Q Consensus 312 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 346 (748)
...+.|-..++..+++.|.+.|+..+...+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34567888899999999999999998888887765
No 425
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=50.95 E-value=2.3e+02 Score=27.09 Aligned_cols=57 Identities=16% Similarity=-0.074 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041741 644 HYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEEL 700 (748)
Q Consensus 644 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 700 (748)
++......|..+|.+.+|.++.++.. .+-+...+..++..+...||--.+...+++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 35567788999999999999999986 4457788889999999999865555555543
No 426
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.89 E-value=2.2e+02 Score=26.79 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=52.3
Q ss_pred hHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 658 FHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVR-LAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 658 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
..+-++.+.++. .+.+-.+|..--......|++. +=.+..+.++..+.+|-.++.+.-+++..-+++++=+.+-.+|
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444443 3334455554444444455555 5566677777777767777777777777777777777777776
Q ss_pred HhcCCCCCCCC
Q 041741 735 SENCIVKDPAY 745 (748)
Q Consensus 735 ~~~~~~~~~~~ 745 (748)
.+..+..+.+|
T Consensus 174 le~Di~NNSAW 184 (318)
T KOG0530|consen 174 LEEDIRNNSAW 184 (318)
T ss_pred HHHhhhccchh
Confidence 66666555443
No 427
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.84 E-value=1.5e+02 Score=29.71 Aligned_cols=57 Identities=9% Similarity=0.120 Sum_probs=42.9
Q ss_pred hhhHHHHHHHccCCchhhhhhhhcCCC------CchhhhhHHHHHhhcCCChhHHHHhhccCC
Q 041741 25 LCNRLIELYSKCNNTHSAQHLFDKMPH------KDIYSWNAILSAQCKSDDLEFAYKLFDEMP 81 (748)
Q Consensus 25 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 81 (748)
.+.-|..-|..+|+++.|.+.|.+... .-...|.++|.+-.-.|+|........+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 466678889999999999999998664 334567777777777788887776666554
No 428
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.32 E-value=92 Score=25.54 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=42.1
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCcchHHHhHHHhhcCChHHHHHHHHH
Q 041741 670 CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFR--LDPKNSAPYSLLANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 670 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (748)
.+.|+..+...+....... .+.++++.+.. +.-+-+..|...|..+...|++++|.++|+.
T Consensus 62 Y~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 62 YKNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp GTT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3445555544444333333 67778887776 4556677899999999999999999999986
No 429
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=47.53 E-value=34 Score=32.34 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=34.5
Q ss_pred cCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 617 SHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 617 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
.+.|+.++|..+|+... ...|+ +..+..++......+++-+|-..|-+..
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 46788888888888764 44555 5556666666666677777777766554
No 430
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=46.98 E-value=51 Score=31.39 Aligned_cols=81 Identities=7% Similarity=-0.003 Sum_probs=58.7
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHH
Q 041741 637 GVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLL-SSCRLHANVRLAKRAAEELFRLDPKNSAPYSL 713 (748)
Q Consensus 637 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 713 (748)
.+..|+..|...+.-..+.|.+.+.-.++.+.. ++.+...|-.-. .-+...++++.+...+.+.++++|++|..+..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 455667777777766677788888888887774 444566664422 23567789999999999999999999988765
Q ss_pred HhHH
Q 041741 714 LANI 717 (748)
Q Consensus 714 l~~~ 717 (748)
..+.
T Consensus 182 yfr~ 185 (435)
T COG5191 182 YFRM 185 (435)
T ss_pred HHHH
Confidence 5443
No 431
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.80 E-value=2e+02 Score=30.38 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCC--CCHHHH---HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 041741 544 SALIEMYCKCGDIYGARQFFDMMHG--KNTVTW---NEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSH 618 (748)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 618 (748)
..++.-|.+.+++++|..++..|.= -....| +.+.+.+.+..--++....++.+...-..|....-....
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~----- 486 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATV----- 486 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHH-----
Confidence 3567789999999999999988761 122222 233333334333333344444444332222221111111
Q ss_pred CCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 041741 619 SGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAK 694 (748)
Q Consensus 619 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 694 (748)
.++-+ |-..........+.|.+++++|.-+--.+. +.+.+..+-......|+.+.|.
T Consensus 487 -------~ey~d---------~V~~~aRRfFhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 487 -------LEYRD---------PVSDLARRFFHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred -------HHHHH---------HHHHHHHHHHHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 11111 101112234455667788888877766654 4445555555555666666554
No 432
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.74 E-value=56 Score=25.02 Aligned_cols=27 Identities=30% Similarity=0.170 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041741 678 EVLLSSCRLHANVRLAKRAAEELFRLD 704 (748)
Q Consensus 678 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 704 (748)
..+.......|++++|...+++++++.
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 334455667788888888888888763
No 433
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.56 E-value=2.1e+02 Score=25.26 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=26.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 041741 308 VMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSG 352 (748)
Q Consensus 308 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 352 (748)
..+..|.++|.+++|.++|++... .|+......-+....+.+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 345678888888888888888776 345554444444444433
No 434
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.19 E-value=1.2e+02 Score=30.86 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=37.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC---------CCCcchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDP---------KNSAPYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
|++...-.||+..|.++++.. +++. -...+++.+|-+|...+++.+|.+.+..+.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455567777777776652 2222 245678888889999999999988888664
No 435
>PHA02878 ankyrin repeat protein; Provisional
Probab=46.05 E-value=3.5e+02 Score=28.62 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=45.9
Q ss_pred HHHHHHhCCCCCCcch---HHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHh--HHHHHHHHHHhcCChhhHHHHHhcC
Q 041741 107 VYNKMSNEGFVPTHIT---LASVFKASTALLDVEHGRRCHGLVIKIGLDKNIY--VANALLSLYAKCGWTKHAVPVFEEM 181 (748)
Q Consensus 107 ~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~ 181 (748)
+.+.+.+.|..++... -.+.+...+..|+.+-++ .+.+.|..++.. .-.+.+...+..|+.+-+.-+++.-
T Consensus 149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~----~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g 224 (477)
T PHA02878 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTE----LLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG 224 (477)
T ss_pred HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHH----HHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 5555566665554332 123344444555544333 333445443321 0112233444556666555555543
Q ss_pred CC---CCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc
Q 041741 182 SE---PNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDS 221 (748)
Q Consensus 182 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 221 (748)
.. .|..-.+.+..+....++ .++++.+.+.|..++.
T Consensus 225 a~in~~d~~g~TpLh~A~~~~~~----~~iv~~Ll~~gadvn~ 263 (477)
T PHA02878 225 ASTDARDKCGNTPLHISVGYCKD----YDILKLLLEHGVDVNA 263 (477)
T ss_pred CCCCCCCCCCCCHHHHHHHhcCC----HHHHHHHHHcCCCCCc
Confidence 32 222233333333322232 2344455556655543
No 436
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.00 E-value=5.8e+02 Score=29.98 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHH
Q 041741 573 TWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD----ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCM 648 (748)
Q Consensus 573 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 648 (748)
-|...++.+-..+..+.+.++-..+++. ++++. .+++.+..-....|.+.+|...+-+- ....-.......+
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---pdserrrdcLRql 1060 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---PDSERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---CcHHHHHHHHHHH
Confidence 3566777888888888888888887775 44443 35677777778888887777664322 1111113445667
Q ss_pred HHHHHhcCChHH------------HHH-HHhhCC-CCC--CHhHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCC
Q 041741 649 IDCLGRAGHFHE------------AEM-LIDEMP-CKD--DPVIWEVLLSSCRLHANVRLAK-RAAEELFRLDPK 706 (748)
Q Consensus 649 ~~~~~~~g~~~~------------A~~-~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~p~ 706 (748)
+-.+..+|.++. ... ++++.. ..| .+..|+.|...+...+++.+|- -.|+.+.++..+
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 777777776543 333 232221 111 1233444444455556665554 457777777664
No 437
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.86 E-value=5.7e+02 Score=29.88 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=9.6
Q ss_pred CCHhhHHHHHHHhhccCC
Q 041741 402 PDRTTLAIILSSCAAMGI 419 (748)
Q Consensus 402 p~~~~~~~ll~~~~~~~~ 419 (748)
+++..-...+..+...+.
T Consensus 633 ~d~~VR~~Av~~L~~~~~ 650 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP 650 (897)
T ss_pred CCHHHHHHHHHHHhhhcc
Confidence 555555555555555554
No 438
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.73 E-value=1.6e+02 Score=23.38 Aligned_cols=27 Identities=15% Similarity=0.439 Sum_probs=23.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 041741 371 SWNAMLSSYSQSENHKEAIKLFREMQF 397 (748)
Q Consensus 371 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 397 (748)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488889999999999999999998877
No 439
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.56 E-value=2.7e+02 Score=26.01 Aligned_cols=159 Identities=15% Similarity=0.100 Sum_probs=76.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhc
Q 041741 577 MIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTAC-SHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRA 655 (748)
Q Consensus 577 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 655 (748)
++..+-..|++++....++++...+...+..--+.+-.+| ...|....++.++..+.....-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 5566677788888888888888876666665555555555 2234455556555555322222222 1122222222210
Q ss_pred ------CChHHHHHHHhhCCCC----C-CHhHHHHHHHHH-H---h--cC-----CHHHHHHHHHHHHhc-----CCCCC
Q 041741 656 ------GHFHEAEMLIDEMPCK----D-DPVIWEVLLSSC-R---L--HA-----NVRLAKRAAEELFRL-----DPKNS 708 (748)
Q Consensus 656 ------g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~-~---~--~~-----~~~~a~~~~~~~~~~-----~p~~~ 708 (748)
.--.+...+++....+ + ..+.+..+-.-| + . .| -.++|.+.|+++.++ .|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1113445555554311 1 112222221111 1 1 11 236677777777773 55454
Q ss_pred cchHH----HhHHHhhcCChHHHHHHHHHHHh
Q 041741 709 APYSL----LANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 709 ~~~~~----l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
..+-. -.-.|...|+.++|.++-+..-.
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 43221 12234557899998888776544
No 440
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.55 E-value=30 Score=28.31 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=23.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 041741 96 VRNGLEEKALSVYNKMSNEGFVPTHITLASVFKA 129 (748)
Q Consensus 96 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 129 (748)
-.-|.-..|..+|++|+++|-+|| .|+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 345666789999999999998887 44555543
No 441
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=43.53 E-value=46 Score=20.29 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=22.4
Q ss_pred cchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 709 APYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.+|..||.+-...+++++|.+-|+...+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888888899988888887654
No 442
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.34 E-value=1.1e+02 Score=25.85 Aligned_cols=65 Identities=11% Similarity=0.058 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCCh
Q 041741 106 SVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWT 171 (748)
Q Consensus 106 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 171 (748)
++.+.+.+.|+++++.- ..++..+...++.-.|..+|+.+.+.+...+..|--.-++.+...|-+
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 34455666777665443 345566666666678888888888887777666655556667666643
No 443
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.19 E-value=5e+02 Score=28.70 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=11.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 041741 310 IAGYGQKYQSTKAIELLQRMKS 331 (748)
Q Consensus 310 ~~~~~~~~~~~~a~~~~~~m~~ 331 (748)
.+++....+.+.+.++++++.+
T Consensus 217 c~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 217 CQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeEEcCCHHHHHHHHHHHHh
Confidence 3444445555555555555554
No 444
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.95 E-value=2.5e+02 Score=31.45 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=90.1
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHH
Q 041741 548 EMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVE 627 (748)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 627 (748)
.....+|+++.|.+.-..+. +...|..|+....++|+.+-|...|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 44567899999998877665 556899999999999999999999988665 5555566778888887666
Q ss_pred HHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041741 628 IFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRL 703 (748)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 703 (748)
+.+.+ ..+-|... ....++. .|+.++=.++++.....| ..| .....+|.-++|.++.++.-..
T Consensus 720 m~~ia----e~r~D~~~--~~qnalY-l~dv~ervkIl~n~g~~~--lay----lta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 720 MMKIA----EIRNDATG--QFQNALY-LGDVKERVKILENGGQLP--LAY----LTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHH----HhhhhhHH--HHHHHHH-hccHHHHHHHHHhcCccc--HHH----HHHhhcCcHHHHHHHHHhhccc
Confidence 65444 33333322 1222222 588888888888876322 111 1234578888888888887663
No 445
>PHA03100 ankyrin repeat protein; Provisional
Probab=42.07 E-value=4.4e+02 Score=27.82 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=6.6
Q ss_pred HHHHHHHhCCCCCc
Q 041741 10 LHAHILRNGLFDDT 23 (748)
Q Consensus 10 ~~~~~~~~~~~~~~ 23 (748)
+...+++.|..|+.
T Consensus 50 ivk~Ll~~g~~~~~ 63 (480)
T PHA03100 50 VVKILLDNGADINS 63 (480)
T ss_pred HHHHHHHcCCCCCC
Confidence 34444555555443
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.66 E-value=53 Score=31.36 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=32.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 041741 371 SWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAI 409 (748)
Q Consensus 371 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 409 (748)
-|+..|....+.||+++|+.++++.++.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 377889999999999999999999999987765555543
No 447
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.57 E-value=1.8e+02 Score=26.91 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=53.8
Q ss_pred HHHcCChhHHHHHHHHHHHcCCC-CCHH--HHHHHHHHhcCCCChHHHHHHHHHhh--hhhCCCCChhHHHHHHHHHHhc
Q 041741 581 YAQNGYGDEAVRLYKDMIASGVK-PDDI--TFVAILTACSHSGLVDVGVEIFNSMQ--LDHGVEPILDHYTCMIDCLGRA 655 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~~~~-p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ 655 (748)
+...|+++.|+++.+.+++.|.+ |+.. ++-+++ |.++++... ...|-..++.....+...-...
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v-----------aeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~ 161 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV-----------AEEVANAALKAASAGESVEPYFLRVFLDLTTEW 161 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH-----------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcC
Confidence 45788999999999999998854 3321 121211 122222211 1224333333332222221111
Q ss_pred CChHHHHHHHhhCCCCCCHhHHHHHHHHHH---------hcCCHHHHHHHHHHHHhcCCC
Q 041741 656 GHFHEAEMLIDEMPCKDDPVIWEVLLSSCR---------LHANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 656 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~p~ 706 (748)
.|+.......+...+..+. ..++...|...++++++++|+
T Consensus 162 -----------dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 162 -----------DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred -----------CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 1221112233444444442 345778999999999999994
No 448
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.23 E-value=2.9e+02 Score=25.37 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---CHHHHH--HHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHH
Q 041741 571 TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKP---DDITFV--AILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHY 645 (748)
Q Consensus 571 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 645 (748)
..-+|.|+--|.-...+.+|.+.|.. +.|+.| +..++. .-++.....|+++.|++....+. -.-+.-|.+.+
T Consensus 26 ~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~-PeiLd~n~~l~ 102 (228)
T KOG2659|consen 26 REDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN-PEILDTNRELF 102 (228)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC-hHHHccchhHH
Confidence 33455555555555555555555544 334444 222222 33445566777777777766652 11222222222
Q ss_pred HHHH----HHHHhcCChHHHHHHHhhCC
Q 041741 646 TCMI----DCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 646 ~~l~----~~~~~~g~~~~A~~~~~~~~ 669 (748)
-.+. --+.|.|..++|+++.+.-.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 1111 12345666667766666543
No 449
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=39.94 E-value=3.8e+02 Score=26.37 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=23.8
Q ss_pred hcCChHHHHHHHhhCC------CCCCHhHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 041741 654 RAGHFHEAEMLIDEMP------CKDDPVIWE--VLLSSCRLHANVRLAKRAAEELFR 702 (748)
Q Consensus 654 ~~g~~~~A~~~~~~~~------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 702 (748)
+.++.++|+++++++. ..|++..+. ..+..+...||..++++.+..+..
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555665555552 234443332 223334455666666555555544
No 450
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=39.59 E-value=62 Score=18.86 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHh
Q 041741 689 NVRLAKRAAEELFRLDPKNSAPYSLLA 715 (748)
Q Consensus 689 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 715 (748)
++++|..+|++.+...| ++..+...+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 46788888888888887 555555443
No 451
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=39.50 E-value=66 Score=32.13 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=36.6
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHH--HHHHhcCCHHHHHHHH---HHHHhcCCCCCcchHHHhHHHh
Q 041741 647 CMIDCLGRAGHFHEAEMLIDEM-PCKDDPVIWEVLL--SSCRLHANVRLAKRAA---EELFRLDPKNSAPYSLLANIYS 719 (748)
Q Consensus 647 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~---~~~~~~~p~~~~~~~~l~~~~~ 719 (748)
.++-+|.+.++.+-|+.-.-+. ...|.. ..+.|- .+++...++.+|-+.+ ..+.-+...+.+....+.+.|+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~-frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyW 310 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSY-FRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYW 310 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHH
Confidence 4667788888888888664433 333321 112221 2234444555554433 3333344445555555666653
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.44 E-value=83 Score=29.63 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhC
Q 041741 646 TCMIDCLGRAGHFHEAEMLIDEM 668 (748)
Q Consensus 646 ~~l~~~~~~~g~~~~A~~~~~~~ 668 (748)
..+++.|.+.|++++|.++++.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 35667777777777777777765
No 453
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=39.11 E-value=3.5e+02 Score=25.72 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=35.5
Q ss_pred HHHHHHhcCChHHHHHHHhhC---C-CCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041741 648 MIDCLGRAGHFHEAEMLIDEM---P-CKD-----DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN 707 (748)
Q Consensus 648 l~~~~~~~g~~~~A~~~~~~~---~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 707 (748)
+.+.|.+.|+.+.|..++--+ . ... +......++......++++-+.+..+=+..++|++
T Consensus 185 Lf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 185 LFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 556666677777777654332 2 111 12233344555666777888877777777777754
No 454
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.04 E-value=1.9e+02 Score=22.77 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=46.1
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHHH
Q 041741 317 YQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREMQ 396 (748)
Q Consensus 317 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 396 (748)
...++|..+.+.+...+. -....-..-+..+.+.|+++.|...=.....||...|.+|-. .+.|-.+++...+..+.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356777777777776553 112222223336678888888854444444577777666544 47788888888887776
Q ss_pred HcC
Q 041741 397 FRG 399 (748)
Q Consensus 397 ~~g 399 (748)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 654
No 455
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.01 E-value=12 Score=35.95 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=53.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCCCCCCCCC
Q 041741 684 CRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCIVKDPAYS 746 (748)
Q Consensus 684 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 746 (748)
....|++++|++.+..+++++|.....|.-.+.++.+++++..|++-+....+-+...+-+|-
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~yk 186 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYK 186 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccc
Confidence 456788999999999999999999999999999999999999999988876555444444443
No 456
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=38.95 E-value=47 Score=24.78 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=36.1
Q ss_pred hhhcCCCCchhhhhHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChh
Q 041741 45 LFDKMPHKDIYSWNAILSAQCKSDDLEFAYKLFDEMPERNVVSWNNLISALVRNGLEE 102 (748)
Q Consensus 45 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (748)
++..+.+..+.+....-...+...+.+.|.++++.++.+...+|..+..++-..|...
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3334444444444444444445566777888888877777778887777777666543
No 457
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=38.89 E-value=1.5e+02 Score=21.99 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=21.0
Q ss_pred HhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc
Q 041741 166 AKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDS 221 (748)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 221 (748)
++.|+++-+..+++.-.+.+. -+..+...+..|+ .++++.+.+.|..++.
T Consensus 5 ~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~----~~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 5 AQNGNLEILKFLLEKGADINL--GNTALHYAAENGN----LEIVKLLLENGADINS 54 (89)
T ss_dssp HHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTT----HHHHHHHHHTTTCTT-
T ss_pred HHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCC----HHHHHHHHHhcccccc
Confidence 444555555555553332222 1112333334444 2444455555555544
No 458
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.54 E-value=6.6e+02 Score=28.82 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=22.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041741 305 SWNVMIAGYGQKYQSTKAIELLQRMKS 331 (748)
Q Consensus 305 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 331 (748)
-|..|+..|...|+.++|+++|.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 588888888888888999988888776
No 459
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=38.46 E-value=51 Score=31.41 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHH-HHHHHHhcCChHHHHHHHhhCC--CCCCHhHHH
Q 041741 602 VKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTC-MIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWE 678 (748)
Q Consensus 602 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 678 (748)
+.-|...|...+.--.+.|.+.+...++.+....+ +.+++.|-. -..-+...++++.+..++.+.. .+.+|..|-
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh--P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH--PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34455566666655566778888888888875443 334444432 3344566789999999988775 344677776
Q ss_pred HHHHH
Q 041741 679 VLLSS 683 (748)
Q Consensus 679 ~l~~~ 683 (748)
.....
T Consensus 181 eyfr~ 185 (435)
T COG5191 181 EYFRM 185 (435)
T ss_pred HHHHH
Confidence 66543
No 460
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.14 E-value=57 Score=31.20 Aligned_cols=40 Identities=25% Similarity=0.211 Sum_probs=33.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 041741 305 SWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINM 344 (748)
Q Consensus 305 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 344 (748)
-|+..|....+.|++++|+.++++.++.|+.--..||...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 5788999999999999999999999999987665665443
No 461
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.59 E-value=5.4e+02 Score=27.49 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=39.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cCCCChHHHHHHHHHhhh--hhCCCCChhHHHHHHHHHHh
Q 041741 578 IHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTAC-SHSGLVDVGVEIFNSMQL--DHGVEPILDHYTCMIDCLGR 654 (748)
Q Consensus 578 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 654 (748)
+..+.+.|-+..|.++.+-+......-|+.....+|..| .+..++.--+++++.... ....-|+...-.+++..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 344555666666666666666643222444455555554 344556655555554421 22234444433345555554
Q ss_pred cC
Q 041741 655 AG 656 (748)
Q Consensus 655 ~g 656 (748)
..
T Consensus 429 ~~ 430 (665)
T KOG2422|consen 429 KN 430 (665)
T ss_pred cC
Confidence 43
No 462
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=37.27 E-value=3.8e+02 Score=25.73 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=18.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHhhccCChH
Q 041741 374 AMLSSYSQSENHKEAIKLFREMQFR-GVKPDRTTLAIILSSCAAMGILE 421 (748)
Q Consensus 374 ~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~ 421 (748)
..+..++..+++....++++.-... +..-|...+..+++.....|+..
T Consensus 207 ~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 207 SILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred HHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 3334444444444444444333322 22233333444444444444433
No 463
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=36.74 E-value=4.6e+02 Score=26.42 Aligned_cols=92 Identities=10% Similarity=0.072 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC------C--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMPCKD------D--PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA------- 709 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------- 709 (748)
-..+++.+...|+.++|..++.+.+... . ......-+..|...+|+-+|.-.-++....--+++.
T Consensus 134 Tk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlk 213 (439)
T KOG1498|consen 134 TKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLK 213 (439)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHH
Confidence 3457788888999999999888875111 1 112233345677788999988888876654222222
Q ss_pred chHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 710 PYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.|..+.+.....+.+=++.++|+.+-.
T Consensus 214 yY~lmI~l~lh~~~Yl~v~~~Yraiy~ 240 (439)
T KOG1498|consen 214 YYELMIRLGLHDRAYLNVCRSYRAIYD 240 (439)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHhc
Confidence 367777777788888888888887765
No 464
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=36.33 E-value=4.4e+02 Score=26.11 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCc
Q 041741 442 ASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSS 521 (748)
Q Consensus 442 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 521 (748)
..++.+.+++.++.+.+..+-+.+.........++..++-...-.+...+.+.+..... ||......++++.+.....
T Consensus 169 LQGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 169 LQGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPAS 246 (340)
T ss_pred hhHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCch
Confidence 34566777777777666666666655555555666666555554444444443333332 7888888888888776665
Q ss_pred hhHHHHHHHHHHhCCCCchH
Q 041741 522 FQGRQVHAQIEKDGYVNDIF 541 (748)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~ 541 (748)
......+..+.......+..
T Consensus 247 ~~~~~~i~~~L~~~~~~~~e 266 (340)
T PF12069_consen 247 DLVAILIDALLQSPRLCHPE 266 (340)
T ss_pred hHHHHHHHHHhcCcccCChH
Confidence 55555455555554333333
No 465
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.98 E-value=1.1e+02 Score=34.09 Aligned_cols=70 Identities=17% Similarity=0.136 Sum_probs=34.4
Q ss_pred cCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 041741 617 SHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRA 696 (748)
Q Consensus 617 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 696 (748)
...|+++.|++...++ -+..+|..|+..-.+.|+.+-|.-.|++.. .|+.|--.|.-.|+.++-...
T Consensus 654 Le~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k------nfekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTK------NFEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred hhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhh------hhhheeEEEEEeCCHHHHHHH
Confidence 3445555555554333 233455566666666666665555555543 122233334455555554444
Q ss_pred HHH
Q 041741 697 AEE 699 (748)
Q Consensus 697 ~~~ 699 (748)
.+.
T Consensus 721 ~~i 723 (1202)
T KOG0292|consen 721 MKI 723 (1202)
T ss_pred HHH
Confidence 443
No 466
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=35.79 E-value=3.7e+02 Score=25.04 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=52.1
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCCh
Q 041741 581 YAQNGYGDEAVRLYKDMIASGVKPDDITF-VAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHF 658 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 658 (748)
|....+++.|+..|.+.+. +.|+..+| ..-+.++.+..+++.+..-..+.. .+.|+ +.....++..+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 4444566677776666665 45666443 344445555666666555444432 44555 22333455555566666
Q ss_pred HHHHHHHhhC-------CCCCCHhHHHHHHHH
Q 041741 659 HEAEMLIDEM-------PCKDDPVIWEVLLSS 683 (748)
Q Consensus 659 ~~A~~~~~~~-------~~~~~~~~~~~l~~~ 683 (748)
++|+..+++. ++++...++..|..+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 6666665554 233445555555444
No 467
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.57 E-value=4e+02 Score=25.37 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHhc
Q 041741 539 DIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDIT-FVAILTACS 617 (748)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~ 617 (748)
++.....+...|.+.|++.+|+..|-....++...+..++...... |.+.+... ....+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~----------------~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK----------------GYPSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH----------------TSS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh----------------cCCcchhHHHHHHHHHHH
Confidence 6788888899999999999999887544333333332222222222 22222221 222233445
Q ss_pred CCCChHHHHHHHHHhh
Q 041741 618 HSGLVDVGVEIFNSMQ 633 (748)
Q Consensus 618 ~~~~~~~A~~~~~~~~ 633 (748)
..++...|...++...
T Consensus 153 ~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 153 CLGNLRDANELFDTFT 168 (260)
T ss_dssp HTTBHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 5677787887776664
No 468
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.44 E-value=3.6e+02 Score=24.91 Aligned_cols=55 Identities=16% Similarity=0.371 Sum_probs=39.2
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 041741 560 RQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTAC 616 (748)
Q Consensus 560 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 616 (748)
..+|+-+.+|.+.....++..|.. +++++|.+++.++-+.|+.|... .+.+++.+
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 344555556788877777776554 57899999999999999888764 34445554
No 469
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=34.97 E-value=1.6e+02 Score=23.35 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCCCCcchHHHhHH
Q 041741 693 AKRAAEELFRLDPKNSAPYSLLANI 717 (748)
Q Consensus 693 a~~~~~~~~~~~p~~~~~~~~l~~~ 717 (748)
+.+.+.++..+.|..+..+..|++-
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHH
Confidence 5667777777888654444444433
No 470
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=34.32 E-value=4.3e+02 Score=25.47 Aligned_cols=81 Identities=11% Similarity=0.009 Sum_probs=39.6
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhh----cCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHh----c
Q 041741 482 LNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSC----AKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCK----C 553 (748)
Q Consensus 482 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 553 (748)
..+++..+...+......+.. .....+...+ ....+...|..++......|..+ ....|..+|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcc
Confidence 345556666666666654322 2222222222 23344566667776555555322 22234444443 2
Q ss_pred CCHHHHHHHhhhcCC
Q 041741 554 GDIYGARQFFDMMHG 568 (748)
Q Consensus 554 g~~~~A~~~~~~~~~ 568 (748)
.+..+|...|+...+
T Consensus 127 ~d~~~A~~~~~~Aa~ 141 (292)
T COG0790 127 LDLVKALKYYEKAAK 141 (292)
T ss_pred cCHHHHHHHHHHHHH
Confidence 366677777766553
No 471
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.09 E-value=5.5e+02 Score=26.56 Aligned_cols=104 Identities=12% Similarity=0.024 Sum_probs=55.2
Q ss_pred CCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHH
Q 041741 401 KPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGL 480 (748)
Q Consensus 401 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 480 (748)
..+......++..+ .|+...+..+++.+...+...+......++... ......+...+..+++++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~-------------~~~~d~~~~~~~~~isa~ 237 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKR-------------AARYDKDGDEHYDLISAL 237 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhh-------------hhccCCCccHHHHHHHHH
Confidence 45555555555443 677777777766654432222222211111100 000111223344455555
Q ss_pred Hh---CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCC
Q 041741 481 SL---NSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLS 519 (748)
Q Consensus 481 ~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 519 (748)
.+ .++++.|+.++..|...|..|....-..++.++...|
T Consensus 238 ~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 238 HKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 54 4788999999999999988887655555555544333
No 472
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.87 E-value=4.7e+02 Score=25.38 Aligned_cols=78 Identities=10% Similarity=0.119 Sum_probs=46.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHh----------cCCHHHH
Q 041741 490 FMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCK----------CGDIYGA 559 (748)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A 559 (748)
.++++.|...++.|.-..+.-+.-.+.+.=.+..+..+++.+...... +..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 457777777888888777766666666666677777777777654322 3333333332 3555555
Q ss_pred HHHhhhcCCCCHH
Q 041741 560 RQFFDMMHGKNTV 572 (748)
Q Consensus 560 ~~~~~~~~~~~~~ 572 (748)
.++++.-..-|+.
T Consensus 338 mkLLQ~yp~tdi~ 350 (370)
T KOG4567|consen 338 MKLLQNYPTTDIS 350 (370)
T ss_pred HHHHhcCCCCCHH
Confidence 5555554444433
No 473
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.34 E-value=6.3e+02 Score=26.74 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=51.1
Q ss_pred CCCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHhc---CCC----CCcchHHHhHHHhhcCC-hHHHHHHHHHHHhcC
Q 041741 671 KDDPVIWEVLLSS--CRLHANVRLAKRAAEELFRL---DPK----NSAPYSLLANIYSSLGR-WDDLRAVRELMSENC 738 (748)
Q Consensus 671 ~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~---~p~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 738 (748)
.+|...+..++.+ ++..|+.+.|...++...+. ... -|.+++.|+-+|+..|- ..++..++.++++.+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 4455555555544 56789999999999887743 111 35689999999999988 999999999887643
No 474
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.92 E-value=5.1e+02 Score=25.51 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHH
Q 041741 574 WNEMIHGYAQNGYGDEAVRLYKDMIASGV-KPDD--ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMI 649 (748)
Q Consensus 574 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~ 649 (748)
|.-=++-|.+.+++..|...|.+-++..+ .||. +.|+.-..+-...|++..|+.=....+ .++|+ ...|-.-+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al---~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL---KLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---hcCcchhhhhhhhh
Confidence 33445667778888888888887766542 2332 455555555556677777776655553 55665 44555566
Q ss_pred HHHHhcCChHHHHHHHhhCC
Q 041741 650 DCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~~~ 669 (748)
.++....++++|..++++..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 77777788888888877763
No 475
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.23 E-value=1.8e+02 Score=24.60 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhcccc
Q 041741 87 SWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALL 134 (748)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 134 (748)
.-..++..+.+.+++..|.++++++.+.+...+..|-...+..+...|
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 345678888888888999999999999887777666555555554444
No 476
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.85 E-value=1.8e+02 Score=25.33 Aligned_cols=39 Identities=8% Similarity=-0.013 Sum_probs=20.3
Q ss_pred cCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChh
Q 041741 134 LDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTK 172 (748)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 172 (748)
.+.-.|.++++.+.+.+...+..|-..-++.+...|-+.
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344455555555555555445444444455555555443
No 477
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=30.00 E-value=4.9e+02 Score=24.75 Aligned_cols=88 Identities=17% Similarity=0.006 Sum_probs=42.1
Q ss_pred HHHccCCHHHHHHH----HHHHHHcCCCCCHhhHHHHHHHhhccCChH-HHHHHHHHHH---hhcC--CchhHHHHHHHH
Q 041741 378 SYSQSENHKEAIKL----FREMQFRGVKPDRTTLAIILSSCAAMGILE-SGKQVHAASL---KTAS--HIDNYVASGLIG 447 (748)
Q Consensus 378 ~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~---~~~~--~~~~~~~~~l~~ 447 (748)
.+.+.|+...|-++ ++-+.+.+.+++......++..+...+.-+ .-..+...++ +.+. .-++.....+..
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 34555555444433 344444566666666555555544332211 1222222222 2222 236777788888
Q ss_pred HHHhcCChHHHHHHHhhC
Q 041741 448 IYSKCQRNELAERVFHRI 465 (748)
Q Consensus 448 ~~~~~~~~~~a~~~~~~~ 465 (748)
.|.+.+++.+|+..|-.-
T Consensus 99 ~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS
T ss_pred HHHhhccHHHHHHHHHhc
Confidence 888888888888766443
No 478
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.93 E-value=1.3e+02 Score=28.34 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=10.5
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 041741 577 MIHGYAQNGYGDEAVRLYKDM 597 (748)
Q Consensus 577 l~~~~~~~~~~~~a~~~~~~m 597 (748)
+...|...|++++|+++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344445555555555555444
No 479
>PRK12798 chemotaxis protein; Reviewed
Probab=29.65 E-value=6.3e+02 Score=25.86 Aligned_cols=182 Identities=13% Similarity=0.079 Sum_probs=117.1
Q ss_pred HHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHH--HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cCCCChHHH
Q 041741 549 MYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGY--AQNGYGDEAVRLYKDMIASGVKPDDITFVAILTAC-SHSGLVDVG 625 (748)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~A 625 (748)
.....|+++-...++..-..++.. ..++.+. .-.|+..++.+.|..+...-.++....+..|+.+- ....+..+|
T Consensus 90 y~lSGGnP~vlr~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~A 167 (421)
T PRK12798 90 YLLSGGNPATLRKLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATA 167 (421)
T ss_pred hHhcCCCHHHHHHHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHH
Confidence 344567777777777665544332 2233332 23788999999999888776677777777777765 556789999
Q ss_pred HHHHHHhhhhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHH----hhCCCCCCH-hHHHHHHHHHHhcCCHHHHHHH
Q 041741 626 VEIFNSMQLDHGVEPI----LDHYTCMIDCLGRAGHFHEAEMLI----DEMPCKDDP-VIWEVLLSSCRLHANVRLAKRA 696 (748)
Q Consensus 626 ~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~ 696 (748)
+.+|+..+ -.-|. ...+..-+......|+.+++..+- ++....|-. .++..+.....+..+-..-..
T Consensus 168 l~~lD~aR---LlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~- 243 (421)
T PRK12798 168 LKLLDQAR---LLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR- 243 (421)
T ss_pred HHHHHHHH---HhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-
Confidence 99999884 22343 223444556677889999877554 444444433 344444455555554333333
Q ss_pred HHHHHh-cCCC-CCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 697 AEELFR-LDPK-NSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 697 ~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
+..++. ++|+ ....|..++..-.-.|+.+-|.-.-++.+.
T Consensus 244 l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~ 285 (421)
T PRK12798 244 LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALK 285 (421)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 444444 4664 346788899999999999988887777665
No 480
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=29.63 E-value=2.4e+02 Score=22.82 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=0.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCCc----chHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 673 DPVIWEVLLSSCRLHANVRLAKRAAEELFR-------LDPKNSA----PYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 673 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
|...+-.|..++...|++++++...++++. ++.+... +....+.++...|+.++|...|+..-+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
No 481
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.29 E-value=4.5e+02 Score=24.09 Aligned_cols=90 Identities=14% Similarity=0.021 Sum_probs=47.8
Q ss_pred hcCCCChHHHHHHHHHhhhh---hCCCCC--hhHHHHHHHHHHhcCChHH-------HHHHHhhCC----C---CCCH-h
Q 041741 616 CSHSGLVDVGVEIFNSMQLD---HGVEPI--LDHYTCMIDCLGRAGHFHE-------AEMLIDEMP----C---KDDP-V 675 (748)
Q Consensus 616 ~~~~~~~~~A~~~~~~~~~~---~~~~~~--~~~~~~l~~~~~~~g~~~~-------A~~~~~~~~----~---~~~~-~ 675 (748)
+.....+++|++.+.-+... .+.+|. ...+..++..|...|+.+. |.+.|.+.- . .-+. .
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 33444555555544433211 122333 3344556667776776443 344433331 1 1122 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 676 IWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 676 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
+...++...++.|+.++|.+.+.+++...-
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 333344567889999999999999887544
No 482
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=28.97 E-value=4.2e+02 Score=23.64 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred HhCCCCCcchhhHHHHHHHccCCchhhhhhhhcCCC------------CchhhhhHHHHHhhcCCChhHHHHhhccCCC-
Q 041741 16 RNGLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMPH------------KDIYSWNAILSAQCKSDDLEFAYKLFDEMPE- 82 (748)
Q Consensus 16 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 82 (748)
..|+.+++.+++-++..+.+..-...=...+-.+.. -|......-+..|-+.|||.+.-.+|-....
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred ------------------------CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHH
Q 041741 83 ------------------------RNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEH 138 (748)
Q Consensus 83 ------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 138 (748)
...+.|..+..+-++.-..+++-+.+---.. .+++-.|-+..++..
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiG----------iS~m~~Yhk~~qW~K 150 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIG----------ISLMYSYHKTLQWSK 150 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHH----------HHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHH--------------CCCCcHhHHHHHHHHHHhcCChhhHHHHHhc
Q 041741 139 GRRCHGLVIKI--------------GLDKNIYVANALLSLYAKCGWTKHAVPVFEE 180 (748)
Q Consensus 139 a~~~~~~~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 180 (748)
++++++.|.+. +..+.-.+-|.....+.+.|..|.|..++++
T Consensus 151 GrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 151 GRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 483
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.35 E-value=2.7e+02 Score=23.57 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=35.6
Q ss_pred HHHhCCCCCCcchHHHHHHHhccc-cCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCCh
Q 041741 110 KMSNEGFVPTHITLASVFKASTAL-LDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWT 171 (748)
Q Consensus 110 ~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 171 (748)
.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|-...++.+...|-.
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455655544332 333334332 34667778888887777666666655566667776654
No 484
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=28.24 E-value=3.3e+02 Score=22.27 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDD-PVIWEVLLSSCRLHANVRLAKRAAEEL 700 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 700 (748)
..+..+++.++.-.|..++|.++++...=.+. ...-..++..|....+.++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44556677777777888888887777763332 333345666677766666655554443
No 485
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=28.23 E-value=1.1e+02 Score=22.30 Aligned_cols=18 Identities=22% Similarity=0.075 Sum_probs=15.0
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 041741 686 LHANVRLAKRAAEELFRL 703 (748)
Q Consensus 686 ~~~~~~~a~~~~~~~~~~ 703 (748)
..|++++|..+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 468899999999988884
No 486
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.07 E-value=90 Score=21.61 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=19.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 041741 374 AMLSSYSQSENHKEAIKLFREMQFR 398 (748)
Q Consensus 374 ~ll~~~~~~~~~~~a~~~~~~m~~~ 398 (748)
.+|.++...|++++|.++++++.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4678888899999999888887653
No 487
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.03 E-value=2.8e+02 Score=28.35 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHhcCCC-----------CCeehHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041741 156 YVANALLSLYAKCGWTKHAVPVFEEMSE-----------PNEVTFTAMMSGLAKTDRVVEALEMFRLMIR 214 (748)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 214 (748)
++...|++.++-.|++..|+++++.+.- -.+.+|..+.-+|.-.+++.+|.++|...+-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999887651 3566788888899999999999999988753
No 488
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.95 E-value=8.2e+02 Score=26.67 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhccCCC
Q 041741 273 HLSNSLLDMYAKNGDMDSAEVIFSNLPE 300 (748)
Q Consensus 273 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 300 (748)
..|-..+..+.-.|.++.|..++.....
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~~s~ 176 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRLHSS 176 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-TTTT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhccc
Confidence 3444578888889999999999965543
No 489
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.87 E-value=1.6e+02 Score=25.96 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=11.6
Q ss_pred HHHHHhcCChHHHHHHHhhCC
Q 041741 649 IDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 649 ~~~~~~~g~~~~A~~~~~~~~ 669 (748)
+-.|.+.|.+++|.+++++.-
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHh
Confidence 334555566666666655554
No 490
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.79 E-value=8.2e+02 Score=26.65 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=24.2
Q ss_pred HHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHH
Q 041741 359 EMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASL 431 (748)
Q Consensus 359 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 431 (748)
.++...+-.+...-..++..|.+.|-.+.+.++.+.+-.+- ....-|...+.-+.+.|+......+...+.
T Consensus 395 ~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 395 ELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred HHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344433344444455555666666666666665554431 112334444445555555555444444333
No 491
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.01 E-value=4.2e+02 Score=24.38 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=60.2
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHhhhcC---C--CCHHHHH--HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 041741 536 YVNDIFVGSALIEMYCKCGDIYGARQFFDMMH---G--KNTVTWN--EMIHGYAQNGYGDEAVRLYKDMIASGVKPDDIT 608 (748)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~--~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 608 (748)
+.+...-++.|+.-|.-...+.+|.+.|..-. . .+..+++ .-|......|+.+.|++....+...-+.-|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 34555556666666666666666776665433 2 2444443 456777899999999999988765544455433
Q ss_pred HHHHHH----HhcCCCChHHHHHHHHHh
Q 041741 609 FVAILT----ACSHSGLVDVGVEIFNSM 632 (748)
Q Consensus 609 ~~~l~~----~~~~~~~~~~A~~~~~~~ 632 (748)
+-.+.. -..+.|..++|+++.+.-
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333322 125677788888876643
No 492
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.97 E-value=6.8e+02 Score=25.44 Aligned_cols=90 Identities=10% Similarity=0.014 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhhcCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---------CCCCC
Q 041741 541 FVGSALIEMYCKCGDIYGARQFFDMMHG------KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIAS---------GVKPD 605 (748)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------~~~p~ 605 (748)
..+..+..-|..+|+++.|.+.|.+... .-+..|-.+|..-.-.|+|.....+-.+.... -+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3455677778888888888888887543 23445556666666677777777666665553 12233
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHh
Q 041741 606 DITFVAILTACSHSGLVDVGVEIFNSM 632 (748)
Q Consensus 606 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 632 (748)
..++..+...+ .+++..|...|-..
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhC
Confidence 33444443333 33666666555443
No 493
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.56 E-value=2e+02 Score=22.23 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcC-CCCCcchHHHhHHHhhcCChHHHHHHHHH
Q 041741 689 NVRLAKRAAEELFRLD-PKNSAPYSLLANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 689 ~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (748)
+.+.-++.+++.-..+ |--|..+..|+-+|...|+.+.|.+-|+.
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
No 494
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=26.53 E-value=1e+03 Score=27.44 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC
Q 041741 343 NMLVACVRSGDIKTGREMFDSMPS 366 (748)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~ 366 (748)
..+...+..|+.+-+..+++.-..
T Consensus 624 ~~L~~Aa~~g~~~~v~~Ll~~Gad 647 (823)
T PLN03192 624 DLLCTAAKRNDLTAMKELLKQGLN 647 (823)
T ss_pred hHHHHHHHhCCHHHHHHHHHCCCC
Confidence 345555666776666666655443
No 495
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.35 E-value=1e+02 Score=21.62 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 041741 569 KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSH 618 (748)
Q Consensus 569 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 618 (748)
|....++.++...+...-.++++..+.++.+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445566666666666667777777777777763 455555544444443
No 496
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=25.95 E-value=5.4e+02 Score=24.97 Aligned_cols=43 Identities=5% Similarity=0.097 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHH
Q 041741 106 SVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIK 148 (748)
Q Consensus 106 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 148 (748)
++++.|.+.++.|.-.+|..+.-.+.+.=.+..+..+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4556666666666666666666666666666666666666544
No 497
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=25.85 E-value=92 Score=23.65 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=24.1
Q ss_pred HhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcC
Q 041741 63 AQCKSDDLEFAYKLFDEMPERNVVSWNNLISALVRNG 99 (748)
Q Consensus 63 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (748)
......+.+.+.++++.++...+.+|..+..++-..+
T Consensus 43 I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 43 IMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred HHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 3334455677777777777777777777777775543
No 498
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=25.84 E-value=3.4e+02 Score=29.26 Aligned_cols=47 Identities=13% Similarity=-0.031 Sum_probs=25.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHH
Q 041741 684 CRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRE 732 (748)
Q Consensus 684 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 732 (748)
+...|..|+|..+|+.++..+|+ ..+...++-+.+.|-..+|..+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 52 LHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 33445555556666665555554 445555555555555555555554
No 499
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=25.49 E-value=6.7e+02 Score=24.81 Aligned_cols=115 Identities=10% Similarity=0.040 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHh---cCCHHHHHHHH
Q 041741 623 DVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRL---HANVRLAKRAA 697 (748)
Q Consensus 623 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 697 (748)
+.-+.+++++.+. .+.+......+++.+.+..+.++..+.++++. .+.++..|..++..... .-.+......|
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 4455666666433 22334455566677777777777777777765 33467777777776544 22466666666
Q ss_pred HHHHhcCC-----------CCCc-------chHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 698 EELFRLDP-----------KNSA-------PYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 698 ~~~~~~~p-----------~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
.++++.-+ +-+. ++..+.......|-.+.|...++-+.+-+.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 66666310 0111 244555556788999999999998887544
No 500
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=25.24 E-value=1.1e+03 Score=27.45 Aligned_cols=316 Identities=12% Similarity=0.053 Sum_probs=149.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHH-------HHHHHhhccCChHHHHHHHHHHHhhcCCc-hhHHHHHHH
Q 041741 375 MLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLA-------IILSSCAAMGILESGKQVHAASLKTASHI-DNYVASGLI 446 (748)
Q Consensus 375 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 446 (748)
+=+++.....++.|+..++++..+ .+-....|. +++.-....|+.....+.+.+.......+ -+.-|..-.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHH
Confidence 336777788888888888888765 211122222 23333444455443333333333322222 233344555
Q ss_pred HHHHhcCChHHHHHHHhhCCC-----CC--------------------cchHHHHHHHHH---hCCCchHHHHHHHHHHH
Q 041741 447 GIYSKCQRNELAERVFHRIPE-----LD--------------------IVCWNSMIAGLS---LNSLDIEAFMFFKQMRQ 498 (748)
Q Consensus 447 ~~~~~~~~~~~a~~~~~~~~~-----~~--------------------~~~~~~li~~~~---~~~~~~~a~~~~~~m~~ 498 (748)
-+|.+.|++++-.+.+.-..+ |- ..++.-++-+.- +.-...+-..+|+.+..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYH 639 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHh
Confidence 667888888777766644331 10 011111111111 11122333445555543
Q ss_pred CC-------CCCCHHHH-----HHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhc
Q 041741 499 NE-------MYPTQFSF-----ATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMM 566 (748)
Q Consensus 499 ~~-------~~p~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (748)
+- +.+.+.++ ..++. .-.|...--.++++.... .++......+..+.+..|+++-+.+..+.+
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (932)
T PRK13184 640 KQQATLFCQLDKTPLQFRSSKMELFLS--FWSGFTPFLPELFQRAWD---LRDYRALADIFYVACDLGNWEFFSQFSDIL 714 (932)
T ss_pred hccCCceeeccCchhhhhhhhHHHHHH--HHhcCchhhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 31 11222221 11111 112333333344444433 234455666666778889988887776655
Q ss_pred CC-------C-CH--------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhcCCCChHHHHHH
Q 041741 567 HG-------K-NT--------VTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDI--TFVAILTACSHSGLVDVGVEI 628 (748)
Q Consensus 567 ~~-------~-~~--------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~ 628 (748)
.+ | ++ ..|-.-+.++....+++++.+.+.. ++|... .+..+..-+...++.+.-..+
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (932)
T PRK13184 715 AEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN-----TDPTLILYAFDLFAIQALLDEEGESIIQL 789 (932)
T ss_pred HHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh-----CCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 42 1 11 1122223444444455555543332 344433 233333333344455544455
Q ss_pred HHHhhhhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHhhCCC---CCCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHh
Q 041741 629 FNSMQLDHGVEPIL--DHYTCMIDCLGRAGHFHEAEMLIDEMPC---KDDPVIWEVLLSS-CRLHANVRLAKRAAEELFR 702 (748)
Q Consensus 629 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~ 702 (748)
.+.+ .++...... ......+.+|.=..++++|-+++..... ..+......|-.. +...++-+.|...+....+
T Consensus 790 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 790 LQLI-YDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHHH-HhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 4444 232222221 1223456777788999999999977651 1122222222222 3445677788888887774
Done!