Query 041741
Match_columns 748
No_of_seqs 562 out of 3451
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 17:25:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.2E-38 2.8E-42 341.4 36.0 500 64-720 63-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.9E-36 1.7E-40 327.4 39.8 499 165-739 63-581 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-24 4.1E-29 223.1 40.0 373 310-723 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 99.9 2.7E-24 9.4E-29 220.4 37.8 353 376-737 6-368 (388)
5 4g26_A Pentatricopeptide repea 99.9 5.1E-25 1.7E-29 228.2 25.0 182 472-654 28-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 9.9E-26 3.4E-30 233.6 14.9 179 56-234 28-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.6E-22 5.6E-27 216.1 29.7 427 305-739 8-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 4.5E-22 1.5E-26 212.6 27.8 438 273-715 7-490 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 7E-21 2.4E-25 199.5 32.7 343 368-740 25-413 (450)
10 1xi4_A Clathrin heavy chain; a 99.9 4.3E-18 1.5E-22 186.0 50.8 668 16-732 507-1340(1630)
11 3fp2_A TPR repeat-containing p 99.9 1.4E-20 4.9E-25 202.2 30.8 425 272-708 25-496 (537)
12 3fp2_A TPR repeat-containing p 99.9 1.1E-19 3.9E-24 195.1 35.5 428 155-669 25-489 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 5.3E-17 1.8E-21 177.6 55.5 667 6-730 591-1377(1630)
14 2y4t_A DNAJ homolog subfamily 99.9 4.3E-19 1.5E-23 185.8 32.8 363 302-727 25-444 (450)
15 3ieg_A DNAJ homolog subfamily 99.8 6.1E-18 2.1E-22 171.2 31.2 322 369-720 3-352 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 1.1E-17 3.6E-22 169.4 28.1 305 404-738 3-336 (359)
17 3hym_B Cell division cycle pro 99.8 3E-17 1E-21 163.8 28.0 250 473-725 59-322 (330)
18 2xm6_A Protein corresponding t 99.8 1.7E-15 5.7E-20 159.8 38.9 383 302-733 38-467 (490)
19 3hym_B Cell division cycle pro 99.8 6.3E-17 2.1E-21 161.5 26.3 263 468-736 20-298 (330)
20 1b89_A Protein (clathrin heavy 99.8 9.6E-17 3.3E-21 157.5 25.1 346 34-465 14-369 (449)
21 2xm6_A Protein corresponding t 99.7 1E-14 3.6E-19 153.6 38.7 352 367-739 37-434 (490)
22 1fch_A Peroxisomal targeting s 99.7 9.2E-17 3.2E-21 163.1 21.6 282 449-734 35-356 (368)
23 3mkr_A Coatomer subunit epsilo 99.7 6.3E-16 2.2E-20 149.5 26.3 266 452-731 12-288 (291)
24 1b89_A Protein (clathrin heavy 99.7 2.8E-16 9.6E-21 154.3 22.4 285 350-667 15-307 (449)
25 2ooe_A Cleavage stimulation fa 99.7 1.5E-14 5.3E-19 154.0 37.0 410 302-737 12-492 (530)
26 3mkr_A Coatomer subunit epsilo 99.7 2.1E-16 7.1E-21 152.9 18.5 248 477-739 6-266 (291)
27 4g1t_A Interferon-induced prot 99.7 2.5E-15 8.5E-20 158.2 28.2 216 518-747 226-469 (472)
28 4eqf_A PEX5-related protein; a 99.7 2.9E-16 9.8E-21 159.1 18.9 260 469-733 64-352 (365)
29 1fch_A Peroxisomal targeting s 99.7 2.1E-16 7.2E-21 160.4 17.3 275 453-737 15-314 (368)
30 4eqf_A PEX5-related protein; a 99.7 4.2E-16 1.4E-20 157.9 18.9 231 504-737 64-310 (365)
31 3cv0_A Peroxisome targeting si 99.7 1.1E-15 3.7E-20 152.3 20.0 260 470-734 21-312 (327)
32 2ooe_A Cleavage stimulation fa 99.7 1.9E-13 6.6E-18 145.5 36.2 406 269-706 10-495 (530)
33 2pl2_A Hypothetical conserved 99.7 1.8E-15 6.2E-20 139.7 16.6 194 537-735 2-212 (217)
34 4g1t_A Interferon-induced prot 99.6 8.5E-14 2.9E-18 146.5 28.0 379 305-715 53-471 (472)
35 3uq3_A Heat shock protein STI1 99.6 1.8E-14 6.2E-19 137.8 19.5 217 507-737 7-236 (258)
36 3spa_A Mtrpol, DNA-directed RN 99.6 3.9E-16 1.3E-20 165.6 6.4 158 55-212 128-307 (1134)
37 3cv0_A Peroxisome targeting si 99.6 1.6E-13 5.5E-18 136.5 24.8 264 368-668 20-312 (327)
38 3e4b_A ALGK; tetratricopeptide 99.6 2.7E-13 9.4E-18 140.2 26.0 376 309-736 9-420 (452)
39 3uq3_A Heat shock protein STI1 99.6 5.8E-14 2E-18 134.2 16.0 234 472-717 7-256 (258)
40 2ho1_A Type 4 fimbrial biogene 99.5 2.7E-13 9.4E-18 129.0 19.6 197 540-738 37-239 (252)
41 2vq2_A PILW, putative fimbrial 99.5 5.2E-13 1.8E-17 124.5 20.9 198 539-738 7-212 (225)
42 1ouv_A Conserved hypothetical 99.5 1.2E-12 4E-17 126.2 23.8 223 469-737 5-251 (273)
43 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.9E-13 6.6E-18 132.0 18.2 241 482-731 17-269 (275)
44 3u4t_A TPR repeat-containing p 99.5 2E-13 6.8E-18 131.7 17.7 244 475-723 8-270 (272)
45 3e4b_A ALGK; tetratricopeptide 99.5 4.8E-13 1.6E-17 138.4 20.5 344 374-739 8-389 (452)
46 3spa_A Mtrpol, DNA-directed RN 99.5 1.4E-14 4.7E-19 154.0 8.4 115 540-655 127-249 (1134)
47 2q7f_A YRRB protein; TPR, prot 99.5 2.7E-13 9.4E-18 128.2 16.1 209 506-718 24-237 (243)
48 3vtx_A MAMA; tetratricopeptide 99.5 5.3E-13 1.8E-17 119.9 17.0 166 570-738 4-171 (184)
49 2q7f_A YRRB protein; TPR, prot 99.5 4.8E-13 1.7E-17 126.5 17.5 199 538-739 21-224 (243)
50 3u4t_A TPR repeat-containing p 99.5 8.9E-13 3E-17 127.1 19.5 228 507-739 5-252 (272)
51 2h6f_A Protein farnesyltransfe 99.5 7.5E-13 2.6E-17 132.2 18.7 221 508-734 100-344 (382)
52 1ouv_A Conserved hypothetical 99.5 9.5E-12 3.2E-16 119.8 24.9 226 438-707 5-255 (273)
53 2h6f_A Protein farnesyltransfe 99.5 2.1E-12 7.2E-17 129.0 20.3 244 472-721 99-366 (382)
54 4a1s_A PINS, partner of inscut 99.5 3.9E-13 1.3E-17 138.5 14.3 261 475-736 53-371 (411)
55 2ho1_A Type 4 fimbrial biogene 99.5 6E-12 2E-16 119.6 21.4 205 507-714 39-249 (252)
56 2pl2_A Hypothetical conserved 99.5 1.6E-12 5.3E-17 119.9 16.6 195 469-700 4-211 (217)
57 3sf4_A G-protein-signaling mod 99.5 8.2E-13 2.8E-17 135.9 16.1 288 440-727 10-366 (406)
58 3ro2_A PINS homolog, G-protein 99.4 1.3E-12 4.5E-17 130.4 16.1 262 475-737 10-332 (338)
59 2vq2_A PILW, putative fimbrial 99.4 5.7E-12 1.9E-16 117.4 19.4 206 506-714 9-222 (225)
60 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.1E-12 3.6E-17 126.8 14.7 219 515-738 15-245 (275)
61 4abn_A Tetratricopeptide repea 99.4 6E-13 2E-17 138.6 13.4 191 539-734 101-318 (474)
62 4gyw_A UDP-N-acetylglucosamine 99.4 5E-12 1.7E-16 136.7 16.2 163 570-736 8-173 (723)
63 3sf4_A G-protein-signaling mod 99.4 5.8E-12 2E-16 129.5 16.1 293 371-691 11-364 (406)
64 3vtx_A MAMA; tetratricopeptide 99.4 1E-11 3.5E-16 111.4 15.4 167 539-708 4-175 (184)
65 3nf1_A KLC 1, kinesin light ch 99.3 2.2E-12 7.4E-17 127.2 8.9 196 541-736 70-306 (311)
66 4i17_A Hypothetical protein; T 99.3 2.7E-11 9.2E-16 112.9 15.7 165 572-739 8-211 (228)
67 3as5_A MAMA; tetratricopeptide 99.3 2E-11 6.9E-16 109.6 14.2 158 577-737 14-173 (186)
68 3ulq_A Response regulator aspa 99.3 9.9E-11 3.4E-15 118.9 20.7 234 476-736 109-367 (383)
69 4a1s_A PINS, partner of inscut 99.3 1.2E-11 4.2E-16 127.2 13.9 270 409-705 53-374 (411)
70 4abn_A Tetratricopeptide repea 99.3 2.4E-11 8.3E-16 126.5 14.9 180 555-738 83-288 (474)
71 3ulq_A Response regulator aspa 99.3 8E-11 2.7E-15 119.6 18.4 189 546-734 109-332 (383)
72 4i17_A Hypothetical protein; T 99.3 8E-11 2.7E-15 109.7 16.5 206 503-719 5-225 (228)
73 2ond_A Cleavage stimulation fa 99.3 2.4E-10 8.3E-15 111.8 20.3 220 487-710 33-277 (308)
74 4e6h_A MRNA 3'-END-processing 99.3 3.4E-08 1.2E-12 105.4 37.3 414 269-709 63-576 (679)
75 3ro2_A PINS homolog, G-protein 99.3 2.9E-10 9.8E-15 113.2 19.9 151 556-706 159-335 (338)
76 1hz4_A MALT regulatory protein 99.3 1.9E-09 6.4E-14 109.1 26.2 192 544-735 97-320 (373)
77 2ond_A Cleavage stimulation fa 99.2 1.8E-09 6.2E-14 105.6 24.9 213 522-739 33-272 (308)
78 3as5_A MAMA; tetratricopeptide 99.2 5E-10 1.7E-14 100.3 18.9 170 540-712 8-182 (186)
79 4e6h_A MRNA 3'-END-processing 99.2 9.9E-09 3.4E-13 109.6 30.9 418 302-740 65-573 (679)
80 3nf1_A KLC 1, kinesin light ch 99.2 3.5E-11 1.2E-15 118.4 11.0 235 472-706 29-310 (311)
81 3q15_A PSP28, response regulat 99.2 2.8E-09 9.5E-14 107.9 23.5 162 573-735 184-363 (378)
82 3q15_A PSP28, response regulat 99.2 3.3E-10 1.1E-14 114.7 16.1 304 401-705 7-367 (378)
83 3qky_A Outer membrane assembly 99.1 1.4E-09 4.9E-14 103.5 17.2 184 539-739 14-226 (261)
84 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.6E-09 8.9E-14 98.9 18.0 183 540-742 4-218 (225)
85 3edt_B KLC 2, kinesin light ch 99.1 8.7E-10 3E-14 106.6 13.7 221 516-736 12-280 (283)
86 4gyw_A UDP-N-acetylglucosamine 99.1 8.9E-10 3.1E-14 119.2 14.3 164 539-706 8-177 (723)
87 3mv2_B Coatomer subunit epsilo 99.1 6.5E-09 2.2E-13 97.9 18.2 243 449-713 23-292 (310)
88 3qky_A Outer membrane assembly 99.1 3E-09 1E-13 101.4 16.3 206 502-728 12-252 (261)
89 4ga2_A E3 SUMO-protein ligase 99.1 6.6E-11 2.2E-15 101.4 4.1 141 578-723 4-149 (150)
90 3qou_A Protein YBBN; thioredox 99.1 3.3E-09 1.1E-13 102.3 16.5 175 558-736 104-283 (287)
91 1qqe_A Vesicular transport pro 99.1 1.1E-09 3.7E-14 106.1 13.0 200 520-734 32-266 (292)
92 3mv2_B Coatomer subunit epsilo 99.0 2.6E-08 8.9E-13 93.8 20.1 241 477-739 20-284 (310)
93 2r5s_A Uncharacterized protein 99.0 2.3E-09 8E-14 94.8 12.0 158 575-736 10-172 (176)
94 2pzi_A Probable serine/threoni 99.0 1E-09 3.6E-14 119.6 11.2 148 516-669 402-561 (681)
95 4ga2_A E3 SUMO-protein ligase 99.0 5.9E-10 2E-14 95.4 7.4 124 612-738 3-130 (150)
96 2fo7_A Synthetic consensus TPR 99.0 6.6E-09 2.2E-13 87.2 13.6 127 610-738 5-133 (136)
97 1hz4_A MALT regulatory protein 99.0 3.6E-08 1.2E-12 99.6 21.1 195 542-736 55-281 (373)
98 1qqe_A Vesicular transport pro 99.0 5.2E-09 1.8E-13 101.3 14.2 171 555-736 32-227 (292)
99 3gyz_A Chaperone protein IPGC; 99.0 2E-09 6.7E-14 91.4 9.7 102 637-738 30-134 (151)
100 3rjv_A Putative SEL1 repeat pr 99.0 3.5E-08 1.2E-12 90.1 18.8 162 569-739 16-199 (212)
101 3edt_B KLC 2, kinesin light ch 98.9 1.4E-08 4.7E-13 98.0 16.0 201 504-704 42-282 (283)
102 2vsy_A XCC0866; transferase, g 98.9 5.5E-09 1.9E-13 112.1 13.3 160 553-715 2-169 (568)
103 3urz_A Uncharacterized protein 98.9 1.2E-08 3.9E-13 93.1 13.4 154 548-706 12-189 (208)
104 4gco_A Protein STI-1; structur 98.9 4.9E-09 1.7E-13 86.3 9.5 92 645-736 16-109 (126)
105 2fo7_A Synthetic consensus TPR 98.9 3.7E-08 1.3E-12 82.4 14.8 131 573-706 3-135 (136)
106 2vgx_A Chaperone SYCD; alterna 98.9 4.7E-09 1.6E-13 89.4 8.4 95 642-736 21-117 (148)
107 2ifu_A Gamma-SNAP; membrane fu 98.9 4.5E-08 1.5E-12 95.5 16.4 218 483-729 4-253 (307)
108 3urz_A Uncharacterized protein 98.9 1.1E-08 3.8E-13 93.2 10.9 161 572-738 5-187 (208)
109 2ifu_A Gamma-SNAP; membrane fu 98.8 1.4E-08 4.7E-13 99.1 11.7 196 518-735 4-222 (307)
110 2vsy_A XCC0866; transferase, g 98.8 4.4E-08 1.5E-12 105.0 16.5 150 585-738 3-158 (568)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.5E-08 1.6E-12 89.7 14.4 127 573-705 8-152 (213)
112 4gco_A Protein STI-1; structur 98.8 1.3E-08 4.6E-13 83.7 9.4 115 602-718 8-125 (126)
113 3rjv_A Putative SEL1 repeat pr 98.8 8E-07 2.7E-11 81.0 21.1 173 523-705 4-199 (212)
114 3u3w_A Transcriptional activat 98.8 4.3E-07 1.5E-11 87.9 20.3 161 576-736 80-265 (293)
115 2pzi_A Probable serine/threoni 98.8 9.2E-08 3.2E-12 104.3 16.5 182 481-669 402-603 (681)
116 2qfc_A PLCR protein; TPR, HTH, 98.8 1.4E-07 4.9E-12 91.2 16.2 164 573-736 77-265 (293)
117 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.4E-07 8.3E-12 85.5 16.6 186 504-710 3-220 (225)
118 3qou_A Protein YBBN; thioredox 98.8 5E-08 1.7E-12 93.9 12.3 135 603-740 114-251 (287)
119 3dra_A Protein farnesyltransfe 98.7 1.1E-06 3.7E-11 83.9 21.1 148 585-735 124-285 (306)
120 2xcb_A PCRH, regulatory protei 98.7 6.2E-08 2.1E-12 81.9 10.3 94 643-736 19-114 (142)
121 2c2l_A CHIP, carboxy terminus 98.7 5.6E-08 1.9E-12 93.2 10.3 192 539-736 3-198 (281)
122 1hxi_A PEX5, peroxisome target 98.7 4.6E-08 1.6E-12 79.8 8.2 95 644-738 19-115 (121)
123 1a17_A Serine/threonine protei 98.7 2.3E-07 7.9E-12 80.9 12.7 127 608-736 15-145 (166)
124 3upv_A Heat shock protein STI1 98.7 1.2E-07 4.1E-12 78.2 10.1 94 643-736 5-100 (126)
125 2e2e_A Formate-dependent nitri 98.7 7.5E-08 2.6E-12 85.2 9.5 125 582-709 21-150 (177)
126 2lni_A Stress-induced-phosphop 98.7 1.7E-07 6E-12 78.1 11.2 114 607-723 17-133 (133)
127 1p5q_A FKBP52, FK506-binding p 98.6 8.3E-08 2.8E-12 94.6 10.2 144 570-735 146-292 (336)
128 2kck_A TPR repeat; tetratricop 98.6 1.6E-07 5.5E-12 75.4 9.6 99 642-740 6-109 (112)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.1E-06 3.7E-11 80.4 16.2 131 543-674 9-154 (213)
130 2r5s_A Uncharacterized protein 98.6 6.4E-07 2.2E-11 78.9 13.5 152 25-178 8-167 (176)
131 4gcn_A Protein STI-1; structur 98.6 1.2E-07 4E-12 78.1 8.0 93 644-736 10-111 (127)
132 3dra_A Protein farnesyltransfe 98.6 1.5E-05 5.1E-10 76.0 23.7 230 482-717 44-302 (306)
133 4f3v_A ESX-1 secretion system 98.6 6.7E-07 2.3E-11 83.1 13.8 125 612-739 108-239 (282)
134 3u3w_A Transcriptional activat 98.6 5.6E-06 1.9E-10 80.0 21.3 160 545-704 80-267 (293)
135 1na0_A Designed protein CTPR3; 98.6 4.4E-07 1.5E-11 74.4 11.5 114 607-722 10-125 (125)
136 3q49_B STIP1 homology and U bo 98.6 3E-07 1E-11 77.1 10.5 95 642-736 9-105 (137)
137 2vyi_A SGTA protein; chaperone 98.6 3E-07 1E-11 76.3 10.4 116 607-724 13-130 (131)
138 3gyz_A Chaperone protein IPGC; 98.6 4E-07 1.4E-11 77.1 10.9 104 602-708 31-138 (151)
139 2uy1_A Cleavage stimulation fa 98.6 2.6E-05 8.9E-10 80.8 26.8 349 317-702 28-412 (493)
140 3sz7_A HSC70 cochaperone (SGT) 98.6 1.9E-07 6.4E-12 81.3 9.2 110 605-717 10-122 (164)
141 2vgx_A Chaperone SYCD; alterna 98.5 7.3E-08 2.5E-12 81.9 5.8 118 593-714 9-129 (148)
142 2fbn_A 70 kDa peptidylprolyl i 98.5 4.5E-08 1.5E-12 88.4 4.3 169 547-736 11-185 (198)
143 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.8E-11 78.9 14.3 81 552-632 4-92 (203)
144 1elw_A TPR1-domain of HOP; HOP 98.5 4.8E-07 1.6E-11 73.4 10.1 91 645-735 7-99 (118)
145 2qfc_A PLCR protein; TPR, HTH, 98.5 2.9E-06 9.7E-11 82.0 16.3 163 541-703 76-266 (293)
146 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4.1E-11 77.3 12.4 122 616-739 20-146 (177)
147 2lni_A Stress-induced-phosphop 98.5 6.1E-07 2.1E-11 74.7 9.7 98 641-738 15-114 (133)
148 2dba_A Smooth muscle cell asso 98.4 1.9E-06 6.6E-11 73.2 12.3 110 607-719 29-144 (148)
149 1na0_A Designed protein CTPR3; 98.4 1.1E-06 3.7E-11 72.1 10.3 98 642-739 9-108 (125)
150 4f3v_A ESX-1 secretion system 98.4 1.9E-06 6.6E-11 80.0 12.3 139 575-718 106-251 (282)
151 2hr2_A Hypothetical protein; a 98.4 5.7E-07 2E-11 75.0 7.8 61 676-736 59-130 (159)
152 2xcb_A PCRH, regulatory protei 98.4 7.1E-07 2.4E-11 75.3 8.6 107 607-715 19-127 (142)
153 3gw4_A Uncharacterized protein 98.4 3.5E-06 1.2E-10 76.2 13.8 175 518-705 5-198 (203)
154 2dba_A Smooth muscle cell asso 98.4 1.4E-06 4.9E-11 74.0 10.5 99 641-739 27-130 (148)
155 2vyi_A SGTA protein; chaperone 98.4 1.5E-06 5.2E-11 71.9 10.2 98 642-739 12-111 (131)
156 3upv_A Heat shock protein STI1 98.4 8.8E-07 3E-11 72.9 8.3 109 608-718 6-122 (126)
157 2uy1_A Cleavage stimulation fa 98.4 5.8E-05 2E-09 78.2 23.7 364 339-736 16-412 (493)
158 3sz7_A HSC70 cochaperone (SGT) 98.4 1.4E-06 4.9E-11 75.6 9.9 94 571-668 11-105 (164)
159 2xev_A YBGF; tetratricopeptide 98.4 1.6E-06 5.4E-11 71.7 9.7 99 612-710 8-112 (129)
160 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.1E-06 7.2E-11 88.6 12.6 143 570-734 267-412 (457)
161 1elw_A TPR1-domain of HOP; HOP 98.4 2.8E-06 9.7E-11 68.6 10.9 110 607-718 5-116 (118)
162 3q7a_A Farnesyltransferase alp 98.3 3.3E-05 1.1E-09 74.4 18.6 32 705-736 299-330 (349)
163 1wao_1 Serine/threonine protei 98.3 9.9E-07 3.4E-11 91.4 8.6 119 611-732 11-134 (477)
164 2if4_A ATFKBP42; FKBP-like, al 98.3 1.1E-06 3.8E-11 86.5 8.6 151 570-740 178-331 (338)
165 1a17_A Serine/threonine protei 98.3 2.9E-06 9.9E-11 73.8 10.2 97 643-739 14-112 (166)
166 3q49_B STIP1 homology and U bo 98.3 2.4E-06 8.1E-11 71.5 8.8 101 604-706 7-109 (137)
167 3rkv_A Putative peptidylprolyl 98.3 1.5E-06 5.1E-11 75.3 7.6 112 607-718 12-142 (162)
168 1elr_A TPR2A-domain of HOP; HO 98.3 1.9E-06 6.5E-11 71.3 7.9 111 607-720 5-124 (131)
169 3k9i_A BH0479 protein; putativ 98.3 4.5E-07 1.6E-11 73.4 3.9 91 619-710 3-97 (117)
170 2c2l_A CHIP, carboxy terminus 98.3 3.3E-06 1.1E-10 80.7 10.5 113 605-720 3-118 (281)
171 4b4t_Q 26S proteasome regulato 98.2 8.3E-06 2.8E-10 84.1 13.9 189 548-736 12-244 (434)
172 1hxi_A PEX5, peroxisome target 98.2 3.9E-06 1.3E-10 68.2 7.8 97 609-708 20-119 (121)
173 4gcn_A Protein STI-1; structur 98.2 1.4E-05 4.9E-10 65.4 11.4 60 573-633 10-69 (127)
174 2fbn_A 70 kDa peptidylprolyl i 98.2 6.1E-06 2.1E-10 74.2 9.7 96 643-738 39-152 (198)
175 2xev_A YBGF; tetratricopeptide 98.2 8.8E-06 3E-10 67.1 9.8 93 646-738 6-106 (129)
176 3ro3_A PINS homolog, G-protein 98.2 3.7E-06 1.3E-10 72.7 7.6 93 644-736 51-157 (164)
177 3q7a_A Farnesyltransferase alp 98.2 0.00072 2.5E-08 65.1 23.9 225 481-711 65-340 (349)
178 3dss_A Geranylgeranyl transfer 98.1 0.00021 7.1E-09 68.5 19.9 178 556-736 90-303 (331)
179 2l6j_A TPR repeat-containing p 98.1 6.3E-07 2.1E-11 71.8 2.0 93 641-733 3-103 (111)
180 1ihg_A Cyclophilin 40; ppiase 98.1 5.2E-06 1.8E-10 82.7 8.9 138 571-730 223-363 (370)
181 3ma5_A Tetratricopeptide repea 98.1 7.7E-06 2.6E-10 63.7 8.1 66 671-736 4-69 (100)
182 3bee_A Putative YFRE protein; 98.1 8.6E-06 3E-10 61.8 8.1 72 671-743 3-77 (93)
183 3k9i_A BH0479 protein; putativ 98.1 1.6E-06 5.4E-11 70.2 4.3 84 654-737 2-90 (117)
184 3rkv_A Putative peptidylprolyl 98.1 3.8E-06 1.3E-10 72.7 6.9 92 645-736 14-125 (162)
185 1p5q_A FKBP52, FK506-binding p 98.1 2.1E-05 7E-10 77.4 12.5 145 519-668 127-291 (336)
186 2hr2_A Hypothetical protein; a 98.1 5.1E-06 1.7E-10 69.3 6.7 75 644-718 59-146 (159)
187 2kck_A TPR repeat; tetratricop 98.1 1.6E-05 5.5E-10 63.4 9.5 100 607-708 7-111 (112)
188 1elr_A TPR2A-domain of HOP; HO 98.1 1.2E-05 4E-10 66.4 8.3 109 572-681 5-119 (131)
189 1dce_A Protein (RAB geranylger 98.0 0.00011 3.9E-09 77.3 16.8 169 555-726 44-244 (567)
190 1zu2_A Mitochondrial import re 98.0 3.6E-06 1.2E-10 70.0 4.0 85 654-738 14-121 (158)
191 2kat_A Uncharacterized protein 98.0 9.8E-06 3.4E-10 65.2 6.5 64 642-705 19-84 (115)
192 2if4_A ATFKBP42; FKBP-like, al 98.0 1.3E-05 4.5E-10 78.9 8.6 150 540-709 179-334 (338)
193 1na3_A Designed protein CTPR2; 98.0 2.2E-05 7.5E-10 59.8 7.9 81 642-722 9-91 (91)
194 3ro3_A PINS homolog, G-protein 98.0 2.4E-05 8.3E-10 67.4 8.9 133 573-705 11-160 (164)
195 3lvg_A Clathrin heavy chain 1; 97.9 8E-06 2.7E-10 79.4 5.3 259 22-324 53-325 (624)
196 4b4t_Q 26S proteasome regulato 97.9 6E-05 2.1E-09 77.5 12.5 159 578-736 11-203 (434)
197 1wao_1 Serine/threonine protei 97.9 1.8E-05 6.1E-10 82.0 8.1 82 550-632 16-100 (477)
198 3n71_A Histone lysine methyltr 97.9 1.4E-05 4.8E-10 81.9 7.0 123 616-738 319-465 (490)
199 3dss_A Geranylgeranyl transfer 97.9 0.00053 1.8E-08 65.7 17.2 184 552-738 41-268 (331)
200 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 3.4E-05 1.2E-09 79.5 9.5 95 644-738 270-381 (457)
201 1ihg_A Cyclophilin 40; ppiase 97.8 2.8E-05 9.6E-10 77.3 7.8 66 673-738 272-337 (370)
202 1klx_A Cysteine rich protein B 97.8 5.4E-05 1.9E-09 62.9 8.0 89 648-738 31-127 (138)
203 2l6j_A TPR repeat-containing p 97.7 6.6E-05 2.3E-09 59.6 7.3 67 673-739 3-69 (111)
204 1na3_A Designed protein CTPR2; 97.6 0.00011 3.8E-09 55.7 6.6 66 673-738 8-73 (91)
205 2kc7_A BFR218_protein; tetratr 97.6 5.8E-05 2E-09 58.5 4.7 80 647-734 5-87 (99)
206 3lvg_A Clathrin heavy chain 1; 97.5 5.5E-06 1.9E-10 80.5 -2.2 456 53-628 53-534 (624)
207 1dce_A Protein (RAB geranylger 97.5 0.00039 1.3E-08 73.2 11.4 154 582-739 39-223 (567)
208 2kat_A Uncharacterized protein 97.5 0.0002 6.8E-09 57.3 6.7 76 661-736 4-81 (115)
209 1klx_A Cysteine rich protein B 97.4 0.0016 5.6E-08 53.8 11.9 112 585-705 9-128 (138)
210 1zu2_A Mitochondrial import re 97.4 8.4E-05 2.9E-09 61.8 3.5 50 659-708 63-125 (158)
211 2kc7_A BFR218_protein; tetratr 97.4 0.00031 1.1E-08 54.2 6.3 60 680-739 6-66 (99)
212 3ly7_A Transcriptional activat 97.3 0.00085 2.9E-08 64.5 9.6 68 671-739 274-341 (372)
213 3ma5_A Tetratricopeptide repea 97.2 0.0011 3.8E-08 51.2 7.9 83 570-653 6-88 (100)
214 3n71_A Histone lysine methyltr 97.2 0.0016 5.5E-08 66.8 10.9 123 581-703 319-464 (490)
215 3ly7_A Transcriptional activat 97.0 0.018 6.2E-07 55.3 15.2 142 570-714 193-349 (372)
216 3qww_A SET and MYND domain-con 97.0 0.00044 1.5E-08 69.6 4.2 59 677-735 343-409 (433)
217 3qwp_A SET and MYND domain-con 96.9 0.0016 5.4E-08 65.7 7.9 60 676-735 331-398 (429)
218 1qsa_A Protein (soluble lytic 96.8 0.44 1.5E-05 50.1 25.6 114 585-702 228-347 (618)
219 3u64_A Protein TP_0956; tetrat 96.8 0.0036 1.2E-07 57.4 8.2 86 659-744 180-276 (301)
220 1pc2_A Mitochondria fission pr 96.6 0.0025 8.5E-08 52.3 5.4 93 620-714 12-111 (152)
221 3qww_A SET and MYND domain-con 96.6 0.0095 3.2E-07 59.9 10.5 93 618-710 310-423 (433)
222 2v5f_A Prolyl 4-hydroxylase su 96.5 0.0069 2.4E-07 46.9 7.3 74 642-715 5-87 (104)
223 1pc2_A Mitochondria fission pr 96.5 0.0069 2.4E-07 49.7 7.0 65 672-736 30-99 (152)
224 3qwp_A SET and MYND domain-con 96.4 0.0099 3.4E-07 59.9 9.1 99 615-713 296-415 (429)
225 1wy6_A Hypothetical protein ST 96.3 0.23 7.7E-06 39.1 14.0 141 581-740 17-157 (172)
226 3bee_A Putative YFRE protein; 96.3 0.031 1.1E-06 41.9 9.4 69 639-707 3-76 (93)
227 2v5f_A Prolyl 4-hydroxylase su 96.1 0.013 4.4E-07 45.4 6.7 66 673-738 4-76 (104)
228 3mkq_B Coatomer subunit alpha; 95.8 0.4 1.4E-05 40.4 14.7 130 547-700 12-141 (177)
229 3mkq_A Coatomer beta'-subunit; 95.7 0.11 3.9E-06 58.0 14.9 49 549-599 661-709 (814)
230 3mkq_A Coatomer beta'-subunit; 95.7 0.072 2.5E-06 59.6 13.1 75 544-632 633-707 (814)
231 1nzn_A CGI-135 protein, fissio 95.4 0.094 3.2E-06 41.3 8.6 90 623-714 18-114 (126)
232 1nzn_A CGI-135 protein, fissio 95.2 0.038 1.3E-06 43.5 6.0 83 657-739 16-105 (126)
233 1wy6_A Hypothetical protein ST 95.2 0.84 2.9E-05 36.0 13.0 140 380-537 18-157 (172)
234 4h7y_A Dual specificity protei 94.8 0.075 2.6E-06 42.8 6.7 103 603-707 10-127 (161)
235 3mkq_B Coatomer subunit alpha; 94.8 1.6 5.4E-05 36.8 15.2 127 516-669 16-142 (177)
236 3u64_A Protein TP_0956; tetrat 94.3 0.085 2.9E-06 48.5 6.9 63 644-706 201-272 (301)
237 4gns_B Protein CSD3, chitin bi 94.3 0.079 2.7E-06 56.7 7.7 58 677-734 340-397 (754)
238 1y8m_A FIS1; mitochondria, unk 94.1 0.29 9.8E-06 39.2 8.6 76 638-713 35-116 (144)
239 4ady_A RPN2, 26S proteasome re 94.1 8.4 0.00029 42.3 32.2 257 347-609 383-664 (963)
240 3o48_A Mitochondria fission 1 93.6 0.13 4.6E-06 40.5 5.8 78 637-714 35-118 (134)
241 4b4t_P 26S proteasome regulato 93.5 5.9 0.0002 39.9 19.4 185 484-668 30-244 (445)
242 4h7y_A Dual specificity protei 93.3 0.87 3E-05 36.8 10.0 99 568-669 10-121 (161)
243 3lpz_A GET4 (YOR164C homolog); 91.0 11 0.00037 35.7 18.7 135 157-313 37-177 (336)
244 2ff4_A Probable regulatory pro 90.9 0.38 1.3E-05 47.7 6.8 58 679-736 176-233 (388)
245 3txn_A 26S proteasome regulato 90.9 7.3 0.00025 38.1 15.6 23 577-599 105-127 (394)
246 1y8m_A FIS1; mitochondria, unk 90.7 2 6.8E-05 34.5 9.2 68 671-738 36-107 (144)
247 2wpv_A GET4, UPF0363 protein Y 90.6 11 0.00039 35.3 16.5 118 157-296 35-158 (312)
248 3o48_A Mitochondria fission 1 90.4 0.84 2.9E-05 36.0 6.8 66 671-736 37-106 (134)
249 1zbp_A Hypothetical protein VP 90.3 2.2 7.4E-05 38.7 10.3 124 579-709 5-135 (273)
250 3ffl_A Anaphase-promoting comp 89.5 1.3 4.6E-05 36.6 7.6 125 544-682 24-163 (167)
251 3ffl_A Anaphase-promoting comp 89.1 0.94 3.2E-05 37.5 6.5 112 611-734 25-148 (167)
252 4b4t_P 26S proteasome regulato 88.6 11 0.00037 37.9 15.5 184 519-702 30-246 (445)
253 2ff4_A Probable regulatory pro 85.7 5.1 0.00017 39.5 11.0 74 574-648 174-251 (388)
254 1zbp_A Hypothetical protein VP 85.5 1.4 4.8E-05 39.9 6.0 56 651-706 6-63 (273)
255 1v54_E Cytochrome C oxidase po 83.9 4.7 0.00016 29.9 6.9 63 100-163 25-87 (109)
256 4gns_B Protein CSD3, chitin bi 83.4 5.4 0.00018 42.8 10.4 52 579-632 345-397 (754)
257 1v54_E Cytochrome C oxidase po 82.6 6.7 0.00023 29.1 7.3 60 589-650 28-87 (109)
258 3ltm_A Alpha-REP4; protein eng 82.5 24 0.00082 30.8 16.2 167 40-215 19-185 (211)
259 2uwj_G Type III export protein 81.7 10 0.00035 27.9 7.9 79 134-216 20-98 (115)
260 2p58_C Putative type III secre 80.5 11 0.00037 27.8 7.7 79 134-216 21-99 (116)
261 3lpz_A GET4 (YOR164C homolog); 80.4 40 0.0014 31.9 21.6 109 344-463 41-160 (336)
262 3ltj_A Alpharep-4; protein eng 78.3 32 0.0011 29.6 14.6 159 48-215 22-180 (201)
263 4fhn_B Nucleoporin NUP120; pro 77.3 25 0.00086 40.5 14.2 163 28-205 817-990 (1139)
264 4fhn_B Nucleoporin NUP120; pro 77.0 28 0.00095 40.2 14.4 82 643-725 900-988 (1139)
265 2wpv_A GET4, UPF0363 protein Y 76.1 52 0.0018 30.9 19.9 164 444-633 38-215 (312)
266 2uwj_G Type III export protein 75.4 22 0.00075 26.2 9.5 83 318-407 21-105 (115)
267 3esl_A Checkpoint serine/threo 74.8 19 0.00064 31.0 9.1 50 655-704 92-145 (202)
268 2p58_C Putative type III secre 74.4 24 0.00081 26.1 9.3 83 318-407 22-106 (116)
269 4b4t_R RPN7, 26S proteasome re 74.0 15 0.00051 36.7 9.9 89 645-733 134-233 (429)
270 2y69_E Cytochrome C oxidase su 73.6 13 0.00044 29.3 6.9 62 101-163 69-130 (152)
271 2y69_E Cytochrome C oxidase su 73.0 16 0.00054 28.8 7.3 60 589-650 71-130 (152)
272 1wdy_A 2-5A-dependent ribonucl 71.9 57 0.002 29.7 13.3 53 28-80 7-62 (285)
273 1n11_A Ankyrin; clathrin, BAND 71.6 84 0.0029 31.2 15.7 52 28-79 16-69 (437)
274 1n11_A Ankyrin; clathrin, BAND 70.9 59 0.002 32.3 13.9 165 9-182 28-203 (437)
275 4ady_A RPN2, 26S proteasome re 69.7 1.4E+02 0.0048 33.0 38.5 44 68-111 52-96 (963)
276 2wvi_A Mitotic checkpoint seri 68.5 26 0.0009 29.0 8.3 79 637-718 58-137 (164)
277 4a1g_A Mitotic checkpoint seri 66.5 29 0.00098 28.3 8.0 34 671-704 98-131 (152)
278 1wdy_A 2-5A-dependent ribonucl 66.4 28 0.00097 31.9 9.8 56 160-220 7-66 (285)
279 4b4t_R RPN7, 26S proteasome re 65.7 17 0.00059 36.3 8.3 95 542-636 133-238 (429)
280 1oyz_A Hypothetical protein YI 63.5 90 0.0031 28.5 18.7 21 270-290 204-224 (280)
281 3ltj_A Alpharep-4; protein eng 61.4 77 0.0026 27.1 18.9 18 568-585 118-135 (201)
282 3eu9_A Huntingtin-interacting 59.1 32 0.0011 30.5 8.4 20 29-48 45-64 (240)
283 3ltm_A Alpha-REP4; protein eng 58.3 91 0.0031 26.9 18.9 17 569-585 124-140 (211)
284 4aez_C MAD3, mitotic spindle c 57.8 38 0.0013 29.7 7.8 69 637-705 112-181 (223)
285 4g8k_A 2-5A-dependent ribonucl 54.4 1.4E+02 0.0049 28.0 13.7 80 139-223 218-303 (337)
286 3b7b_A Euchromatic histone-lys 52.5 1E+02 0.0034 27.1 10.6 195 10-214 26-235 (237)
287 1k1a_A B-cell lymphoma 3-encod 52.3 62 0.0021 28.6 9.1 27 93-119 14-40 (241)
288 3kea_A K1L; tropism, ANK repea 51.7 1.4E+02 0.0049 27.3 12.8 45 282-326 136-181 (285)
289 3eu9_A Huntingtin-interacting 48.5 71 0.0024 28.1 8.9 14 166-179 50-63 (240)
290 4b4t_S RPN3, 26S proteasome re 47.6 56 0.0019 33.1 8.2 25 608-632 233-257 (523)
291 1ya0_A SMG-7 transcript varian 46.1 43 0.0015 34.0 7.3 56 679-734 157-212 (497)
292 3esl_A Checkpoint serine/threo 45.2 1.3E+02 0.0044 25.9 8.9 55 99-153 93-148 (202)
293 3bqo_A Telomeric repeat-bindin 43.8 1.5E+02 0.0052 25.2 9.3 44 288-331 94-145 (211)
294 2qx5_A Nucleoporin NIC96; mRNA 43.5 1.5E+02 0.005 31.4 11.0 228 476-734 300-564 (661)
295 2rfa_A Transient receptor pote 42.4 1.5E+02 0.0051 25.8 10.0 53 281-334 127-182 (232)
296 3eiq_C Programmed cell death p 42.4 2.4E+02 0.0081 27.0 12.2 66 543-608 220-290 (358)
297 3txn_A 26S proteasome regulato 41.9 2.6E+02 0.0087 27.3 26.3 215 511-738 105-344 (394)
298 4b4t_S RPN3, 26S proteasome re 41.0 64 0.0022 32.7 7.4 70 642-711 231-307 (523)
299 3i5p_A Nucleoporin NUP170; hel 37.5 3.5E+02 0.012 27.6 12.9 68 670-737 174-246 (525)
300 3aji_A 26S proteasome non-ATPa 37.5 1.4E+02 0.0048 25.9 9.0 54 162-220 10-67 (231)
301 3kea_A K1L; tropism, ANK repea 37.0 2.4E+02 0.0083 25.7 14.0 48 162-209 133-181 (285)
302 2f8y_A Notch homolog 1, transl 36.8 1E+02 0.0035 26.7 7.9 205 9-224 5-222 (223)
303 3kae_A CDC27, possible protein 36.7 1.8E+02 0.0063 24.1 12.1 80 651-733 42-139 (242)
304 1k1a_A B-cell lymphoma 3-encod 35.7 2.2E+02 0.0076 24.8 13.5 15 283-297 87-101 (241)
305 2zu6_B Programmed cell death p 35.5 89 0.003 29.2 7.1 63 275-337 169-236 (307)
306 2fu4_A Ferric uptake regulatio 34.2 1.2E+02 0.0041 21.2 6.5 62 109-171 6-68 (83)
307 3b7b_A Euchromatic histone-lys 34.1 1.2E+02 0.0041 26.6 7.9 16 165-180 84-99 (237)
308 1qsa_A Protein (soluble lytic 33.9 4.3E+02 0.015 27.6 41.5 390 282-699 16-438 (618)
309 3hra_A Ankyrin repeat family p 33.7 2.1E+02 0.0073 24.0 11.2 58 281-338 112-173 (201)
310 3kae_A CDC27, possible protein 32.1 2.2E+02 0.0075 23.7 14.4 78 552-631 45-139 (242)
311 3hra_A Ankyrin repeat family p 31.7 1.8E+02 0.0061 24.5 8.4 162 11-178 21-198 (201)
312 3aji_A 26S proteasome non-ATPa 31.0 2.2E+02 0.0074 24.7 9.1 180 27-221 7-200 (231)
313 2d2s_A Exocyst complex compone 30.0 1.8E+02 0.0062 25.8 7.9 26 189-214 94-119 (235)
314 1bpo_A Protein (clathrin); cla 29.6 4.3E+02 0.015 26.3 12.7 105 258-363 347-454 (494)
315 4g8k_A 2-5A-dependent ribonucl 29.5 3.5E+02 0.012 25.2 15.6 147 279-438 172-328 (337)
316 3jxi_A Vanilloid receptor-rela 29.2 92 0.0032 27.9 6.3 79 3-82 17-118 (260)
317 1oyz_A Hypothetical protein YI 29.1 3.2E+02 0.011 24.6 22.6 17 641-657 205-221 (280)
318 3eiq_C Programmed cell death p 28.9 1.8E+02 0.0061 27.9 8.1 28 275-302 57-84 (358)
319 2nsz_A Programmed cell death p 28.8 2.1E+02 0.0072 22.4 7.6 64 543-606 10-78 (129)
320 2rfa_A Transient receptor pote 28.7 1.8E+02 0.0062 25.3 8.1 15 197-211 205-219 (232)
321 2b7e_A PRE-mRNA processing pro 27.2 81 0.0028 20.7 3.7 33 202-234 2-35 (59)
322 4gq2_M Nucleoporin NUP120; bet 26.2 2.7E+02 0.0091 31.2 10.3 115 577-708 816-932 (950)
323 4gq2_M Nucleoporin NUP120; bet 25.6 2E+02 0.007 32.2 9.2 52 29-81 816-867 (950)
324 3ljn_A Hypothetical protein; a 25.2 2.6E+02 0.009 26.5 9.2 55 165-219 60-114 (364)
325 3ljn_A Hypothetical protein; a 25.2 2.7E+02 0.0092 26.5 9.2 184 27-221 21-239 (364)
326 3jxi_A Vanilloid receptor-rela 24.8 2.4E+02 0.0081 25.1 8.3 20 343-362 142-161 (260)
327 2xig_A Ferric uptake regulatio 24.6 2.3E+02 0.0079 22.9 7.1 67 102-169 9-75 (150)
328 1wgl_A TOLL-interacting protei 24.4 70 0.0024 21.0 3.1 24 719-742 34-57 (59)
329 2d2s_A Exocyst complex compone 24.2 1.9E+02 0.0065 25.7 6.9 89 576-668 23-117 (235)
330 2nsz_A Programmed cell death p 24.2 1.9E+02 0.0064 22.7 6.2 62 275-336 10-76 (129)
331 2ion_A PDCD4, programmed cell 24.0 1.6E+02 0.0055 23.9 6.0 64 543-606 12-80 (152)
332 2fe3_A Peroxide operon regulat 23.9 1.4E+02 0.0047 24.0 5.6 63 109-172 11-73 (145)
333 3bqo_A Telomeric repeat-bindin 23.6 3.4E+02 0.012 23.1 7.7 36 682-717 125-160 (211)
334 2r9g_A AAA ATPase, central reg 23.4 3.5E+02 0.012 23.2 8.6 47 473-520 14-63 (204)
335 3qye_A TBC1 domain family memb 23.3 4.1E+02 0.014 25.0 9.8 75 106-180 209-287 (331)
336 3bu8_A Telomeric repeat-bindin 23.1 2.8E+02 0.0096 24.0 7.2 69 587-658 88-163 (235)
337 1bpo_A Protein (clathrin); cla 22.6 5.8E+02 0.02 25.4 12.1 127 533-669 354-483 (494)
338 4ets_A Ferric uptake regulatio 22.2 2.9E+02 0.0098 22.7 7.3 70 102-172 14-86 (162)
339 2w57_A Ferric uptake regulatio 20.8 2.5E+02 0.0086 22.6 6.6 63 109-172 6-69 (150)
340 2fe3_A Peroxide operon regulat 20.3 2.2E+02 0.0077 22.7 6.2 46 308-353 26-71 (145)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-38 Score=341.40 Aligned_cols=500 Identities=7% Similarity=-0.049 Sum_probs=350.7
Q ss_pred hhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHH
Q 041741 64 QCKSDDLEFAYKLFDEMPERNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCH 143 (748)
Q Consensus 64 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 143 (748)
....+.+..+...+..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..++.+.|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45567777888888888888899999999999999999999999999985 5678889999999999999999999999
Q ss_pred HHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCC-------------------CeehHHHHHHHHHcCCCHHH
Q 041741 144 GLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEP-------------------NEVTFTAMMSGLAKTDRVVE 204 (748)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 204 (748)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++..|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 678889999999999999999999999965432 25567777777777777777
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCCcchhcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 041741 205 ALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAK 284 (748)
Q Consensus 205 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 284 (748)
|+++|++|.+.+ |+..+.
T Consensus 219 A~~~~~~~~~~~--p~~~~~------------------------------------------------------------ 236 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEA------------------------------------------------------------ 236 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHH------------------------------------------------------------
T ss_pred HHHHHHHHHHhC--chhhHH------------------------------------------------------------
Confidence 777777776542 221111
Q ss_pred cCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChh--HHHHH-HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHh
Q 041741 285 NGDMDSAEVIFSNLPERSVVSWNVMIAGYGQKYQST--KAIEL-LQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMF 361 (748)
Q Consensus 285 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~-~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 361 (748)
+..+...+...+..+ .+..+ +..+...+..+...+|..++..|.+.|++++|.++|
T Consensus 237 ---------------------~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 237 ---------------------FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp ---------------------HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred ---------------------HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 111111110000000 00011 233333333444445555566666777777777777
Q ss_pred ccCCC--CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchh
Q 041741 362 DSMPS--PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDN 439 (748)
Q Consensus 362 ~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 439 (748)
+.+.. ++..+++.++..|.+.|++++|+++|+++.+.+ |+
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~------------------------------------ 337 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PY------------------------------------ 337 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------------------------------------
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cc------------------------------------
Confidence 77765 666777777777777777777777777776542 11
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCC
Q 041741 440 YVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLS 519 (748)
Q Consensus 440 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 519 (748)
+..+++.++.++.+.|++++|..+++++.... +.+..++..++..|.+.|
T Consensus 338 -----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 338 -----------------------------NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp -----------------------------CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTT
T ss_pred -----------------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhc
Confidence 33344455555555555555555555555331 334555556666666666
Q ss_pred CchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 041741 520 SSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKD 596 (748)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 596 (748)
++++|..+|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ ++..+|..++.+|.+.|++++|.++|++
T Consensus 388 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 388 KISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666665543 33566777888888888888888888887652 4778888899999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhh---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCC--
Q 041741 597 MIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDH---GVEPI--LDHYTCMIDCLGRAGHFHEAEMLIDEMP-- 669 (748)
Q Consensus 597 m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 669 (748)
+.+.. +.+..+|..++..|.+.|++++|+.+|+++.... +..|+ ..++..++.+|.+.|++++|.+.++++.
T Consensus 467 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 98863 5567889999999999999999999999885332 55777 6789999999999999999999998875
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhh
Q 041741 670 CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSS 720 (748)
Q Consensus 670 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 720 (748)
.+.++.+|..++..|...|++++|.+.++++++++|+++.++..++.+|..
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 445788999999999999999999999999999999999999999988854
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-36 Score=327.38 Aligned_cols=499 Identities=12% Similarity=-0.007 Sum_probs=381.1
Q ss_pred HHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCCcchhc
Q 041741 165 YAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVESDVFA 244 (748)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~ 244 (748)
+...|....+...+..+..++...|+.++..+.+.|++++|+.+|++|.+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----------------------------- 113 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI----------------------------- 113 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh-----------------------------
Confidence 345566667777777777778888999999999999999999999988643
Q ss_pred ccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCC--CCCcccHHHHHHHHHhcCChhHH
Q 041741 245 QSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLP--ERSVVSWNVMIAGYGQKYQSTKA 322 (748)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 322 (748)
.|+..++..++.+|.+.|++++|..+|+.+. .++..+++.++.+|.+.|++++|
T Consensus 114 ------------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 169 (597)
T 2xpi_A 114 ------------------------TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGA 169 (597)
T ss_dssp ------------------------HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------------CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHH
Confidence 2444556667777788888888888887773 35666777777777777777777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 041741 323 IELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKP 402 (748)
Q Consensus 323 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 402 (748)
+++|+++ .|+... ..++...++ ++.-...+..+|+.++.+|.+.|++++|+++|++|.+. .|
T Consensus 170 ~~~~~~~-----~~~~~~----~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p 231 (597)
T 2xpi_A 170 LNLLGET-----NPFRKD----EKNANKLLM-------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--DA 231 (597)
T ss_dssp HHHHCSS-----CTTC--------------C-------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHhcc-----CCcccc----ccccccccc-------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cc
Confidence 7777642 121100 001111110 11111245778999999999999999999999999886 34
Q ss_pred C-HhhHHHHHHHhhccCChHHHH--HH-HHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHH
Q 041741 403 D-RTTLAIILSSCAAMGILESGK--QV-HAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPE--LDIVCWNSM 476 (748)
Q Consensus 403 ~-~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l 476 (748)
+ ...+..+...+...+..+... .+ +..+...+..+...++..++..|.+.|++++|.++|+++.+ +++.+|+.+
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 311 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHH
Confidence 4 334444443333332222111 11 33344444444556667778889999999999999999987 788899999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 041741 477 IAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDI 556 (748)
Q Consensus 477 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (748)
+..|.+.|++++|..+|+++...+ +.+..++..++.++...|++++|..+++.+.+.. +.+..+++.++.+|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 999999999999999999999765 3467789999999999999999999999998654 56788999999999999999
Q ss_pred HHHHHHhhhcC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhh
Q 041741 557 YGARQFFDMMH---GKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQ 633 (748)
Q Consensus 557 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 633 (748)
++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|..+|+++.
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999875 3578899999999999999999999999999864 5577899999999999999999999999995
Q ss_pred hhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-------CCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041741 634 LDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-------CKDD--PVIWEVLLSSCRLHANVRLAKRAAEELFRLD 704 (748)
Q Consensus 634 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 704 (748)
.. .+.+..++..++.+|.+.|++++|.++++++. ..|+ ...|..++..|...|++++|...++++++.+
T Consensus 469 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 469 AL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred Hh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 33 23457889999999999999999999999883 2566 6789999999999999999999999999999
Q ss_pred CCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 705 PKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 705 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
|+++.++..++.+|...|++++|.++++++.+..+
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999887544
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.2e-24 Score=223.07 Aligned_cols=373 Identities=13% Similarity=0.059 Sum_probs=264.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHhccCCC---CCcchHHHHHHHHHccCCH
Q 041741 310 IAGYGQKYQSTKAIELLQRMKSCGFEPDE-VTSINMLVACVRSGDIKTGREMFDSMPS---PSVSSWNAMLSSYSQSENH 385 (748)
Q Consensus 310 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~ 385 (748)
...+.+.|++++|++.++.+.+. .|+. ..+..+...+...|+++.|...++.... .+...|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 34456677777777777776654 2333 3333444455566666666666655442 3445566666667777777
Q ss_pred HHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhh
Q 041741 386 KEAIKLFREMQFRGVKPD-RTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHR 464 (748)
Q Consensus 386 ~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 464 (748)
++|+..|+++.+. .|+ ...+..+..++...|+++.|...+..+++..+.
T Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------------------------- 133 (388)
T 1w3b_A 84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD---------------------------- 133 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT----------------------------
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------------------
Confidence 7777777666654 233 334555555555555555555555555443322
Q ss_pred CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHH
Q 041741 465 IPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGS 544 (748)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 544 (748)
+...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|+++.|...++.+.+.. +.+...+.
T Consensus 134 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 207 (388)
T 1w3b_A 134 ----LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI 207 (388)
T ss_dssp ----CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 23345555666666677777777777766542 2345667777777777777777777777777654 33566777
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCC
Q 041741 545 ALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGL 621 (748)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 621 (748)
.+...+...|++++|...+++..+ .+..++..++.++...|++++|+..++++.+.+ +.+..++..+..++...|+
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC
Confidence 788888888888888888876542 357788888999999999999999999998853 3356688888999999999
Q ss_pred hHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 041741 622 VDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEE 699 (748)
Q Consensus 622 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 699 (748)
+++|+..++++... .+.+..++..++.++.+.|++++|...++++. .+.++..+..++..+...|++++|...+++
T Consensus 287 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 287 VAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999988533 34557788889999999999999999998875 344577888899999999999999999999
Q ss_pred HHhcCCCCCcchHHHhHHHhhcCC
Q 041741 700 LFRLDPKNSAPYSLLANIYSSLGR 723 (748)
Q Consensus 700 ~~~~~p~~~~~~~~l~~~~~~~g~ 723 (748)
+++++|+++.++..++.++...|+
T Consensus 365 a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 365 AIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.7e-24 Score=220.37 Aligned_cols=353 Identities=15% Similarity=0.096 Sum_probs=293.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 041741 376 LSSYSQSENHKEAIKLFREMQFRGVKPD-RTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQR 454 (748)
Q Consensus 376 l~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 454 (748)
...+.+.|++++|.+.+..+.+. .|+ ...+..+...+...|+++.+...+...++..+ .+...+..+..+|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 34556677778887777777665 344 33444455566677777777777777766543 256677778888888888
Q ss_pred hHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 041741 455 NELAERVFHRIPE--L-DIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQI 531 (748)
Q Consensus 455 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 531 (748)
+++|...|+++.. | ++..|..+..++...|++++|...|+++.... +.+...+..+...+...|++++|...+..+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888887753 3 44568889999999999999999999998763 224456677888899999999999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 041741 532 EKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDIT 608 (748)
Q Consensus 532 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 608 (748)
.+.. +.+...+..+..++.+.|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 8874 44678899999999999999999999998763 467789999999999999999999999999863 345678
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHH
Q 041741 609 FVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCR 685 (748)
Q Consensus 609 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 685 (748)
+..+..++...|++++|+..++++.. ..|+ ...+..++.++.+.|++++|...++++. .++++..+..++..+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 99999999999999999999999853 3444 6788999999999999999999999885 5667889999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 686 LHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 686 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
..|++++|...++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=5.1e-25 Score=228.24 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=154.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCC---------chhHHHHHHHHHHhCCCCchHH
Q 041741 472 CWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSS---------SFQGRQVHAQIEKDGYVNDIFV 542 (748)
Q Consensus 472 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 542 (748)
.++.+|++|++.|+.++|+++|++|.+.|+.||..||+.||.+|+..+. .+.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4677788888888888888888888888888888888888888876654 4668888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 041741 543 GSALIEMYCKCGDIYGARQFFDMMH----GKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSH 618 (748)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 618 (748)
|+.+|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 8888888888888888888888876 378888888888888888888888888888888888888888888888888
Q ss_pred CCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHh
Q 041741 619 SGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGR 654 (748)
Q Consensus 619 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 654 (748)
.|++++|.+++++| ++.+..|+..||..++..+..
T Consensus 188 ~g~~d~A~~ll~~M-r~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRL-RDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHH-HHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHH-HHhCCCcCHHHHHHHHHHHhc
Confidence 88888888888888 677888888888888887765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=9.9e-26 Score=233.56 Aligned_cols=179 Identities=15% Similarity=0.150 Sum_probs=160.0
Q ss_pred hhhHHHHHhhcCCChhHHHHhhccCC----CCCchhHHHHHHHHHhcCC---------hhHHHHHHHHHHhCCCCCCcch
Q 041741 56 SWNAILSAQCKSDDLEFAYKLFDEMP----ERNVVSWNNLISALVRNGL---------EEKALSVYNKMSNEGFVPTHIT 122 (748)
Q Consensus 56 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~m~~~~~~p~~~~ 122 (748)
.++.+|.+|++.|++++|.++|++|. +||..+||+||.+|++.+. .+.|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 45666677777777777777777665 3677777777777766543 6789999999999999999999
Q ss_pred HHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCC----CCCeehHHHHHHHHHc
Q 041741 123 LASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMS----EPNEVTFTAMMSGLAK 198 (748)
Q Consensus 123 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~ 198 (748)
|+++|.+|++.|+++.|.++++.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999996 4999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhcc
Q 041741 199 TDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCARE 234 (748)
Q Consensus 199 ~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 234 (748)
.|++++|.++|++|++.|+.|+..||+.++..+...
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998765
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-22 Score=216.08 Aligned_cols=427 Identities=10% Similarity=-0.047 Sum_probs=296.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CCcchHHHHHHHHHc
Q 041741 305 SWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPS---PSVSSWNAMLSSYSQ 381 (748)
Q Consensus 305 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~ 381 (748)
.+......+.+.|++++|+..|+++.... |+..++..+..++...|++++|...|+.+.+ .+...+..+..++.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 34556667777888888888888887764 6777888888888888888888888877653 344677788888889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHH---HHHHHHHhcCChHHH
Q 041741 382 SENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVAS---GLIGIYSKCQRNELA 458 (748)
Q Consensus 382 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a 458 (748)
.|++++|...|+++...+ +++.......+..+........+.+.+..+...+..++..... ...............
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999998888764 3344444444433333222222222221111111000000000 000000011111111
Q ss_pred HHHHhhCC---------CC-CcchHHHHHHHHHh---CCCchHHHHHHHHHHH-----CCCCC--------CHHHHHHHH
Q 041741 459 ERVFHRIP---------EL-DIVCWNSMIAGLSL---NSLDIEAFMFFKQMRQ-----NEMYP--------TQFSFATVL 512 (748)
Q Consensus 459 ~~~~~~~~---------~~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~~p--------~~~~~~~l~ 512 (748)
...+.... .+ +...+......+.. .|++++|...|+++.. ....| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 11111111 11 12233334444443 7889999999999887 32122 345667778
Q ss_pred HhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhH
Q 041741 513 SSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDE 589 (748)
Q Consensus 513 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 589 (748)
..+...|+++.|...++.+.+.... ...+..+..++...|++++|...++.+.+ .+...+..++..+...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8888999999999999998887644 78888889999999999999999987654 466788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 590 AVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 590 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
|...++++.+.. +.+...+..+...+...|++++|+..++++... .+.+...+..++.++.+.|++++|...++++.
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999863 345577888899999999999999999988533 22346778889999999999999999998874
Q ss_pred ----CCCC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 670 ----CKDD----PVIWEVLLSSCRL---HANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 670 ----~~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
..+. ...+..++..+.. .|++++|...++++++.+|+++.++..++.+|...|++++|..+++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 1122 3378888888888 8999999999999999999999999999999999999999999999887644
Q ss_pred C
Q 041741 739 I 739 (748)
Q Consensus 739 ~ 739 (748)
+
T Consensus 480 ~ 480 (514)
T 2gw1_A 480 R 480 (514)
T ss_dssp S
T ss_pred c
Confidence 3
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.5e-22 Score=212.63 Aligned_cols=438 Identities=11% Similarity=-0.045 Sum_probs=314.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhccCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 041741 273 HLSNSLLDMYAKNGDMDSAEVIFSNLPE--RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVR 350 (748)
Q Consensus 273 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 350 (748)
..+......+...|++++|...|+.+.+ |+..+|..+..++...|++++|+..++++.+.+ +.+...+..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4556677888999999999999998764 777889999999999999999999999999865 3355788888999999
Q ss_pred cCCHHHHHHHhccCCC---CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHH
Q 041741 351 SGDIKTGREMFDSMPS---PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVH 427 (748)
Q Consensus 351 ~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 427 (748)
.|++++|...|+.+.. ++......++..+........+.+.+..+...+..|+......-...............+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 9999999999987754 3334444444444443333333333322222211111111100000000000001111111
Q ss_pred HHHHhhcC---------CchhHHHHHHHHHHHh---cCChHHHHHHHhhCCC-----C------------CcchHHHHHH
Q 041741 428 AASLKTAS---------HIDNYVASGLIGIYSK---CQRNELAERVFHRIPE-----L------------DIVCWNSMIA 478 (748)
Q Consensus 428 ~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~------------~~~~~~~li~ 478 (748)
..+..... +.+...+......+.. .|++++|...++++.+ . +...+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 11100000 1123333334444443 6777777777766543 1 2345777888
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 041741 479 GLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYG 558 (748)
Q Consensus 479 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (748)
.+...|++++|...|+++.... |+...+..+...+...|+++.|...++.+.+.. +.+...+..+..++...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 8999999999999999998764 337788888999999999999999999988764 3467788899999999999999
Q ss_pred HHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhh
Q 041741 559 ARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLD 635 (748)
Q Consensus 559 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 635 (748)
|...++.+.+ .+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998752 467788999999999999999999999999863 445678889999999999999999999998644
Q ss_pred hCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041741 636 HGVEPI----LDHYTCMIDCLGR---AGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 636 ~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 706 (748)
..-.++ ...+..++.++.. .|++++|...++++. .+.++..+..++..+...|++++|...++++++++|+
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 333333 3478899999999 999999999999885 4456788889999999999999999999999999998
Q ss_pred CCcchHHHh
Q 041741 707 NSAPYSLLA 715 (748)
Q Consensus 707 ~~~~~~~l~ 715 (748)
++..+..+.
T Consensus 482 ~~~~~~~~~ 490 (514)
T 2gw1_A 482 MEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 887776663
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=7e-21 Score=199.51 Aligned_cols=343 Identities=11% Similarity=0.018 Sum_probs=234.9
Q ss_pred CcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 041741 368 SVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIG 447 (748)
Q Consensus 368 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 447 (748)
+...+..+...+.+.|++++|+.+|+++.+. .+.+...+..+..++...|+++.|...+..+++..+. +...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 3445667777788888888888888887765 2334566666667777777777777777777665533 2344444555
Q ss_pred HHHhcCChHHHHHHHhhCCCCCc------chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCc
Q 041741 448 IYSKCQRNELAERVFHRIPELDI------VCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSS 521 (748)
Q Consensus 448 ~~~~~~~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 521 (748)
+|...|++++|...|+++.+.++ ..+..++..+.. ..+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCH
Confidence 55555555555555554443222 222222222000 0111223345666777
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041741 522 FQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMI 598 (748)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 598 (748)
+.|...++.+.+.. +.+...+..+..+|.+.|++++|.+.|+.+.+ .+..+|..++.++...|++++|+..++++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777776654 34566777778888888888888888877653 467788888888888888888888888888
Q ss_pred HcCCCCCHHHHHHH------------HHHhcCCCChHHHHHHHHHhhhhhCCCCC-----hhHHHHHHHHHHhcCChHHH
Q 041741 599 ASGVKPDDITFVAI------------LTACSHSGLVDVGVEIFNSMQLDHGVEPI-----LDHYTCMIDCLGRAGHFHEA 661 (748)
Q Consensus 599 ~~~~~p~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A 661 (748)
+.. +.+...+..+ +..|...|++++|+..|+++.. ..|+ ...+..++.++.+.|++++|
T Consensus 239 ~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 239 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 752 2333444444 7788888999999999998853 2344 34677888999999999999
Q ss_pred HHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHh------------HHHhhcC-----
Q 041741 662 EMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLA------------NIYSSLG----- 722 (748)
Q Consensus 662 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g----- 722 (748)
...++++. .+.++..|..++..+...|++++|...++++++++|+++.++..++ ..|...|
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 99998874 4456888888999999999999999999999999999988888888 5566666
Q ss_pred ChHHHHHHHHH-HHhcCCC
Q 041741 723 RWDDLRAVREL-MSENCIV 740 (748)
Q Consensus 723 ~~~~A~~~~~~-~~~~~~~ 740 (748)
+.+++.+.|++ ..+..+.
T Consensus 395 ~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp CTTHHHHHHHHHHHHSCGG
T ss_pred CHHHHHHHHHHHHHHhCCC
Confidence 55677777775 3444443
No 10
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=4.3e-18 Score=186.01 Aligned_cols=668 Identities=11% Similarity=0.102 Sum_probs=356.7
Q ss_pred HhCCCCCcchhhHHHHHHHccCCchhhhhhhhcCCC--CchhhhhHHHHHhhcCCChhHHHHhhccCCCC----------
Q 041741 16 RNGLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMPH--KDIYSWNAILSAQCKSDDLEFAYKLFDEMPER---------- 83 (748)
Q Consensus 16 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------- 83 (748)
+-|+.|| |..|++.+.+. +++.|.++-..+.+ +.....+.++..+...+.+.++..++-+..+.
T Consensus 507 ~~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQT 582 (1630)
T 1xi4_A 507 KVGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQT 582 (1630)
T ss_pred ccCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCCCCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhH
Confidence 3455444 55677777655 47777776666554 23455667788888888888777766444321
Q ss_pred --------------------Cch---hHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCcchHHHHHHHhccccCcHH
Q 041741 84 --------------------NVV---SWNNLISALVRNGLEEKALSVYNKMSN--EGFVPTHITLASVFKASTALLDVEH 138 (748)
Q Consensus 84 --------------------~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~ 138 (748)
+.. -+..+...|.++|-+.+|++.|..+.. +-+..+...=.-.+..+...-..+.
T Consensus 583 rlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~l~~~~ 662 (1630)
T 1xi4_A 583 RLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVED 662 (1630)
T ss_pred HHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhcCCHHH
Confidence 111 256778888999999999998876633 1111110111112233333356788
Q ss_pred HhHHHHHHHHHCCCCcHhH-------------HHHHHHHHHhcCChhhHHHHHhcCCC--CCeehHHHHHHHHHcCCCHH
Q 041741 139 GRRCHGLVIKIGLDKNIYV-------------ANALLSLYAKCGWTKHAVPVFEEMSE--PNEVTFTAMMSGLAKTDRVV 203 (748)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 203 (748)
+.+++..|...+++-+..+ -..+|+.+.+.+.++.-.-.+..+.. .|+......|.+.++.|+..
T Consensus 663 s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~ 742 (1630)
T 1xi4_A 663 SLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIK 742 (1630)
T ss_pred HHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCch
Confidence 8999999988765433322 23444444444444444444444332 57777888999999999888
Q ss_pred HHHHHHHH------------HHHcCCCCCcccHHHHHHHHhccCCCCCcchhccccccccc---------ccchhHHHHH
Q 041741 204 EALEMFRL------------MIRKAVSIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSR---------NVHGQQVHCL 262 (748)
Q Consensus 204 ~a~~~~~~------------m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 262 (748)
+..++.++ +++.. -||. ..+|..|-+.+...+...++-..+...- ..+.-++...
T Consensus 743 everi~res~~y~~e~vk~flk~~k-l~d~---~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~ 818 (1630)
T 1xi4_A 743 EVERICRESNCYDPERVKNFLKEAK-LTDQ---LPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGG 818 (1630)
T ss_pred hhhHHhccCCCCCHHHHHHHHhhCC-CCCC---CCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhh
Confidence 77766544 11111 1222 1222223222211111111111000000 0000000000
Q ss_pred HHHhcCCCchHHHHHHHH-------------HHHhcCChhHHHHHhccCC---CCCcccHHHHHHHHHhcC-ChhHHHH-
Q 041741 263 TIKLGFEADLHLSNSLLD-------------MYAKNGDMDSAEVIFSNLP---ERSVVSWNVMIAGYGQKY-QSTKAIE- 324 (748)
Q Consensus 263 ~~~~~~~~~~~~~~~li~-------------~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~a~~- 324 (748)
+. .+.-+......|+. ..-+.++..--..+++.-. ..++.++|++.+.|...+ +++.-+.
T Consensus 819 ll--d~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g~~~~~~hnalakiyid~n~npe~fL~~ 896 (1630)
T 1xi4_A 819 LL--DVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRE 896 (1630)
T ss_pred hh--cCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCHHHHhhc
Confidence 00 11112222222222 2222222222222222221 146678999999888544 3333221
Q ss_pred --------HHHHHHhcCC-------------------CCChhhHHHHHHHHHhcCCHHHHHHHh-----------ccC--
Q 041741 325 --------LLQRMKSCGF-------------------EPDEVTSINMLVACVRSGDIKTGREMF-----------DSM-- 364 (748)
Q Consensus 325 --------~~~~m~~~g~-------------------~p~~~~~~~ll~~~~~~~~~~~a~~~~-----------~~~-- 364 (748)
+=+-..+... ......|....+-+.+..+.+-=-.++ +..
T Consensus 897 n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a 976 (1630)
T 1xi4_A 897 NPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQ 976 (1630)
T ss_pred cCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 1011111100 001111222222222222211111111 100
Q ss_pred ---C-CCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHh------------------------
Q 041741 365 ---P-SPSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGV--KPDRTTLAIILSSC------------------------ 414 (748)
Q Consensus 365 ---~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~------------------------ 414 (748)
+ ..++.--...+..|...|.+.+|++++++..-.+- .-+...-+.++.+.
T Consensus 977 ~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA 1056 (1630)
T 1xi4_A 977 TALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIA 1056 (1630)
T ss_pred hhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHH
Confidence 0 13334445667778888888888888888874311 01112222233333
Q ss_pred ---hccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHH
Q 041741 415 ---AAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFM 491 (748)
Q Consensus 415 ---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 491 (748)
...|.+++|..+++.... ... ++-..+...+++++|.++.+++. ++.+|..+..++...|++++|++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~-----~~~---A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV-----NTS---AVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC-----HHH---HHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence 333444444444444210 000 01111224455555555555442 34566677777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCH
Q 041741 492 FFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNT 571 (748)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 571 (748)
.|.+. -+...|..++.+|.+.|+++.+.+++....+.. +++.+.+.++.+|.+.+++++...+. ..++.
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ 1195 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNN 1195 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCH
Confidence 77442 355666677777777777777777777666654 22222334777777777777544432 34555
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHH
Q 041741 572 VTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDC 651 (748)
Q Consensus 572 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 651 (748)
..|..++..|...|++++|..+|... ..|..+...+.+.|++++|++.+++. .+..+|..+..+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHH
Confidence 66666777777777777777777764 25777777777777777777777655 234667777777
Q ss_pred HHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc--CChHHHHH
Q 041741 652 LGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSL--GRWDDLRA 729 (748)
Q Consensus 652 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~ 729 (748)
|...|++..|......+ ..++..+..++..|...|.+++|+.++++++.++|.+...+..|+.+|.+. ++..++.+
T Consensus 1260 cve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 77777777777766542 345666667778888888888888888888888887777777777776554 56666666
Q ss_pred HHH
Q 041741 730 VRE 732 (748)
Q Consensus 730 ~~~ 732 (748)
+|.
T Consensus 1338 ~f~ 1340 (1630)
T 1xi4_A 1338 LFW 1340 (1630)
T ss_pred HHH
Confidence 655
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.4e-20 Score=202.17 Aligned_cols=425 Identities=13% Similarity=0.017 Sum_probs=205.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 041741 272 LHLSNSLLDMYAKNGDMDSAEVIFSNLPE---RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVAC 348 (748)
Q Consensus 272 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 348 (748)
...+..+...+.+.|++++|...|+.+.+ .++.+|..+..++...|++++|++.++++.+.+ +.+...+..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 34566667777777777777777776543 344567777777777777777777777776653 22455566666666
Q ss_pred HhcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCCCHhhHHHHHHHhhccCChHH
Q 041741 349 VRSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREMQFR------GVKPDRTTLAIILSSCAAMGILES 422 (748)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~ 422 (748)
...|++++|...|+.+ ..++......+..+...+....|...++++... ...|+...+.. +....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChHH
Confidence 7777777777766532 222222222333444444556666666666432 12233322222 222222222
Q ss_pred HHHHHHHHHhhcCCc-hhHHHHHHHHHHHhc--------CChHHHHHHHhhCCCCCcc----------hHHHHHHHHHhC
Q 041741 423 GKQVHAASLKTASHI-DNYVASGLIGIYSKC--------QRNELAERVFHRIPELDIV----------CWNSMIAGLSLN 483 (748)
Q Consensus 423 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~----------~~~~li~~~~~~ 483 (748)
+...+..... ..+ .......+...+... +++++|...++++.+.++. ++..+...+...
T Consensus 179 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 2211111100 001 111222232222221 2455555555555432221 233444455555
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHh
Q 041741 484 SLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFF 563 (748)
Q Consensus 484 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 563 (748)
|++++|...|++.... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+..++...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5566666666555543 2334555555555555566666655555555543 223445555555555555555555555
Q ss_pred hhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC
Q 041741 564 DMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP 640 (748)
Q Consensus 564 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 640 (748)
+++.+ .+...+..+..++...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.......+
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 54432 234455555555555555555555555555542 22334455555555555555555555555432211111
Q ss_pred C----hhHHHHHHHHHHhc----------CChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041741 641 I----LDHYTCMIDCLGRA----------GHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLD 704 (748)
Q Consensus 641 ~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 704 (748)
+ ...+...+.++.+. |++++|...++++. .+.++..+..++..+...|++++|...+++++++.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1 11223334444444 55555555555543 22334455555555555555555555555555555
Q ss_pred CCCC
Q 041741 705 PKNS 708 (748)
Q Consensus 705 p~~~ 708 (748)
|+++
T Consensus 493 ~~~~ 496 (537)
T 3fp2_A 493 RTMD 496 (537)
T ss_dssp --CH
T ss_pred CCcH
Confidence 5443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.1e-19 Score=195.08 Aligned_cols=428 Identities=9% Similarity=-0.028 Sum_probs=294.0
Q ss_pred HhHHHHHHHHHHhcCChhhHHHHHhcCCC---CCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 041741 155 IYVANALLSLYAKCGWTKHAVPVFEEMSE---PNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVC 231 (748)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 231 (748)
...+..+...+.+.|++++|.+.|+++.+ .+...|..+...+.+.|++++|+..++++.+.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------- 89 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--------------- 89 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Confidence 34566677777788888888888877653 355677777788888888888888888776531
Q ss_pred hccCCCCCcchhcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHH
Q 041741 232 AREGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPERSVVSWNVMIA 311 (748)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 311 (748)
+.+..++..+...+...|++++|...|+.+ ..+.......+.
T Consensus 90 -------------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~ 131 (537)
T 3fp2_A 90 -------------------------------------PDHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIE 131 (537)
T ss_dssp -------------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------
T ss_pred -------------------------------------CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHH
Confidence 223455666777777888888888887533 222222233344
Q ss_pred HHHhcCChhHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCCcc---hHHHHHHHHHcc----
Q 041741 312 GYGQKYQSTKAIELLQRMKSCG--FEPDEVTSINMLVACVRSGDIKTGREMFDSMPSPSVS---SWNAMLSSYSQS---- 382 (748)
Q Consensus 312 ~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~---- 382 (748)
.+...+...+++..++.+.... ..+........+..+....+.+.+...+......+.. ....+...+...
T Consensus 132 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (537)
T 3fp2_A 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhh
Confidence 4555556677888888886531 1111112233444555677778888888777664443 333333333222
Q ss_pred ----CCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHH
Q 041741 383 ----ENHKEAIKLFREMQFRGVKPDR-TTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNEL 457 (748)
Q Consensus 383 ----~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 457 (748)
|++++|..+++++.+. .|+. ..+..+ ...+..+...+...|++++
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~----------------------------~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSA--NTVDDPLRENA----------------------------ALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CCCHHHHHHH----------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--CCCcchhhHHH----------------------------HHHHHHHHHHHHhcccHHH
Confidence 3677777777777654 3332 111111 1123344455666677777
Q ss_pred HHHHHhhCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhC
Q 041741 458 AERVFHRIP--ELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDG 535 (748)
Q Consensus 458 a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 535 (748)
|...++++. .|+...+..+...+...|++++|...++++.... +.+..++..+...+...|+++.|...++.+.+..
T Consensus 262 A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 262 AQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 777766665 2445567788889999999999999999998764 3467788899999999999999999999999875
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-----CCHH
Q 041741 536 YVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVK-----PDDI 607 (748)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~ 607 (748)
+.+...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+.... ....
T Consensus 341 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 -PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 33567888999999999999999999998763 46778999999999999999999999998875311 1112
Q ss_pred HHHHHHHHhcCC----------CChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 608 TFVAILTACSHS----------GLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 608 ~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
.+......+... |++++|+..++++... .+.+...+..++.+|.+.|++++|...+++..
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 244455667777 9999999999998533 23346778899999999999999999999885
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=5.3e-17 Score=177.56 Aligned_cols=667 Identities=12% Similarity=0.098 Sum_probs=422.1
Q ss_pred hhhHHHHHHHHhCCCCCcchhhHHHHHHHccCCchhhhhhhhcCCC-----Cchhhh-hHHHHHhhcCCChhHHHHhhcc
Q 041741 6 AGKLLHAHILRNGLFDDTFLCNRLIELYSKCNNTHSAQHLFDKMPH-----KDIYSW-NAILSAQCKSDDLEFAYKLFDE 79 (748)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~-~~l~~~~~~~~~~~~a~~~~~~ 79 (748)
.+-|+=+.|+..+.- +.+.+..+...|-+.|-+..|++.|..+.. .+.... ...+-.|.-.=+++.+++.+..
T Consensus 591 ~~pqvadail~~~~f-thyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~l~~~~s~~~l~~ 669 (1630)
T 1xi4_A 591 HAPQVADAILGNQMF-THYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRA 669 (1630)
T ss_pred cchhHHHHHHhcCcc-ccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 355667777777765 788889999999999999999999987643 111111 1122222223456777777777
Q ss_pred CCCCC-----------------chhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHH
Q 041741 80 MPERN-----------------VVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRC 142 (748)
Q Consensus 80 ~~~~~-----------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 142 (748)
|...| ...-..+|..+-+.+.++...-++..... ..-|+....-.+.++++.|++.+.+++
T Consensus 670 ~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~--~s~d~~vhfkyi~aa~~~~q~~everi 747 (1630)
T 1xi4_A 670 MLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN--FSQDPDVHFKYIQAACKTGQIKEVERI 747 (1630)
T ss_pred HHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhcc--ccCChHHHHHHHHHHHHhCCchhhhHH
Confidence 66421 11234566666666666666666555543 456777888889999999998887765
Q ss_pred HHH------------HHHHCCCCcH----h------HHHHHHHHHHhcCChhhHHHHH-hcCCC---C-----------C
Q 041741 143 HGL------------VIKIGLDKNI----Y------VANALLSLYAKCGWTKHAVPVF-EEMSE---P-----------N 185 (748)
Q Consensus 143 ~~~------------~~~~~~~~~~----~------~~~~li~~~~~~g~~~~a~~~~-~~~~~---~-----------~ 185 (748)
..+ +++..+ ||. . -...|+.-+.+.+.. +-++++ .++-. | +
T Consensus 748 ~res~~y~~e~vk~flk~~kl-~d~~pli~vCdr~~~v~~l~~yLy~n~~~-~~ie~yv~~vnp~~~p~Vvg~lld~d~~ 825 (1630)
T 1xi4_A 748 CRESNCYDPERVKNFLKEAKL-TDQLPLIIVCDRFDFVHDLVLYLYRNNLQ-KYIEIYVQKVNPSRLPVVIGGLLDVDCS 825 (1630)
T ss_pred hccCCCCCHHHHHHHHhhCCC-CCCCCceeeccccccHHHHHHHHHhcCch-hHHHHHHhccCCcccchhhhhhhcCCCC
Confidence 432 222221 111 0 011122211122222 222222 11110 1 1
Q ss_pred eeh-------------HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCCcchhccccccccc
Q 041741 186 EVT-------------FTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSR 252 (748)
Q Consensus 186 ~~~-------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 252 (748)
... -..|+...-+.++..--+..++.-...| ..++.+++++...+...+..++ .++....-.+.
T Consensus 826 e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe--~fL~~n~~yd~ 902 (1630)
T 1xi4_A 826 EDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPE--RFLRENPYYDS 902 (1630)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHH--HHhhccCcccH
Confidence 111 2222333333333333334444444444 4577889999998887753322 22222111111
Q ss_pred ccchhHHHHHHHHh-----------cC--------CCchHHHHHHHHHHHhcCChhHHHH-----------Hhcc-----
Q 041741 253 NVHGQQVHCLTIKL-----------GF--------EADLHLSNSLLDMYAKNGDMDSAEV-----------IFSN----- 297 (748)
Q Consensus 253 ~~~~~~~~~~~~~~-----------~~--------~~~~~~~~~li~~~~~~~~~~~a~~-----------~~~~----- 297 (748)
.-+-+...+. |. ...-..|....+-+.+..+.+-=.. +.++
T Consensus 903 ----~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~a 978 (1630)
T 1xi4_A 903 ----RVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTA 978 (1630)
T ss_pred ----HHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhh
Confidence 0011111111 10 0001112222222222222111111 1111
Q ss_pred CCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCCcchHHH
Q 041741 298 LPE-RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGF--EPDEVTSINMLVACVRSGDIKTGREMFDSMPSPSVSSWNA 374 (748)
Q Consensus 298 ~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 374 (748)
+++ .++.--....++|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..+....+...+ ...
T Consensus 979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~e 1054 (1630)
T 1xi4_A 979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APD 1054 (1630)
T ss_pred cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHH
Confidence 000 1333345667788889999999999998884321 11223344455555555 5555555555544222 344
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 041741 375 MLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQR 454 (748)
Q Consensus 375 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 454 (748)
+...+...|.+++|..+|++.. -.......++ ...+++++|.++.+.. .++.+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 6778888999999999999852 1111122222 2667888888887755 257888899999999999
Q ss_pred hHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHh
Q 041741 455 NELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKD 534 (748)
Q Consensus 455 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 534 (748)
+++|...|.+. .|...|..++.++.+.|++++|++.|...++.. +++...+.++.+|++.++++....+. +
T Consensus 1121 ~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 99999999775 577788899999999999999999999887764 33333345888999998887544443 1
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041741 535 GYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILT 614 (748)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 614 (748)
.++...+..+...|...|++++|..+|..+ ..|..++.++.+.|+++.|++.+++. .+..+|..+..
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 345566777999999999999999999985 58999999999999999999999986 45588999999
Q ss_pred HhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHh--cCCH
Q 041741 615 ACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSSCRL--HANV 690 (748)
Q Consensus 615 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~--~~~~ 690 (748)
+|...|++..|...... +..+.+.+..++..|.+.|.+++|+.+++... ..+ ....+..+...+.+ .++.
T Consensus 1259 acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH
Confidence 99999999999887543 34556678899999999999999999998875 233 34556555555544 4567
Q ss_pred HHHHHHHHHHHhcCC-----CCCcchHHHhHHHhhcCChHHHHHH
Q 041741 691 RLAKRAAEELFRLDP-----KNSAPYSLLANIYSSLGRWDDLRAV 730 (748)
Q Consensus 691 ~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 730 (748)
.++.+.|..-+.+.| +++..+..+.-+|.+.|+++.|...
T Consensus 1333 mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1333 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 777888887777767 6888899999999999999999854
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=4.3e-19 Score=185.83 Aligned_cols=363 Identities=9% Similarity=-0.032 Sum_probs=215.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CCcchHHHHHHH
Q 041741 302 SVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPS---PSVSSWNAMLSS 378 (748)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~ 378 (748)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|+.+.+ .+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44578888888899999999999999888753 33566677777777777777777777776653 345566677777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHh----hHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 041741 379 YSQSENHKEAIKLFREMQFRGVKPDRT----TLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQR 454 (748)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 454 (748)
+.+.|++++|...++++.+. .|+.. .+..+...+.. ..+..+...+...|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 77777777777777777654 34332 22222221110 111222333444555
Q ss_pred hHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHh
Q 041741 455 NELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKD 534 (748)
Q Consensus 455 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 534 (748)
+++|...|+ ++.... +.+...+..+...+...|+++.|..+++.+.+.
T Consensus 159 ~~~A~~~~~-------------------------------~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 159 YTAAIAFLD-------------------------------KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL 206 (450)
T ss_dssp HHHHHHHHH-------------------------------HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------------HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 555555554 444321 223344444444444455555555555444443
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-CHHHHHHH------------HHHHHHcCChhHHHHHHHHHHH
Q 041741 535 GYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--K-NTVTWNEM------------IHGYAQNGYGDEAVRLYKDMIA 599 (748)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~ 599 (748)
. +.++.++..+..+|...|++++|...|+.+.+ | +...+..+ +..+...|++++|+.+|+++.+
T Consensus 207 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 207 K-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285 (450)
T ss_dssp H-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 22344555555555555555555555554432 2 22233222 6777777888888888888777
Q ss_pred cCCCCC-----HHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-
Q 041741 600 SGVKPD-----DITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD- 672 (748)
Q Consensus 600 ~~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~- 672 (748)
. .|+ ...+..+...+...|++++|+..++++... .+.+...+..++.+|...|++++|...++++. ..|
T Consensus 286 ~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 286 T--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp H--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred c--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 4 344 235667777778888888888888777422 12246677778888888888888888877764 334
Q ss_pred CHhHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHhcCCCCCc----------chHHHhHHHhhcCCh
Q 041741 673 DPVIWEVLLSS------------CRLHA-----NVRLAKRAAEE-LFRLDPKNSA----------PYSLLANIYSSLGRW 724 (748)
Q Consensus 673 ~~~~~~~l~~~------------~~~~~-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~ 724 (748)
++..+..+... +...| +.+++.+.+++ +++..|++.. .+..++.+|...||.
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 45555555422 33333 56778888886 7888887543 234455555555554
Q ss_pred HHH
Q 041741 725 DDL 727 (748)
Q Consensus 725 ~~A 727 (748)
+++
T Consensus 442 ~~r 444 (450)
T 2y4t_A 442 EMR 444 (450)
T ss_dssp GGC
T ss_pred HHH
Confidence 443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=6.1e-18 Score=171.16 Aligned_cols=322 Identities=11% Similarity=-0.001 Sum_probs=192.6
Q ss_pred cchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHH
Q 041741 369 VSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGI 448 (748)
Q Consensus 369 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 448 (748)
+..+..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++.|...++.+.+..+. +...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3445666777788888888888888877652 234556666666677777777777777776665432 23444455555
Q ss_pred HHhcCChHHHHHHHhhCCCCCc---ch---HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCch
Q 041741 449 YSKCQRNELAERVFHRIPELDI---VC---WNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSF 522 (748)
Q Consensus 449 ~~~~~~~~~a~~~~~~~~~~~~---~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 522 (748)
+...|++++|...++++.+.++ .. +..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 5555555555555554443222 11 111100000 001112234555666666
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041741 523 QGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIA 599 (748)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 599 (748)
.|...++.+.+.. +.+...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666666553 33556666677777777777777777776543 3566777777777777777777777777776
Q ss_pred cCCCCCHHHHH------------HHHHHhcCCCChHHHHHHHHHhhhhhCCCCCh-----hHHHHHHHHHHhcCChHHHH
Q 041741 600 SGVKPDDITFV------------AILTACSHSGLVDVGVEIFNSMQLDHGVEPIL-----DHYTCMIDCLGRAGHFHEAE 662 (748)
Q Consensus 600 ~~~~p~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~ 662 (748)
.. +.+...+. .+...+...|++++|...++++... .|+. ..+..++.++...|++++|.
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 42 22223222 2244566677777777777766432 2321 22445666777777777777
Q ss_pred HHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhh
Q 041741 663 MLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSS 720 (748)
Q Consensus 663 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 720 (748)
..+++.. .+.++..+..++..+...|++++|...++++++++|+++.+...++.++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 7776664 333566666777777777777777777777777777776666666655543
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=1.1e-17 Score=169.39 Aligned_cols=305 Identities=12% Similarity=0.011 Sum_probs=221.4
Q ss_pred HhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHH
Q 041741 404 RTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPE---LDIVCWNSMIAGL 480 (748)
Q Consensus 404 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 480 (748)
...+..+...+...|+++.|...+..+++..+. +...+..+..++...|++++|...++++.+ .+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 344555666677777777777777777665443 345555666666666666666666665542 2334555566666
Q ss_pred HhCCCchHHHHHHHHHHHCCCCC---CH-HHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 041741 481 SLNSLDIEAFMFFKQMRQNEMYP---TQ-FSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDI 556 (748)
Q Consensus 481 ~~~~~~~~a~~~~~~m~~~~~~p---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (748)
...|++++|...|++.... .| +. ..+..+.... ....+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCH
Confidence 6666666666666666543 23 11 1111111100 011123346788899999
Q ss_pred HHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhh
Q 041741 557 YGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQ 633 (748)
Q Consensus 557 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 633 (748)
++|.+.++.+.+ .+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998763 577889999999999999999999999999863 5567889999999999999999999999985
Q ss_pred hhhCCCCC-hhHHH------------HHHHHHHhcCChHHHHHHHhhCC-CCC-CHh----HHHHHHHHHHhcCCHHHHH
Q 041741 634 LDHGVEPI-LDHYT------------CMIDCLGRAGHFHEAEMLIDEMP-CKD-DPV----IWEVLLSSCRLHANVRLAK 694 (748)
Q Consensus 634 ~~~~~~~~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~----~~~~l~~~~~~~~~~~~a~ 694 (748)
.. .|+ ...+. .++..+.+.|++++|...++++. ..| ++. .+..+...+...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 33 344 22222 33778999999999999999875 233 343 3445677899999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 695 RAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 695 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
..++++++.+|+++.++..++.+|...|++++|...++++.+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999987654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=3e-17 Score=163.82 Aligned_cols=250 Identities=10% Similarity=-0.018 Sum_probs=177.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCC-CchhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 041741 473 WNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLS-SSFQGRQVHAQIEKDGYVNDIFVGSALIEMYC 551 (748)
Q Consensus 473 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 551 (748)
+..++..+...|++++|...++++.... +.+...+..+...+...| +++.|...++.+.+.. +.+...+..+..++.
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFA 136 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3334444445555555555555554431 223344445555555555 5555555555555433 224556667777788
Q ss_pred hcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHH
Q 041741 552 KCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEI 628 (748)
Q Consensus 552 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 628 (748)
..|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 88888888888877653 345667778888888899999999998888863 45567788888888889999999998
Q ss_pred HHHhhhhhC-------CCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 041741 629 FNSMQLDHG-------VEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEE 699 (748)
Q Consensus 629 ~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 699 (748)
++++..... .+.....+..++.++...|++++|...+++.. .+.++..+..+...+...|++++|...+++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 888754321 13335678889999999999999999998875 445678888888899999999999999999
Q ss_pred HHhcCCCCCcchHHHhHHH-hhcCChH
Q 041741 700 LFRLDPKNSAPYSLLANIY-SSLGRWD 725 (748)
Q Consensus 700 ~~~~~p~~~~~~~~l~~~~-~~~g~~~ 725 (748)
+++++|+++.++..++.++ ...|+.+
T Consensus 296 al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 296 ALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999988 5666644
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1.7e-15 Score=159.76 Aligned_cols=383 Identities=10% Similarity=0.009 Sum_probs=252.1
Q ss_pred CcccHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCCcchHHHHHH
Q 041741 302 SVVSWNVMIAGYGQ----KYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPSPSVSSWNAMLS 377 (748)
Q Consensus 302 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~ 377 (748)
++.++..+...|.. .+++++|+..|++..+.| +...+..+-..|...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g-------------------------- 88 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNG-------------------------- 88 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT--------------------------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC--------------------------
Confidence 44555555555555 566666666666665543 233444444444440
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhc----cCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHh--
Q 041741 378 SYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAA----MGILESGKQVHAASLKTASHIDNYVASGLIGIYSK-- 451 (748)
Q Consensus 378 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 451 (748)
....+++++|.+++++..+.| ++..+..+-..+.. .+++++|...++...+.+ +......+..+|..
T Consensus 89 -~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 161 (490)
T 2xm6_A 89 -EGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGD 161 (490)
T ss_dssp -SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred -CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 000444444444444444432 22333333333333 344555555555444443 23334444455544
Q ss_pred --cCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcC----CCC
Q 041741 452 --CQRNELAERVFHRIPE-LDIVCWNSMIAGLSL----NSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAK----LSS 520 (748)
Q Consensus 452 --~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~ 520 (748)
.++.++|...|++..+ .++..+..+...|.. .++.++|+..|++..+.| +...+..+...+.. .++
T Consensus 162 g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 162 GVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 5556666666655443 244556666666666 677888888888877764 34455555555543 678
Q ss_pred chhHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHHHHhhhcCC-CCHHHHHHHHHHHHHc-----CChhHH
Q 041741 521 SFQGRQVHAQIEKDGYVNDIFVGSALIEMYCK----CGDIYGARQFFDMMHG-KNTVTWNEMIHGYAQN-----GYGDEA 590 (748)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a 590 (748)
+++|..+++...+.+ ++..+..+..+|.. .+++++|.+.|+...+ .++..+..+...|... +++++|
T Consensus 239 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 888888888877654 45566667777777 7899999999988764 5677888888888887 899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcCCC---ChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHh----cCChHHHHH
Q 041741 591 VRLYKDMIASGVKPDDITFVAILTACSHSG---LVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGR----AGHFHEAEM 663 (748)
Q Consensus 591 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 663 (748)
+..+++..+.| +...+..+...|...| ++++|+..|++.. +. .+...+..++.+|.. .+++++|..
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~-~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA-AK---GEKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999865 3455666776666545 8899999999884 32 456778889999988 899999999
Q ss_pred HHhhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---CCcchHHHhHHHhhcCChHH--HHHHHHH
Q 041741 664 LIDEMPCKDDPVIWEVLLSSCRL----HANVRLAKRAAEELFRLDPK---NSAPYSLLANIYSSLGRWDD--LRAVREL 733 (748)
Q Consensus 664 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~--A~~~~~~ 733 (748)
.+++.....++..+..+...+.. .+|+++|...++++.+.+|+ ++.+...++.++....+..+ |.+++++
T Consensus 389 ~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~ 467 (490)
T 2xm6_A 389 WMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEK 467 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Confidence 99988645578888888888887 78999999999999999954 77888888888765433222 4444443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=6.3e-17 Score=161.54 Aligned_cols=263 Identities=13% Similarity=0.047 Sum_probs=225.4
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHH
Q 041741 468 LDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALI 547 (748)
Q Consensus 468 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (748)
.++..+..+...+...|++++|+.+|+++.... +.+...+..++..+...|+++.|..++..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 356677788888899999999999999998763 3344556667788889999999999999998875 44677888899
Q ss_pred HHHHhcC-CHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChH
Q 041741 548 EMYCKCG-DIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVD 623 (748)
Q Consensus 548 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 623 (748)
..+...| ++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 357789999999999999999999999999864 344567777999999999999
Q ss_pred HHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCC--C---------CCCHhHHHHHHHHHHhcCCHH
Q 041741 624 VGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLIDEMP--C---------KDDPVIWEVLLSSCRLHANVR 691 (748)
Q Consensus 624 ~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~---------~~~~~~~~~l~~~~~~~~~~~ 691 (748)
+|...++++. ...| +...+..++.++...|++++|...++++. . +..+..+..++..+...|+++
T Consensus 177 ~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999985 3334 46788899999999999999999998773 1 334678889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 692 LAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 692 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
+|...++++++..|+++.++..++.+|...|++++|.++++++.+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999997543
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=9.6e-17 Score=157.55 Aligned_cols=346 Identities=11% Similarity=0.060 Sum_probs=149.5
Q ss_pred HccCCchhhhhhhhcCCCCchhhhhHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041741 34 SKCNNTHSAQHLFDKMPHKDIYSWNAILSAQCKSDDLEFAYKLFDEMPERNVVSWNNLISALVRNGLEEKALSVYNKMSN 113 (748)
Q Consensus 34 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 113 (748)
-+.|++++|..+++++.+|+ +|..++.++.+.|++++|++.|.+. +|...|..++.++...|++++|+.+++..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 37788999999999996654 8999999999999999999999764 5667899999999999999999998877776
Q ss_pred CCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHH
Q 041741 114 EGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMM 193 (748)
Q Consensus 114 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 193 (748)
. .+++.+.+.++.++.+.|+++++.+++. .|+..+|..+...|...|++++|...|..+ ..|..++
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 4 4557888899999999999999888875 366779999999999999999999999977 4799999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCCcchhcccccccccccchhHHHHHHHHhcCCCchH
Q 041741 194 SGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADLH 273 (748)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (748)
..+.+.|++++|++.++.+. ++.
T Consensus 156 ~~L~~Lg~yq~AVea~~KA~---------------------------------------------------------~~~ 178 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKAN---------------------------------------------------------STR 178 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHHT---------------------------------------------------------CHH
T ss_pred HHHHHhccHHHHHHHHHHcC---------------------------------------------------------Cch
Confidence 99999999999999988861 344
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH--hc
Q 041741 274 LSNSLLDMYAKNGDMDSAEVIFSNLPERSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACV--RS 351 (748)
Q Consensus 274 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~ 351 (748)
++..++.+|...|+++.|......+. ..+.....++..|.+.|++++|+.+++...... +-....|+.+-.+++ +.
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p 256 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP 256 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCH
Confidence 55556666666777777766665543 333344567777888888888888888776543 333445555555554 35
Q ss_pred CCHHHHHHHhccCCC--------CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHH
Q 041741 352 GDIKTGREMFDSMPS--------PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESG 423 (748)
Q Consensus 352 ~~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 423 (748)
+++.+.++.|..-.. .+...|..+...|...++++.|... |.+. +|+...-..+.....+..+.+.-
T Consensus 257 ~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~ely 331 (449)
T 1b89_A 257 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELY 331 (449)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHH
Confidence 566677777665442 3577899999999999999988874 4443 33433333334444444444444
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhC
Q 041741 424 KQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRI 465 (748)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 465 (748)
-+...--++. .+...+.|+.+....=+...+..+|+..
T Consensus 332 Ykai~fyl~~----~p~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 332 YRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHHHHhc----CHHHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 3333333322 2223444444444444444444444433
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=1e-14 Score=153.64 Aligned_cols=352 Identities=12% Similarity=0.010 Sum_probs=288.6
Q ss_pred CCcchHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhc----cCChHHHHHHHHHHHhhcCCch
Q 041741 367 PSVSSWNAMLSSYSQ----SENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAA----MGILESGKQVHAASLKTASHID 438 (748)
Q Consensus 367 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 438 (748)
.++..+..+...|.. .+++++|+..+++..+.| ++..+..+-..+.. .++.++|...++...+.+ +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 344555666666666 789999999999988764 45666677777777 899999999999998876 5
Q ss_pred hHHHHHHHHHHHh----cCChHHHHHHHhhCCCC-CcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHH
Q 041741 439 NYVASGLIGIYSK----CQRNELAERVFHRIPEL-DIVCWNSMIAGLSL----NSLDIEAFMFFKQMRQNEMYPTQFSFA 509 (748)
Q Consensus 439 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 509 (748)
......+..+|.. .+++++|...|++..+. ++..+..+...|.. .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5666778888888 88999999999987754 56677888888887 789999999999998875 566677
Q ss_pred HHHHhhcC----CCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHHHHhhhcCC-CCHHHHHHHHHH
Q 041741 510 TVLSSCAK----LSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCK----CGDIYGARQFFDMMHG-KNTVTWNEMIHG 580 (748)
Q Consensus 510 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~ 580 (748)
.+...+.. .+++++|..++....+.+ ++..+..+...|.. .+++++|..+|++..+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777766 899999999999998865 56677778888886 7899999999998764 577788888888
Q ss_pred HHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-----CChHHHHHHHHHhhhhhCCCCChhHHHHHHHH
Q 041741 581 YAQ----NGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHS-----GLVDVGVEIFNSMQLDHGVEPILDHYTCMIDC 651 (748)
Q Consensus 581 ~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 651 (748)
+.. .+++++|+..|++..+.| +...+..+...|... +++++|+..+++.. +.+ +...+..++.+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA-EQG---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH-hcC---CHHHHHHHHHH
Confidence 888 899999999999998865 345566677777665 89999999999984 332 45667788888
Q ss_pred HHhcC---ChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhh----
Q 041741 652 LGRAG---HFHEAEMLIDEMPCKDDPVIWEVLLSSCRL----HANVRLAKRAAEELFRLDPKNSAPYSLLANIYSS---- 720 (748)
Q Consensus 652 ~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 720 (748)
|...| ++++|..++++.....++..+..+...+.. .+++++|...++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88766 889999999988645678888899998888 789999999999998864 67899999999998
Q ss_pred cCChHHHHHHHHHHHhcCC
Q 041741 721 LGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 721 ~g~~~~A~~~~~~~~~~~~ 739 (748)
.+|.++|...|++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999887663
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=9.2e-17 Score=163.08 Aligned_cols=282 Identities=12% Similarity=-0.059 Sum_probs=223.3
Q ss_pred HHhcCChHHHHH-HHhhCCCC-------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCC
Q 041741 449 YSKCQRNELAER-VFHRIPEL-------DIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSS 520 (748)
Q Consensus 449 ~~~~~~~~~a~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 520 (748)
+...++++.|.. .+++.... +...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344567777877 77755431 34568888899999999999999999998764 4467788888999999999
Q ss_pred chhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-CHHHHHH---------------HHHHHH
Q 041741 521 SFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--K-NTVTWNE---------------MIHGYA 582 (748)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~ 582 (748)
++.|...++.+.+.. +.+..++..+..++...|++++|.+.++.+.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999998876 44778888999999999999999999988653 2 2222211 133334
Q ss_pred HcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHH
Q 041741 583 QNGYGDEAVRLYKDMIASGVKP-DDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEA 661 (748)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 661 (748)
..|++++|+..++++.+..... +..++..+...+...|++++|+..++++... .+.+...+..++.++...|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999999863211 4788999999999999999999999998533 233467889999999999999999
Q ss_pred HHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CcchHHHhHHHhhcCChHHHH
Q 041741 662 EMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN-----------SAPYSLLANIYSSLGRWDDLR 728 (748)
Q Consensus 662 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 728 (748)
...++++. .+.++..+..++..+...|++++|...+++++++.|++ +.++..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99999885 45568889999999999999999999999999999987 688999999999999999999
Q ss_pred HHHHHH
Q 041741 729 AVRELM 734 (748)
Q Consensus 729 ~~~~~~ 734 (748)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 988743
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=6.3e-16 Score=149.54 Aligned_cols=266 Identities=11% Similarity=-0.046 Sum_probs=194.1
Q ss_pred cCChHHHHHHHhhCCCCCcc----hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHH
Q 041741 452 CQRNELAERVFHRIPELDIV----CWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQV 527 (748)
Q Consensus 452 ~~~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 527 (748)
.|++..|+..++.....++. ....+..+|...|+++.|+..++. .-+|+..++..+...+...++.+.|...
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 44455555544444332221 223345566666666666654433 1245556666677777777777777777
Q ss_pred HHHHHHhCCCC-chHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 041741 528 HAQIEKDGYVN-DIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD 606 (748)
Q Consensus 528 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 606 (748)
++.+...+..| ++..+..+..++...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.++++.+. .|+.
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~ 163 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDA 163 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCc
Confidence 77777665434 566667778889999999999999998 567889999999999999999999999999986 4554
Q ss_pred HHH---HHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHH
Q 041741 607 ITF---VAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLL 681 (748)
Q Consensus 607 ~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 681 (748)
... ..++..+...|++++|..+|+++... .+.+...+..++.++.+.|++++|...+++.. .+.++.++..++
T Consensus 164 ~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 164 TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 311 12334445669999999999999643 34567888999999999999999999999875 455788999999
Q ss_pred HHHHhcCCHHH-HHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHH
Q 041741 682 SSCRLHANVRL-AKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVR 731 (748)
Q Consensus 682 ~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 731 (748)
..+...|+.++ +.+.++++++++|+++.+.. ...+.+.++++..-|
T Consensus 242 ~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 99988998865 67899999999998876554 456667777766554
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=2.8e-16 Score=154.29 Aligned_cols=285 Identities=13% Similarity=0.122 Sum_probs=130.4
Q ss_pred hcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHH
Q 041741 350 RSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAA 429 (748)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 429 (748)
+.|++++|.+.++++..| .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|+++++...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456677777777777443 4777777888888888888877754 25666777777777778888888887776
Q ss_pred HHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 041741 430 SLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFA 509 (748)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 509 (748)
.++. .+++.+...++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6663 33456677788888888888888877753 66678899999999999999999999866 3688
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhH
Q 041741 510 TVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDE 589 (748)
Q Consensus 510 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 589 (748)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8889999999999998888877 378888999999999999999977776654 444445568888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCC--CChHHHHHHHHHhhhhhCCCC------ChhHHHHHHHHHHhcCChHHH
Q 041741 590 AVRLYKDMIASGVKPDDITFVAILTACSHS--GLVDVGVEIFNSMQLDHGVEP------ILDHYTCMIDCLGRAGHFHEA 661 (748)
Q Consensus 590 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A 661 (748)
|..+++..+... +-....|+-+.-+|++- +++.+.++.|..- -.++| +...|..++..|...++++.|
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 999999888654 44445666666655543 4555555554422 24444 356688889999999999988
Q ss_pred HHHHhh
Q 041741 662 EMLIDE 667 (748)
Q Consensus 662 ~~~~~~ 667 (748)
....-+
T Consensus 302 ~~tm~~ 307 (449)
T 1b89_A 302 IITMMN 307 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876544
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=1.5e-14 Score=154.02 Aligned_cols=410 Identities=9% Similarity=0.009 Sum_probs=264.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--CCcchHHHHHHHH
Q 041741 302 SVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPS--PSVSSWNAMLSSY 379 (748)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~ 379 (748)
+...|..++. +.+.|++++|..+|+++.+.- +-+...+...+..+.+.|+++.|..+|++... |+...|..++...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4557777777 467788888888888887652 33455677777777778888888888877765 5555555555322
Q ss_pred -HccCCHHHHHH----HHHHHHHc-CCCCC-HhhHHHHHHHhhc---------cCChHHHHHHHHHHHhhcCCchhHHHH
Q 041741 380 -SQSENHKEAIK----LFREMQFR-GVKPD-RTTLAIILSSCAA---------MGILESGKQVHAASLKTASHIDNYVAS 443 (748)
Q Consensus 380 -~~~~~~~~a~~----~~~~m~~~-g~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 443 (748)
...|+.+.|.+ +|+..... |..|+ ...+...+..... .|+++.+..+++.+++.........+.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 33456555544 55555432 44443 3344444443322 566777777777776621111122222
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH------HCC---CCCCH--------H
Q 041741 444 GLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMR------QNE---MYPTQ--------F 506 (748)
Q Consensus 444 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~--------~ 506 (748)
.........+. ..+..++. ...+++..|..++..+. +.. ++|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 22211100110 00111110 01233455555555421 111 23331 2
Q ss_pred HHHHHHHhhc----CCCCc----hhHHHHHHHHHHhCCCCchHHHHHHHHHHHh-------cCCHH-------HHHHHhh
Q 041741 507 SFATVLSSCA----KLSSS----FQGRQVHAQIEKDGYVNDIFVGSALIEMYCK-------CGDIY-------GARQFFD 564 (748)
Q Consensus 507 ~~~~l~~~~~----~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~ 564 (748)
.|...+.... ..++. .++..+++...... +.++.+|..++..+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 3333332221 12233 35667788777753 4467888888887775 68887 8999999
Q ss_pred hcCC---C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCC
Q 041741 565 MMHG---K-NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD--ITFVAILTACSHSGLVDVGVEIFNSMQLDHGV 638 (748)
Q Consensus 565 ~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 638 (748)
+..+ | +...|..++..+.+.|++++|..+|+++++. .|+. ..|..++..+.+.|++++|..+|++... .
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~ 385 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---D 385 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---C
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---c
Confidence 8763 4 5778999999999999999999999999984 5643 4788888888889999999999998853 2
Q ss_pred CCC-hhHHHHHHHH-HHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----c
Q 041741 639 EPI-LDHYTCMIDC-LGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA----P 710 (748)
Q Consensus 639 ~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~ 710 (748)
.|. ...+...+.. +...|++++|..+|++.. .+.++..|..++..+...|+.++|..++++++...|.+|. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 333 3334333333 336899999999999874 3446889999999999999999999999999998876665 5
Q ss_pred hHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 711 YSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
+...+......|+.+.+..+++++.+.
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666677888889999999999988764
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=2.1e-16 Score=152.91 Aligned_cols=248 Identities=9% Similarity=-0.002 Sum_probs=203.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 041741 477 IAGLSLNSLDIEAFMFFKQMRQNEMYPTQ--FSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCG 554 (748)
Q Consensus 477 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 554 (748)
++-....|++..|+..++..... .|+. .....+..++...|+++.|...++. .-+|+...+..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 44566789999999988876533 4443 3556678899999999999876644 24567788888999999999
Q ss_pred CHHHHHHHhhhcC----CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHH
Q 041741 555 DIYGARQFFDMMH----GK-NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIF 629 (748)
Q Consensus 555 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 629 (748)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+...|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 566778888999999999999999987 567788999999999999999999999
Q ss_pred HHhhhhhCCCCChhH---HHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041741 630 NSMQLDHGVEPILDH---YTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLD 704 (748)
Q Consensus 630 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 704 (748)
+++... .|+... ...++..+...|++++|..+++++. .++++..+..++..+...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999533 365321 1233455556699999999999985 56688999999999999999999999999999999
Q ss_pred CCCCcchHHHhHHHhhcCChHH-HHHHHHHHHhcCC
Q 041741 705 PKNSAPYSLLANIYSSLGRWDD-LRAVRELMSENCI 739 (748)
Q Consensus 705 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 739 (748)
|+++.++..++.++...|+.++ +.++++++.+..+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999987 5688888776544
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=2.5e-15 Score=158.20 Aligned_cols=216 Identities=11% Similarity=-0.083 Sum_probs=120.7
Q ss_pred CCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHH-----------
Q 041741 518 LSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQ----------- 583 (748)
Q Consensus 518 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~----------- 583 (748)
.++.+.|..+++...... +.+..++..+...|...|++++|...+++..+ .+..++..+..+|..
T Consensus 226 ~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~ 304 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLREN 304 (472)
T ss_dssp ----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344455555555544433 22344445555555555555555555554432 233344444433321
Q ss_pred --------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChh----HHHHHHHH
Q 041741 584 --------NGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILD----HYTCMIDC 651 (748)
Q Consensus 584 --------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~ 651 (748)
.+.++.|...+++..+.. +.+..++..+...+...|++++|+..|++.. . ..|+.. .+..++..
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL-~--~~~~~~~~~~~~~~~~~~ 380 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEF-S--KELTPVAKQLLHLRYGNF 380 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH-H--SCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHH-h--cCCCChHHHHHHHHHHHH
Confidence 223567888888888753 3344578888899999999999999999884 2 233322 22333332
Q ss_pred -HHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHH
Q 041741 652 -LGRAGHFHEAEMLIDEMP-CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRA 729 (748)
Q Consensus 652 -~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 729 (748)
+...|++++|+..+++.. ..|+..... +....+...++++++.+|+++.++..||.+|...|++++|++
T Consensus 381 ~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 381 QLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred HHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 356789999999988774 555543322 223455677888899999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCC
Q 041741 730 VRELMSENCIVKDPAYSL 747 (748)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~ 747 (748)
+|+++.+.+...-...+|
T Consensus 452 ~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 452 DSERGLESGSLIPSASSW 469 (472)
T ss_dssp ------------------
T ss_pred HHHHHHhcCCCCCcHhhc
Confidence 999988766543334444
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=2.9e-16 Score=159.12 Aligned_cols=260 Identities=11% Similarity=-0.070 Sum_probs=209.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHH
Q 041741 469 DIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIE 548 (748)
Q Consensus 469 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 548 (748)
+...+..+...+...|++++|+..|+++.... +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557888888888899999999999888753 4467788888888899999999999999888775 346778888999
Q ss_pred HHHhcCCHHHHHHHhhhcCC--CC-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 041741 549 MYCKCGDIYGARQFFDMMHG--KN-----------TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKP--DDITFVAIL 613 (748)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~ 613 (748)
+|...|++++|...|+++.+ |+ ...+..+...+...|++++|+.+++++.+.. +. +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 99999999999999988764 21 2233445788899999999999999999964 22 578899999
Q ss_pred HHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHH
Q 041741 614 TACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVR 691 (748)
Q Consensus 614 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 691 (748)
..+...|++++|+..++++... .+.+...+..++.+|...|++++|...++++. .+.++..+..++..+...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999998533 23347789999999999999999999999885 4456888999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CCcchHHHhHHHhhcCChHHHHHHHHH
Q 041741 692 LAKRAAEELFRLDPK------------NSAPYSLLANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 692 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (748)
+|...+++++++.|+ +..++..++.++...|+.+.|....++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999887 367799999999999999999888764
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=2.1e-16 Score=160.43 Aligned_cols=275 Identities=11% Similarity=-0.041 Sum_probs=202.6
Q ss_pred CChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHH-HHHHHHHCCC-CC--CHHHHHHHHHhhcCCCCchhHHHHH
Q 041741 453 QRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFM-FFKQMRQNEM-YP--TQFSFATVLSSCAKLSSSFQGRQVH 528 (748)
Q Consensus 453 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~ 528 (748)
+.++.+...++.+...++. ++...|++++|+. .+++...... .| +...+..+...+...|+++.|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444444445444433322 3445678888888 7776554321 11 3456778888999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 041741 529 AQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMH---GKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPD 605 (748)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 605 (748)
+.+.+.. +.+...+..+..++...|++++|.+.|+++. ..+..++..++.++...|++++|+..++++.+.. |+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~ 164 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PA 164 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC
Confidence 9999875 4577888999999999999999999999875 3578899999999999999999999999999863 43
Q ss_pred HH-HHHH---------------HHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 606 DI-TFVA---------------ILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 606 ~~-~~~~---------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
.. .+.. .+..+...|++++|+..++++.......++...+..++.++.+.|++++|...++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 2211 1333348899999999999996443332357888999999999999999999999885
Q ss_pred --CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 670 --CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 670 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
.+.++..+..++..+...|++++|...++++++.+|+++.++..++.+|...|++++|..+++++.+.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44568899999999999999999999999999999999999999999999999999999999998763
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=4.2e-16 Score=157.91 Aligned_cols=231 Identities=12% Similarity=-0.041 Sum_probs=195.5
Q ss_pred CHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHH
Q 041741 504 TQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHG 580 (748)
Q Consensus 504 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 580 (748)
+...+..+...+...|+++.|..+++.+.+.. +.+...+..+..+|.+.|++++|...|+++.+ .+..+|..++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457778888999999999999999999875 45788899999999999999999999998763 468899999999
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHH
Q 041741 581 YAQNGYGDEAVRLYKDMIASGVKPDDI-----------TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMI 649 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 649 (748)
|...|++++|+..++++.+. .|+.. .+..+...+...|++++|+.+++++.......++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999985 34432 233457788999999999999999964433333678899999
Q ss_pred HHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHH
Q 041741 650 DCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDL 727 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 727 (748)
.+|...|++++|...++++. .+.++..|..++..+...|++++|...++++++.+|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999885 4557889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 041741 728 RAVRELMSEN 737 (748)
Q Consensus 728 ~~~~~~~~~~ 737 (748)
..+++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=1.1e-15 Score=152.30 Aligned_cols=260 Identities=10% Similarity=-0.096 Sum_probs=205.9
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 041741 470 IVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEM 549 (748)
Q Consensus 470 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (748)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445666777777888888888888877653 3356677777777888888888888888877764 3456777788888
Q ss_pred HHhcCCHHHHHHHhhhcCC--C-CHHHHHHH--------------HH-HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 041741 550 YCKCGDIYGARQFFDMMHG--K-NTVTWNEM--------------IH-GYAQNGYGDEAVRLYKDMIASGVKPDDITFVA 611 (748)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 611 (748)
+...|++++|.+.++.+.+ | +...+..+ .. .+...|++++|..+++++.+.. +.+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 8888888888888887653 2 22223222 22 3677889999999999999864 456788999
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCC
Q 041741 612 ILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHAN 689 (748)
Q Consensus 612 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 689 (748)
+...+...|++++|...++++... .+.+...+..++.++...|++++|...++++. .+.++..+..++..+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999998532 23346778899999999999999999999875 44568889999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 690 VRLAKRAAEELFRLDPK------------NSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 690 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
+++|...++++++..|+ ++.++..++.++...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 6789999999999999999999998754
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=1.9e-13 Score=145.54 Aligned_cols=406 Identities=12% Similarity=0.062 Sum_probs=277.4
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 041741 269 EADLHLSNSLLDMYAKNGDMDSAEVIFSNLPER---SVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINML 345 (748)
Q Consensus 269 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 345 (748)
+-+...+..++. +...|+++.|..+|+.+.+. +...|...+..+.+.|++++|..+|+++.... |+...+...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 446778888888 47899999999999998763 44578899999999999999999999998764 6777766666
Q ss_pred HHH-HhcCCHHHHHH----HhccCC------CCCcchHHHHHHHHHc---------cCCHHHHHHHHHHHHHcCCCCCH-
Q 041741 346 VAC-VRSGDIKTGRE----MFDSMP------SPSVSSWNAMLSSYSQ---------SENHKEAIKLFREMQFRGVKPDR- 404 (748)
Q Consensus 346 ~~~-~~~~~~~~a~~----~~~~~~------~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~- 404 (748)
... ...|+.+.|.+ +|+... .++...|...+....+ .|+++.|..+|++..+. |..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 533 35677776654 555432 1345667777766554 68899999999999873 432
Q ss_pred --hhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHh----------hCC---CCC
Q 041741 405 --TTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFH----------RIP---ELD 469 (748)
Q Consensus 405 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------~~~---~~~ 469 (748)
..+..........|. ..+..++. ...+++..|..++. ... .|+
T Consensus 164 ~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 222222111100110 01111110 01122233332222 111 111
Q ss_pred --------cchHHHHHHHHHhC----CCc----hHHHHHHHHHHHCCCCCCHHHHHHHHHhhcC-------CCCch----
Q 041741 470 --------IVCWNSMIAGLSLN----SLD----IEAFMFFKQMRQNEMYPTQFSFATVLSSCAK-------LSSSF---- 522 (748)
Q Consensus 470 --------~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-------~~~~~---- 522 (748)
...|...+...... ++. ..+..+|++..... +-+...|......+.. .|+++
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 12344444332221 222 36778888887752 3456667666666654 78887
Q ss_pred ---hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-CH-HHHHHHHHHHHHcCChhHHHHHHH
Q 041741 523 ---QGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--K-NT-VTWNEMIHGYAQNGYGDEAVRLYK 595 (748)
Q Consensus 523 ---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~a~~~~~ 595 (748)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|++++|..+|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888888887633345788999999999999999999999998763 4 33 578899999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-hcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-
Q 041741 596 DMIASGVKPDDITFVAILTA-CSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD- 672 (748)
Q Consensus 596 ~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~- 672 (748)
+..+.. +.+...+...... +...|+.++|..+|++..... +.+...+..++..+.+.|+.++|..+|++.. ..|
T Consensus 381 ~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 381 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 999852 2223333322222 335899999999999886443 2346788899999999999999999999885 222
Q ss_pred C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041741 673 D----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 673 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 706 (748)
+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2 347888888888899999999999999999885
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.8e-15 Score=139.71 Aligned_cols=194 Identities=13% Similarity=0.028 Sum_probs=158.1
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041741 537 VNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAIL 613 (748)
Q Consensus 537 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 613 (748)
++++..+..+...+.+.|++++|...|++..+ .+...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45677788888999999999999999998764 467889999999999999999999999999963 44567888899
Q ss_pred HHhcCC-----------CChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHH
Q 041741 614 TACSHS-----------GLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEV 679 (748)
Q Consensus 614 ~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 679 (748)
.++... |++++|+..+++... ..|+ ...+..++.+|...|++++|...+++.. . .++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 999999 999999999999853 3454 6778899999999999999999999885 5 78899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
+...+...|++++|...++++++.+|+++.++..++.++...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998754
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=8.5e-14 Score=146.45 Aligned_cols=379 Identities=11% Similarity=-0.041 Sum_probs=195.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHhccCCC----------
Q 041741 305 SWNVMIAGYGQKYQSTKAIELLQRMKSC-------GFEP-DEVTSINMLVACVRSGDIKTGREMFDSMPS---------- 366 (748)
Q Consensus 305 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------- 366 (748)
.||.+...+...|+.++|++.|++..+. ...| ...+|..+..+|...|++++|...+++...
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 4555555555555555555555554321 1122 234566666666667777666666554421
Q ss_pred -CCcchHHHHHHHHH--ccCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHH---hhccCChHHHHHHHHHHHhhcCCchh
Q 041741 367 -PSVSSWNAMLSSYS--QSENHKEAIKLFREMQFRGVKPDR-TTLAIILSS---CAAMGILESGKQVHAASLKTASHIDN 439 (748)
Q Consensus 367 -~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~ 439 (748)
....++..+..++. ..+++++|++.|++..+. .|+. ..+..+..+ +...++.+.+.+.+..+++..+. +.
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~ 209 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQ 209 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-ch
Confidence 12234444443443 345688888888887765 4543 233332222 33456667777777777765543 23
Q ss_pred HHHHHHHHHHH----hcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041741 440 YVASGLIGIYS----KCQRNELAERVFHRIPE---LDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVL 512 (748)
Q Consensus 440 ~~~~~l~~~~~----~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 512 (748)
..+..+...+. ..++.++|.+.+++... .+...+..+...|...|++++|+..+++..+.. +.+..++..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 33333333332 34556666666665542 234456666677777777777777777766542 22333444433
Q ss_pred HhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHHcCChhH
Q 041741 513 SSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMH---GKNTVTWNEMIHGYAQNGYGDE 589 (748)
Q Consensus 513 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 589 (748)
..+...+. ...... . ..........+.++.|...++... ..+...+..+...+...|++++
T Consensus 289 ~~y~~~~~---------~~~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 289 CCYRAKVF---------QVMNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHHHHH---------HHHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHH---------HhhhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 33321100 000000 0 000001111234567777777654 2456678889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH--HHHHHHH-HhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 041741 590 AVRLYKDMIASGVKPDDI--TFVAILT-ACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLID 666 (748)
Q Consensus 590 a~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 666 (748)
|+..|++.++....|... .+..+.. .....|++++|+..|++.. .+.|+........ ..+..+++
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~~l~~~~~ 420 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------DKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------HHHHHHHH
Confidence 999999999864333221 2233332 3357899999999999875 4566643322222 23333443
Q ss_pred hCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHh
Q 041741 667 EMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLA 715 (748)
Q Consensus 667 ~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 715 (748)
+.. .+.++..+..++..+...|++++|.+.++++++++|.+|.+...+|
T Consensus 421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 332 4557889999999999999999999999999999999988876665
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.8e-14 Score=137.76 Aligned_cols=217 Identities=9% Similarity=-0.013 Sum_probs=165.4
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--C----C----HHHHHH
Q 041741 507 SFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--K----N----TVTWNE 576 (748)
Q Consensus 507 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~ 576 (748)
.+..+...+...|+++.|..+++.+.+.. .+...+..+..++...|++++|.+.++...+ | + ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44445555556666666666666666555 5566666677777777777777777776553 1 1 467788
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhc
Q 041741 577 MIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRA 655 (748)
Q Consensus 577 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 655 (748)
+..++...|++++|+..++++.+. .|+.. .+...|++++|...++++.. ..|+ ...+..++.++...
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHh
Confidence 888888889999999999888884 46543 34455778888888888742 2333 56677888889999
Q ss_pred CChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHH
Q 041741 656 GHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 656 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (748)
|++++|...++++. .+.++..+..++..+...|++++|...++++++.+|+++.++..++.+|...|++++|...+++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999988875 4456788888888899999999999999999999999999999999999999999999999998
Q ss_pred HHhc
Q 041741 734 MSEN 737 (748)
Q Consensus 734 ~~~~ 737 (748)
+.+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=3.9e-16 Score=165.61 Aligned_cols=158 Identities=18% Similarity=0.138 Sum_probs=128.7
Q ss_pred hhhhHHHHHhhcCCChhHHHHhhccCC-------CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHH
Q 041741 55 YSWNAILSAQCKSDDLEFAYKLFDEMP-------ERNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVF 127 (748)
Q Consensus 55 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 127 (748)
.+|+++|.+||+.|++++|..+|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 489999999999999999999997753 4899999999999999999999999999999999999999999999
Q ss_pred HHhccccCc-HHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCC-----CCeehHHHHHHHHHcCCC
Q 041741 128 KASTALLDV-EHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSE-----PNEVTFTAMMSGLAKTDR 201 (748)
Q Consensus 128 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~ 201 (748)
.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+.- +...+...|...+.+.+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~~ 287 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCSC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCCC
Confidence 999999985 78999999999999999999999999888775444444444333321 124455566666666552
Q ss_pred ---------HHHHHHHHHHH
Q 041741 202 ---------VVEALEMFRLM 212 (748)
Q Consensus 202 ---------~~~a~~~~~~m 212 (748)
.++-.+.|++=
T Consensus 288 ~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 288 VSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp CCCCCCSSCHHHHHHHHHHH
T ss_pred CcCccccCCHHHHHHHHHHH
Confidence 35555555543
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.60 E-value=1.6e-13 Score=136.46 Aligned_cols=264 Identities=10% Similarity=-0.038 Sum_probs=137.1
Q ss_pred CcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 041741 368 SVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIG 447 (748)
Q Consensus 368 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 447 (748)
+...+..+...+...|++++|..+++++.+.. +.+...+..+..++...|+++.|...++.+.+..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------- 87 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----------- 87 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-----------
Confidence 33456667777788888888888888877652 234455555556666666666666666666554322
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-HHHHH-------------H-H
Q 041741 448 IYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQ-FSFAT-------------V-L 512 (748)
Q Consensus 448 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~-------------l-~ 512 (748)
+...+..+...+...|++++|...++++.... |+. ..+.. + .
T Consensus 88 ---------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 88 ---------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC-------------------
T ss_pred ---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHH
Confidence 22334444445555555555555555555432 111 11111 1 1
Q ss_pred H-hhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChh
Q 041741 513 S-SCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGD 588 (748)
Q Consensus 513 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 588 (748)
. .+...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+ .+...+..++..+...|+++
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 1 2455556666666666655543 22445555555555555555555555554431 23445555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC----------ChhHHHHHHHHHHhcCCh
Q 041741 589 EAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP----------ILDHYTCMIDCLGRAGHF 658 (748)
Q Consensus 589 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~ 658 (748)
+|...++++.+.. +.+...+..+...+...|++++|...++++.....-.. +...+..++.++.+.|++
T Consensus 224 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 224 EALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 5555555555532 23344555555555555555555555555432111000 133444455555555555
Q ss_pred HHHHHHHhhC
Q 041741 659 HEAEMLIDEM 668 (748)
Q Consensus 659 ~~A~~~~~~~ 668 (748)
++|...+++.
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=2.7e-13 Score=140.23 Aligned_cols=376 Identities=9% Similarity=0.006 Sum_probs=194.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH---HHHHHHhccCCCCCcchHHHHHHHHHccC--
Q 041741 309 MIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDI---KTGREMFDSMPSPSVSSWNAMLSSYSQSE-- 383 (748)
Q Consensus 309 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~ll~~~~~~~-- 383 (748)
+...+.+.|++++|+++|++..+.|. ...+..+-..+...|+. ++|...|+...+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 45566777888888888888877762 23333444455556776 88888888887767777777777555554
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCCh---HHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCC---
Q 041741 384 ---NHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGIL---ESGKQVHAASLKTASHIDNYVASGLIGIYSKCQR--- 454 (748)
Q Consensus 384 ---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 454 (748)
++++|+..+++..+.|... .+..+...+...+.. ..+.+.+......+ +......+..+|...+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 7889999999988876433 444444455444432 33344444444444 23444555566666553
Q ss_pred -hHHHHHHHhhCCCCCcchHHHHHHHHHhCC---CchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHH
Q 041741 455 -NELAERVFHRIPELDIVCWNSMIAGLSLNS---LDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQ 530 (748)
Q Consensus 455 -~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 530 (748)
.+.+..+++.....++..+..+...|...| +.++|+..|++..+.| +++...+..+...|...
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g------------ 226 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA------------ 226 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC------------
Confidence 344444555555555556666666666666 6666666666666655 22222222233333222
Q ss_pred HHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHH-H--HHcCChhHHHHHHHHHHHcCCCCCHH
Q 041741 531 IEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHG-Y--AQNGYGDEAVRLYKDMIASGVKPDDI 607 (748)
Q Consensus 531 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~ 607 (748)
....+++++|.+.|+.....++..+..|... + ...+++++|+..|++..+.| +..
T Consensus 227 -------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 227 -------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp -------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred -------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 0001455555555555442244455555554 2 34566677777777766654 344
Q ss_pred HHHHHHHHhcCCC-----ChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCCCCCHhHHH
Q 041741 608 TFVAILTACSHSG-----LVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGR----AGHFHEAEMLIDEMPCKDDPVIWE 678 (748)
Q Consensus 608 ~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 678 (748)
.+..+...|. .| ++++|+..|++.. .-+......++.+|.. ..++++|..++++.....++....
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 4444544444 33 6777777776652 3345555666666655 336777777776665334455555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcchHHHhHHH--hhcCChHHHHHHHHHHHh
Q 041741 679 VLLSSCRL----HANVRLAKRAAEELFRLDPKNSAPYSLLANIY--SSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 679 ~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 736 (748)
.+...|.. ..|+++|...++++.+..+.+ +...+..+. ...++.++|....++.++
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55555542 346777777777776655432 333333332 333455566666665544
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=5.8e-14 Score=134.22 Aligned_cols=234 Identities=8% Similarity=-0.087 Sum_probs=184.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCC--Cc----hHHHHH
Q 041741 472 CWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYV--ND----IFVGSA 545 (748)
Q Consensus 472 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 545 (748)
.+..+...+...|++++|+..|++..+.. .+...+..+...+...|+++.|...+..+.+.... ++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45566777777888888888888877765 66677777888888888888888888877765321 12 577888
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChH
Q 041741 546 LIEMYCKCGDIYGARQFFDMMHG--KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVD 623 (748)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 623 (748)
+..++...|++++|...|+.+.+ |+. ..+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHH
Confidence 88899999999999999988764 442 34666788899999999999852 233457888888999999999
Q ss_pred HHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041741 624 VGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELF 701 (748)
Q Consensus 624 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 701 (748)
+|+..++++.... +.+...+..++.++...|++++|...+++.. .+.++..+..+...+...|++++|...+++++
T Consensus 157 ~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999985332 3346778899999999999999999998885 44568888899999999999999999999999
Q ss_pred hcC------CCCCcchHHHhHH
Q 041741 702 RLD------PKNSAPYSLLANI 717 (748)
Q Consensus 702 ~~~------p~~~~~~~~l~~~ 717 (748)
++. |++..+...+..+
T Consensus 235 ~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHT
T ss_pred HhChhhcCCCchHHHHHHHHHh
Confidence 998 8777776666554
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=2.7e-13 Score=128.96 Aligned_cols=197 Identities=8% Similarity=-0.075 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 041741 540 IFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTAC 616 (748)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 616 (748)
+..+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455556666666666666666665542 355667777777777777788888777777753 34556677777777
Q ss_pred cCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHH
Q 041741 617 SHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLA 693 (748)
Q Consensus 617 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 693 (748)
...|++++|..+++++.. .+..|+ ...+..++.++...|++++|...++++. .+.++..+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 778888888888877743 223443 4566677777888888888888877764 334567777777778888888888
Q ss_pred HHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 694 KRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 694 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
...++++++..|+++..+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888888888777788888888888888888888888776644
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=5.2e-13 Score=124.48 Aligned_cols=198 Identities=13% Similarity=0.025 Sum_probs=160.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041741 539 DIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTA 615 (748)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 615 (748)
++..+..+...+...|++++|.+.++.+.+ .+...+..++..+...|++++|..+++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 456667777888888888888888887652 457788888888889999999999999988863 4466778888888
Q ss_pred hcCC-CChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHH
Q 041741 616 CSHS-GLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVR 691 (748)
Q Consensus 616 ~~~~-~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 691 (748)
+... |++++|...++++.. .+..|+ ...+..++.++...|++++|...++++. .+.++..+..++..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8899 999999999988853 223343 5667788889999999999999988774 3445778888888888999999
Q ss_pred HHHHHHHHHHhcCC-CCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 692 LAKRAAEELFRLDP-KNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 692 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
+|...++++++..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999999 888888888888899999999999998876543
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=1.2e-12 Score=126.23 Aligned_cols=223 Identities=9% Similarity=-0.106 Sum_probs=111.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcC----CCCchhHHHHHHHHHHhCCCCchHHHH
Q 041741 469 DIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAK----LSSSFQGRQVHAQIEKDGYVNDIFVGS 544 (748)
Q Consensus 469 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 544 (748)
++.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|..+++...+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 3445555556666666666666666666552 123344444444444 555555555555544443
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--
Q 041741 545 ALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQ----NGYGDEAVRLYKDMIASGVKPDDITFVAILTACSH-- 618 (748)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 618 (748)
++..+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34444444444444 555555555555555432 33444444444444
Q ss_pred --CCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cC
Q 041741 619 --SGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGR----AGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRL----HA 688 (748)
Q Consensus 619 --~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 688 (748)
.+++++|+..+++.. ..+ +...+..++.+|.. .+++++|...+++.....++..+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKAC-DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHH-hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 555555555555542 211 23334444555544 55555555555544322334444445555555 55
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHhHHHhh----cCChHHHHHHHHHHHhc
Q 041741 689 NVRLAKRAAEELFRLDPKNSAPYSLLANIYSS----LGRWDDLRAVRELMSEN 737 (748)
Q Consensus 689 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 737 (748)
++++|...++++++.+| +.++..++.+|.. .|++++|.+++++..+.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 55555555555555543 4455555555555 55555555555554443
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=1.9e-13 Score=132.01 Aligned_cols=241 Identities=8% Similarity=-0.151 Sum_probs=189.4
Q ss_pred hCCCchHHHHHHHHHHHCCCC---CCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 041741 482 LNSLDIEAFMFFKQMRQNEMY---PTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYG 558 (748)
Q Consensus 482 ~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (748)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...++.+.+.. +.+...+..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788999999998876321 135577788888899999999999999988875 3467888899999999999999
Q ss_pred HHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhh
Q 041741 559 ARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLD 635 (748)
Q Consensus 559 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 635 (748)
|...|+++.+ .+...+..++.++...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998763 46788999999999999999999999999985 455544444555556779999999999877433
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 041741 636 HGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDD-----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA 709 (748)
Q Consensus 636 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 709 (748)
.+++... ..++..+...++.++|...+++.. ..|. +..+..++..+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2333333 347777888889999999998875 2221 567888888999999999999999999999997744
Q ss_pred chHHHhHHHhhcCChHHHHHHH
Q 041741 710 PYSLLANIYSSLGRWDDLRAVR 731 (748)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~ 731 (748)
..+.++...|++++|++.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 4477889999999999887
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2e-13 Score=131.68 Aligned_cols=244 Identities=12% Similarity=-0.005 Sum_probs=140.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCC--chHHHHHHHHHHHh
Q 041741 475 SMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVN--DIFVGSALIEMYCK 552 (748)
Q Consensus 475 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 552 (748)
.....+...|++++|+..|++..+.. +.+...+..+...+...|+++.|...++.+.+.+..+ ....+..+..++..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 33444455555555555555555432 1122244444445555555555555555554422111 12235556666666
Q ss_pred cCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHH
Q 041741 553 CGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIF 629 (748)
Q Consensus 553 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 629 (748)
.|++++|.+.|++..+ .+...|..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|+..+
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665542 345566667777777777777777777766642 333445555552333344777777777
Q ss_pred HHhhhhhCCCCC-hhHHHHHHHHHHhcCC---hHHHHHHHhhCC----CCCCH------hHHHHHHHHHHhcCCHHHHHH
Q 041741 630 NSMQLDHGVEPI-LDHYTCMIDCLGRAGH---FHEAEMLIDEMP----CKDDP------VIWEVLLSSCRLHANVRLAKR 695 (748)
Q Consensus 630 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~~------~~~~~l~~~~~~~~~~~~a~~ 695 (748)
+++... .|+ ...+..++.++...|+ +++|...+++.. ..|++ ..+..+...+...|++++|..
T Consensus 166 ~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 166 VKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 766422 233 4555666666666666 666666665553 12331 456667778888999999999
Q ss_pred HHHHHHhcCCCCCcchHHHhHHHhhcCC
Q 041741 696 AAEELFRLDPKNSAPYSLLANIYSSLGR 723 (748)
Q Consensus 696 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 723 (748)
.++++++++|+++.+...+..+....+.
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 9999999999998888888777665543
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=4.8e-13 Score=138.42 Aligned_cols=344 Identities=9% Similarity=-0.045 Sum_probs=230.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCCh---HHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 041741 374 AMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGIL---ESGKQVHAASLKTASHIDNYVASGLIGIYS 450 (748)
Q Consensus 374 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 450 (748)
.+...+.+.|++++|+++|++..+.|. ...+..+-..+...|+. ++|...++...+. ++..+..+..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 356677889999999999999988763 23333444455567777 8888888888765 3444555556454
Q ss_pred hcC-----ChHHHHHHHhhCCCC-CcchHHHHHHHHHhCCCc---hHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCc
Q 041741 451 KCQ-----RNELAERVFHRIPEL-DIVCWNSMIAGLSLNSLD---IEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSS 521 (748)
Q Consensus 451 ~~~-----~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 521 (748)
..+ +.++|...|++..++ ++..+..+...|...+.. .++.+.+......|. ......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 444 678899988887654 555788888888776654 345556665555543 33455566666677767
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC---CHHHHHHHhhhcCC---CCHHHHHHHHHHHHHc----CChhHHH
Q 041741 522 FQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCG---DIYGARQFFDMMHG---KNTVTWNEMIHGYAQN----GYGDEAV 591 (748)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~ 591 (748)
+.+......+.+.-...++..+..+..+|.+.| +.++|.+.|+...+ ++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 776666555555433445557888888999999 89999999987653 3444446677777554 6899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-h--cCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcC-----ChHHHHH
Q 041741 592 RLYKDMIASGVKPDDITFVAILTA-C--SHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAG-----HFHEAEM 663 (748)
Q Consensus 592 ~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~ 663 (748)
..|++.. .| +...+..+... + ...+++++|+..|++.. +.| +...+..++.+|. .| ++++|..
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999987 43 33445555554 3 45889999999999884 434 5667778888887 55 9999999
Q ss_pred HHhhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhh----cCChHHHHHHHHHHH
Q 041741 664 LIDEMPCKDDPVIWEVLLSSCRL----HANVRLAKRAAEELFRLDPKNSAPYSLLANIYSS----LGRWDDLRAVRELMS 735 (748)
Q Consensus 664 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 735 (748)
+|++.. +.++.....+...|.. ..|+++|...++++.+ +.++.+...|+.+|.. ..|.++|..+|+...
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999998 7778888888877765 3499999999999875 5578899999999975 568999999999987
Q ss_pred hcCC
Q 041741 736 ENCI 739 (748)
Q Consensus 736 ~~~~ 739 (748)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 7664
No 46
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=153.97 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhhhcC-------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 041741 540 IFVGSALIEMYCKCGDIYGARQFFDMMH-------GKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAI 612 (748)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 612 (748)
..+|+++|.+|++.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3455555555555555555555554432 355666666666666666666666666666666666666666666
Q ss_pred HHHhcCCCCh-HHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhc
Q 041741 613 LTACSHSGLV-DVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRA 655 (748)
Q Consensus 613 ~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 655 (748)
|.++++.|+. ++|.++|++| ...|+.||..+|+.++....+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM-~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQM-SQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH-HHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHH-HHcCCCCChhhcccccChhhHH
Confidence 6666665553 4555666666 4456666665555555444443
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=2.7e-13 Score=128.16 Aligned_cols=209 Identities=9% Similarity=0.055 Sum_probs=94.7
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHH
Q 041741 506 FSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYA 582 (748)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 582 (748)
.++..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 344445555555566666666555555432 22344555555555555555555555554431 24445555555555
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 041741 583 QNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAE 662 (748)
Q Consensus 583 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 662 (748)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..++.++...|++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555542 233444555555555555555555555554321 1122344445555555555555555
Q ss_pred HHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHH
Q 041741 663 MLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIY 718 (748)
Q Consensus 663 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 718 (748)
..++++. .+.++..+..++..+...|++++|...++++++.+|+++.++..++.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 5555442 2233444555555555555555555555555555555555544444443
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=5.3e-13 Score=119.86 Aligned_cols=166 Identities=14% Similarity=0.054 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHH
Q 041741 570 NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMI 649 (748)
Q Consensus 570 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 649 (748)
++..|..++..+...|++++|++.|++.++.. +-+...+..+..++...|++++|+..++..... .+.+...+..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 56678888899999999999999999988863 345567888888899999999999998887422 223356677788
Q ss_pred HHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHH
Q 041741 650 DCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDL 727 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 727 (748)
..+...+++++|...+++.. .+.++..+..++..+...|++++|++.++++++.+|+++.++..+|.+|...|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88889999999999888775 4456788888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 041741 728 RAVRELMSENC 738 (748)
Q Consensus 728 ~~~~~~~~~~~ 738 (748)
++.|+++.+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999876643
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=4.8e-13 Score=126.45 Aligned_cols=199 Identities=8% Similarity=0.008 Sum_probs=155.5
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041741 538 NDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILT 614 (748)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 614 (748)
.....+..+...+...|++++|...|+++.+ .+...+..++..+...|++++|+..++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3566677788889999999999999998754 467888899999999999999999999999863 456778889999
Q ss_pred HhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHH
Q 041741 615 ACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRL 692 (748)
Q Consensus 615 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 692 (748)
.+...|++++|...++++.... +.+...+..++.++...|++++|...++++. .+.++..+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999985332 3356778889999999999999999999875 45568888889999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 693 AKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 693 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
|...++++++..|+++.++..++.+|...|++++|..+++++.+..+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999999999999999876543
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=8.9e-13 Score=127.08 Aligned_cols=228 Identities=9% Similarity=-0.023 Sum_probs=186.2
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC----HHHHHHHHHH
Q 041741 507 SFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--KN----TVTWNEMIHG 580 (748)
Q Consensus 507 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~ 580 (748)
.+......+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...++...+ ++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34456677889999999999999998865 33556788888999999999999999998764 22 3348899999
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChH
Q 041741 581 YAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFH 659 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 659 (748)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|+..+++.. ...|+ ...+..++..+...++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999963 4455789999999999999999999999885 33454 666777883444556999
Q ss_pred HHHHHHhhCC--CCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----CcchHHHhHHHhhcCChHH
Q 041741 660 EAEMLIDEMP--CKDDPVIWEVLLSSCRLHAN---VRLAKRAAEELFRLD---PKN-----SAPYSLLANIYSSLGRWDD 726 (748)
Q Consensus 660 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~ 726 (748)
+|...++++. .+.++..+..+...+...|+ +++|...++++++.. |+. ..++..++.+|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999885 34457778888888888888 888999999999986 432 1578889999999999999
Q ss_pred HHHHHHHHHhcCC
Q 041741 727 LRAVRELMSENCI 739 (748)
Q Consensus 727 A~~~~~~~~~~~~ 739 (748)
|.++++++.+..+
T Consensus 240 A~~~~~~al~~~p 252 (272)
T 3u4t_A 240 ADAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCc
Confidence 9999999876543
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=7.5e-13 Score=132.23 Aligned_cols=221 Identities=9% Similarity=0.021 Sum_probs=152.7
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC-HHHHHHHhhhcCC---CCHHHHHHHHHHHHH
Q 041741 508 FATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGD-IYGARQFFDMMHG---KNTVTWNEMIHGYAQ 583 (748)
Q Consensus 508 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 583 (748)
+..+...+...|++++|...++.+.+.. +-+...|+.+..++...|+ +++|...|+++.+ .+...|..+..++..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3344444445555555555555555443 2345566667777777775 7777777776653 466777778888888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHh-cCChHHH
Q 041741 584 NGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGR-AGHFHEA 661 (748)
Q Consensus 584 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~g~~~~A 661 (748)
.|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++.. +.|+ ...|..++.++.+ .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 888888888888888753 34556777888888888888888888887752 2343 5667777777777 5555776
Q ss_pred -----HHHHhhCC--CCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcC--------C-
Q 041741 662 -----EMLIDEMP--CKDDPVIWEVLLSSCRLHA--NVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLG--------R- 723 (748)
Q Consensus 662 -----~~~~~~~~--~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~- 723 (748)
+..+++.. .+.+...|..+...+...| ++++|.+.++++ +.+|+++.++..++.+|.+.| +
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 35666553 3345677777777777766 578888888887 778888888888888888774 2
Q ss_pred hHHHHHHHHHH
Q 041741 724 WDDLRAVRELM 734 (748)
Q Consensus 724 ~~~A~~~~~~~ 734 (748)
.++|+++|+++
T Consensus 334 ~~~A~~~~~~l 344 (382)
T 2h6f_A 334 LNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 47888888876
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=9.5e-12 Score=119.78 Aligned_cols=226 Identities=10% Similarity=-0.081 Sum_probs=164.5
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHHhhCCCC-CcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041741 438 DNYVASGLIGIYSKCQRNELAERVFHRIPEL-DIVCWNSMIAGLSL----NSLDIEAFMFFKQMRQNEMYPTQFSFATVL 512 (748)
Q Consensus 438 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 512 (748)
+...+..+...|...|++++|...|++..++ ++..+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5567778889999999999999999988765 45678888889999 999999999999998875 555666565
Q ss_pred HhhcC----CCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHH----c
Q 041741 513 SSCAK----LSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQ----N 584 (748)
Q Consensus 513 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~ 584 (748)
..+.. .+++++|...++...+.+ +...+..+...|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK----------------------------------YAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC----------------------------------CccHHHHHHHHHHcCCCcc
Confidence 55555 556666655555554432 44455556666666 6
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----CCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHh----cC
Q 041741 585 GYGDEAVRLYKDMIASGVKPDDITFVAILTACSH----SGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGR----AG 656 (748)
Q Consensus 585 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 656 (748)
+++++|+..+++..+.+ +...+..+...+.. .+++++|+..+++.. +. .+...+..++.+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~---~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKAC-DL---KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCCCc
Confidence 77777777777777754 34455566666655 778888888887773 22 234566777888887 88
Q ss_pred ChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC
Q 041741 657 HFHEAEMLIDEMPCKDDPVIWEVLLSSCRL----HANVRLAKRAAEELFRLDPKN 707 (748)
Q Consensus 657 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~ 707 (748)
++++|...+++.....++..+..+...+.. .+++++|...++++++.+|++
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 888888888776523336677777777777 888999999999999988843
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=2.1e-12 Score=129.00 Aligned_cols=244 Identities=11% Similarity=0.060 Sum_probs=195.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCC-chhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 041741 472 CWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSS-SFQGRQVHAQIEKDGYVNDIFVGSALIEMY 550 (748)
Q Consensus 472 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 550 (748)
.|..+...+...|++++|+..+++.+... +-+...|..+...+...|+ +++|...++.+.+.. +-+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 46667777788888888888888888653 3356677778888888886 888888888888875 34677888889999
Q ss_pred HhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CCChHHH-
Q 041741 551 CKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSH-SGLVDVG- 625 (748)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~A- 625 (748)
...|++++|...|+++.+ .+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 999999999999998763 578899999999999999999999999999964 4456788889888888 6665777
Q ss_pred ----HHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcC--ChHHHHHHHhhCCC-CCCHhHHHHHHHHHHhcC--------C
Q 041741 626 ----VEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAG--HFHEAEMLIDEMPC-KDDPVIWEVLLSSCRLHA--------N 689 (748)
Q Consensus 626 ----~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~ 689 (748)
+..+++.. .+.|+ ...|..++.++...| ++++|.+.++++.. +.++..+..++..+...| +
T Consensus 256 ~~~el~~~~~Al---~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMI---KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHH---HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 47777774 33455 667888888898888 68999999888753 345777888888887764 2
Q ss_pred -HHHHHHHHHHH-HhcCCCCCcchHHHhHHHhhc
Q 041741 690 -VRLAKRAAEEL-FRLDPKNSAPYSLLANIYSSL 721 (748)
Q Consensus 690 -~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 721 (748)
.++|..+++++ ++++|.....|..++..+...
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 58999999999 999999888888888877554
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=3.9e-13 Score=138.51 Aligned_cols=261 Identities=11% Similarity=-0.023 Sum_probs=180.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHhhcCCCCchhHHHHHHHHHHh----CC-CCchHHHHH
Q 041741 475 SMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQ----FSFATVLSSCAKLSSSFQGRQVHAQIEKD----GY-VNDIFVGSA 545 (748)
Q Consensus 475 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 545 (748)
.+...+...|++++|+..|++..+... .+. ..+..+...+...|+++.|...++...+. +. +.....+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 344556666777777777776665421 122 34556666666777777777777665543 11 223456667
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCC---------CCHHHHHHHHHHHHHcCC-----------------hhHHHHHHHHHHH
Q 041741 546 LIEMYCKCGDIYGARQFFDMMHG---------KNTVTWNEMIHGYAQNGY-----------------GDEAVRLYKDMIA 599 (748)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~ 599 (748)
+...|...|++++|...+++..+ ....++..+...+...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 77778888888888887776542 123467777888888888 8888888877654
Q ss_pred c----CCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCC-
Q 041741 600 S----GVKPD-DITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEMP- 669 (748)
Q Consensus 600 ~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 669 (748)
. +-.+. ..++..+...+...|++++|+..+++......-.++ ...+..++.+|...|++++|...+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11121 236777888888889999999888887533221222 2367788888999999999998887763
Q ss_pred ----CCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------cchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 670 ----CKD---DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS------APYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 670 ----~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
... ....+..+...+...|++++|...++++++..++.. .++..++.+|...|++++|.+++++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 145667778888889999999999999998765433 3788899999999999999999987755
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=6e-12 Score=119.62 Aligned_cols=205 Identities=11% Similarity=-0.020 Sum_probs=153.2
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHH
Q 041741 507 SFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQ 583 (748)
Q Consensus 507 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 583 (748)
.+..+...+...|+++.|...++.+.+.. +.+...+..+..++...|++++|.+.++++.+ .+...+..+...+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 34444555555566666666666555543 33456666777777778888888888776542 366778888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 041741 584 NGYGDEAVRLYKDMIASGVKPD-DITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAE 662 (748)
Q Consensus 584 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 662 (748)
.|++++|.++++++.+.+..|+ ...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999998887334454 4577788888889999999999999885322 234677888999999999999999
Q ss_pred HHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 041741 663 MLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLL 714 (748)
Q Consensus 663 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 714 (748)
..++++. .+.++..+..+...+...|++++|...++++++..|+++.....+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9998874 345677788888889999999999999999999999877655443
No 56
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=1.6e-12 Score=119.92 Aligned_cols=195 Identities=12% Similarity=-0.026 Sum_probs=98.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHH
Q 041741 469 DIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIE 548 (748)
Q Consensus 469 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 548 (748)
++..+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~---------- 71 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PR---------- 71 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------
Confidence 44455566666666666666666666666442 2234444444444555555555555555444443 22
Q ss_pred HHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 041741 549 MYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQN-----------GYGDEAVRLYKDMIASGVKPDDITFVAILTACS 617 (748)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 617 (748)
+...+..+..++... |++++|+..+++..+.. +-+...+..+..++.
T Consensus 72 ---------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 72 ---------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYA 129 (217)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ---------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 334444444444444 66666666666666542 223445556666666
Q ss_pred CCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHH
Q 041741 618 HSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKR 695 (748)
Q Consensus 618 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 695 (748)
..|++++|+..|++.. ... .+...+..++.+|...|++++|...+++.. .+.++..+..+...+...|++++|..
T Consensus 130 ~~g~~~~A~~~~~~al-~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 130 LLGERDKAEASLKQAL-ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HTTCHHHHHHHHHHHH-HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred HcCChHHHHHHHHHHH-hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 6666666666666653 222 445555666666666666666666666553 23345555566666666666666666
Q ss_pred HHHHH
Q 041741 696 AAEEL 700 (748)
Q Consensus 696 ~~~~~ 700 (748)
.++++
T Consensus 207 ~~~~~ 211 (217)
T 2pl2_A 207 AAALE 211 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 65543
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=8.2e-13 Score=135.86 Aligned_cols=288 Identities=10% Similarity=-0.064 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhCCC--C-C----cchHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHHH
Q 041741 440 YVASGLIGIYSKCQRNELAERVFHRIPE--L-D----IVCWNSMIAGLSLNSLDIEAFMFFKQMRQN----EMYP-TQFS 507 (748)
Q Consensus 440 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~ 507 (748)
..+......+...|++++|...|+++.+ + + ...+..+...+...|++++|...+++.... +..| ...+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344555566666666666666665542 1 1 123455555666666666666666654331 1111 1234
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHh----CCCC-chHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 041741 508 FATVLSSCAKLSSSFQGRQVHAQIEKD----GYVN-DIFVGSALIEMYCKCGD--------------------IYGARQF 562 (748)
Q Consensus 508 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~--------------------~~~A~~~ 562 (748)
+..+...+...|+++.|...+....+. +.++ ...++..+...|...|+ +++|.+.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 444555555566666666555554432 1000 12344555555555555 5555555
Q ss_pred hhhcCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCH----HHHHHHHHHhcCCCChHHHHHH
Q 041741 563 FDMMHG-----K----NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGV-KPDD----ITFVAILTACSHSGLVDVGVEI 628 (748)
Q Consensus 563 ~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~l~~~~~~~~~~~~A~~~ 628 (748)
+++..+ + ...++..+...+...|++++|...+++..+... .++. .++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 544321 1 122444555555555555555555555543210 0111 1444555555555555555555
Q ss_pred HHHhhhhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCC----HhHHHHHHHHHHhcCCHHHHHHH
Q 041741 629 FNSMQLDHGVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEMP----CKDD----PVIWEVLLSSCRLHANVRLAKRA 696 (748)
Q Consensus 629 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~a~~~ 696 (748)
+++......-.++ ..++..++.+|...|++++|...+++.. ..++ ...+..+...+...|++++|...
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5554321111111 2334455555555555555555555442 0011 23444444555555555555555
Q ss_pred HHHHHhcCCCCCc------chHHHhHHHhhcCChHHH
Q 041741 697 AEELFRLDPKNSA------PYSLLANIYSSLGRWDDL 727 (748)
Q Consensus 697 ~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A 727 (748)
+++++++.+.... ++..++.++...|+...+
T Consensus 330 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 330 AEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 5555555554421 344445555555544433
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=1.3e-12 Score=130.38 Aligned_cols=262 Identities=14% Similarity=0.019 Sum_probs=188.6
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHhhcCCCCchhHHHHHHHHHHh----CCCC-chHHHHH
Q 041741 475 SMIAGLSLNSLDIEAFMFFKQMRQNEMYPT----QFSFATVLSSCAKLSSSFQGRQVHAQIEKD----GYVN-DIFVGSA 545 (748)
Q Consensus 475 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ 545 (748)
.....+...|++++|...|++..+.. +.+ ...+..+...+...|+++.|...+....+. +..+ ...++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34455666777777777777776642 112 245556666777777777777777665433 2222 3556777
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHHcCC--------------------hhHHHHHHHH
Q 041741 546 LIEMYCKCGDIYGARQFFDMMHG-----KN----TVTWNEMIHGYAQNGY--------------------GDEAVRLYKD 596 (748)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~ 596 (748)
+...+...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 78888888888888888877542 22 3367778888888888 8888888887
Q ss_pred HHHc----CCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhh
Q 041741 597 MIAS----GVKPD-DITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDE 667 (748)
Q Consensus 597 m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 667 (748)
.... +..|. ..++..+...+...|++++|...+++......-.++ ...+..++.++...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 11121 246778888889999999999999887533222222 33677889999999999999999887
Q ss_pred CC----CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CcchHHHhHHHhhcCChHHHHHHHHH
Q 041741 668 MP----CKDD----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN------SAPYSLLANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 668 ~~----~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (748)
.. ..++ ...+..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|..++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 63 1112 4566777888999999999999999999986643 33788999999999999999999999
Q ss_pred HHhc
Q 041741 734 MSEN 737 (748)
Q Consensus 734 ~~~~ 737 (748)
+.+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8763
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=5.7e-12 Score=117.35 Aligned_cols=206 Identities=10% Similarity=-0.011 Sum_probs=155.9
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHH
Q 041741 506 FSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYA 582 (748)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 582 (748)
..+..+...+...|+++.|...++.+.+.. +.+...+..+..++...|++++|.+.++++.+ .+...+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344455555556666666666666655543 23455667777778888888888888876652 46677888888999
Q ss_pred Hc-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHH
Q 041741 583 QN-GYGDEAVRLYKDMIASGVKPD-DITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHE 660 (748)
Q Consensus 583 ~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 660 (748)
.. |++++|...++++.+.+..|+ ...+..+...+...|++++|+..++++.... +.+...+..++.++...|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHH
Confidence 99 999999999999888433444 4678888889999999999999999885321 2336778889999999999999
Q ss_pred HHHHHhhCC--CC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 041741 661 AEMLIDEMP--CK-DDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLL 714 (748)
Q Consensus 661 A~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 714 (748)
|...++++. .+ .++..+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999998875 34 5677777777778899999999999999999999887766554
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=1.1e-12 Score=126.76 Aligned_cols=219 Identities=12% Similarity=-0.027 Sum_probs=180.3
Q ss_pred hcCCCCchhHHHHHHHHHHhCC---CCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChh
Q 041741 515 CAKLSSSFQGRQVHAQIEKDGY---VNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGD 588 (748)
Q Consensus 515 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 588 (748)
....|++++|...++.+.+... +.+..++..+...+...|++++|...|+++.+ .+...|..++.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 4456889999999999988632 12567888999999999999999999998763 46889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 041741 589 EAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEM 668 (748)
Q Consensus 589 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 668 (748)
+|+..++++.+.. +.+...+..+...+...|++++|...++++.. ..|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999963 44567899999999999999999999999853 3465554555555667789999999999766
Q ss_pred C--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 669 P--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK----NSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 669 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
. .+++...+ .++..+...++.++|...++++++..|+ ++.++..++.+|...|++++|..+++++.+..
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 4 33444443 4677778888999999999999988774 36889999999999999999999999987654
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=6e-13 Score=138.63 Aligned_cols=191 Identities=10% Similarity=0.006 Sum_probs=160.9
Q ss_pred chHHHHHHHHHHHhcCCH-HHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041741 539 DIFVGSALIEMYCKCGDI-YGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILT 614 (748)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 614 (748)
+...+..+..++...|++ ++|.+.|++..+ .+...|..+..+|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 556666666777777777 777777776542 35778888999999999999999999999985 577788889999
Q ss_pred HhcCC---------CChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHHhhCC-CCC---
Q 041741 615 ACSHS---------GLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRA--------GHFHEAEMLIDEMP-CKD--- 672 (748)
Q Consensus 615 ~~~~~---------~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~-~~~--- 672 (748)
.+... |++++|+..++++... .|+ ...+..++.+|... |++++|...+++.. ..|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 99999 9999999999988532 344 67788899999988 99999999999885 334
Q ss_pred -CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 673 -DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 673 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
++..|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.++++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999999999999999999999999999999999999766543
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=5e-12 Score=136.69 Aligned_cols=163 Identities=16% Similarity=0.164 Sum_probs=140.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHH
Q 041741 570 NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCM 648 (748)
Q Consensus 570 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l 648 (748)
+..+|+.|...+...|++++|+..|++.++.. +-+...+..+..+|...|++++|+..|++.. .+.|+ ...+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al---~l~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHH
Confidence 35678888888999999999999999988852 3345688888999999999999999999885 33455 6778899
Q ss_pred HHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHH
Q 041741 649 IDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDD 726 (748)
Q Consensus 649 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 726 (748)
+.+|...|++++|.+.+++.. .+.+...+..++..+...|++++|+..++++++++|+++.++..|+.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998875 344678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 041741 727 LRAVRELMSE 736 (748)
Q Consensus 727 A~~~~~~~~~ 736 (748)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=5.8e-12 Score=129.48 Aligned_cols=293 Identities=8% Similarity=-0.080 Sum_probs=196.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-----hhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHH
Q 041741 371 SWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDR-----TTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGL 445 (748)
Q Consensus 371 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 445 (748)
.+......+...|++++|+..+++..+. .|+. ..+..+...+...|+++.|...+..+.......
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------- 80 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-------- 80 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--------
Confidence 3445556667777777777777777665 2221 233334444444555555554444443221100
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHhhcCCCC
Q 041741 446 IGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEM-YPT----QFSFATVLSSCAKLSS 520 (748)
Q Consensus 446 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~ 520 (748)
++. ......+..+...+...|++++|...+++...... .++ ..++..+...+...|+
T Consensus 81 -------~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 81 -------GDQ-----------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp -------TCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccc-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 000 00133567788889999999999999988765311 112 3467788888999999
Q ss_pred --------------------chhHHHHHHHHHHh----CCCC-chHHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC
Q 041741 521 --------------------SFQGRQVHAQIEKD----GYVN-DIFVGSALIEMYCKCGDIYGARQFFDMMHG-----KN 570 (748)
Q Consensus 521 --------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 570 (748)
++.|...+....+. +..+ ...++..+...|...|++++|...+++..+ ++
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 222 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC
Confidence 99999998876653 2122 345778888999999999999999988763 22
Q ss_pred ----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC
Q 041741 571 ----TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGV-KPD----DITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI 641 (748)
Q Consensus 571 ----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 641 (748)
..++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-.++
T Consensus 223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 302 (406)
T 3sf4_A 223 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 23788899999999999999999999876311 111 357788899999999999999999988543222222
Q ss_pred ----hhHHHHHHHHHHhcCChHHHHHHHhhCC-----CC--C-CHhHHHHHHHHHHhcCCHH
Q 041741 642 ----LDHYTCMIDCLGRAGHFHEAEMLIDEMP-----CK--D-DPVIWEVLLSSCRLHANVR 691 (748)
Q Consensus 642 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~--~-~~~~~~~l~~~~~~~~~~~ 691 (748)
...+..++.+|...|++++|...+++.. .. + ...++..+...+...|+..
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 4567789999999999999999998763 11 1 1334455555566666544
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=1e-11 Score=111.36 Aligned_cols=167 Identities=10% Similarity=0.020 Sum_probs=143.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041741 539 DIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTA 615 (748)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 615 (748)
++.+|..+...|.+.|++++|.+.|++..+ .++..+..+..++...|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 566788899999999999999999998763 477889999999999999999999999998863 4456677888888
Q ss_pred hcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHH
Q 041741 616 CSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLA 693 (748)
Q Consensus 616 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 693 (748)
+...++++.|...+++.... .+.+...+..++.+|.+.|++++|.+.+++.. .+.++..+..++..+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 89999999999999988532 23346778899999999999999999999885 455788899999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 041741 694 KRAAEELFRLDPKNS 708 (748)
Q Consensus 694 ~~~~~~~~~~~p~~~ 708 (748)
...++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999763
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=2.2e-12 Score=127.17 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhhcCC-----------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------CCC
Q 041741 541 FVGSALIEMYCKCGDIYGARQFFDMMHG-----------KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIAS------GVK 603 (748)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~ 603 (748)
..+..+...|...|++++|...+++... .....+..+...+...|++++|...++++.+. +-.
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3344445555555555555555544321 12345566666677777777777777766653 112
Q ss_pred CC-HHHHHHHHHHhcCCCChHHHHHHHHHhhhhh-----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-------
Q 041741 604 PD-DITFVAILTACSHSGLVDVGVEIFNSMQLDH-----GVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP------- 669 (748)
Q Consensus 604 p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------- 669 (748)
|+ ...+..+...+...|++++|+.+++++.... +..|. ...+..++.+|...|++++|...++++.
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 22 2456677777777788888887777764321 11222 3456677777888888888887776653
Q ss_pred ---CCC-CHh------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 670 ---CKD-DPV------IWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 670 ---~~~-~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
..+ ... .+......+...+.+.++...++.+....|.++.++..++.+|...|++++|.+++++..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 011 111 1222222344455666777788888888888888899999999999999999999988765
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=2.7e-11 Score=112.95 Aligned_cols=165 Identities=8% Similarity=-0.043 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHH
Q 041741 572 VTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMID 650 (748)
Q Consensus 572 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~ 650 (748)
..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..+++.. ...|+ ...+..++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI---KKNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH---HhCcchHHHHHHHHH
Confidence 33444444444444444444444444443211333344344444444444444444444442 12222 333444444
Q ss_pred HHHhcCChHHHHHHHhhCC--CCCCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCcchHHHhHHHh
Q 041741 651 CLGRAGHFHEAEMLIDEMP--CKDDP-------VIWEVLLSSCRLHANVRLAKRAAEELFRLDPK--NSAPYSLLANIYS 719 (748)
Q Consensus 651 ~~~~~g~~~~A~~~~~~~~--~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 719 (748)
+|...|++++|...+++.. .+.++ ..+..+...+...|++++|...++++++.+|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 4444444444444444442 11222 22334444444455555555555555555554 4455555555555
Q ss_pred hcCCh---------------------------HHHHHHHHHHHhcCC
Q 041741 720 SLGRW---------------------------DDLRAVRELMSENCI 739 (748)
Q Consensus 720 ~~g~~---------------------------~~A~~~~~~~~~~~~ 739 (748)
..|+. ++|+.++++..+..+
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 55544 999999998876543
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=2e-11 Score=109.58 Aligned_cols=158 Identities=16% Similarity=0.055 Sum_probs=86.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcC
Q 041741 577 MIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAG 656 (748)
Q Consensus 577 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 656 (748)
++..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..++.++...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 3334444444444444444443321 223334444444444444444444444444211 1122344445555555555
Q ss_pred ChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 657 HFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 657 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
++++|...++++. .+.++..+..++..+...|++++|...++++++..|+++.++..++.+|...|++++|..+++++
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555543 23445566666666777777777777777777777777777777777777777777777777766
Q ss_pred Hhc
Q 041741 735 SEN 737 (748)
Q Consensus 735 ~~~ 737 (748)
.+.
T Consensus 171 ~~~ 173 (186)
T 3as5_A 171 NEL 173 (186)
T ss_dssp HHH
T ss_pred HHc
Confidence 553
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=9.9e-11 Score=118.94 Aligned_cols=234 Identities=10% Similarity=-0.043 Sum_probs=109.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCC-CchHHHHHHHHH
Q 041741 476 MIAGLSLNSLDIEAFMFFKQMRQNEM-YPT----QFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYV-NDIFVGSALIEM 549 (748)
Q Consensus 476 li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 549 (748)
....+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+....+.... ++..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------- 180 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN-------- 180 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH--------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch--------
Confidence 34455667777777777777664310 111 223444444555555555555554444332000 0000
Q ss_pred HHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCH----HHHHHHHHHhcCCCChHH
Q 041741 550 YCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGV-KPDD----ITFVAILTACSHSGLVDV 624 (748)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~l~~~~~~~~~~~~ 624 (748)
.....+++.+..+|...|++++|+..+++..+... .++. .++..+...|...|++++
T Consensus 181 ------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 181 ------------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp ------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 00112344444455555555555555544443200 0111 244455555555555555
Q ss_pred HHHHHHHhhhhh---CCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC------CCCC-HhHHHHHHHHHHhcCC---H
Q 041741 625 GVEIFNSMQLDH---GVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP------CKDD-PVIWEVLLSSCRLHAN---V 690 (748)
Q Consensus 625 A~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~-~~~~~~l~~~~~~~~~---~ 690 (748)
|+..+++..... +..|. ..++..++.++.+.|++++|...+++.. ..|. ...+..+...+...|+ .
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 555555543210 12122 3445555556666666666665555442 0111 1123334445555555 5
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 691 RLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 691 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
++|...+++. ...|....++..++.+|...|++++|..++++..+
T Consensus 323 ~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 323 QGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555543 22233344566666777777777777776666654
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.31 E-value=1.2e-11 Score=127.24 Aligned_cols=270 Identities=10% Similarity=-0.045 Sum_probs=171.7
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCC
Q 041741 409 IILSSCAAMGILESGKQVHAASLKTASHIDN---YVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSL 485 (748)
Q Consensus 409 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 485 (748)
.+...+...|+++.|...++.+++....... .++..+..+|...|++++|...+++..+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------- 115 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL----------------- 115 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------------
Confidence 3345566667777777777776665433211 23444555555555555555554433210
Q ss_pred chHHHHHHHHHHHCCCCC-CHHHHHHHHHhhcCCCCchhHHHHHHHHHHh----CC-CCchHHHHHHHHHHHhcCC----
Q 041741 486 DIEAFMFFKQMRQNEMYP-TQFSFATVLSSCAKLSSSFQGRQVHAQIEKD----GY-VNDIFVGSALIEMYCKCGD---- 555 (748)
Q Consensus 486 ~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~---- 555 (748)
. ...+..| ....+..+...+...|+++.|...+....+. +- +....++..+...|...|+
T Consensus 116 -------~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 185 (411)
T 4a1s_A 116 -------A---KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185 (411)
T ss_dssp -------H---HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------H---HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccc
Confidence 0 0001111 2234444555555556666665555554433 11 1134456667777777788
Q ss_pred -------------HHHHHHHhhhcCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHH
Q 041741 556 -------------IYGARQFFDMMHG-----K----NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGV-KPD----DIT 608 (748)
Q Consensus 556 -------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~ 608 (748)
+++|.+.+++..+ . ....+..+...+...|++++|+..+++..+... .++ ..+
T Consensus 186 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (411)
T 4a1s_A 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265 (411)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 7777777766532 1 234677788889999999999999988876311 012 126
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCC-C---CC----CHhH
Q 041741 609 FVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEMP-C---KD----DPVI 676 (748)
Q Consensus 609 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~----~~~~ 676 (748)
+..+...+...|++++|...+++......-..+ ...+..++.++...|++++|...+++.. . .+ ....
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 778888999999999999999887533221122 4567788999999999999999998774 1 11 1346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 677 WEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 677 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
+..+...+...|++++|...+++++++.+
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 77788889999999999999999999877
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=2.4e-11 Score=126.49 Aligned_cols=180 Identities=10% Similarity=-0.091 Sum_probs=157.6
Q ss_pred CHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHH
Q 041741 555 DIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYG-DEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFN 630 (748)
Q Consensus 555 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 630 (748)
.++++...++.... .+...+..+...+...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|+..|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566666665442 4778899999999999999 99999999999963 4456789999999999999999999999
Q ss_pred HhhhhhCCCCChhHHHHHHHHHHhc---------CChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhc--------CCHH
Q 041741 631 SMQLDHGVEPILDHYTCMIDCLGRA---------GHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLH--------ANVR 691 (748)
Q Consensus 631 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------~~~~ 691 (748)
+.. ...|+...+..++.+|... |++++|...+++.. .+.++..|..+...+... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 985 4568888899999999999 99999999999885 455688999999999888 9999
Q ss_pred HHHHHHHHHHhcCC---CCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 692 LAKRAAEELFRLDP---KNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 692 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
+|...++++++++| +++.++..++.+|...|++++|.+.|+++.+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 999999999999999999999999999987644
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=8e-11 Score=119.64 Aligned_cols=189 Identities=9% Similarity=-0.036 Sum_probs=143.5
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC-----HHHHH
Q 041741 546 LIEMYCKCGDIYGARQFFDMMHG-----K----NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGV-KPD-----DITFV 610 (748)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-----~~~~~ 610 (748)
....+...|++++|...+++..+ + ...++..+...+...|+++.|+..+++..+... .++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556677888888877776543 2 235678888899999999999999988776311 111 24788
Q ss_pred HHHHHhcCCCChHHHHHHHHHhhhhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCC------CC-C-CHhHHH
Q 041741 611 AILTACSHSGLVDVGVEIFNSMQLDHGVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEMP------CK-D-DPVIWE 678 (748)
Q Consensus 611 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-~-~~~~~~ 678 (748)
.+...|...|++++|+..+++......-.++ ..++..++.+|...|++++|...+++.. .. | .+.++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988543222222 2468889999999999999999988774 12 3 356678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCCcchHHHhHHHhhcCC---hHHHHHHHHHH
Q 041741 679 VLLSSCRLHANVRLAKRAAEELFRLDP-----KNSAPYSLLANIYSSLGR---WDDLRAVRELM 734 (748)
Q Consensus 679 ~l~~~~~~~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 734 (748)
.++..+...|++++|...+++++++.+ .....+..++.+|...|+ .++|..++++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 888899999999999999999999843 233346789999999999 77888877754
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=8e-11 Score=109.72 Aligned_cols=206 Identities=10% Similarity=0.018 Sum_probs=154.2
Q ss_pred CCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHH
Q 041741 503 PTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIH 579 (748)
Q Consensus 503 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 579 (748)
.++..+......+...|++++|...++...+...+++...+..+..++...|++++|.+.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456777788888889999999999999988887556777777788889999999999999987653 35667888889
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC---hhHHHHHH
Q 041741 580 GYAQNGYGDEAVRLYKDMIASGVKPDD-------ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI---LDHYTCMI 649 (748)
Q Consensus 580 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~ 649 (748)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..++++. ...|+ ...+..++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 9999999999999999988853 3334 347777788888899999999998885 34554 45677788
Q ss_pred HHHHhcCCh--HHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHh
Q 041741 650 DCLGRAGHF--HEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYS 719 (748)
Q Consensus 650 ~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 719 (748)
.+|...|+. ++|..+. ..++..+.... ....+.+++|...++++++++|+++.+...++.+..
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888766543 2222211 22233333222 344567899999999999999999888888877654
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=2.4e-10 Score=111.85 Aligned_cols=220 Identities=8% Similarity=0.003 Sum_probs=162.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHhhc-------CCCCc-------hhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 041741 487 IEAFMFFKQMRQNEMYPTQFSFATVLSSCA-------KLSSS-------FQGRQVHAQIEKDGYVNDIFVGSALIEMYCK 552 (748)
Q Consensus 487 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 552 (748)
++|...|++..... +.+...|..+...+. ..|++ ++|..+++...+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888898888752 345566666666654 35776 7888888888774223466788888888888
Q ss_pred cCCHHHHHHHhhhcCC--C-CHH-HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cCCCChHHHHH
Q 041741 553 CGDIYGARQFFDMMHG--K-NTV-TWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTAC-SHSGLVDVGVE 627 (748)
Q Consensus 553 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~A~~ 627 (748)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++.++.+ +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988764 3 343 78888888888899999999999988853 33444444333332 23688999999
Q ss_pred HHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC----CC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041741 628 IFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPC----KD--DPVIWEVLLSSCRLHANVRLAKRAAEELF 701 (748)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 701 (748)
+|++..... +-+...+..++..+.+.|++++|..+|++... +| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998885443 22467788888888888999999999888752 33 35678888888888899999999999999
Q ss_pred hcCCCCCcc
Q 041741 702 RLDPKNSAP 710 (748)
Q Consensus 702 ~~~p~~~~~ 710 (748)
+..|+++..
T Consensus 269 ~~~p~~~~~ 277 (308)
T 2ond_A 269 TAFREEYEG 277 (308)
T ss_dssp HHTTTTTSS
T ss_pred HHccccccc
Confidence 998876544
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.26 E-value=3.4e-08 Score=105.44 Aligned_cols=414 Identities=10% Similarity=0.022 Sum_probs=252.4
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCC---hhHHHHHHHHHHhcC-CCCChhhH
Q 041741 269 EADLHLSNSLLDMYAKNGDMDSAEVIFSNLPE--R-SVVSWNVMIAGYGQKYQ---STKAIELLQRMKSCG-FEPDEVTS 341 (748)
Q Consensus 269 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~g-~~p~~~~~ 341 (748)
+.|...+..++..+...+.++.+..+|+.+.. | ....|...+..-.+.++ ++.+.++|++..... ..|+...|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 46788888888888888888888888887765 2 33456677777777777 888888888887754 23677777
Q ss_pred HHHHHHHHhcCCH--------HHHHHHhccCC------C-CCcchHHHHHHHHHc---------cCCHHHHHHHHHHHHH
Q 041741 342 INMLVACVRSGDI--------KTGREMFDSMP------S-PSVSSWNAMLSSYSQ---------SENHKEAIKLFREMQF 397 (748)
Q Consensus 342 ~~ll~~~~~~~~~--------~~a~~~~~~~~------~-~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~ 397 (748)
...+....+.++. +...++|+... . .+...|...+..... +++++.+..+|+....
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7666655554443 22334554322 1 223456665554332 2345667777777664
Q ss_pred cCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHh-------hCCC---
Q 041741 398 RGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFH-------RIPE--- 467 (748)
Q Consensus 398 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~--- 467 (748)
.....-..+|..... +.+.-+...+..++.... .+++.|...+. .+..
T Consensus 223 iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQ-WEQDVNQLTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp SCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHH-HHHhcCcchHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhhccc
Confidence 211111122211111 111001111111111100 01111111111 1110
Q ss_pred -----------C--C------cchHHHHHHHHHhCCC-------chHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCc
Q 041741 468 -----------L--D------IVCWNSMIAGLSLNSL-------DIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSS 521 (748)
Q Consensus 468 -----------~--~------~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 521 (748)
| + ...|...+.---..+. .+.+..+|++.... ++-....|.....-+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 0 0124444433222221 12345667777664 233556666666666677888
Q ss_pred hhHH-HHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC-------------CC------------HHHHH
Q 041741 522 FQGR-QVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG-------------KN------------TVTWN 575 (748)
Q Consensus 522 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~ 575 (748)
+.|. .+++..... .+.+...+-..+....+.|++++|.++|+.+.. |+ ...|.
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8886 999988764 355677777888888899999999999987753 21 23577
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcC-CCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHH
Q 041741 576 EMIHGYAQNGYGDEAVRLYKDMIAS-GVKPDDITFVAILTACSH-SGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLG 653 (748)
Q Consensus 576 ~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 653 (748)
..+....+.|+.+.|..+|.++++. + .+....|...+..-.+ .++.+.|..+|+...+..+ -+...+...++...
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHH
Confidence 7788888889999999999999885 2 1222333322222223 3568999999999865543 34455668888888
Q ss_pred hcCChHHHHHHHhhCC-CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 041741 654 RAGHFHEAEMLIDEMP-CKD----DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA 709 (748)
Q Consensus 654 ~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 709 (748)
..|+.+.|..+|++.. ..| ....|..++..-...|+.+.+..+.+++.+..|+++.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 8999999999999876 223 3467888888888899999999999999999997654
No 75
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.25 E-value=2.9e-10 Score=113.24 Aligned_cols=151 Identities=11% Similarity=-0.029 Sum_probs=104.7
Q ss_pred HHHHHHHhhhcCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcCCCC
Q 041741 556 IYGARQFFDMMHG-----K----NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGV-KPD----DITFVAILTACSHSGL 621 (748)
Q Consensus 556 ~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~ 621 (748)
+++|.+.+++... + ....+..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 6666666654431 1 234567777888888888888888888765310 011 1367777888888899
Q ss_pred hHHHHHHHHHhhhhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCC----HhHHHHHHHHHHhcCC
Q 041741 622 VDVGVEIFNSMQLDHGVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEMP----CKDD----PVIWEVLLSSCRLHAN 689 (748)
Q Consensus 622 ~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~ 689 (748)
+++|...+++......-.++ ...+..++.++...|++++|...+++.. ..++ ...+..+...+...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999988877433221222 4567788899999999999999888763 1111 3466778888999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 041741 690 VRLAKRAAEELFRLDPK 706 (748)
Q Consensus 690 ~~~a~~~~~~~~~~~p~ 706 (748)
+++|...+++++++.++
T Consensus 319 ~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 319 HDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 99999999999998774
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.25 E-value=1.9e-09 Score=109.08 Aligned_cols=192 Identities=14% Similarity=0.012 Sum_probs=90.9
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCC----------C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--C--CHHH
Q 041741 544 SALIEMYCKCGDIYGARQFFDMMHG----------K-NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVK--P--DDIT 608 (748)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~ 608 (748)
..+...+...|++++|...+++... | ....+..+...+...|++++|...+++..+.... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3444455555555555555554321 1 1123344555555566666666666555543111 0 1234
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHH-----HHHHHHHhcCChHHHHHHHhhCC-CCCC-----HhHH
Q 041741 609 FVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYT-----CMIDCLGRAGHFHEAEMLIDEMP-CKDD-----PVIW 677 (748)
Q Consensus 609 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~ 677 (748)
+..+...+...|++++|...+++.............+. ..+..+...|++++|...+++.. ..|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 44555555556666666666655532211111111111 12233455666666666665553 1111 1123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------cchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 678 EVLLSSCRLHANVRLAKRAAEELFRLDPKNS------APYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 678 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
..+...+...|++++|...+++++...+... .++..++.++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444555556666666666666555433211 244555666666666666666655543
No 77
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=1.8e-09 Score=105.56 Aligned_cols=213 Identities=10% Similarity=0.001 Sum_probs=127.3
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHh-------cCCH-------HHHHHHhhhcCC---C-CHHHHHHHHHHHHH
Q 041741 522 FQGRQVHAQIEKDGYVNDIFVGSALIEMYCK-------CGDI-------YGARQFFDMMHG---K-NTVTWNEMIHGYAQ 583 (748)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 583 (748)
++|...|+.+.... +.++..|..++..+.. .|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 35555666655542 3355556555555542 3664 677777765443 2 44566677777777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH-H-HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHH-hcCChHH
Q 041741 584 NGYGDEAVRLYKDMIASGVKPDD-I-TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLG-RAGHFHE 660 (748)
Q Consensus 584 ~~~~~~a~~~~~~m~~~~~~p~~-~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 660 (748)
.|++++|..+|+++++. .|+. . .|..++..+.+.|++++|..+|++..... +++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777763 4432 2 56666666666777777777777664211 122334433333322 2577777
Q ss_pred HHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 661 AEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRL---DPK-NSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 661 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
|..+|++.. .+.++..|..++..+...|++++|..+++++++. .|+ ....+..++..+...|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777776663 3335666666666666777777777777777774 342 3445666677777777777777777766
Q ss_pred HhcCC
Q 041741 735 SENCI 739 (748)
Q Consensus 735 ~~~~~ 739 (748)
.+..+
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 65443
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=5e-10 Score=100.32 Aligned_cols=170 Identities=12% Similarity=-0.004 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 041741 540 IFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTAC 616 (748)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 616 (748)
...+..+...+...|++++|...++.+.+ .+...+..++..+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778888999999999999998875 467788999999999999999999999999863 45677888899999
Q ss_pred cCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHH
Q 041741 617 SHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAK 694 (748)
Q Consensus 617 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 694 (748)
...|++++|...++++... .+.+...+..++.++...|++++|...++++. .+.++..+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998533 23456778889999999999999999999875 4456788889999999999999999
Q ss_pred HHHHHHHhcCCCCCcchH
Q 041741 695 RAAEELFRLDPKNSAPYS 712 (748)
Q Consensus 695 ~~~~~~~~~~p~~~~~~~ 712 (748)
..++++++..|+++....
T Consensus 165 ~~~~~~~~~~~~~~~~~~ 182 (186)
T 3as5_A 165 PHFKKANELDEGASVELA 182 (186)
T ss_dssp HHHHHHHHHHHCCCGGGG
T ss_pred HHHHHHHHcCCCchhhHh
Confidence 999999999998765543
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=9.9e-09 Score=109.58 Aligned_cols=418 Identities=9% Similarity=-0.018 Sum_probs=251.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---HHHHHHHhccCCC-----CCcchHH
Q 041741 302 SVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGD---IKTGREMFDSMPS-----PSVSSWN 373 (748)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~-----~~~~~~~ 373 (748)
|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ .+.+..+|+.... |++..|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 5567777888777777888888888887765 33445556666666666666 7777777766653 4555555
Q ss_pred HHHHHHHccCCH--------HHHHHHHHHHHH-cCC-CCC-HhhHHHHHHHhh---------ccCChHHHHHHHHHHHhh
Q 041741 374 AMLSSYSQSENH--------KEAIKLFREMQF-RGV-KPD-RTTLAIILSSCA---------AMGILESGKQVHAASLKT 433 (748)
Q Consensus 374 ~ll~~~~~~~~~--------~~a~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~ 433 (748)
..+....+.++. +.+.++|+.... .|. .|+ ...+...+.-.. ..++++.+..++..++..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 555544443332 223355554433 344 443 234444333221 122345555666666543
Q ss_pred cCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH--CCC----C-----
Q 041741 434 ASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQ--NEM----Y----- 502 (748)
Q Consensus 434 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~----~----- 502 (748)
.......++......-...+. ..+.+++.+ ...+++.|...+.++.. .++ +
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred ccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 222222222221111000000 001111100 00122233344433321 111 0
Q ss_pred ------C-----C---HHHHHHHHHhhcCCC-------CchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH-
Q 041741 503 ------P-----T---QFSFATVLSSCAKLS-------SSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGAR- 560 (748)
Q Consensus 503 ------p-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~- 560 (748)
| + ...|...+.---..+ ...++..+|++.... .+....+|...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 012222222211111 123355667777665 3447788888888888899999996
Q ss_pred HHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHh
Q 041741 561 QFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGV---------KPD------------DITFVAILTAC 616 (748)
Q Consensus 561 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~l~~~~ 616 (748)
.+|++... ++...|-..+....+.|++++|..+|+++++... .|+ ...|...+...
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 99987764 3566677888888999999999999999987410 142 23577777777
Q ss_pred cCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhc-CChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHH
Q 041741 617 SHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRA-GHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLA 693 (748)
Q Consensus 617 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 693 (748)
.+.|..+.|..+|.++....+ .+....|...+..-.+. ++.+.|.++|+... .+.++..|..++......|+.+.|
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHH
Confidence 788999999999999854311 12334455444444454 45899999999885 556788888888888889999999
Q ss_pred HHHHHHHHhcCCC---CCcchHHHhHHHhhcCChHHHHHHHHHHHhcCCC
Q 041741 694 KRAAEELFRLDPK---NSAPYSLLANIYSSLGRWDDLRAVRELMSENCIV 740 (748)
Q Consensus 694 ~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 740 (748)
..+|++++...|+ ....+......-...|+.+.+..+.+++.+.-+.
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999998883 3456777777888889999999999999876653
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=3.5e-11 Score=118.45 Aligned_cols=235 Identities=10% Similarity=-0.013 Sum_probs=142.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHh------CC-C
Q 041741 472 CWNSMIAGLSLNSLDIEAFMFFKQMRQN-------EMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKD------GY-V 537 (748)
Q Consensus 472 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~ 537 (748)
++..+...+...|++++|...++++... ..+.....+..+...+...|+++.|...+....+. +. +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3445555555666666666666655542 11223345556666666677777777766666543 21 2
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHhhhcCC----------C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------
Q 041741 538 NDIFVGSALIEMYCKCGDIYGARQFFDMMHG----------K-NTVTWNEMIHGYAQNGYGDEAVRLYKDMIAS------ 600 (748)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------ 600 (748)
.....+..+...|...|++++|...++++.+ + ....+..+...+...|++++|+.+++++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2355666777777778888888777776542 1 2345777788888888888888888888764
Q ss_pred CCCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhh------CCCCC-hh------HHHHHHHHHHhcCChHHHHHHHh
Q 041741 601 GVKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDH------GVEPI-LD------HYTCMIDCLGRAGHFHEAEMLID 666 (748)
Q Consensus 601 ~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~-~~------~~~~l~~~~~~~g~~~~A~~~~~ 666 (748)
+..|+. .++..+...+...|++++|...++++.... ...+. .. .+..+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 223333 467788888888999999999988875321 11121 11 12223333445555666666666
Q ss_pred hCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041741 667 EMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 667 ~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 706 (748)
... ..| ....+..++..+...|++++|...+++++++.|+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 664 223 4567888888999999999999999999998874
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=2.8e-09 Score=107.90 Aligned_cols=162 Identities=14% Similarity=0.059 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcCCCChHHHHHHHHHhhhhh---CCCCChhH
Q 041741 573 TWNEMIHGYAQNGYGDEAVRLYKDMIAS----GVKP-DDITFVAILTACSHSGLVDVGVEIFNSMQLDH---GVEPILDH 644 (748)
Q Consensus 573 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 644 (748)
+++.+..+|...|++++|.+.+++..+. +-.+ ...++..+...|...|++++|+..+++..... +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444444555555555555555444431 1000 01244455555555555555555555543210 11111344
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC----C--CCC-HhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCcchHHH
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMP----C--KDD-PVIWEVLLSSCRLHAN---VRLAKRAAEELFRLDPKNSAPYSLL 714 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l 714 (748)
+..++.++.+.|++++|...+++.. . .|. ...+..+...+...++ ..+|...+++ ....|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHH
Confidence 5555666666666666665555442 0 111 1223333334444555 4455555444 11222233455666
Q ss_pred hHHHhhcCChHHHHHHHHHHH
Q 041741 715 ANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~ 735 (748)
+.+|...|++++|..++++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 677777777777776666554
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=3.3e-10 Score=114.71 Aligned_cols=304 Identities=7% Similarity=-0.045 Sum_probs=211.5
Q ss_pred CCCHhhHHHHHHHh--hccCChHHHHHHHHHHHhhcCC--ch--hHHHHHHHHHH--HhcCChHHHH---------HHHh
Q 041741 401 KPDRTTLAIILSSC--AAMGILESGKQVHAASLKTASH--ID--NYVASGLIGIY--SKCQRNELAE---------RVFH 463 (748)
Q Consensus 401 ~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~l~~~~--~~~~~~~~a~---------~~~~ 463 (748)
.|...+-..+-.-+ ...++++.|..+.+.+.+.... .+ ...+-.++..- ...+....+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 44444444444444 7899999999999987664322 23 33334443321 1112222222 3333
Q ss_pred hCC---CCCcc-----hHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHhhcCCCCchhHHHHHHH
Q 041741 464 RIP---ELDIV-----CWNSMIAGLSLNSLDIEAFMFFKQMRQNEM-YPT----QFSFATVLSSCAKLSSSFQGRQVHAQ 530 (748)
Q Consensus 464 ~~~---~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 530 (748)
.+. .+... .+......+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+..
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 332 21111 122334556789999999999999886421 122 34677888899999999999999998
Q ss_pred HHHh--CC---CC-chHHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHHcCChhHHHHHHH
Q 041741 531 IEKD--GY---VN-DIFVGSALIEMYCKCGDIYGARQFFDMMHG-----KN----TVTWNEMIHGYAQNGYGDEAVRLYK 595 (748)
Q Consensus 531 ~~~~--~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 595 (748)
..+. .. .+ ...+++.+..+|...|++++|.+.|++..+ ++ ..++..+..+|...|++++|+..++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8764 11 11 255778899999999999999999987653 22 3467889999999999999999999
Q ss_pred HHHH-----cCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC---hhHHHHHHHHHHhcCC---hHHHHHH
Q 041741 596 DMIA-----SGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI---LDHYTCMIDCLGRAGH---FHEAEML 664 (748)
Q Consensus 596 ~m~~-----~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~ 664 (748)
+..+ .. +....++..+...+...|++++|...+++......-.++ ...+..+...+...|+ +++|...
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9887 42 333567889999999999999999999998543332222 3345667777888888 8999999
Q ss_pred HhhCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 665 IDEMPCKDD-PVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 665 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
+++....|+ ...+..++..+...|++++|...++++++...
T Consensus 326 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 998653333 45666788889999999999999999987643
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=1.4e-09 Score=103.55 Aligned_cols=184 Identities=10% Similarity=-0.044 Sum_probs=106.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-C---HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC-HHHHH
Q 041741 539 DIFVGSALIEMYCKCGDIYGARQFFDMMHG--K-N---TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGV-KPD-DITFV 610 (748)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~ 610 (748)
++..+..+...+.+.|++++|...|+.+.+ | + ...+..+..++...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555556666666677777666666553 2 2 44556666666666666666666666666421 111 23445
Q ss_pred HHHHHhcC--------CCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHH
Q 041741 611 AILTACSH--------SGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLS 682 (748)
Q Consensus 611 ~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 682 (748)
.+..++.. .|++++|+..|+++.....-.+ .....+.......++. ...+..++.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE--LVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT--THHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch--hHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55555555 6666666666666643321111 1111111100000000 011345566
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC---cchHHHhHHHhhc----------CChHHHHHHHHHHHhcCC
Q 041741 683 SCRLHANVRLAKRAAEELFRLDPKNS---APYSLLANIYSSL----------GRWDDLRAVRELMSENCI 739 (748)
Q Consensus 683 ~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 739 (748)
.+...|++++|...++++++..|+++ .++..++.+|... |++++|...|+++.+..+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 77788888888888888888888744 3678888888766 778888888888766443
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.12 E-value=2.6e-09 Score=98.94 Aligned_cols=183 Identities=10% Similarity=-0.014 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHH
Q 041741 540 IFVGSALIEMYCKCGDIYGARQFFDMMHG--KN----TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD----ITF 609 (748)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~ 609 (748)
+..+..+...+.+.|++++|...|+.+.+ |+ ...+..++.++...|++++|+..|+++.+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 33445556667777777777777777653 32 245666777777777777777777777764 2332 133
Q ss_pred HHHHHHhcC------------------CCChHHHHHHHHHhhhhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 041741 610 VAILTACSH------------------SGLVDVGVEIFNSMQLDHGVEPIL-DHYTCMIDCLGRAGHFHEAEMLIDEMPC 670 (748)
Q Consensus 610 ~~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 670 (748)
..+..++.. .|++++|+..|+++... .|+. ......... +......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH--------
Confidence 334444332 34455555555554321 2221 111110000 0000000
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---cchHHHhHHHhhcCChHHHHHHHHHHHhcCCCCC
Q 041741 671 KDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS---APYSLLANIYSSLGRWDDLRAVRELMSENCIVKD 742 (748)
Q Consensus 671 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 742 (748)
......++..+...|++++|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...++...
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 00112455668889999999999999999999876 5799999999999999999999999888766543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=8.7e-10 Score=106.56 Aligned_cols=221 Identities=15% Similarity=0.138 Sum_probs=155.3
Q ss_pred cCCCCchhHHHHHHHHHHh-------CCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC-----------CCHHHHHHH
Q 041741 516 AKLSSSFQGRQVHAQIEKD-------GYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG-----------KNTVTWNEM 577 (748)
Q Consensus 516 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 577 (748)
...|+++.|..++++..+. ..+....++..+...|...|++++|...++++.+ ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888888888887653 2223567788899999999999999999887652 134578889
Q ss_pred HHHHHHcCChhHHHHHHHHHHHc------CCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHhhhhh-----CCCCC-hhH
Q 041741 578 IHGYAQNGYGDEAVRLYKDMIAS------GVKPD-DITFVAILTACSHSGLVDVGVEIFNSMQLDH-----GVEPI-LDH 644 (748)
Q Consensus 578 ~~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~-~~~ 644 (748)
..++...|++++|...++++.+. .-.|+ ..++..+...+...|++++|+.+++++.... +..|+ ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998874 11232 3578888999999999999999999885331 11232 556
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC----------CCCC-HhHHHHHHHHHHhcC------CHHHHHHHHHHHHhcCCCC
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMP----------CKDD-PVIWEVLLSSCRLHA------NVRLAKRAAEELFRLDPKN 707 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~p~~ 707 (748)
+..++.+|...|++++|...++++. ..+. ...+..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7789999999999999999988763 1222 233333333333322 2333444444333344556
Q ss_pred CcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 708 SAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 708 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
+.++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999998765
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.07 E-value=8.9e-10 Score=119.17 Aligned_cols=164 Identities=13% Similarity=0.078 Sum_probs=141.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041741 539 DIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTA 615 (748)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 615 (748)
+...++.+..+|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 567788899999999999999999998763 467889999999999999999999999999853 3345789999999
Q ss_pred hcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHH
Q 041741 616 CSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRL 692 (748)
Q Consensus 616 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 692 (748)
+...|++++|++.|++.. .+.|+ ...+..++.+|...|++++|++.+++.. .+.++..+..++..+...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl---~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAI---QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999885 33455 6788999999999999999999999885 34468889999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 041741 693 AKRAAEELFRLDPK 706 (748)
Q Consensus 693 a~~~~~~~~~~~p~ 706 (748)
|.+.+++++++.|+
T Consensus 164 A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 164 YDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh
Confidence 99999999987654
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=6.5e-09 Score=97.86 Aligned_cols=243 Identities=8% Similarity=-0.034 Sum_probs=157.6
Q ss_pred HHhcCChHHHHHHHhhCCCCCcch-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHH
Q 041741 449 YSKCQRNELAERVFHRIPELDIVC-WNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQV 527 (748)
Q Consensus 449 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 527 (748)
..-.|.+..++.-...+...+... -.-+.++|...|++... ..-.|....+..+...+. .+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~-~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLD-TK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHT-TT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhc-cc----HHHH
Confidence 445788888877666554333332 22234677777776532 123344444444444432 22 6667
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 041741 528 HAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG-----KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGV 602 (748)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 602 (748)
++++...+ .++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 77666554 44455556778888888999999999887643 24566777888888999999999999998874
Q ss_pred CC-----CHHHHHHHHHHh--cC--CCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---
Q 041741 603 KP-----DDITFVAILTAC--SH--SGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPC--- 670 (748)
Q Consensus 603 ~p-----~~~~~~~l~~~~--~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 670 (748)
.| +..+...+..++ .. .+++.+|..+|+++.. -.|+..+...+..++.+.|++++|.+.++.+..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 66 355566666553 33 3388889999988842 235423333344478888999999988876531
Q ss_pred ---------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHH
Q 041741 671 ---------KDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSL 713 (748)
Q Consensus 671 ---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 713 (748)
+.++.++..++......|+ .|.+.++++.+.+|++|.+...
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 3356666566666556676 7788888888888877655443
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=3e-09 Score=101.35 Aligned_cols=206 Identities=9% Similarity=-0.012 Sum_probs=149.2
Q ss_pred CCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCC--chHHHHHHHHHHHhcCCHHHHHHHhhhcCC--C----CHHH
Q 041741 502 YPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVN--DIFVGSALIEMYCKCGDIYGARQFFDMMHG--K----NTVT 573 (748)
Q Consensus 502 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~ 573 (748)
+.+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+...+ | ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3456677778888999999999999999998874221 167788899999999999999999998763 3 2456
Q ss_pred HHHHHHHHHH--------cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhH
Q 041741 574 WNEMIHGYAQ--------NGYGDEAVRLYKDMIASGVKPDDI-TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDH 644 (748)
Q Consensus 574 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 644 (748)
+..+..++.. .|++++|+..|+++++. .|+.. ....+ ..+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7788889988 99999999999999986 35432 22111 111111000 0122
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC-CCC----CHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMP-CKD----DPVIWEVLLSSCRLH----------ANVRLAKRAAEELFRLDPKNSA 709 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~ 709 (748)
+..++.+|.+.|++++|...++++. ..| .+..+..++.++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 5567888999999999999988874 223 245666677777655 8999999999999999998864
Q ss_pred ---chHHHhHHHhhcCChHHHH
Q 041741 710 ---PYSLLANIYSSLGRWDDLR 728 (748)
Q Consensus 710 ---~~~~l~~~~~~~g~~~~A~ 728 (748)
+...+..++...|+++++.
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 4556666666666655443
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=6.6e-11 Score=101.40 Aligned_cols=141 Identities=9% Similarity=-0.084 Sum_probs=94.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhc
Q 041741 578 IHGYAQNGYGDEAVRLYKDMIASGVKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRA 655 (748)
Q Consensus 578 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 655 (748)
...+...|++++|+..+++.... .|+. ..+..+...|...|++++|++.|++... +.|+ ...+..++.+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc
Confidence 34444556667777777665552 3333 3455666677777777777777777642 2343 56677777777777
Q ss_pred CChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCCcchHHHhHHHhhcCC
Q 041741 656 GHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKR-AAEELFRLDPKNSAPYSLLANIYSSLGR 723 (748)
Q Consensus 656 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 723 (748)
|++++|...+++.. .+.++..+..++..+...|++++|.. .++++++++|+++.++...+.++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777777764 33457777777778888887765444 4688888888888888888888877775
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=3.3e-09 Score=102.27 Aligned_cols=175 Identities=10% Similarity=-0.030 Sum_probs=141.8
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhC
Q 041741 558 GARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHG 637 (748)
Q Consensus 558 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 637 (748)
.....+......+...+..+...+...|++++|...|+++.+.. +-+...+..+...+...|++++|...++++. .
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~---~ 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIP---L 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC---G
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCc---h
Confidence 34444444444455667778888999999999999999999863 4455788889999999999999999999885 3
Q ss_pred CCCChhHHH-HHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CcchH
Q 041741 638 VEPILDHYT-CMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN--SAPYS 712 (748)
Q Consensus 638 ~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~ 712 (748)
..|+..... .....+...++.++|...+++.. .+.++..+..+...+...|++++|...++++++.+|++ +.++.
T Consensus 180 ~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 180 QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 345543322 33444677888899999888875 45578899999999999999999999999999999987 88999
Q ss_pred HHhHHHhhcCChHHHHHHHHHHHh
Q 041741 713 LLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.++.++...|+.++|...|++...
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999987653
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=1.1e-09 Score=106.14 Aligned_cols=200 Identities=11% Similarity=-0.015 Sum_probs=141.5
Q ss_pred CchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHHcCChhHH
Q 041741 520 SSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG-----KN----TVTWNEMIHGYAQNGYGDEA 590 (748)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 590 (748)
+++.|...+... ...|...|++++|.+.|.+... .+ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 4457778888888888876542 11 45788899999999999999
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHhcCC-CChHHHHHHHHHhhhhhCCCCC----hhHHHHHHHHHHhcCChHH
Q 041741 591 VRLYKDMIASGV---KPD--DITFVAILTACSHS-GLVDVGVEIFNSMQLDHGVEPI----LDHYTCMIDCLGRAGHFHE 660 (748)
Q Consensus 591 ~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 660 (748)
+..+++..+... .+. ..++..+...|... |++++|+..|++......-..+ ..++..++.++.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998876311 111 24688888899886 9999999999988543221111 3467888999999999999
Q ss_pred HHHHHhhCC-CCCC-H-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-----hHHHhHHHh--hcCCh
Q 041741 661 AEMLIDEMP-CKDD-P-------VIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAP-----YSLLANIYS--SLGRW 724 (748)
Q Consensus 661 A~~~~~~~~-~~~~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 724 (748)
|...+++.. ..|+ + ..+..++.++...|++++|...++++++++|+.+.. +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999998874 2232 1 146677778889999999999999999999986653 344555554 45778
Q ss_pred HHHHHHHHHH
Q 041741 725 DDLRAVRELM 734 (748)
Q Consensus 725 ~~A~~~~~~~ 734 (748)
++|+..|+.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888888753
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=2.6e-08 Score=93.78 Aligned_cols=241 Identities=8% Similarity=-0.065 Sum_probs=146.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 041741 477 IAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDI 556 (748)
Q Consensus 477 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (748)
|+-..-.|.+..++.-...+ ...........+.+++...|++.... ...|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc--
Confidence 34455667777776633222 11122233334556666666665321 12223223333333 33322
Q ss_pred HHHHHHhhhcC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 041741 557 YGARQFFDMMH---GKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKP-DDITFVAILTACSHSGLVDVGVEIFNSM 632 (748)
Q Consensus 557 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 632 (748)
|...|++.. .++..++..+..++...|++++|++++.+.++.|..+ +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556666544 2455556677788888888888888888877654312 3456777778888888888888888888
Q ss_pred hhhhCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041741 633 QLDHGVEP-----ILDHYTCMIDC--LGRAG--HFHEAEMLIDEMP-CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFR 702 (748)
Q Consensus 633 ~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 702 (748)
. . ..| +..+...++.+ ....| ++.+|..+|+++. ..|+......+..++...|++++|+..++.+.+
T Consensus 163 ~-~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 T-N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H-H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred H-h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 2 345 24444555544 33334 7888888888875 334422223333367778888888888887776
Q ss_pred c----------CCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 703 L----------DPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 703 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
. +|+|+.++..++.+....|+ +|.++++++++..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 5 47788888788777777887 77888888766543
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=2.3e-09 Score=94.82 Aligned_cols=158 Identities=9% Similarity=0.009 Sum_probs=107.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHH-HH
Q 041741 575 NEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDC-LG 653 (748)
Q Consensus 575 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 653 (748)
..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|+..++++... .|+......+... +.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 344555666666777776666665532 334455666666667777777777777666422 2232222222211 12
Q ss_pred hcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CcchHHHhHHHhhcCChHHHHH
Q 041741 654 RAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN--SAPYSLLANIYSSLGRWDDLRA 729 (748)
Q Consensus 654 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~ 729 (748)
..+...+|...+++.. .+.++..+..+...+...|++++|...++++++.+|+. +.++..++.++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2233345666776664 34468888899999999999999999999999999975 5589999999999999999999
Q ss_pred HHHHHHh
Q 041741 730 VRELMSE 736 (748)
Q Consensus 730 ~~~~~~~ 736 (748)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998654
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=1e-09 Score=119.59 Aligned_cols=148 Identities=13% Similarity=0.069 Sum_probs=67.6
Q ss_pred cCCCCchhHHHHHHHHH--------HhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHc
Q 041741 516 AKLSSSFQGRQVHAQIE--------KDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQN 584 (748)
Q Consensus 516 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 584 (748)
...|++++|.+.++... +. .+.+...+..+..++...|++++|.+.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44555555555555544 11 122334444444455555555555555544432 2344444455555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHH
Q 041741 585 GYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEM 663 (748)
Q Consensus 585 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 663 (748)
|++++|+..|+++.+.. +-+...+..+..++...|++++ +..|+++.. ..|+ ...+..++.++.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555554431 1122344444444455555555 444444421 1222 3344444555555555555555
Q ss_pred HHhhCC
Q 041741 664 LIDEMP 669 (748)
Q Consensus 664 ~~~~~~ 669 (748)
.+++..
T Consensus 556 ~~~~al 561 (681)
T 2pzi_A 556 TLDEVP 561 (681)
T ss_dssp HHHTSC
T ss_pred HHHhhc
Confidence 554443
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.00 E-value=5.9e-10 Score=95.40 Aligned_cols=124 Identities=12% Similarity=-0.024 Sum_probs=103.0
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcC
Q 041741 612 ILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHA 688 (748)
Q Consensus 612 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 688 (748)
|...+...|++++|+..++... ...|+ ...+..++.+|.+.|++++|.+.+++.. .+.++..|..++..+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4566778899999999998874 33444 3445679999999999999999999885 4557899999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHH-HHHHHhcC
Q 041741 689 NVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAV-RELMSENC 738 (748)
Q Consensus 689 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~ 738 (748)
++++|...++++++++|+++.++..++.+|...|++++|.+. ++++.+-.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999887765 57765543
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=6.6e-09 Score=87.18 Aligned_cols=127 Identities=15% Similarity=0.136 Sum_probs=77.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhc
Q 041741 610 VAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLH 687 (748)
Q Consensus 610 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 687 (748)
..+...+...|++++|..+++++... .+.+...+..++..+...|++++|...++++. .+.++..+..++..+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444444444555555554444211 11223344445555555555555555555543 233455666666777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 688 ANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 688 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
|++++|...++++++..|+++.++..++.++...|++++|...++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 778888888888777777777777778888888888888888887766543
No 97
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.98 E-value=3.6e-08 Score=99.60 Aligned_cols=195 Identities=13% Similarity=0.072 Sum_probs=141.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCC-----CCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCC--CC-
Q 041741 542 VGSALIEMYCKCGDIYGARQFFDMMHG-----KNT----VTWNEMIHGYAQNGYGDEAVRLYKDMIAS----GVK--PD- 605 (748)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~--p~- 605 (748)
.+..+...+...|++++|.+.+++... .+. .++..+...+...|++++|...+++..+. +.. |.
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 344556667777888888877776542 222 33567788899999999999999988763 222 32
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCC-CC--ChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCC-CHhHHH
Q 041741 606 DITFVAILTACSHSGLVDVGVEIFNSMQLDHGV-EP--ILDHYTCMIDCLGRAGHFHEAEMLIDEMP---CKD-DPVIWE 678 (748)
Q Consensus 606 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-~~~~~~ 678 (748)
...+..+...+...|++++|...+++......- .+ ....+..++.++...|++++|...+++.. ..+ .+..+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 245677888899999999999999987532211 11 23467788999999999999999998763 111 212222
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----chHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 679 -----VLLSSCRLHANVRLAKRAAEELFRLDPKNSA----PYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 679 -----~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
..+..+...|++++|...+++++...|.++. .+..++.++...|++++|...++++.+
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233477899999999999999987775432 357889999999999999999998754
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=5.2e-09 Score=101.28 Aligned_cols=171 Identities=8% Similarity=-0.101 Sum_probs=137.0
Q ss_pred CHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhcCCCChHHHHHHH
Q 041741 555 DIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIAS----GVKPD-DITFVAILTACSHSGLVDVGVEIF 629 (748)
Q Consensus 555 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~ 629 (748)
++++|...|+.. +..|...|++++|+..|++..+. |-+++ ..+|..+..+|...|++++|+..+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 488888887664 66788899999999999988763 22222 357899999999999999999999
Q ss_pred HHhhhhhCCCCC----hhHHHHHHHHHHhc-CChHHHHHHHhhCC-CCC---C----HhHHHHHHHHHHhcCCHHHHHHH
Q 041741 630 NSMQLDHGVEPI----LDHYTCMIDCLGRA-GHFHEAEMLIDEMP-CKD---D----PVIWEVLLSSCRLHANVRLAKRA 696 (748)
Q Consensus 630 ~~~~~~~~~~~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-~~~---~----~~~~~~l~~~~~~~~~~~~a~~~ 696 (748)
++......-..+ ..++..++.+|... |++++|...+++.. ..| + ..++..++..+...|++++|...
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 988543221122 35688899999996 99999999998874 111 1 35677888899999999999999
Q ss_pred HHHHHhcCCCCCc-------chHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 697 AEELFRLDPKNSA-------PYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 697 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
++++++..|+++. .+..++.++...|++++|...+++..+
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999998765 367889999999999999999998543
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.98 E-value=2e-09 Score=91.43 Aligned_cols=102 Identities=13% Similarity=0.024 Sum_probs=90.1
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHH
Q 041741 637 GVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSL 713 (748)
Q Consensus 637 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 713 (748)
.+.|+ ...+..++..+.+.|++++|...|++.. .+.++..|..+..++...|++++|...++++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44554 5567788899999999999999999885 45578899999999999999999999999999999999999999
Q ss_pred HhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 714 LANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 714 l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
++.+|...|++++|...|+++.+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987644
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=3.5e-08 Score=90.14 Aligned_cols=162 Identities=7% Similarity=-0.072 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC----ChHHHHHHHHHhhhhhCCCCChhH
Q 041741 569 KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSG----LVDVGVEIFNSMQLDHGVEPILDH 644 (748)
Q Consensus 569 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~ 644 (748)
.++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|+.+|++.. +. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~-~~---g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV-EA---GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH-HT---TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH-HC---CCHHH
Confidence 466677777777888888888888888888764 45566677777776 5 7888888888873 32 24566
Q ss_pred HHHHHHHHHh----cCChHHHHHHHhhCC-CCCC---HhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcchH
Q 041741 645 YTCMIDCLGR----AGHFHEAEMLIDEMP-CKDD---PVIWEVLLSSCRL----HANVRLAKRAAEELFRLDPKNSAPYS 712 (748)
Q Consensus 645 ~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 712 (748)
+..++.+|.. .+++++|..++++.. ..|. +..+..|...+.. .+|+++|...++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888876 788999999988876 3332 7778888888877 77899999999999888 66788999
Q ss_pred HHhHHHhhc-C-----ChHHHHHHHHHHHhcCC
Q 041741 713 LLANIYSSL-G-----RWDDLRAVRELMSENCI 739 (748)
Q Consensus 713 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 739 (748)
.|+.+|... | +.++|..+|++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999998754 3 89999999998877654
No 101
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=1.4e-08 Score=98.05 Aligned_cols=201 Identities=9% Similarity=-0.010 Sum_probs=132.5
Q ss_pred CHHHHHHHHHhhcCCCCchhHHHHHHHHHHh------CCCC-chHHHHHHHHHHHhcCCHHHHHHHhhhcCC-------C
Q 041741 504 TQFSFATVLSSCAKLSSSFQGRQVHAQIEKD------GYVN-DIFVGSALIEMYCKCGDIYGARQFFDMMHG-------K 569 (748)
Q Consensus 504 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~ 569 (748)
...++..+...+...|+++.|...+..+.+. +-.| ...++..+..+|...|++++|.+.+++... +
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3445666777777777777777777776654 2222 455677778888888888888888776542 1
Q ss_pred ----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------CCCCC-HHHHHHHHHHhcCCCChHHHHHHHHHhhhhh--
Q 041741 570 ----NTVTWNEMIHGYAQNGYGDEAVRLYKDMIAS------GVKPD-DITFVAILTACSHSGLVDVGVEIFNSMQLDH-- 636 (748)
Q Consensus 570 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 636 (748)
...++..+...+...|++++|..+++++.+. +-.|+ ..++..+...+...|++++|..+++++....
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2456777888889999999999999888874 11333 3567888889999999999999998875321
Q ss_pred ----CCCCC-hhHHHHHHHHHHhcCC------hHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041741 637 ----GVEPI-LDHYTCMIDCLGRAGH------FHEAEMLIDEMP-CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRL 703 (748)
Q Consensus 637 ----~~~~~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 703 (748)
...+. ...+..+...+...+. +.++...++... ..| ....+..++..+...|++++|...++++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 3344444444444333 344444444444 222 3556778888899999999999999999875
Q ss_pred C
Q 041741 704 D 704 (748)
Q Consensus 704 ~ 704 (748)
.
T Consensus 282 ~ 282 (283)
T 3edt_B 282 R 282 (283)
T ss_dssp C
T ss_pred h
Confidence 3
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=5.5e-09 Score=112.07 Aligned_cols=160 Identities=10% Similarity=-0.001 Sum_probs=122.9
Q ss_pred cCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHH
Q 041741 553 CGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIF 629 (748)
Q Consensus 553 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 629 (748)
.|++++|.+.+++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999988764 357789999999999999999999999999863 445678889999999999999999999
Q ss_pred HHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 041741 630 NSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLH---ANVRLAKRAAEELFRLD 704 (748)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 704 (748)
++.... .+.+...+..++.+|.+.|++++|.+.+++.. .+.++..+..+...+... |+.++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 988532 12346788899999999999999999998875 445678888888899899 99999999999999999
Q ss_pred CCCCcchHHHh
Q 041741 705 PKNSAPYSLLA 715 (748)
Q Consensus 705 p~~~~~~~~l~ 715 (748)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888888887
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=1.2e-08 Score=93.09 Aligned_cols=154 Identities=12% Similarity=0.053 Sum_probs=110.9
Q ss_pred HHHHhcCCHHHHHHHhhhcCC--C-CHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 041741 548 EMYCKCGDIYGARQFFDMMHG--K-NTVTWNE----------------MIHGYAQNGYGDEAVRLYKDMIASGVKPDDIT 608 (748)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 608 (748)
..+...|++++|...|+...+ | +...|.. +..++...|++++|+..+++.++.. +-+...
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 90 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDC 90 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHH
Confidence 344455566666665555442 2 2233444 8889999999999999999999963 445678
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCC--hHHHHHHHhhCCCCCCHh--HHHHHHHH
Q 041741 609 FVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGH--FHEAEMLIDEMPCKDDPV--IWEVLLSS 683 (748)
Q Consensus 609 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~--~~~~l~~~ 683 (748)
+..+..++...|++++|+..|+++.. +.|+ ...+..++.+|...|. .+.+...++... .|++. .+.....+
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 89999999999999999999999853 3454 6778888888876654 455666676665 44443 34445566
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC
Q 041741 684 CRLHANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 684 ~~~~~~~~~a~~~~~~~~~~~p~ 706 (748)
+...|++++|+..++++++++|+
T Consensus 167 ~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCC
Confidence 77789999999999999999995
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.91 E-value=4.9e-09 Score=86.33 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcC
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLG 722 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 722 (748)
+...+..|.+.|++++|+..|++.. .+.++..|..++.++...|++++|+..++++++++|+++.++..+|.+|...|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 4444555555555555555554442 22334445555555555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHHh
Q 041741 723 RWDDLRAVRELMSE 736 (748)
Q Consensus 723 ~~~~A~~~~~~~~~ 736 (748)
++++|.+.|++..+
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555433
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=3.7e-08 Score=82.44 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHH
Q 041741 573 TWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCL 652 (748)
Q Consensus 573 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 652 (748)
.|..++..+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45667777888888888888888887753 345567777777888888888888888887422 133456677788888
Q ss_pred HhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041741 653 GRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 653 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 706 (748)
...|++++|...++++. .+.++..+..++..+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888888774 3446777888888888999999999999999988885
No 106
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=4.7e-09 Score=89.38 Aligned_cols=95 Identities=13% Similarity=0.008 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHh
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYS 719 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 719 (748)
...+..++..+.+.|++++|...+++.. .+.++..|..+..++...|++++|...++++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3445556666777777777777776653 33456666666667777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHh
Q 041741 720 SLGRWDDLRAVRELMSE 736 (748)
Q Consensus 720 ~~g~~~~A~~~~~~~~~ 736 (748)
..|++++|...|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776655
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=4.5e-08 Score=95.48 Aligned_cols=218 Identities=12% Similarity=0.001 Sum_probs=151.4
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcC-CCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 041741 483 NSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAK-LSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQ 561 (748)
Q Consensus 483 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 561 (748)
.|++++|.+++++..+... .. +.. .++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3556677777776654311 10 122 46777777666553 456777888888888
Q ss_pred HhhhcCC-----CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CCC--HHHHHHHHHHhcCCCChHHHHH
Q 041741 562 FFDMMHG-----KN----TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGV---KPD--DITFVAILTACSHSGLVDVGVE 627 (748)
Q Consensus 562 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~~~~~~A~~ 627 (748)
.|.+..+ .+ ..+|+.+..+|...|++++|+..+++..+.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8776542 11 34788888999999999999999998776311 222 2467888888888 99999999
Q ss_pred HHHHhhhhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCC-C---CCC----HhHHHHHHHHHHhcCCHHHHHH
Q 041741 628 IFNSMQLDHGVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEMP-C---KDD----PVIWEVLLSSCRLHANVRLAKR 695 (748)
Q Consensus 628 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~~~~~~a~~ 695 (748)
.+++......-..+ ..++..++.+|.+.|++++|...+++.. . .+. ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987533211111 4567889999999999999999998874 1 111 2245556666777899999999
Q ss_pred HHHHHHhcCCCCCcc-----hHHHhHHHhhcCChHHHHH
Q 041741 696 AAEELFRLDPKNSAP-----YSLLANIYSSLGRWDDLRA 729 (748)
Q Consensus 696 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 729 (748)
.+++++ ++|..... +..++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99976544 44455545 5677766655
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.86 E-value=1.1e-08 Score=93.24 Aligned_cols=161 Identities=12% Similarity=0.028 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHH----------------HHHHhcCCCChHHHHHHHHHhhh
Q 041741 572 VTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD-ITFVA----------------ILTACSHSGLVDVGVEIFNSMQL 634 (748)
Q Consensus 572 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~ 634 (748)
..+...+..+...|++++|+..|++..+. .|+. ..+.. +..++...|++++|+..+++...
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445567788999999999999999985 5654 45666 88899999999999999999853
Q ss_pred hhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCc
Q 041741 635 DHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHA--NVRLAKRAAEELFRLDPKNSA 709 (748)
Q Consensus 635 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~ 709 (748)
..| +...+..++.++...|++++|...+++.. .+.++..+..++..+...| +.+.+...+++++...| ...
T Consensus 83 ---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 158 (208)
T 3urz_A 83 ---KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQY 158 (208)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHH
T ss_pred ---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhH
Confidence 345 47788899999999999999999999885 4456888888888876554 34556667777654333 223
Q ss_pred chHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 710 PYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
.+..++.++...|++++|...|+++.+..
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 56778999999999999999999875543
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=1.4e-08 Score=99.15 Aligned_cols=196 Identities=6% Similarity=-0.127 Sum_probs=148.3
Q ss_pred CCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041741 518 LSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDM 597 (748)
Q Consensus 518 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 597 (748)
.|++++|.+++++..+.... + + +...++++.|...|.. .+..|...|++++|...+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 46677888888877764211 1 0 1114788888887765 467788999999999999988
Q ss_pred HHcCC---CCC--HHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhC
Q 041741 598 IASGV---KPD--DITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEM 668 (748)
Q Consensus 598 ~~~~~---~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 668 (748)
.+... .+. ..+|..+...|...|++++|+..+++......-..+ ..++..++.+|.. |++++|...+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 76311 111 247888899999999999999999987533211111 3567788999988 9999999999877
Q ss_pred C-C-----CC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------chHHHhHHHhhcCChHHHHHHHHHH
Q 041741 669 P-C-----KD--DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA------PYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 669 ~-~-----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
. . .+ ....+..+...+...|++++|...+++++++.|++.. .+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 1 11 1456778888999999999999999999999876543 6777888999999999999999986
Q ss_pred H
Q 041741 735 S 735 (748)
Q Consensus 735 ~ 735 (748)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 5
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=4.4e-08 Score=105.02 Aligned_cols=150 Identities=15% Similarity=0.060 Sum_probs=77.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHH
Q 041741 585 GYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEM 663 (748)
Q Consensus 585 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 663 (748)
|++++|+..++++.+.. +.+...+..+...+...|++++|+..+++.. ...|+ ...+..++.+|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666655532 2234455566666666666666666666553 22333 4455566666666666666666
Q ss_pred HHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc---CChHHHHHHHHHHHhcC
Q 041741 664 LIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSL---GRWDDLRAVRELMSENC 738 (748)
Q Consensus 664 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 738 (748)
.+++.. .+.++..+..+...+...|++++|.+.++++++.+|+++.++..++.++... |++++|.+.++++.+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 666553 2334555566666666666666666666666666666666666666666666 66666666666655443
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=4.5e-08 Score=89.73 Aligned_cols=127 Identities=7% Similarity=-0.091 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHH
Q 041741 573 TWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCL 652 (748)
Q Consensus 573 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 652 (748)
.+..+...+...|++++|+..+++. +.|+...+..+...+...|++++|+..+++..... +.+...+..++.+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 4455666777777777777777765 25566677777777777777777777777764221 23355666777777
Q ss_pred HhcCChHHHHHHHhhCC--CCCCH----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 653 GRAGHFHEAEMLIDEMP--CKDDP----------------VIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 653 ~~~g~~~~A~~~~~~~~--~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
...|++++|...+++.. .+.+. ..+..++..+...|++++|...++++++..|
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 77777777777776663 11122 5566666677777777777777777777777
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=1.3e-08 Score=83.68 Aligned_cols=115 Identities=15% Similarity=0.029 Sum_probs=93.2
Q ss_pred CCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHH
Q 041741 602 VKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWE 678 (748)
Q Consensus 602 ~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 678 (748)
+.|+. ..+...+..+.+.|++++|+..|++.... .+.+...+..++.+|.+.|++++|+..+++.. .+.++..|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44544 45777788888888888888888887522 12346778888899999999999999888875 455688899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHH
Q 041741 679 VLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIY 718 (748)
Q Consensus 679 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 718 (748)
.++.++...|++++|...++++++++|+++.++..|+.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999998888887664
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=8e-07 Score=80.98 Aligned_cols=173 Identities=9% Similarity=-0.065 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC-CCHHHHHHHHHHHHHcC----ChhHHHHHHHHH
Q 041741 523 QGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG-KNTVTWNEMIHGYAQNG----YGDEAVRLYKDM 597 (748)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m 597 (748)
+|..+|....+.| ++..+..+...|...+++++|.+.|++..+ .++..+..|...|.. + ++++|++.|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4556666666654 566777788888888999999999987664 577788888888887 6 899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHhcC----CCChHHHHHHHHHhhhhhCCCCC---hhHHHHHHHHHHh----cCChHHHHHHHh
Q 041741 598 IASGVKPDDITFVAILTACSH----SGLVDVGVEIFNSMQLDHGVEPI---LDHYTCMIDCLGR----AGHFHEAEMLID 666 (748)
Q Consensus 598 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~ 666 (748)
.+.| +...+..|...|.. .+++++|+.+|++.. . ..|+ ...+..|+.+|.. .+++++|..+++
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~--~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA-R--DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-S--STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-H--cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8865 55667777777776 889999999999884 3 3342 6778889999988 889999999999
Q ss_pred hCC-CCCCHhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 041741 667 EMP-CKDDPVIWEVLLSSCRLH-A-----NVRLAKRAAEELFRLDP 705 (748)
Q Consensus 667 ~~~-~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p 705 (748)
+.. .++++..+..+...|... | |+++|...++++.+..+
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 885 335666777777776543 3 89999999999998865
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=4.3e-07 Score=87.89 Aligned_cols=161 Identities=6% Similarity=-0.056 Sum_probs=120.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCC-CCCHH----HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC----hhHHH
Q 041741 576 EMIHGYAQNGYGDEAVRLYKDMIASGV-KPDDI----TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI----LDHYT 646 (748)
Q Consensus 576 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ 646 (748)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.....-.++ ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999998887421 22211 2334666777888999999999988542222233 23688
Q ss_pred HHHHHHHhcCChHHHHHHHhhCC-----CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------Ccch
Q 041741 647 CMIDCLGRAGHFHEAEMLIDEMP-----CKDD----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN------SAPY 711 (748)
Q Consensus 647 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 711 (748)
.++.+|...|++++|...++++. .+.+ ..++..++..+...|++++|...+++++++.++. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998888764 1112 3467788888999999999999999999976543 4578
Q ss_pred HHHhHHHhhcCC-hHHHHHHHHHHHh
Q 041741 712 SLLANIYSSLGR-WDDLRAVRELMSE 736 (748)
Q Consensus 712 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 736 (748)
..+|.+|...|+ +++|.++++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999998764
No 115
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=9.2e-08 Score=104.25 Aligned_cols=182 Identities=10% Similarity=-0.001 Sum_probs=144.2
Q ss_pred HhCCCchHHHHHHHHHH--------HCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 041741 481 SLNSLDIEAFMFFKQMR--------QNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCK 552 (748)
Q Consensus 481 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 552 (748)
...|++++|++.+++.. .. .+.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999987 32 23355677788888999999999999999988864 3467788888999999
Q ss_pred cCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHH
Q 041741 553 CGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIF 629 (748)
Q Consensus 553 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 629 (748)
.|++++|.+.|++..+ .+...|..+..++...|++++ +..|+++.+.+ +.+...+..+..++...|++++|+..|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998763 467788899999999999999 99999999863 445578888999999999999999999
Q ss_pred HHhhhhhCCCCC-hhHHHHHHHHHHhcCC--------hHHHHHHHhhCC
Q 041741 630 NSMQLDHGVEPI-LDHYTCMIDCLGRAGH--------FHEAEMLIDEMP 669 (748)
Q Consensus 630 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~ 669 (748)
+++. ...|+ ...+..++.++...|+ +++|.+.+..+.
T Consensus 558 ~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 558 DEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred Hhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9885 45676 5567777888766444 667777777765
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.77 E-value=1.4e-07 Score=91.24 Aligned_cols=164 Identities=5% Similarity=-0.065 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC----hh
Q 041741 573 TWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDD-----ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI----LD 643 (748)
Q Consensus 573 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~ 643 (748)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|+..+++......-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566778888888888888887775322111 12344556667888999999988877432211112 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC-----CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----C
Q 041741 644 HYTCMIDCLGRAGHFHEAEMLIDEMP-----CKDD----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK--N----S 708 (748)
Q Consensus 644 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~----~ 708 (748)
++..++.+|...|++++|...+++.. .+.+ ..++..++..+...|++++|...+++++++.++ + +
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67788899999999999998887763 1121 257778888899999999999999999987542 1 4
Q ss_pred cchHHHhHHHhhcCChHHH-HHHHHHHHh
Q 041741 709 APYSLLANIYSSLGRWDDL-RAVRELMSE 736 (748)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 736 (748)
.++..+|.+|...|++++| ..++++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5688899999999999999 777877643
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=2.4e-07 Score=85.54 Aligned_cols=186 Identities=10% Similarity=-0.036 Sum_probs=133.8
Q ss_pred CHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCC--chHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCH----HHHH
Q 041741 504 TQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVN--DIFVGSALIEMYCKCGDIYGARQFFDMMHG--KNT----VTWN 575 (748)
Q Consensus 504 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~ 575 (748)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+++.+ |+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455566777889999999999999999874322 246778889999999999999999998763 322 2455
Q ss_pred HHHHHHHH------------------cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCChHHHHHHHHHhhhhh
Q 041741 576 EMIHGYAQ------------------NGYGDEAVRLYKDMIASGVKPDDI-TFVAILTACSHSGLVDVGVEIFNSMQLDH 636 (748)
Q Consensus 576 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 636 (748)
.+..++.. .|++++|+..|+++++. .|+.. .+..... ...+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHH----
Confidence 56666654 57899999999999985 45542 2221111 01111111
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-CH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 041741 637 GVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-DP---VIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAP 710 (748)
Q Consensus 637 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 710 (748)
......++..|.+.|++++|...++++. ..| ++ ..+..++.++...|++++|...++.+....|++...
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0112357888999999999999999885 233 33 567788889999999999999999999999976543
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.75 E-value=5e-08 Score=93.91 Aligned_cols=135 Identities=9% Similarity=0.002 Sum_probs=112.4
Q ss_pred CCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHH
Q 041741 603 KPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVL 680 (748)
Q Consensus 603 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l 680 (748)
+.+...+..+...+...|++++|+..++++... .|+ ...+..++.++.+.|++++|...++++. ..|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 444456778888889999999999999998533 444 6778899999999999999999999996 45665544433
Q ss_pred HH-HHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCCC
Q 041741 681 LS-SCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCIV 740 (748)
Q Consensus 681 ~~-~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 740 (748)
.. .+...++.+.|...++++++.+|+++.++..++.+|...|++++|+..|+++.+..+.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 33 3667788889999999999999999999999999999999999999999998876543
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.75 E-value=1.1e-06 Score=83.88 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=71.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChH--HHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCC-----
Q 041741 585 GYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVD--VGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGH----- 657 (748)
Q Consensus 585 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 657 (748)
+++++++..++++.+.. +-+...|..-...+...|.++ ++++.++++... ..-+...|..-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 34455555555555432 333344444444444444444 555555554311 11223334433344444343
Q ss_pred -hHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC---CCCCcchHHHhHHHhhcCChHHHHHH
Q 041741 658 -FHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHAN-VRLAKRAAEELFRLD---PKNSAPYSLLANIYSSLGRWDDLRAV 730 (748)
Q Consensus 658 -~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 730 (748)
++++++.++++. .+.+...|..+...+...|+ .+......+++++++ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 555555555443 33345555555555555444 233444555555444 55555666666666666666666666
Q ss_pred HHHHH
Q 041741 731 RELMS 735 (748)
Q Consensus 731 ~~~~~ 735 (748)
++.+.
T Consensus 281 ~~~l~ 285 (306)
T 3dra_A 281 YDLLK 285 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.72 E-value=6.2e-08 Score=81.92 Aligned_cols=94 Identities=12% Similarity=-0.058 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhh
Q 041741 643 DHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSS 720 (748)
Q Consensus 643 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 720 (748)
..+..++..+.+.|++++|...+++.. .+.++..|..+...+...|++++|...++++++++|+++.++..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 344456666667777777777766653 334566666666667777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHh
Q 041741 721 LGRWDDLRAVRELMSE 736 (748)
Q Consensus 721 ~g~~~~A~~~~~~~~~ 736 (748)
.|++++|...|+.+.+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777776654
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=5.6e-08 Score=93.18 Aligned_cols=192 Identities=8% Similarity=-0.061 Sum_probs=130.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041741 539 DIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTA 615 (748)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 615 (748)
+...+..+...+.+.|++++|...|+...+ .+...|..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345566677778888888888888887652 367788888888999999999999999888753 3455678888888
Q ss_pred hcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 041741 616 CSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKR 695 (748)
Q Consensus 616 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 695 (748)
+...|++++|+..|++......-.+. .+...+....+......... ......++++.+...+.. + ..|++++|.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~ 156 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELE 156 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHH
Confidence 88999999999988887432211111 01111111111111111111 222233445554444433 2 2689999999
Q ss_pred HHHHHHhcCCCCCcchHHHhHHHhhc-CChHHHHHHHHHHHh
Q 041741 696 AAEELFRLDPKNSAPYSLLANIYSSL-GRWDDLRAVRELMSE 736 (748)
Q Consensus 696 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 736 (748)
.++++++.+|++......+..++... +.+++|.++|+++.+
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999998888888888888777 788999999998765
No 122
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.69 E-value=4.6e-08 Score=79.76 Aligned_cols=95 Identities=16% Similarity=-0.003 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc
Q 041741 644 HYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSL 721 (748)
Q Consensus 644 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 721 (748)
.+..++..+.+.|++++|...+++.. .+.++..|..+...+...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35567888999999999999999885 4457888999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 041741 722 GRWDDLRAVRELMSENC 738 (748)
Q Consensus 722 g~~~~A~~~~~~~~~~~ 738 (748)
|++++|+..++++.+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999876543
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.66 E-value=2.3e-07 Score=80.92 Aligned_cols=127 Identities=9% Similarity=-0.082 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHH
Q 041741 608 TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCR 685 (748)
Q Consensus 608 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 685 (748)
.+..+...+...|++++|...+++.... .+.+...+..++.++...|++++|...+++.. .+.++..+..++..+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3555555666667777777776666322 12235566677777777777887777777664 3446777888888899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcchHHHhHH--HhhcCChHHHHHHHHHHHh
Q 041741 686 LHANVRLAKRAAEELFRLDPKNSAPYSLLANI--YSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 686 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 736 (748)
..|++++|...++++++..|+++.++..++.+ +...|++++|...++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999888877554444 8888999999999887654
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.2e-07 Score=78.25 Aligned_cols=94 Identities=10% Similarity=-0.018 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhh
Q 041741 643 DHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSS 720 (748)
Q Consensus 643 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 720 (748)
..+..++..+.+.|++++|...+++.. .+.++..+..++..+...|++++|...++++++++|+++.++..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 345556667777777777777776664 344566777777777777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHh
Q 041741 721 LGRWDDLRAVRELMSE 736 (748)
Q Consensus 721 ~g~~~~A~~~~~~~~~ 736 (748)
.|++++|...++++.+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 7777777777777654
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.66 E-value=7.5e-08 Score=85.18 Aligned_cols=125 Identities=10% Similarity=0.084 Sum_probs=75.8
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHH-HHhcCCh--
Q 041741 582 AQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDC-LGRAGHF-- 658 (748)
Q Consensus 582 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 658 (748)
...|++++|+..+++..+.. +.+...+..+...|...|++++|+..++++.... +.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 44566777777777766652 3455666677777777777777777777664222 1234455566666 5566766
Q ss_pred HHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 041741 659 HEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA 709 (748)
Q Consensus 659 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 709 (748)
++|...++++. .+.++..+..++..+...|++++|...++++++.+|+++.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 77777766653 2334566666666666777777777777777777776544
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=1.7e-07 Score=78.05 Aligned_cols=114 Identities=10% Similarity=-0.008 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHH
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSS 683 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 683 (748)
..+..+...+...|++++|+..+++.. ...| +...+..++.++...|++++|...+++.. .+.++..+..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 345555555666666666666666553 1222 34555566666666666666666666553 33456677777778
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCC
Q 041741 684 CRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGR 723 (748)
Q Consensus 684 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 723 (748)
+...|++++|...++++++.+|+++.++..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888877664
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=8.3e-08 Score=94.64 Aligned_cols=144 Identities=15% Similarity=0.079 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHH
Q 041741 570 NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMI 649 (748)
Q Consensus 570 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 649 (748)
+...+..+...+...|++++|+..|++.++. .|+...+ ..+.+..+ ... ....+..++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~-~~~--------~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA-QAL--------RLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH-HHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH-HHH--------HHHHHHHHH
Confidence 3456666777777777777777777777764 2322100 00111111 000 135677888
Q ss_pred HHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHH
Q 041741 650 DCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDL 727 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 727 (748)
.+|.+.|++++|...+++.. .+.++..+..+..++...|++++|...++++++++|+++.++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988875 4456888889999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHH
Q 041741 728 R-AVRELMS 735 (748)
Q Consensus 728 ~-~~~~~~~ 735 (748)
. ..|+.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 4 4666654
No 128
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.62 E-value=1.6e-07 Score=75.42 Aligned_cols=99 Identities=10% Similarity=0.015 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCcchHHHhHH
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK--NSAPYSLLANI 717 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 717 (748)
...+..++..+...|++++|...+++.. .+.++..+..++..+...|++++|...++++++..|+ ++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4456677888888889999888888774 3456778888888899999999999999999999999 88999999999
Q ss_pred Hhhc-CChHHHHHHHHHHHhcCCC
Q 041741 718 YSSL-GRWDDLRAVRELMSENCIV 740 (748)
Q Consensus 718 ~~~~-g~~~~A~~~~~~~~~~~~~ 740 (748)
|... |++++|.+++++..+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999 9999999999998765553
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=1.1e-06 Score=80.36 Aligned_cols=131 Identities=11% Similarity=0.028 Sum_probs=108.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCh
Q 041741 543 GSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLV 622 (748)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 622 (748)
+..+...+...|++++|...|++...++...|..+..++...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34566778889999999999999988899999999999999999999999999999864 45667888999999999999
Q ss_pred HHHHHHHHHhhhhhCC-------------CCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCH
Q 041741 623 DVGVEIFNSMQLDHGV-------------EPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDP 674 (748)
Q Consensus 623 ~~A~~~~~~~~~~~~~-------------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 674 (748)
++|+..+++......- .|+ ...+..++.++...|++++|...+++.. ..|+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999988532211 111 2678889999999999999999998874 44543
No 130
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.59 E-value=6.4e-07 Score=78.94 Aligned_cols=152 Identities=10% Similarity=0.054 Sum_probs=78.8
Q ss_pred hhhHHHHHHHccCCchhhhhhhhcCCC---CchhhhhHHHHHhhcCCChhHHHHhhccCCC--CCchhHHHHHHH-HHhc
Q 041741 25 LCNRLIELYSKCNNTHSAQHLFDKMPH---KDIYSWNAILSAQCKSDDLEFAYKLFDEMPE--RNVVSWNNLISA-LVRN 98 (748)
Q Consensus 25 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~-~~~~ 98 (748)
.+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|...|++... |+...+..+... +...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 455667777778888888888887775 3456777777777777888888887777764 322222221111 1122
Q ss_pred CChhHHHHHHHHHHhCCCCCC-cchHHHHHHHhccccCcHHHhHHHHHHHHHCCCC-cHhHHHHHHHHHHhcCChhhHHH
Q 041741 99 GLEEKALSVYNKMSNEGFVPT-HITLASVFKASTALLDVEHGRRCHGLVIKIGLDK-NIYVANALLSLYAKCGWTKHAVP 176 (748)
Q Consensus 99 ~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~ 176 (748)
+....|+..+++..+. .|+ ...+..+-.++...|++++|...++.+.+....+ +...+..+..++...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2233455556555543 222 3333344444444444444444444444433221 12334444444444444444444
Q ss_pred HH
Q 041741 177 VF 178 (748)
Q Consensus 177 ~~ 178 (748)
.|
T Consensus 166 ~y 167 (176)
T 2r5s_A 166 KY 167 (176)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.59 E-value=1.2e-07 Score=78.15 Aligned_cols=93 Identities=8% Similarity=-0.043 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------chHHH
Q 041741 644 HYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSA-------PYSLL 714 (748)
Q Consensus 644 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 714 (748)
.+..++..+.+.|++++|+..|++.. .+.++..+..++.++...|++++|+..++++++++|+++. ++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34556777777777777777777664 3345667777777777778888888888888877776554 45666
Q ss_pred hHHHhhcCChHHHHHHHHHHHh
Q 041741 715 ANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
|.++...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777788888887777654
No 132
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.59 E-value=1.5e-05 Score=76.01 Aligned_cols=230 Identities=8% Similarity=0.010 Sum_probs=165.3
Q ss_pred hCCC-chHHHHHHHHHHHCCCCCC-HHHHHHHHHhhcCCC--CchhHHHHHHHHHHhCCCCchHHHHHHHHHH----Hhc
Q 041741 482 LNSL-DIEAFMFFKQMRQNEMYPT-QFSFATVLSSCAKLS--SSFQGRQVHAQIEKDGYVNDIFVGSALIEMY----CKC 553 (748)
Q Consensus 482 ~~~~-~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 553 (748)
+.|. .++|+..+..++.. .|+ ...++.--..+...+ +++++..+++.+.... +-+..+|+.-..++ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 3343 35788888777755 343 334555555555566 7888888888877765 23444555444444 444
Q ss_pred ---CCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCC----
Q 041741 554 ---GDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGD--EAVRLYKDMIASGVKPDDITFVAILTACSHSGL---- 621 (748)
Q Consensus 554 ---g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---- 621 (748)
+++++++++++.+.+ .|..+|+.-..++...|.++ ++++.++++++.. +-|...|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 788999999988764 57788888888888889888 9999999999975 4566678777766666666
Q ss_pred --hHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHH-HHHHHhhCC--C---CCCHhHHHHHHHHHHhcCCHHHH
Q 041741 622 --VDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHE-AEMLIDEMP--C---KDDPVIWEVLLSSCRLHANVRLA 693 (748)
Q Consensus 622 --~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~--~---~~~~~~~~~l~~~~~~~~~~~~a 693 (748)
++++++.++++... .+-|...|..+..++.+.|+..+ +..+++++. . ..++..+..++..+...|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 88899998888522 23446778888888888887555 555777664 1 34678888899999999999999
Q ss_pred HHHHHHHHh-cCCCCCcchHHHhHH
Q 041741 694 KRAAEELFR-LDPKNSAPYSLLANI 717 (748)
Q Consensus 694 ~~~~~~~~~-~~p~~~~~~~~l~~~ 717 (748)
.++++.+.+ .+|-....+...+..
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHhccChHHHHHHHHHHhh
Confidence 999999997 799776666555443
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.59 E-value=6.7e-07 Score=83.09 Aligned_cols=125 Identities=13% Similarity=-0.089 Sum_probs=68.2
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCH----hHHHHHHHHHHhc
Q 041741 612 ILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDP----VIWEVLLSSCRLH 687 (748)
Q Consensus 612 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~ 687 (748)
+...+...|++++|.++|+.+. ...|+......++..+.+.|++++|+..++.....|++ ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~---~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAP---VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSC---CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 3444555666666666666553 12233223444455566666666666666654422322 2444555556666
Q ss_pred CCHHHHHHHHHHHHhcC--CC-CCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 688 ANVRLAKRAAEELFRLD--PK-NSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 688 ~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
|++++|+..++++.... |. .+.+...++.++.++|+.++|...|+++.+..+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 66666666666665322 32 223556666666666666666666666655443
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.59 E-value=5.6e-06 Score=79.98 Aligned_cols=160 Identities=9% Similarity=-0.048 Sum_probs=121.4
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CC----HHHHH
Q 041741 545 ALIEMYCKCGDIYGARQFFDMMHG-----KN----TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVK-PD----DITFV 610 (748)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~ 610 (748)
..+..+...|++++|...++...+ ++ ...+..+...+...+++++|+..++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999988654 12 113334667777788999999999999984322 22 23688
Q ss_pred HHHHHhcCCCChHHHHHHHHHhhhhhC----CCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-------CCC-CHhHH
Q 041741 611 AILTACSHSGLVDVGVEIFNSMQLDHG----VEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-------CKD-DPVIW 677 (748)
Q Consensus 611 ~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~ 677 (748)
.+...|...|++++|+.+++++..... ..+. ..++..++.+|.+.|++++|...+++.. ..+ -...+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999853221 1222 3467889999999999999999988763 112 25678
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhcC
Q 041741 678 EVLLSSCRLHAN-VRLAKRAAEELFRLD 704 (748)
Q Consensus 678 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~ 704 (748)
..++..+...|+ +++|...+++++.+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 888889999995 699999999999863
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=4.4e-07 Score=74.45 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHH
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSC 684 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 684 (748)
..+..+...+...|++++|...++++... .+.+...+..++.++.+.|++++|...++++. .+.++..+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45556666666667777777776666322 12234556667777777777777777777664 344567777888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcC
Q 041741 685 RLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLG 722 (748)
Q Consensus 685 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 722 (748)
...|++++|...++++++.+|+++.++..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999988888888888876654
No 136
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.58 E-value=3e-07 Score=77.09 Aligned_cols=95 Identities=11% Similarity=-0.043 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHh
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYS 719 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 719 (748)
...+..++..+...|++++|...+++.. .+.++..+..++..+...|++++|...++++++++|+++.++..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 4445555555555666666665555543 23345555555555666666666666666666666666666666666666
Q ss_pred hcCChHHHHHHHHHHHh
Q 041741 720 SLGRWDDLRAVRELMSE 736 (748)
Q Consensus 720 ~~g~~~~A~~~~~~~~~ 736 (748)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66666666666665544
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=3e-07 Score=76.26 Aligned_cols=116 Identities=9% Similarity=-0.079 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHH
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSC 684 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 684 (748)
..+..+...+...|++++|+..+++.... .+.+...+..++.++...|++++|...+++.. .+.++..+..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 44556666666677777777777766422 12235566677777777788888877777664 344577788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCCh
Q 041741 685 RLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRW 724 (748)
Q Consensus 685 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 724 (748)
...|++++|...++++++..|+++.++..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999888875
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=4e-07 Score=77.11 Aligned_cols=104 Identities=12% Similarity=-0.031 Sum_probs=85.7
Q ss_pred CCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHH
Q 041741 602 VKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIW 677 (748)
Q Consensus 602 ~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 677 (748)
+.|+. ..+..+...+...|++++|+..|+++.. ..| +...|..++.+|...|++++|...|++.. .+.++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 34544 4677788888999999999999998852 344 46778889999999999999999998885 44568888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 041741 678 EVLLSSCRLHANVRLAKRAAEELFRLDPKNS 708 (748)
Q Consensus 678 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 708 (748)
..+..++...|++++|...+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8999999999999999999999999999653
No 139
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.57 E-value=2.6e-05 Score=80.82 Aligned_cols=349 Identities=10% Similarity=0.034 Sum_probs=195.2
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-HHHHHHHhccCCC------CCcchHHHHHHHHH----ccCCH
Q 041741 317 YQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGD-IKTGREMFDSMPS------PSVSSWNAMLSSYS----QSENH 385 (748)
Q Consensus 317 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~------~~~~~~~~ll~~~~----~~~~~ 385 (748)
|+++.+..+|++.... .|+...|...+....+.++ .+....+|+.... .+...|...+..+. .+++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7888888888888774 4688888877776666553 2334444443321 34455666665443 23567
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHh---hccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhc-CChHHHHHH
Q 041741 386 KEAIKLFREMQFRGVKPDRTTLAIILSSC---AAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKC-QRNELAERV 461 (748)
Q Consensus 386 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~ 461 (748)
+.+.++|+..... ++. .+..+...| ....+...+..+...... .|... ..++.+...
T Consensus 106 ~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~---------------~y~~ar~~y~~~~~~ 166 (493)
T 2uy1_A 106 EKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITGKKIVGDTLP---------------IFQSSFQRYQQIQPL 166 (493)
T ss_dssp HHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccHHHHHHHHhH---------------HHHHHHHHHHHHHHH
Confidence 7788888887763 221 111222211 111112222222221110 00000 001112222
Q ss_pred HhhCCCCCcchHHHHHHHHHhCC--C-----chHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHh
Q 041741 462 FHRIPELDIVCWNSMIAGLSLNS--L-----DIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKD 534 (748)
Q Consensus 462 ~~~~~~~~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 534 (748)
+.. .+...|...+.--...+ - .+.+..+|+++.... +-+...|...+.-+...|+++.|..+++.....
T Consensus 167 ~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 167 IRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 211 12234444443322211 1 234567788777643 344566666666677788899999999988887
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHH-HHHhhhcC------------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 041741 535 GYVNDIFVGSALIEMYCKCGDIYGA-RQFFDMMH------------GKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASG 601 (748)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 601 (748)
+.+...+.. |....+.++. ..+.+... ......|...+....+.++.+.|..+|+++ ..
T Consensus 243 --P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~- 314 (493)
T 2uy1_A 243 --SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN- 314 (493)
T ss_dssp --CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-
T ss_pred --CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-
Confidence 444443332 2221111111 11111110 012245667777777788899999999999 32
Q ss_pred CCCCHHHHHHHHHHhc-CCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHH
Q 041741 602 VKPDDITFVAILTACS-HSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVL 680 (748)
Q Consensus 602 ~~p~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 680 (748)
...+...|......-. ..++.+.|..+|+......+- +...+...++...+.|+.+.|..+++++. .....|...
T Consensus 315 ~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~ 390 (493)
T 2uy1_A 315 EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSM 390 (493)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHH
Confidence 1233344432221111 233699999999998655432 23455667787888999999999999984 357888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 041741 681 LSSCRLHANVRLAKRAAEELFR 702 (748)
Q Consensus 681 ~~~~~~~~~~~~a~~~~~~~~~ 702 (748)
+..-...|+.+.+..++++++.
T Consensus 391 ~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 391 IEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888999999999998886
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.56 E-value=1.9e-07 Score=81.31 Aligned_cols=110 Identities=10% Similarity=-0.043 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHH
Q 041741 605 DDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLL 681 (748)
Q Consensus 605 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 681 (748)
+...+..+...+...|++++|+..|++.... .| +...+..++.+|.+.|++++|...+++.. .+.++..+..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3457888888999999999999999988532 34 46778889999999999999999998885 444688888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHH
Q 041741 682 SSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANI 717 (748)
Q Consensus 682 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 717 (748)
..+...|++++|...++++++++|+++..+...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999988866555433
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=7.3e-08 Score=81.94 Aligned_cols=118 Identities=9% Similarity=-0.032 Sum_probs=88.1
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--
Q 041741 593 LYKDMIASGVKPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-- 669 (748)
Q Consensus 593 ~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 669 (748)
.++++.. +.|+. ..+..+...+...|++++|+..|+++... .+.+...+..++.+|...|++++|...+++..
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3444444 34433 45667777888888888888888887422 12346677788888888899999998888875
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 041741 670 CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLL 714 (748)
Q Consensus 670 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 714 (748)
.+.++..+..++.++...|++++|...+++++++.|+++......
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 344678888888899999999999999999999999877664433
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.53 E-value=4.5e-08 Score=88.45 Aligned_cols=169 Identities=10% Similarity=-0.016 Sum_probs=105.6
Q ss_pred HHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChH
Q 041741 547 IEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVD 623 (748)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 623 (748)
+......|+++++.+.++.-.. .....+..+...+...|++++|+..|++..+. .|+...+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 3344455666766666654332 23445666777777788888888888877763 2221100000 000
Q ss_pred HHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041741 624 VGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELF 701 (748)
Q Consensus 624 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 701 (748)
.-. ..+ ....+..++.+|...|++++|...+++.. .+.++..+..++.++...|++++|...+++++
T Consensus 81 ~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 000 12456778888889999999998888775 44567888888999999999999999999999
Q ss_pred hcCCCCCcchHHHhHHHhhcCChHHHH-HHHHHHHh
Q 041741 702 RLDPKNSAPYSLLANIYSSLGRWDDLR-AVRELMSE 736 (748)
Q Consensus 702 ~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 736 (748)
+++|+++.++..++.++...|+.+++. ..++.|-.
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998888 55555543
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=1.4e-06 Score=78.89 Aligned_cols=81 Identities=14% Similarity=-0.020 Sum_probs=38.7
Q ss_pred hcCCHHHHHH---HhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhcCCCChH
Q 041741 552 KCGDIYGARQ---FFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIAS----GVKPD-DITFVAILTACSHSGLVD 623 (748)
Q Consensus 552 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~ 623 (748)
..|++++|.+ .+..........+..+...+...|++++|...+++..+. +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 443322223445555566666666666666666555541 11111 123444445555555555
Q ss_pred HHHHHHHHh
Q 041741 624 VGVEIFNSM 632 (748)
Q Consensus 624 ~A~~~~~~~ 632 (748)
+|...+++.
T Consensus 84 ~A~~~~~~a 92 (203)
T 3gw4_A 84 AARRCFLEE 92 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=4.8e-07 Score=73.37 Aligned_cols=91 Identities=14% Similarity=0.069 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcC
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLG 722 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 722 (748)
+..++..+...|++++|...+++.. .+.++..+..++..+...|++++|...++++++..|+++.++..++.+|...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 3334444444444444444444442 22234444444444444455555555555555555544445555555555555
Q ss_pred ChHHHHHHHHHHH
Q 041741 723 RWDDLRAVRELMS 735 (748)
Q Consensus 723 ~~~~A~~~~~~~~ 735 (748)
++++|...+++..
T Consensus 87 ~~~~A~~~~~~~~ 99 (118)
T 1elw_A 87 RFEEAKRTYEEGL 99 (118)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 5555555554443
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=2.9e-06 Score=82.04 Aligned_cols=163 Identities=8% Similarity=-0.088 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CCC--H
Q 041741 541 FVGSALIEMYCKCGDIYGARQFFDMMHG---KNT------VTWNEMIHGYAQNGYGDEAVRLYKDMIASGV---KPD--D 606 (748)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~ 606 (748)
..+...+..+...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778889999999988875432 111 2344466677788899999999999886421 222 3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-------C
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-----LDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-------D 673 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------~ 673 (748)
.+++.+...|...|++++|+.+++++.......|+ ..++..++.+|...|++++|...+++.. ..+ .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888999999999999999999988532222233 2578889999999999999999988763 111 1
Q ss_pred HhHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 041741 674 PVIWEVLLSSCRLHANVRLA-KRAAEELFRL 703 (748)
Q Consensus 674 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 703 (748)
...+..++..+...|++++| ...+++++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56778888889999999999 8889988875
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=1.2e-06 Score=77.31 Aligned_cols=122 Identities=5% Similarity=0.036 Sum_probs=96.0
Q ss_pred hcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHH-HHhcCCH--
Q 041741 616 CSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSS-CRLHANV-- 690 (748)
Q Consensus 616 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~~~~-- 690 (748)
+...|++++|+..+++..... +.+...+..++.+|...|++++|...+++.. .+.++..+..++.. +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 456788888998888874322 3346778889999999999999999998875 34467777788887 7788888
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 691 RLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 691 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
++|...++++++.+|+++.++..++.+|...|++++|...++++.+..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999998877554
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=6.1e-07 Score=74.68 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=88.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHH
Q 041741 641 ILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIY 718 (748)
Q Consensus 641 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 718 (748)
+...+..++..+...|++++|...+++.. .+.+...+..++..+...|++++|...++++++.+|+++.++..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 35678889999999999999999999874 3346888889999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhcC
Q 041741 719 SSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~ 738 (748)
...|++++|.+.+++..+..
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999987643
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.9e-06 Score=73.17 Aligned_cols=110 Identities=13% Similarity=0.022 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHH
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVL 680 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 680 (748)
..+..+...+...|++++|+..|++.. ...|+ ...+..++.+|...|++++|...+++.. .+.++..+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344444555555555555555555543 22333 3445555666666666666666665543 23345566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHh
Q 041741 681 LSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYS 719 (748)
Q Consensus 681 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 719 (748)
...+...|++++|...++++++.+|+++.++..+..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 666777777777777777777777766666655555543
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.44 E-value=1.1e-06 Score=72.08 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHh
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYS 719 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 719 (748)
...+..++..+...|++++|.+.++++. .+.++..+..++..+...|++++|...++++++..|+++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4567788999999999999999999885 44567888889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhcCC
Q 041741 720 SLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 720 ~~g~~~~A~~~~~~~~~~~~ 739 (748)
..|++++|..+++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999876543
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.42 E-value=1.9e-06 Score=80.00 Aligned_cols=139 Identities=13% Similarity=-0.019 Sum_probs=98.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC--hhHHHHHHHHH
Q 041741 575 NEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI--LDHYTCMIDCL 652 (748)
Q Consensus 575 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 652 (748)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+... ... .|. ...+..++.++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHH
Confidence 34566777788888888888777764 3544444555557788888888888887652 111 111 23566788889
Q ss_pred HhcCChHHHHHHHhhCCCC---C--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHH
Q 041741 653 GRAGHFHEAEMLIDEMPCK---D--DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIY 718 (748)
Q Consensus 653 ~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 718 (748)
.+.|++++|+..+++.... | .+..+.....++...|+.++|...+++++..+|+ +.+...|...-
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~ 251 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPS 251 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTT
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCC
Confidence 9999999999999887422 3 2346677777888999999999999999999997 66665554443
No 151
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.42 E-value=5.7e-07 Score=74.99 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCcch----HHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 676 IWEVLLSSCRLHANVRLAKRAAEELFRL-------DPKNSAPY----SLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 676 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.|..+..++...|++++|+..+++++++ +|+++.++ ..+|.++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777788888888888888888 88887788 8888888888888888888887654
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.42 E-value=7.1e-07 Score=75.31 Aligned_cols=107 Identities=13% Similarity=-0.010 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHH
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSC 684 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 684 (748)
..+..+...+...|++++|+..|+++... .+.+...+..++.+|.+.|++++|...+++.. .+.++..+..+...+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555666777778888888888777422 12245667778888888888888888888774 344677788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcchHHHh
Q 041741 685 RLHANVRLAKRAAEELFRLDPKNSAPYSLLA 715 (748)
Q Consensus 685 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 715 (748)
...|++++|...+++++++.|+++.......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 8999999999999999999998876655543
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=3.5e-06 Score=76.22 Aligned_cols=175 Identities=10% Similarity=-0.030 Sum_probs=101.2
Q ss_pred CCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---------CCHHHHHHHHHHHHHcCChh
Q 041741 518 LSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---------KNTVTWNEMIHGYAQNGYGD 588 (748)
Q Consensus 518 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~ 588 (748)
.|+++.|.+.++.+.. ........+..+...+...|++++|...+++... .....+..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4455555553332221 1112445566666667777777777776665542 13346777788888888888
Q ss_pred HHHHHHHHHHHc----CCCC--CHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC----hhHHHHHHHHHHhcCCh
Q 041741 589 EAVRLYKDMIAS----GVKP--DDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI----LDHYTCMIDCLGRAGHF 658 (748)
Q Consensus 589 ~a~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 658 (748)
+|...+++..+. +-.| ....+..+...+...|++++|...+++......-..+ ...+..++.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888888876653 1111 1235667777788888888888888776432211122 22345667777777777
Q ss_pred HHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 659 HEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 659 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
++|...+++.. ......|+......+...+-...|
T Consensus 164 ~~A~~~~~~al------------~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 164 LEAQQHWLRAR------------DIFAELEDSEAVNELMTRLNGLEH 198 (203)
T ss_dssp HHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHH------------HHHHHcCCHHHHHHHHhcccchhh
Confidence 77777766632 334444555444444444444443
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.4e-06 Score=74.00 Aligned_cols=99 Identities=11% Similarity=-0.011 Sum_probs=88.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHh
Q 041741 641 ILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDD----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLA 715 (748)
Q Consensus 641 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 715 (748)
+...+..++..+...|++++|...+++.. ..|+ ...+..+...+...|++++|...++++++.+|+++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 46678889999999999999999999875 5565 677888888899999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhcCC
Q 041741 716 NIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
.+|...|++++|...+++..+..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999876543
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.40 E-value=1.5e-06 Score=71.87 Aligned_cols=98 Identities=15% Similarity=0.051 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHh
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYS 719 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 719 (748)
...+..++..+...|++++|...+++.. .+.++..+..++..+...|++++|...++++++..|+++.++..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4567788999999999999999999875 44578888889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhcCC
Q 041741 720 SLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 720 ~~g~~~~A~~~~~~~~~~~~ 739 (748)
..|++++|..+++++.+..+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HhCCHHHHHHHHHHHHhcCc
Confidence 99999999999999876543
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.38 E-value=8.8e-07 Score=72.90 Aligned_cols=109 Identities=9% Similarity=-0.118 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHH
Q 041741 608 TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCR 685 (748)
Q Consensus 608 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 685 (748)
.+..+...+...|++++|+..|++.... .+.+...+..++.++.+.|++++|...+++.. .+.++..+..++..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4555566666667777777776666422 12235566677777777777777777777664 3345677777888888
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCCcchHHHhHHH
Q 041741 686 LHANVRLAKRAAEELFRLD------PKNSAPYSLLANIY 718 (748)
Q Consensus 686 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 718 (748)
..|++++|...++++++++ |+++.+...+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888888 77666666665554
No 157
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.38 E-value=5.8e-05 Score=78.21 Aligned_cols=364 Identities=9% Similarity=-0.054 Sum_probs=202.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhccCCC--CCcchHHHHHHHHHccCC-HHHHHHHHHHHHHc-CCCC-CHhhHHHHHHH
Q 041741 339 VTSINMLVACVRSGDIKTGREMFDSMPS--PSVSSWNAMLSSYSQSEN-HKEAIKLFREMQFR-GVKP-DRTTLAIILSS 413 (748)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~~ 413 (748)
..|...+..+-. |+.+.+..+|+.... |+...|...+....+.++ .+.+..+|+..... |..| +...+...+.-
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 345555544433 778888888877665 677777777766655553 34556666665543 4333 44555555544
Q ss_pred hh----ccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHH
Q 041741 414 CA----AMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEA 489 (748)
Q Consensus 414 ~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 489 (748)
+. ..++.+.+..+++.++..........+...... .+......+.+++.+ .. +.+..|
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~---------------~~--~~y~~a 156 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGD---------------TL--PIFQSS 156 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHH---------------HH--HHHHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHH---------------Hh--HHHHHH
Confidence 33 235566777777777764322222222222111 111111122222111 00 112223
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHhhcCC--CC-----chhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 041741 490 FMFFKQMRQNEMYPTQFSFATVLSSCAKL--SS-----SFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQF 562 (748)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 562 (748)
..+++.+...-...+...|...+.--... +- .+++..+++.+.... +.++.+|...+..+.+.|+++.|..+
T Consensus 157 r~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 157 FQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33333332210001222333333322111 11 234667888877653 45678888888888899999999999
Q ss_pred hhhcCC-CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcC---------CCCC---HHHHHHHHHHhcCCCChHHHHHH
Q 041741 563 FDMMHG-KNT-VTWNEMIHGYAQNGYGDEAVRLYKDMIASG---------VKPD---DITFVAILTACSHSGLVDVGVEI 628 (748)
Q Consensus 563 ~~~~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~p~---~~~~~~l~~~~~~~~~~~~A~~~ 628 (748)
+++... |.. ..|. .|......++. ++.+.+.- ..+. ...|...+....+.+..+.|..+
T Consensus 236 ~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i 308 (493)
T 2uy1_A 236 VERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKL 308 (493)
T ss_dssp HHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 987543 322 2222 22222222222 22322210 0111 13466666666667789999999
Q ss_pred HHHhhhhhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 629 FNSMQLDHGVEPILDHYTCMIDCLGRAG-HFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
|+++ ...+ .+...|...+..-.+.+ +.+.|..+++... .+.++..|..++......|+.+.|..+++++ +
T Consensus 309 ~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~ 381 (493)
T 2uy1_A 309 FIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----E 381 (493)
T ss_dssp HHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----C
T ss_pred HHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----H
Confidence 9988 3322 24445544343333334 6999999998874 4445777777888788899999999999997 3
Q ss_pred CCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 706 KNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 706 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.....+......-...|+.+.+..+++++.+
T Consensus 382 k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455677777777788999999998888765
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=1.4e-06 Score=75.63 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHH
Q 041741 571 TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMI 649 (748)
Q Consensus 571 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~ 649 (748)
...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.... .|+ ...+..++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 3455556666666666666666666666642 234455666666666666666666666665321 232 45555666
Q ss_pred HHHHhcCChHHHHHHHhhC
Q 041741 650 DCLGRAGHFHEAEMLIDEM 668 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~~ 668 (748)
.+|...|++++|...+++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 6666666666666666655
No 159
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.37 E-value=1.6e-06 Score=71.70 Aligned_cols=99 Identities=12% Similarity=-0.019 Sum_probs=47.1
Q ss_pred HHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCC---HhHHHHHHHHHH
Q 041741 612 ILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDD---PVIWEVLLSSCR 685 (748)
Q Consensus 612 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~~~~~ 685 (748)
+...+...|++++|+..|+++.......+. ...+..++.++...|++++|...+++.. .+.+ +..+..++..+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344445555555555555555322111110 1244445555555555555555555442 1112 334444555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcc
Q 041741 686 LHANVRLAKRAAEELFRLDPKNSAP 710 (748)
Q Consensus 686 ~~~~~~~a~~~~~~~~~~~p~~~~~ 710 (748)
..|++++|...++++++..|+++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHH
Confidence 5555555555555555555544433
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.37 E-value=2.1e-06 Score=88.56 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHH
Q 041741 570 NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMI 649 (748)
Q Consensus 570 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 649 (748)
....|..+...+.+.|++++|+..|++.++. .|+...+ . -+...+ .... ....|..++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~~--------~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SESF--------LLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHHH--------HHHHHHHHH
Confidence 3456777778888888888888888887763 2221100 0 000000 0000 135677888
Q ss_pred HHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHH
Q 041741 650 DCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDL 727 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 727 (748)
.+|.+.|++++|+..+++.. .+.++..+..+..++...|++++|...++++++++|+++.++..++.++...|++++|
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 4456788888999999999999999999999999999999999999999999999988
Q ss_pred HH-HHHHH
Q 041741 728 RA-VRELM 734 (748)
Q Consensus 728 ~~-~~~~~ 734 (748)
.+ .++.|
T Consensus 405 ~~~~~~~~ 412 (457)
T 1kt0_A 405 DRRIYANM 412 (457)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 75 45544
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=2.8e-06 Score=68.64 Aligned_cols=110 Identities=13% Similarity=-0.008 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHH
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSC 684 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 684 (748)
..+..+...+...|++++|...+++.... .+.+...+..++.++...|++++|...+++.. .+.++..+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555566666667777777776666322 12235566667777777777777777777664 334577777888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHH
Q 041741 685 RLHANVRLAKRAAEELFRLDPKNSAPYSLLANIY 718 (748)
Q Consensus 685 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 718 (748)
...|++++|...++++++.+|+++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8889999999999999999998877777776654
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.32 E-value=3.3e-05 Score=74.44 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=26.6
Q ss_pred CCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 705 PKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 705 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
+.++.++..|+.+|...|+.++|.+.++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45667788999999999999999999998753
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.32 E-value=9.9e-07 Score=91.39 Aligned_cols=119 Identities=11% Similarity=-0.047 Sum_probs=96.5
Q ss_pred HHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhc
Q 041741 611 AILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLH 687 (748)
Q Consensus 611 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 687 (748)
.+...+...|++++|+..+++.... .|+ ...+..++.+|.+.|++++|.+.+++.. .+.++..+..++..+...
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445667788999999998888532 343 6778889999999999999999988875 344678888899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchHHHhHH--HhhcCChHHHHHHHH
Q 041741 688 ANVRLAKRAAEELFRLDPKNSAPYSLLANI--YSSLGRWDDLRAVRE 732 (748)
Q Consensus 688 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 732 (748)
|++++|...++++++++|+++.++..++.+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999988 889999999999988
No 164
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.31 E-value=1.1e-06 Score=86.53 Aligned_cols=151 Identities=11% Similarity=-0.012 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHH
Q 041741 570 NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMI 649 (748)
Q Consensus 570 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 649 (748)
....+..+...+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ...+..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHH
Confidence 3456777788888899999999999998874 455442 233444454443321 13578899
Q ss_pred HHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHH-hhcCChHH
Q 041741 650 DCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIY-SSLGRWDD 726 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~ 726 (748)
.+|.+.|++++|...+++.. .+.+...+..+..++...|++++|...++++++++|+++.++..|+.+. ...+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 3456788899999999999999999999999999999999999999884 45577888
Q ss_pred HHHHHHHHHhcCCC
Q 041741 727 LRAVRELMSENCIV 740 (748)
Q Consensus 727 A~~~~~~~~~~~~~ 740 (748)
+...|+.|....+.
T Consensus 318 a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 318 QKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------
T ss_pred HHHHHHHhhCCCCC
Confidence 88899887665443
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.30 E-value=2.9e-06 Score=73.77 Aligned_cols=97 Identities=12% Similarity=0.023 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhh
Q 041741 643 DHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSS 720 (748)
Q Consensus 643 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 720 (748)
..+..++..+...|++++|...+++.. .+.++..+..++..+...|++++|...++++++.+|+++.++..++.++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 446678889999999999999999875 445688888999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCC
Q 041741 721 LGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 721 ~g~~~~A~~~~~~~~~~~~ 739 (748)
.|++++|..+++++.+..+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST
T ss_pred hccHHHHHHHHHHHHHhCC
Confidence 9999999999999876543
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=2.4e-06 Score=71.51 Aligned_cols=101 Identities=8% Similarity=-0.104 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHH
Q 041741 604 PDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLL 681 (748)
Q Consensus 604 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 681 (748)
.+...+..+...+...|++++|+..|++..... +.+...+..++.++...|++++|...+++.. .+.++..+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 345566667777777777777777777664221 2235567777777778888888887777764 344577788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 041741 682 SSCRLHANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 682 ~~~~~~~~~~~a~~~~~~~~~~~p~ 706 (748)
..+...|++++|...+++++++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888999999999999888887
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.28 E-value=1.5e-06 Score=75.31 Aligned_cols=112 Identities=12% Similarity=0.033 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhhhC------C---------CCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFNSMQLDHG------V---------EPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP- 669 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~---------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 669 (748)
..+......+...|++++|+..|++...... . .|. ...+..++.+|.+.|++++|...+++..
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4566677777788888888888877643210 0 111 2445566666666666666666666553
Q ss_pred -CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cchHHHhHHH
Q 041741 670 -CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS-APYSLLANIY 718 (748)
Q Consensus 670 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 718 (748)
.+.++..+..++.++...|++++|...++++++++|+++ .+...+..+.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 333455666666666666666666666666666666655 3344444433
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=1.9e-06 Score=71.30 Aligned_cols=111 Identities=6% Similarity=-0.024 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-C----CCC----HhHH
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-C----KDD----PVIW 677 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~ 677 (748)
..+..+...+...|++++|+..+++.... .+.+...+..++.++...|++++|...+++.. . .++ +..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45666677777777777777777776422 12345566677777777777777777776663 1 122 5556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhh
Q 041741 678 EVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSS 720 (748)
Q Consensus 678 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 720 (748)
..++..+...|++++|...++++++..| ++.....++.+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 6666677777777777777777777777 66666665555443
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.27 E-value=4.5e-07 Score=73.44 Aligned_cols=91 Identities=9% Similarity=0.070 Sum_probs=51.3
Q ss_pred CCChHHHHHHHHHhhhhhCC-CCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHH
Q 041741 619 SGLVDVGVEIFNSMQLDHGV-EPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAK 694 (748)
Q Consensus 619 ~~~~~~A~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 694 (748)
.|++++|+..|++... .+. .|+ ...+..++.+|...|++++|...+++.. .+.++..+..++.++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4666667777766631 110 122 4455566666666666666666666653 3334556666666666666666666
Q ss_pred HHHHHHHhcCCCCCcc
Q 041741 695 RAAEELFRLDPKNSAP 710 (748)
Q Consensus 695 ~~~~~~~~~~p~~~~~ 710 (748)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 6666666666655543
No 170
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=3.3e-06 Score=80.74 Aligned_cols=113 Identities=7% Similarity=-0.111 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCC-CC-CCHhHHHHHH
Q 041741 605 DDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CK-DDPVIWEVLL 681 (748)
Q Consensus 605 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~ 681 (748)
+...+..+...+...|++++|+..|++.... .| +...+..++.+|.+.|++++|...+++.. .. .+...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4566778888888999999999999888532 34 46778888999999999999999988875 33 4577788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhh
Q 041741 682 SSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSS 720 (748)
Q Consensus 682 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 720 (748)
.++...|++++|...++++++++|+++..+...++....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 118 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH
Confidence 888899999999999999999998877666555555443
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=8.3e-06 Score=84.06 Aligned_cols=189 Identities=7% Similarity=-0.112 Sum_probs=134.6
Q ss_pred HHHHhcCCHHHHHHHhhhcCC--C------------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCH
Q 041741 548 EMYCKCGDIYGARQFFDMMHG--K------------------NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASG-VKPDD 606 (748)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~--~------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~ 606 (748)
..+.+.|++++|.+.|..+.+ + ...++..++..|...|++++|.+++.++...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345566777777777766542 1 01246778889999999999999988876521 11222
Q ss_pred ----HHHHHHHHHhcCCCChHHHHHHHHHhhhhh---CCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC-------CC
Q 041741 607 ----ITFVAILTACSHSGLVDVGVEIFNSMQLDH---GVEPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP-------CK 671 (748)
Q Consensus 607 ----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~ 671 (748)
...+.+...+...|+++.|..+++...... +..+. ..++..++..|...|++++|..+++++. .+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 234445556677899999999988764322 22222 4567789999999999999999988763 11
Q ss_pred C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------cchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 672 D-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNS-------APYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 672 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
+ ...++..++..|...|++++|...+++++...|..+ ..+..++..+...|++++|..++.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 234677778889999999999999999988754322 3467778888999999999998887754
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.19 E-value=3.9e-06 Score=68.17 Aligned_cols=97 Identities=10% Similarity=-0.015 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHH
Q 041741 609 FVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCR 685 (748)
Q Consensus 609 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 685 (748)
+..+...+...|++++|+..+++... ..| +...+..++.++...|++++|...+++.. .+.++..+..+...+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44455666777788888888777742 234 45667777888888888888888887764 3345777778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC
Q 041741 686 LHANVRLAKRAAEELFRLDPKNS 708 (748)
Q Consensus 686 ~~~~~~~a~~~~~~~~~~~p~~~ 708 (748)
..|++++|...++++++.+|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888899999999888888654
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.19 E-value=1.4e-05 Score=65.44 Aligned_cols=60 Identities=7% Similarity=-0.061 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhh
Q 041741 573 TWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQ 633 (748)
Q Consensus 573 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 633 (748)
.+..++..+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|+..+++..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34556666666666666666666666642 2334456666666666666666666666553
No 174
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.18 E-value=6.1e-06 Score=74.23 Aligned_cols=96 Identities=10% Similarity=-0.037 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC-C-CCCH----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041741 643 DHYTCMIDCLGRAGHFHEAEMLIDEMP-C-KDDP----------------VIWEVLLSSCRLHANVRLAKRAAEELFRLD 704 (748)
Q Consensus 643 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 704 (748)
..+..++..+.+.|++++|...+++.. . +.++ ..+..+...+...|++++|...++++++.+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 445667777778888888888777663 1 2222 677888888999999999999999999999
Q ss_pred CCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 705 PKNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 705 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
|+++.++..++.+|...|++++|...|+++.+..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999887643
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.17 E-value=8.8e-06 Score=67.07 Aligned_cols=93 Identities=13% Similarity=0.023 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCC-CCC-CH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CcchHHHhHH
Q 041741 646 TCMIDCLGRAGHFHEAEMLIDEMP-CKD-DP---VIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN---SAPYSLLANI 717 (748)
Q Consensus 646 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 717 (748)
..++..+...|++++|...+++.. ..| ++ ..+..++..+...|++++|...++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 346667777888888888877764 223 33 466667777777888888888888888888877 5567888888
Q ss_pred HhhcCChHHHHHHHHHHHhcC
Q 041741 718 YSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~ 738 (748)
|...|++++|...++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888776543
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=3.7e-06 Score=72.71 Aligned_cols=93 Identities=17% Similarity=0.117 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC----CCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCc
Q 041741 644 HYTCMIDCLGRAGHFHEAEMLIDEMP----CKDD----PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK------NSA 709 (748)
Q Consensus 644 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~ 709 (748)
.+..++.++...|++++|...+++.. ..++ ...+..+...+...|++++|...++++++..+. .+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34445555555666666655555442 0111 334555666677778888888888887776322 134
Q ss_pred chHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 710 PYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
++..++.+|...|++++|.+++++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 678888899999999999998888765
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.16 E-value=0.00072 Score=65.12 Aligned_cols=225 Identities=12% Similarity=0.018 Sum_probs=153.8
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCC-CchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-C-CHH
Q 041741 481 SLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLS-SSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKC-G-DIY 557 (748)
Q Consensus 481 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 557 (748)
.+.+..++|+++++.+...+ +-+...++.--..+...+ .++++..+++.+.... +-+..+|+.-..++.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 34445577888888888653 223444554444444556 5888888888887654 34666777777667666 6 889
Q ss_pred HHHHHhhhcCC---CCHHHHHHHHHHHHHcCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCC-----
Q 041741 558 GARQFFDMMHG---KNTVTWNEMIHGYAQNGYGD--------EAVRLYKDMIASGVKPDDITFVAILTACSHSGL----- 621 (748)
Q Consensus 558 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----- 621 (748)
+++++++.+.+ .|..+|+--..++...|.++ ++++.++++++.. +-|...|+.....+...+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 99999998875 46677777666666666666 8999999999974 4566778887777777765
Q ss_pred --hHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCCh--------------------HHHHHHHhhCC-C-------
Q 041741 622 --VDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHF--------------------HEAEMLIDEMP-C------- 670 (748)
Q Consensus 622 --~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~------- 670 (748)
++++++.++++.. ..|+ ...|..+-..+.+.|+. .+.......+. .
T Consensus 222 ~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 222 RSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred HHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 6788888887752 3444 55666666666666653 34445555553 1
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCcch
Q 041741 671 KDDPVIWEVLLSSCRLHANVRLAKRAAEELF-RLDPKNSAPY 711 (748)
Q Consensus 671 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~ 711 (748)
.+.+..+..++..|...|+.++|.++++.+. +.+|-....+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 2567888899999999999999999999987 5688443333
No 178
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.15 E-value=0.00021 Score=68.54 Aligned_cols=178 Identities=9% Similarity=0.008 Sum_probs=95.5
Q ss_pred HHHHHHHhhhcCC---CCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCC-hHHHHHHH
Q 041741 556 IYGARQFFDMMHG---KNTVTWNEMIHGYAQNG--YGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGL-VDVGVEIF 629 (748)
Q Consensus 556 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~A~~~~ 629 (748)
+++++.+++.+.. .+..+|+.-..++...+ ++++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3445555554432 35555655555555555 3566666666666653 3344555555555555555 36666666
Q ss_pred HHhhhhhCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhc------
Q 041741 630 NSMQLDHGVEPILDHYTCMIDCLGRA--------------GHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLH------ 687 (748)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~------ 687 (748)
+++... .+-+...|.....++.+. +.++++++.+.+.. .+.+...|..+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 666421 122344444444444333 34566666666654 344566665554444433
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCcchHHHhHHH---hhcCChHHHHHHHHHHHh
Q 041741 688 -----ANVRLAKRAAEELFRLDPKNSAPYSLLANIY---SSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 688 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~ 736 (748)
+..+++++.++++++++|++.-++..++.+. ...|..++....+.++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3466777777777777776643333333221 234666677777776654
No 179
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=6.3e-07 Score=71.79 Aligned_cols=93 Identities=13% Similarity=0.024 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CcchH
Q 041741 641 ILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN------SAPYS 712 (748)
Q Consensus 641 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 712 (748)
+...+..++..+...|++++|...+++.. .+.++..+..+...+...|++++|...++++++++|++ +.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34567778888999999999999998875 44568888899999999999999999999999999988 77888
Q ss_pred HHhHHHhhcCChHHHHHHHHH
Q 041741 713 LLANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~ 733 (748)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 899999999988888776654
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.13 E-value=5.2e-06 Score=82.66 Aligned_cols=138 Identities=9% Similarity=0.020 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHH
Q 041741 571 TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMI 649 (748)
Q Consensus 571 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~ 649 (748)
...+..+...+.+.|++++|+..|++.++. .|+.. ..... +.. ....| +...+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~---~~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADG---AKLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHH---GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHH---HHHHHHHHHHHHHHH
Confidence 345677777888888888888888887762 11110 00001 111 01122 246688899
Q ss_pred HHHHhcCChHHHHHHHhhCC-CC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHH
Q 041741 650 DCLGRAGHFHEAEMLIDEMP-CK-DDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDL 727 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 727 (748)
.+|.+.|++++|...+++.. .. .++..+..+..++...|++++|...++++++++|+++.++..++.++...|+.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 33 46788888999999999999999999999999999999999999999999998888
Q ss_pred HHH
Q 041741 728 RAV 730 (748)
Q Consensus 728 ~~~ 730 (748)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 753
No 181
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.13 E-value=7.7e-06 Score=63.69 Aligned_cols=66 Identities=29% Similarity=0.293 Sum_probs=56.2
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 671 KDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 671 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
+.++..+..++..+...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345777888888888889999999999999999998888999999999999999999988887654
No 182
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.13 E-value=8.6e-06 Score=61.75 Aligned_cols=72 Identities=15% Similarity=0.051 Sum_probs=63.1
Q ss_pred CCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCCCCCC
Q 041741 671 KDDPVIWEVLLSSCRLHAN---VRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCIVKDP 743 (748)
Q Consensus 671 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 743 (748)
++++..+..+..++...++ .++|...++++++.+|+++.+...+|..++..|++++|+.+|+++.+..+. +|
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Cc
Confidence 4578888888887654444 799999999999999999999999999999999999999999999887776 55
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=1.6e-06 Score=70.16 Aligned_cols=84 Identities=15% Similarity=0.056 Sum_probs=61.9
Q ss_pred hcCChHHHHHHHhhCC-C---CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHH
Q 041741 654 RAGHFHEAEMLIDEMP-C---KD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLR 728 (748)
Q Consensus 654 ~~g~~~~A~~~~~~~~-~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 728 (748)
..|++++|...+++.. . .| ++..+..++..+...|++++|...++++++.+|+++.++..++.+|...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3577788888887764 2 13 35667777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhc
Q 041741 729 AVRELMSEN 737 (748)
Q Consensus 729 ~~~~~~~~~ 737 (748)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888876654
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.13 E-value=3.8e-06 Score=72.73 Aligned_cols=92 Identities=10% Similarity=0.014 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC-C------------------CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMP-C------------------KD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLD 704 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~-~------------------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 704 (748)
+...+..+.+.|++++|...|++.. . .| ....+..+..++...|++++|...++++++++
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 3445556666666666666665542 1 11 12345555556666666666666666666666
Q ss_pred CCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 705 PKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 705 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
|+++.++..+|.+|...|++++|...|++..+
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 66666666666666666666666666665544
No 185
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.11 E-value=2.1e-05 Score=77.42 Aligned_cols=145 Identities=10% Similarity=0.007 Sum_probs=97.5
Q ss_pred CCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC----------------HHHHHHHHHH
Q 041741 519 SSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG--KN----------------TVTWNEMIHG 580 (748)
Q Consensus 519 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~l~~~ 580 (748)
+++++|...++...... +.....+..+...+.+.|++++|...|++..+ |+ ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444544443322211 12466788889999999999999999998763 32 4677777888
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hhHHHHHHHHHHhcCChH
Q 041741 581 YAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LDHYTCMIDCLGRAGHFH 659 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 659 (748)
+.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|+..|+++.. +.|+ ...+..++.++.+.|+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887753 34556777777777777777777777777642 2333 455666777777777777
Q ss_pred HHH-HHHhhC
Q 041741 660 EAE-MLIDEM 668 (748)
Q Consensus 660 ~A~-~~~~~~ 668 (748)
+|. ..++.|
T Consensus 282 ~a~~~~~~~~ 291 (336)
T 1p5q_A 282 AREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 663 344443
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.10 E-value=5.1e-06 Score=69.29 Aligned_cols=75 Identities=11% Similarity=0.026 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC-C-------CCC-HhHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 041741 644 HYTCMIDCLGRAGHFHEAEMLIDEMP-C-------KDD-PVIW----EVLLSSCRLHANVRLAKRAAEELFRLDPKNSAP 710 (748)
Q Consensus 644 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 710 (748)
.|..++.++.+.|++++|+..+++.. . .|+ ...| .....++...|++++|+..|+++++++|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 56666666666666666666665543 3 564 5677 888889999999999999999999999999888
Q ss_pred hHHHhHHH
Q 041741 711 YSLLANIY 718 (748)
Q Consensus 711 ~~~l~~~~ 718 (748)
...+..+-
T Consensus 139 ~~~~~~~~ 146 (159)
T 2hr2_A 139 TPGKERMM 146 (159)
T ss_dssp CTTHHHHH
T ss_pred HHHHHHHH
Confidence 77665443
No 187
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.09 E-value=1.6e-05 Score=63.36 Aligned_cols=100 Identities=10% Similarity=-0.008 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCC--CHhHHHHHHH
Q 041741 607 ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKD--DPVIWEVLLS 682 (748)
Q Consensus 607 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~ 682 (748)
..+..+...+...|++++|+..+++.... .+.+...+..++.++...|++++|...+++.. .+. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34555666667777777777777766422 12235566677777777788888877777664 233 4677777788
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 041741 683 SCRLH-ANVRLAKRAAEELFRLDPKNS 708 (748)
Q Consensus 683 ~~~~~-~~~~~a~~~~~~~~~~~p~~~ 708 (748)
.+... |++++|.+.+++++...|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 888888888888888888654
No 188
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.05 E-value=1.2e-05 Score=66.37 Aligned_cols=109 Identities=8% Similarity=-0.014 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCC-CCC----hhHHH
Q 041741 572 VTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGV-EPI----LDHYT 646 (748)
Q Consensus 572 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~----~~~~~ 646 (748)
..+..++..+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++...... .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555666666666666666666666542 334455556666666666666666666665322211 111 34455
Q ss_pred HHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHH
Q 041741 647 CMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVLL 681 (748)
Q Consensus 647 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 681 (748)
.++.++...|++++|...+++.. ..|++..+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 56666666666666666666553 334444444333
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.02 E-value=0.00011 Score=77.32 Aligned_cols=169 Identities=9% Similarity=-0.040 Sum_probs=130.1
Q ss_pred CHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC-
Q 041741 555 DIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGY----------GDEAVRLYKDMIASGVKPDDITFVAILTACSHSG- 620 (748)
Q Consensus 555 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~- 620 (748)
.-++|.+.++.+.. .+...|+.-..++...|+ ++++++.++++.+.. +-+...|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567777777653 355667766666666666 889999999999864 456678888888888888
Q ss_pred -ChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhc---------
Q 041741 621 -LVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAG-HFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLH--------- 687 (748)
Q Consensus 621 -~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------- 687 (748)
+++++++.++++... -+-+...|..-..++.+.| .++++++.++++. .+.+...|......+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 669999999998532 1234667777777888888 8899999988886 334677787777765542
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHH
Q 041741 688 -----ANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDD 726 (748)
Q Consensus 688 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 726 (748)
+.++++.+.+++++..+|+|..++..+++++...|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988655
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.00 E-value=3.6e-06 Score=69.97 Aligned_cols=85 Identities=15% Similarity=0.069 Sum_probs=57.8
Q ss_pred hcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc
Q 041741 654 RAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHAN----------VRLAKRAAEELFRLDPKNSAPYSLLANIYSSL 721 (748)
Q Consensus 654 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 721 (748)
+.+.+++|.+.+++.. .+.++..|..+..++...++ +++|+..++++++++|+++.++..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3445555665555553 33345555555555555443 45888888888888888888888888888877
Q ss_pred C-----------ChHHHHHHHHHHHhcC
Q 041741 722 G-----------RWDDLRAVRELMSENC 738 (748)
Q Consensus 722 g-----------~~~~A~~~~~~~~~~~ 738 (748)
| ++++|+++|+++.+-.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 4 7888888888766543
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.99 E-value=9.8e-06 Score=65.17 Aligned_cols=64 Identities=13% Similarity=0.007 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
...+..++.+|...|++++|...+++.. .+.++..+..+...+...|++++|...+++++++.|
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4445555555666666666666555543 223345555555555555666666666666665555
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.99 E-value=1.3e-05 Score=78.85 Aligned_cols=150 Identities=13% Similarity=-0.006 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 041741 540 IFVGSALIEMYCKCGDIYGARQFFDMMHG--KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACS 617 (748)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 617 (748)
...+..+...+.+.|++++|...|++... |+... +...++.+++...+. ...|..+..+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 44567778888899999999999998653 33221 112233333332221 136778888889
Q ss_pred CCCChHHHHHHHHHhhhhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHH-HHhcCCHHHH
Q 041741 618 HSGLVDVGVEIFNSMQLDHGVEP-ILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-DPVIWEVLLSS-CRLHANVRLA 693 (748)
Q Consensus 618 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~~~~~~a 693 (748)
..|++++|+..+++... ..| +...+..++.+|...|++++|...+++.. ..| ++..+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998853 234 46778889999999999999999999885 444 44555555554 3445677888
Q ss_pred HHHHHHHHhcCCCCCc
Q 041741 694 KRAAEELFRLDPKNSA 709 (748)
Q Consensus 694 ~~~~~~~~~~~p~~~~ 709 (748)
...+++++...|+++.
T Consensus 319 ~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 319 KEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------
T ss_pred HHHHHHhhCCCCCCCC
Confidence 9999999999997653
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.97 E-value=2.2e-05 Score=59.75 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHh
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYS 719 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 719 (748)
...+..++..+...|++++|...+++.. .+.++..+..+...+...|++++|...++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3456667777888888888888877764 34456777788888888889999999999999999988888888888877
Q ss_pred hcC
Q 041741 720 SLG 722 (748)
Q Consensus 720 ~~g 722 (748)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=2.4e-05 Score=67.38 Aligned_cols=133 Identities=11% Similarity=-0.021 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CCH----HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC----hh
Q 041741 573 TWNEMIHGYAQNGYGDEAVRLYKDMIASGVK-PDD----ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI----LD 643 (748)
Q Consensus 573 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~ 643 (748)
++..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|...+++........++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555566666666666555442100 111 24555666666667777777666665322211111 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC----CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 644 HYTCMIDCLGRAGHFHEAEMLIDEMP----CKD----DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 644 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
.+..++.++...|++++|...+++.. ..+ ....+..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 45566777777777777777766552 111 134556667778888888888888888887644
No 195
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.92 E-value=8e-06 Score=79.41 Aligned_cols=259 Identities=14% Similarity=0.065 Sum_probs=135.6
Q ss_pred CcchhhHHHHHHHccCCchhhhhhhhcCCCCchhhhhHHHHHhhcCCChhHHHHhhccCCC--CCchhHHHHHHHHHhcC
Q 041741 22 DTFLCNRLIELYSKCNNTHSAQHLFDKMPHKDIYSWNAILSAQCKSDDLEFAYKLFDEMPE--RNVVSWNNLISALVRNG 99 (748)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~ 99 (748)
++.+|..|..++++.++..+|.+.|=+. .|...|..++.+..+.|++++-.+.+.-..+ +++..=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 3445666666666666666666655333 3455566666666666666666666654433 23333445666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHh
Q 041741 100 LEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFE 179 (748)
Q Consensus 100 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 179 (748)
+..+..+++ -.||..-...+-.-|...|.++.|+-+|..+. -|..|...+.+.|++..|.+.-+
T Consensus 131 rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 131 RLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp SSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTTTTT
T ss_pred cHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 655443332 23555555555555555555555555543221 12223333444555555543322
Q ss_pred cCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCCCCcchhcccccccccccchhHH
Q 041741 180 EMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQV 259 (748)
Q Consensus 180 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (748)
+. .++.||-.+..+|...+.+.-|.-.--.+. .....+..++..|...|.-+++-.+++..-
T Consensus 195 KA--ns~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEagl----------- 256 (624)
T 3lvg_A 195 KA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL----------- 256 (624)
T ss_dssp TC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHT-----------
T ss_pred hc--CChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHh-----------
Confidence 22 477788888888888888776654433332 111122223333333332222222222111
Q ss_pred HHHHHHhcC-CCchHHHHHHHHHHHhcCChhHHHHHhccCCCC-----------CcccHHHHHHHHHhcCChhHHHH
Q 041741 260 HCLTIKLGF-EADLHLSNSLLDMYAKNGDMDSAEVIFSNLPER-----------SVVSWNVMIAGYGQKYQSTKAIE 324 (748)
Q Consensus 260 ~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~ 324 (748)
|. ......++-|.-.|++- ++++..+.++..-.+ ....|.-+.-.|.+-.+++.|..
T Consensus 257 -------glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 257 -------GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -------TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -------CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 22 24455677777667665 455555555544321 33467777777777777776653
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=6e-05 Score=77.53 Aligned_cols=159 Identities=9% Similarity=-0.022 Sum_probs=120.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC
Q 041741 578 IHGYAQNGYGDEAVRLYKDMIASGVKPDD----------------ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI 641 (748)
Q Consensus 578 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 641 (748)
...+...|++++|++.|.++.+....... ..+..++..|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567889999999999999985322111 24778899999999999999999988544433333
Q ss_pred hh----HHHHHHHHHHhcCChHHHHHHHhhCC-------CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----
Q 041741 642 LD----HYTCMIDCLGRAGHFHEAEMLIDEMP-------CKD-DPVIWEVLLSSCRLHANVRLAKRAAEELFRLD----- 704 (748)
Q Consensus 642 ~~----~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 704 (748)
.. ....+...+...|++++|..+++... ..+ ...++..++..+...|++++|...++++...-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 23445566667899999998887652 222 24577788889999999999999999988752
Q ss_pred -CCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 705 -PKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 705 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
|....++..++.+|...|++++|..++++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22234799999999999999999999998765
No 197
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.90 E-value=1.8e-05 Score=81.95 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=36.5
Q ss_pred HHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 041741 550 YCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGV 626 (748)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 626 (748)
+.+.|++++|.+.|++..+ .+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3344445555544444331 234444444444444444444444444444431 222334444444444444444444
Q ss_pred HHHHHh
Q 041741 627 EIFNSM 632 (748)
Q Consensus 627 ~~~~~~ 632 (748)
..++++
T Consensus 95 ~~~~~a 100 (477)
T 1wao_1 95 RDYETV 100 (477)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.89 E-value=1.4e-05 Score=81.94 Aligned_cols=123 Identities=10% Similarity=0.064 Sum_probs=89.7
Q ss_pred hcCCCChHHHHHHHHHhhhhhC--C---CCC-hhHHHHHHHHHHhcCChHHHHHHHhhCC------CCC-C---HhHHHH
Q 041741 616 CSHSGLVDVGVEIFNSMQLDHG--V---EPI-LDHYTCMIDCLGRAGHFHEAEMLIDEMP------CKD-D---PVIWEV 679 (748)
Q Consensus 616 ~~~~~~~~~A~~~~~~~~~~~~--~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~-~---~~~~~~ 679 (748)
+..+|++++|+.++++...... + .|+ ..+++.++.+|...|++++|..++++.. ..| . ...++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566777777777766543221 1 222 4567788888888888888888777652 222 2 345677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCcc---hHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRL-----DPKNSAP---YSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
|+..|...|++++|+..+++++++ .|+.|.+ ...|..++...|++++|+..|+.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999884 6665544 5678888999999999999999998743
No 199
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.88 E-value=0.00053 Score=65.74 Aligned_cols=184 Identities=9% Similarity=-0.025 Sum_probs=133.9
Q ss_pred hcCCHH-HHHHHhhhcCC--C-CHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 041741 552 KCGDIY-GARQFFDMMHG--K-NTVTWNEMIHGYAQNGY----------GDEAVRLYKDMIASGVKPDDITFVAILTACS 617 (748)
Q Consensus 552 ~~g~~~-~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 617 (748)
+.|.++ +|+.+++.+.. | +...|+.-...+...+. +++++..++.+.... +-+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 344443 67777777664 2 33445543333333322 678999999999863 456678887777777
Q ss_pred CCC--ChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCC-hHHHHHHHhhCC--CCCCHhHHHHHHHHHHhc-----
Q 041741 618 HSG--LVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGH-FHEAEMLIDEMP--CKDDPVIWEVLLSSCRLH----- 687 (748)
Q Consensus 618 ~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----- 687 (748)
..| .+++++.+++++... .+-+...|..-..++...|. ++++++.++++. .+.+...|+.....+...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 767 489999999999532 23346677777777888888 589999998885 455778888777766554
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc-----------CChHHHHHHHHHHHhcC
Q 041741 688 ---------ANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSL-----------GRWDDLRAVRELMSENC 738 (748)
Q Consensus 688 ---------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~ 738 (748)
+.++++.+.+++++..+|+|..++..+.+++... +..+++++.++++.+-.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 4578999999999999999999999888887777 56788999888886644
No 200
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.87 E-value=3.4e-05 Score=79.49 Aligned_cols=95 Identities=9% Similarity=0.012 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC-CCC-C---------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041741 644 HYTCMIDCLGRAGHFHEAEMLIDEMP-CKD-D---------------PVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 644 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 706 (748)
.+..++..|.+.|++++|...|++.. ..| + ...+..+..++...|++++|+..++++++++|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 34455555556666666666555543 111 1 467888888999999999999999999999999
Q ss_pred CCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 707 NSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 707 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
++.++..++.+|...|++++|+..|+++.+..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999987644
No 201
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.83 E-value=2.8e-05 Score=77.34 Aligned_cols=66 Identities=15% Similarity=0.027 Sum_probs=61.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 673 DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 673 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
+...+..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|+..|+++.+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 456788888899999999999999999999999999999999999999999999999999987654
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=5.4e-05 Score=62.95 Aligned_cols=89 Identities=7% Similarity=-0.131 Sum_probs=43.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhh---
Q 041741 648 MIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRL----HANVRLAKRAAEELFRLDPKNSAPYSLLANIYSS--- 720 (748)
Q Consensus 648 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 720 (748)
++.+|...+..++|.+++++.....++.....+...|.. .+|+++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333343334444444444443322334444444444443 44555555555555544 344555555555555
Q ss_pred -cCChHHHHHHHHHHHhcC
Q 041741 721 -LGRWDDLRAVRELMSENC 738 (748)
Q Consensus 721 -~g~~~~A~~~~~~~~~~~ 738 (748)
.+|.++|.++|++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 555556655555554443
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=6.6e-05 Score=59.64 Aligned_cols=67 Identities=16% Similarity=0.028 Sum_probs=61.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 673 DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 673 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
+...+..++..+...|++++|...++++++.+|+++.++..++.+|...|++++|++.++++.+..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4567778888999999999999999999999999999999999999999999999999999876544
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.62 E-value=0.00011 Score=55.68 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=60.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 673 DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 673 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
++..+..+...+...|++++|...++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356777788889999999999999999999999999999999999999999999999999987654
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.59 E-value=5.8e-05 Score=58.49 Aligned_cols=80 Identities=14% Similarity=0.041 Sum_probs=62.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhCC--CCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCC
Q 041741 647 CMIDCLGRAGHFHEAEMLIDEMP--CKDDPV-IWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGR 723 (748)
Q Consensus 647 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 723 (748)
..+..+.+.|++++|...+++.. .+.++. .+..++..+...|++++|...++++++++|+++.++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 35667788899999999988875 344567 88888888999999999999999999999988776632 55
Q ss_pred hHHHHHHHHHH
Q 041741 724 WDDLRAVRELM 734 (748)
Q Consensus 724 ~~~A~~~~~~~ 734 (748)
..++...|++.
T Consensus 77 ~~~a~~~~~~~ 87 (99)
T 2kc7_A 77 VMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHHH
Confidence 66666666653
No 206
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.54 E-value=5.5e-06 Score=80.51 Aligned_cols=456 Identities=11% Similarity=0.049 Sum_probs=241.8
Q ss_pred chhhhhHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHHHHhcc
Q 041741 53 DIYSWNAILSAQCKSDDLEFAYKLFDEMPERNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVFKASTA 132 (748)
Q Consensus 53 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 132 (748)
...+|..+.++..+.+++.+|+..|-+ ..|+..|..+|.+..+.|.+++...++...++..-.|. .=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHh
Confidence 445788999999999999999887744 35566788999999999999999998877776533333 33466677777
Q ss_pred ccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHH
Q 041741 133 LLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLM 212 (748)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 212 (748)
.++..+.++.+. .|+..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++..|.+.-++
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK- 195 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK- 195 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT-
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh-
Confidence 766655443322 24444445566666667777777666665432 33444455666666666554322
Q ss_pred HHcCCCCCcccHHHHHHHHhccCCCCCcchhcccccccccccchhHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHH
Q 041741 213 IRKAVSIDSVSLSSVLGVCAREGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAE 292 (748)
Q Consensus 213 ~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 292 (748)
.-+..||-.+-.+|... +.+.-|.
T Consensus 196 -----Ans~ktWKeV~~ACvd~---------------------------------------------------~EfrLAq 219 (624)
T 3lvg_A 196 -----ANSTRTWKEVCFACVDG---------------------------------------------------KEFRLAQ 219 (624)
T ss_dssp -----CCSSCSHHHHTHHHHHS---------------------------------------------------CTTTTTT
T ss_pred -----cCChhHHHHHHHHHhCc---------------------------------------------------hHHHHHH
Confidence 23455666666666655 2222221
Q ss_pred HHh-ccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC-----
Q 041741 293 VIF-SNLPERSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGDIKTGREMFDSMPS----- 366 (748)
Q Consensus 293 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----- 366 (748)
-.- .-+..+ .-...++..|-..|.+++.+.+++.-... -......|+.|.-.|++- +.++..+-++..-+
T Consensus 220 icGLniIvha--deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNip 295 (624)
T 3lvg_A 220 MCGLHIVVHA--DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIP 295 (624)
T ss_dssp HHHHHHHCCS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCT
T ss_pred HhcchhcccH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHH
Confidence 110 000000 01112233344556666666666554421 123444555555555543 23333332222211
Q ss_pred ------CCcchHHHHHHHHHccCCHHHHHHHH-------------HHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHH
Q 041741 367 ------PSVSSWNAMLSSYSQSENHKEAIKLF-------------REMQFRGVKPDRTTLAIILSSCAAMGILESGKQVH 427 (748)
Q Consensus 367 ------~~~~~~~~ll~~~~~~~~~~~a~~~~-------------~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 427 (748)
.....|.-++-.|++-.+++.|.... .+.... ..+...|...+.-|....- ...-.++
T Consensus 296 KviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P-~lL~DLL 372 (624)
T 3lvg_A 296 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKP-LLLNDLL 372 (624)
T ss_dssp TTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCC-TTSHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhCh-HHHHHHH
Confidence 34456778888888888888765432 111111 2344444444444433211 0001111
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHH-HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH
Q 041741 428 AASLKTASHIDNYVASGLIGIYSKCQRNELAERVFHRIPELDIVCWN-SMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQF 506 (748)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 506 (748)
..+ ...+.+ ..+++.+.+.+++......+..+...|...-| ++-..|....+++.
T Consensus 373 ~vL-~prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~------------------ 428 (624)
T 3lvg_A 373 MVL-SPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA------------------ 428 (624)
T ss_dssp HHH-CTTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH------------------
T ss_pred Hhc-cccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH------------------
Confidence 110 000000 12234445555555555555555555544433 34445555555432
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCC
Q 041741 507 SFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGY 586 (748)
Q Consensus 507 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 586 (748)
...-+..|-.-.....|.+ +++ .+-...-..-...|.+.++|+++.++.++=. .|.-.|.....+|+
T Consensus 429 -LR~SId~ydNFD~i~LA~r----LEk---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDk-----lykDAietAa~S~~ 495 (624)
T 3lvg_A 429 -LRTSIDAYDNFDNISLAQR----LEK---HELIEFRRIAAYLFKGNNRWKQSVELCKKDS-----LYKDAMQYASESKD 495 (624)
T ss_dssp -HHHTTSSCCCSCTTHHHHH----HHT---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTC-----CTTGGGTTTTTCCC
T ss_pred -HHHHHHHhccccHHHHHHH----Hhh---CchHHHHHHHHHHHHhcccHHHHHHHHHhcc-----cHHHHHHHHHHcCC
Confidence 2222222333333333322 222 1122223344566788889999887765322 12223455567888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHH
Q 041741 587 GDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEI 628 (748)
Q Consensus 587 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 628 (748)
.+-|.++++-.++.| +..+|...+-.|...=+.+-++++
T Consensus 496 ~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 496 TELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 888999999988865 445677888888887777777776
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.53 E-value=0.00039 Score=73.24 Aligned_cols=154 Identities=10% Similarity=0.014 Sum_probs=122.5
Q ss_pred HHcCC-hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCC----------hHHHHHHHHHhhhhhCCCCChhHHHHHH
Q 041741 582 AQNGY-GDEAVRLYKDMIASGVKPDD-ITFVAILTACSHSGL----------VDVGVEIFNSMQLDHGVEPILDHYTCMI 649 (748)
Q Consensus 582 ~~~~~-~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 649 (748)
.+.|. .++|++.++++... .|+. ..|+.-..++...|+ +++++..++.+... .+-+...|..-.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~ 114 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRC 114 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34454 46789999999996 4544 567766666655566 89999999998532 233467788888
Q ss_pred HHHHhcC--ChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhc---
Q 041741 650 DCLGRAG--HFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHA-NVRLAKRAAEELFRLDPKNSAPYSLLANIYSSL--- 721 (748)
Q Consensus 650 ~~~~~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--- 721 (748)
.++.+.| +++++++.++++. .+.+...|..-...+...| .++++.+.++++++.+|.|..++...+.++...
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 8888999 6799999999986 4557888888888888888 899999999999999999999999999998874
Q ss_pred -----------CChHHHHHHHHHHHhcCC
Q 041741 722 -----------GRWDDLRAVRELMSENCI 739 (748)
Q Consensus 722 -----------g~~~~A~~~~~~~~~~~~ 739 (748)
+++++|+++++++....+
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 667899999988765443
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.49 E-value=0.0002 Score=57.32 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=50.9
Q ss_pred HHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 661 AEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 661 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
|...+++.. .+.++..+..++..+...|++++|...++++++.+|+++.++..++.+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444432 2335666666777777777777777777777777777777777777777777777777777776544
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.44 E-value=0.0016 Score=53.84 Aligned_cols=112 Identities=10% Similarity=-0.054 Sum_probs=91.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHh----cCChHH
Q 041741 585 GYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGR----AGHFHE 660 (748)
Q Consensus 585 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 660 (748)
+++++|++.|++..+.| .|+.. +...|...+.+++|+..|++.. +. -+......++.+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa-~~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKAC-EL---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHH-cC---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999999987 45544 7777888888899999999884 33 456777888888888 889999
Q ss_pred HHHHHhhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 041741 661 AEMLIDEMPCKDDPVIWEVLLSSCRL----HANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 661 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 705 (748)
|..++++.....++.....+...|.. .+|+++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988655678888888888887 7899999999999988754
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.41 E-value=8.4e-05 Score=61.81 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=33.9
Q ss_pred HHHHHHHhhCC-CCC-CHhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCC
Q 041741 659 HEAEMLIDEMP-CKD-DPVIWEVLLSSCRLH-----------ANVRLAKRAAEELFRLDPKNS 708 (748)
Q Consensus 659 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~ 708 (748)
++|+..|++.. ..| ....|..+..+|... |++++|+..|+++++++|+++
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 35555555553 222 345555555555544 589999999999999999764
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.37 E-value=0.00031 Score=54.22 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=54.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-chHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 680 LLSSCRLHANVRLAKRAAEELFRLDPKNSA-PYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 680 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
.+..+...|++++|...++++++.+|+++. ++..++.+|...|++++|.+.|+++.+..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 455678899999999999999999999999 999999999999999999999999876544
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.31 E-value=0.00085 Score=64.47 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=45.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCC
Q 041741 671 KDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCI 739 (748)
Q Consensus 671 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (748)
+.++..+..+...+...|++++|...++++++++| +...+..+++++.-.|++++|.+.|+++.+..+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 34566666666555566777777777777777776 455666777777777777777777776655433
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.22 E-value=0.0011 Score=51.20 Aligned_cols=83 Identities=8% Similarity=0.050 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHH
Q 041741 570 NTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMI 649 (748)
Q Consensus 570 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 649 (748)
+...+..+..++...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++......-.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 45556666677777777777777777776653 22345666666777777777777777766643322233333333343
Q ss_pred HHHH
Q 041741 650 DCLG 653 (748)
Q Consensus 650 ~~~~ 653 (748)
..+.
T Consensus 85 ~~l~ 88 (100)
T 3ma5_A 85 DAKL 88 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 214
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.20 E-value=0.0016 Score=66.76 Aligned_cols=123 Identities=10% Similarity=-0.073 Sum_probs=72.7
Q ss_pred HHHcCChhHHHHHHHHHHHcC---C---CCCH-HHHHHHHHHhcCCCChHHHHHHHHHhhhhh-----CCCCC-hhHHHH
Q 041741 581 YAQNGYGDEAVRLYKDMIASG---V---KPDD-ITFVAILTACSHSGLVDVGVEIFNSMQLDH-----GVEPI-LDHYTC 647 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~~---~---~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~-~~~~~~ 647 (748)
+..+|++++|+.++++.++.. + .|+. .+++.|..+|...|++++|..++++..... ...|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666666555421 1 1222 356677777777777777777766653211 12233 345677
Q ss_pred HHHHHHhcCChHHHHHHHhhCC------CCCC-Hh---HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041741 648 MIDCLGRAGHFHEAEMLIDEMP------CKDD-PV---IWEVLLSSCRLHANVRLAKRAAEELFRL 703 (748)
Q Consensus 648 l~~~~~~~g~~~~A~~~~~~~~------~~~~-~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 703 (748)
|+..|...|++++|..++++.. ..|+ |. ....+...+...+.+++|+..++++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888877776652 2332 32 2334444556677788888888887663
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.99 E-value=0.018 Score=55.34 Aligned_cols=142 Identities=11% Similarity=0.007 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHH--HHcC---ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhc----CCC----ChHHHHHHHHHhhhh
Q 041741 570 NTVTWNEMIHGY--AQNG---YGDEAVRLYKDMIASGVKPDD-ITFVAILTACS----HSG----LVDVGVEIFNSMQLD 635 (748)
Q Consensus 570 ~~~~~~~l~~~~--~~~~---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~----~~~----~~~~A~~~~~~~~~~ 635 (748)
+...|...+++. ...+ +..+|..+|++.++. .|+. ..+..+..+|. ..+ ........++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 445555554433 2222 246688888888884 5653 33443333331 100 111111122211111
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 041741 636 HGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLL 714 (748)
Q Consensus 636 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 714 (748)
...+.+...+..++..+...|++++|...++++. ..|+...+..+...+...|++++|.+.+++++.++|.. .++...
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~-~t~~~~ 349 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA-NTLYWI 349 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH-HHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-ChHHHH
Confidence 1224557778888877888899999999999886 55777777777788889999999999999999999955 344433
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.97 E-value=0.00044 Score=69.60 Aligned_cols=59 Identities=8% Similarity=0.027 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCC---cchHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 677 WEVLLSSCRLHANVRLAKRAAEELFRL-----DPKNS---APYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 677 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
++.++.+|...|++++|+..+++++++ .|+.| ..+..||.+|..+|++++|+.+|+++.
T Consensus 343 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 343 MYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 444444455555555555555555542 23222 235555555555555555555555543
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.93 E-value=0.0016 Score=65.74 Aligned_cols=60 Identities=7% Similarity=0.005 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCc---chHHHhHHHhhcCChHHHHHHHHHHH
Q 041741 676 IWEVLLSSCRLHANVRLAKRAAEELFRL-----DPKNSA---PYSLLANIYSSLGRWDDLRAVRELMS 735 (748)
Q Consensus 676 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (748)
+++.++..|...|++++|+..++++++. .|++|. .+..||.+|..+|++++|+.+++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444555555555555555555555543 232222 35555555555555555555555543
No 218
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.85 E-value=0.44 Score=50.08 Aligned_cols=114 Identities=6% Similarity=-0.076 Sum_probs=66.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHH
Q 041741 585 GYGDEAVRLYKDMIASGVKPDDI----TFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHE 660 (748)
Q Consensus 585 ~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 660 (748)
.+.+.|...+......+ ..+.. ....+.......+...++...+.... ...++.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI---MRSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH---HTCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc---ccCCChHHHHHHHHHHHHCCCHHH
Confidence 36778888887776543 22332 23334444555553455555555542 222343344445555567788888
Q ss_pred HHHHHhhCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041741 661 AEMLIDEMPCKD--DPVIWEVLLSSCRLHANVRLAKRAAEELFR 702 (748)
Q Consensus 661 A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 702 (748)
|...++.|...+ .+....-+..++...|+.++|...++.+..
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888886332 233233344456677888888888888764
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.79 E-value=0.0036 Score=57.40 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=55.7
Q ss_pred HHHHHHHhhCC-CCCC---HhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CcchHHHhHHHhhc-CChHHH
Q 041741 659 HEAEMLIDEMP-CKDD---PVIWEVLLSSCRL-----HANVRLAKRAAEELFRLDPKN-SAPYSLLANIYSSL-GRWDDL 727 (748)
Q Consensus 659 ~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 727 (748)
.+|...+++.. ..|+ ...+..++..|.. .|+.++|.+.++++++++|+. ..++...+..+... |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 34444444443 3343 3455555555555 477777888888888887763 77777777777664 777777
Q ss_pred HHHHHHHHhcCCCCCCC
Q 041741 728 RAVRELMSENCIVKDPA 744 (748)
Q Consensus 728 ~~~~~~~~~~~~~~~~~ 744 (748)
.+++++..+..+..+|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 77777777766665555
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.63 E-value=0.0025 Score=52.31 Aligned_cols=93 Identities=15% Similarity=0.049 Sum_probs=69.7
Q ss_pred CChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhhCC-CC-C--CHhHHHHHHHHHHhcCCHHH
Q 041741 620 GLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAG---HFHEAEMLIDEMP-CK-D--DPVIWEVLLSSCRLHANVRL 692 (748)
Q Consensus 620 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~~~~~~ 692 (748)
+....+.+.|.+.. ..+ .++..+...++.++++.+ +.+++..+++... .. | ....+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~-~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEK-AAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHH-HTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHH-ccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 45566677776653 323 377888888999999988 6668999988875 22 4 35666677777899999999
Q ss_pred HHHHHHHHHhcCCCCCcchHHH
Q 041741 693 AKRAAEELFRLDPKNSAPYSLL 714 (748)
Q Consensus 693 a~~~~~~~~~~~p~~~~~~~~l 714 (748)
|.+.++.+++.+|+|.++....
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999876555443
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.59 E-value=0.0095 Score=59.94 Aligned_cols=93 Identities=12% Similarity=-0.031 Sum_probs=60.2
Q ss_pred CCCChHHHHHHHHHhhhhh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCC------CCC-C---HhHHHHHH
Q 041741 618 HSGLVDVGVEIFNSMQLDH--GVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEMP------CKD-D---PVIWEVLL 681 (748)
Q Consensus 618 ~~~~~~~A~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~-~---~~~~~~l~ 681 (748)
..|++++|+.++++..... -+.|+ ..+++.++.+|...|++++|..++++.. ..| . ...++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466777777766653321 12222 3556777788888888888887776652 222 2 34567777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCCCCcc
Q 041741 682 SSCRLHANVRLAKRAAEELFRL-----DPKNSAP 710 (748)
Q Consensus 682 ~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~ 710 (748)
..|...|++++|+..+++++++ .|+.|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 7888888888888888888874 5655444
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.54 E-value=0.0069 Score=46.94 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC---------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchH
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMP---------CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYS 712 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 712 (748)
....-.++..+...|+++.|..+++... ..+.+.++..+..++.+.|+++.|...++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3344567777777777777777776552 1234677888889999999999999999999999998877655
Q ss_pred HHh
Q 041741 713 LLA 715 (748)
Q Consensus 713 ~l~ 715 (748)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.47 E-value=0.0069 Score=49.70 Aligned_cols=65 Identities=11% Similarity=-0.097 Sum_probs=32.3
Q ss_pred CCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 672 DDPVIWEVLLSSCRLHA---NVRLAKRAAEELFRLD-P-KNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 672 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
++..+...+.+++.+++ +.++++..++.+++.+ | ++...++.|+-.|++.|++++|+++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444445555555444 3345555555555544 4 2344555555555555555555555554433
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.36 E-value=0.0099 Score=59.95 Aligned_cols=99 Identities=12% Similarity=0.014 Sum_probs=65.1
Q ss_pred HhcCCCChHHHHHHHHHhhhhh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCC------CCC-C---HhHHH
Q 041741 615 ACSHSGLVDVGVEIFNSMQLDH--GVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEMP------CKD-D---PVIWE 678 (748)
Q Consensus 615 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~-~---~~~~~ 678 (748)
.+...|++++|+.++++..... -+.|+ ..+++.++.+|...|++++|..++++.. ..| . ...++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777664221 12222 4457777888888888888888777652 222 2 34567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCcchHH
Q 041741 679 VLLSSCRLHANVRLAKRAAEELFRL-----DPKNSAPYSL 713 (748)
Q Consensus 679 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~~ 713 (748)
.++..|...|++++|+..+++++++ .|+.|.+...
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 7777888888999998888888884 6666555433
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.33 E-value=0.23 Score=39.07 Aligned_cols=141 Identities=10% Similarity=0.110 Sum_probs=91.9
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHH
Q 041741 581 YAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHE 660 (748)
Q Consensus 581 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 660 (748)
+...|..++..++..+.... .+..-++-++--....-+-+...+.++.+-+-+.+.+= .....++.+|.+.|..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C-~NlKrVi~C~~~~n~~-- 90 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNTL-- 90 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTCC--
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhh-hcHHHHHHHHHHhcch--
Confidence 44578888888888888774 33444555554444455566666666666322222221 1234455555555432
Q ss_pred HHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcCCC
Q 041741 661 AEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSENCIV 740 (748)
Q Consensus 661 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 740 (748)
.......+..+...|.-++-..++..++.-+|.+|..+.-++.+|.+.|+..+|.++++++=++|++
T Consensus 91 -------------se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 -------------NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp -------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred -------------HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 2334445566777888888888888866666668889999999999999999999999988888774
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.30 E-value=0.031 Score=41.94 Aligned_cols=69 Identities=9% Similarity=0.001 Sum_probs=54.0
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041741 639 EPILDHYTCMIDCLGRAGH---FHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN 707 (748)
Q Consensus 639 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 707 (748)
+.+...+..++.++...++ .++|..++++.. .+.++..+..++..+...|++++|...++++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3456777778888865554 688999888875 44457777778888889999999999999999999973
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.13 E-value=0.013 Score=45.40 Aligned_cols=66 Identities=12% Similarity=-0.070 Sum_probs=54.5
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 673 DPVIWEVLLSSCRLHANVRLAKRAAEELFRLD-------PKNSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 673 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
++.....++..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34445577888899999999999999999963 2234579999999999999999999999986643
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.4 Score=40.43 Aligned_cols=130 Identities=13% Similarity=0.114 Sum_probs=78.9
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHH
Q 041741 547 IEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGV 626 (748)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 626 (748)
+......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 44556778888888887766 4667788888888888888888888877554 344444455566665544
Q ss_pred HHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041741 627 EIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEEL 700 (748)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 700 (748)
.+-+.. ...| + ++....++.-.|+++++.+++.+...-|. -.......|-.+.|.++.+.+
T Consensus 81 kla~iA-~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~~r~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIA-QTRE---D---FGSMLLNTFYNNSTKERSSIFAEGGSLPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-HHTT---C---HHHHHHHHHHHTCHHHHHHHHHHTTCHHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-HHCc---c---HHHHHHHHHHcCCHHHHHHHHHHCCChHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 443333 1111 1 33344555667888888888877652221 111233456666666666543
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.71 E-value=0.11 Score=57.97 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=32.8
Q ss_pred HHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041741 549 MYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIA 599 (748)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 599 (748)
.....|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+
T Consensus 661 ~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 345567777777776655 3456777777777777777777777776543
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.69 E-value=0.072 Score=59.60 Aligned_cols=75 Identities=12% Similarity=0.029 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChH
Q 041741 544 SALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVD 623 (748)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 623 (748)
..++..+.+.|.++.|.++.+.- ..-.......|+++.|.++.+. ..+...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHH
Confidence 44455555555555555544311 0112223445555555555332 234455666666666666666
Q ss_pred HHHHHHHHh
Q 041741 624 VGVEIFNSM 632 (748)
Q Consensus 624 ~A~~~~~~~ 632 (748)
.|...|.++
T Consensus 699 ~A~~~y~~~ 707 (814)
T 3mkq_A 699 LAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666666555
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.35 E-value=0.094 Score=41.28 Aligned_cols=90 Identities=17% Similarity=0.055 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHH---HHHHHhhCCCC--C--CHhHHHHHHHHHHhcCCHHHHHH
Q 041741 623 DVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHE---AEMLIDEMPCK--D--DPVIWEVLLSSCRLHANVRLAKR 695 (748)
Q Consensus 623 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~ 695 (748)
..+...|.... ..+ .|+..+--.++.++++..+..+ ++.+++.+... | ....+..+.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~-~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEK-AAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHH-HHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHh-ccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444444442 222 2666777777788887776665 77777776522 3 23445556667889999999999
Q ss_pred HHHHHHhcCCCCCcchHHH
Q 041741 696 AAEELFRLDPKNSAPYSLL 714 (748)
Q Consensus 696 ~~~~~~~~~p~~~~~~~~l 714 (748)
.++.+++.+|+|.++....
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHH
Confidence 9999999999887665544
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.21 E-value=0.038 Score=43.52 Aligned_cols=83 Identities=8% Similarity=-0.172 Sum_probs=63.5
Q ss_pred ChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCcchHHHhHHHhhcCChHHHHH
Q 041741 657 HFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRL---AKRAAEELFRLD-P-KNSAPYSLLANIYSSLGRWDDLRA 729 (748)
Q Consensus 657 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 729 (748)
....+.+.|.+.. ..++..+...+.+++.++++... ++..++.++..+ | .+-..++.|+-.+++.|++++|++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444332 35788888899999988886655 888888888876 5 455789999999999999999999
Q ss_pred HHHHHHhcCC
Q 041741 730 VRELMSENCI 739 (748)
Q Consensus 730 ~~~~~~~~~~ 739 (748)
+.+.+.+..+
T Consensus 96 ~~~~lL~~eP 105 (126)
T 1nzn_A 96 YVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 9999876444
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.18 E-value=0.84 Score=35.96 Aligned_cols=140 Identities=10% Similarity=-0.037 Sum_probs=85.2
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCChHHHH
Q 041741 380 SQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHAASLKTASHIDNYVASGLIGIYSKCQRNELAE 459 (748)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 459 (748)
.-.|..++..+++.+.... .+..-++.++--....-+.+...+.++.+ |.-.|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------HhhhcHHHHH
Confidence 3457777777777776654 34444555554444444444444333332 221121 1234444444
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCC
Q 041741 460 RVFHRIPELDIVCWNSMIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYV 537 (748)
Q Consensus 460 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 537 (748)
..+-.+.. +....+.-++.+..+|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+.-+.|++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44333322 344556667788888888888888888644 34778888888888899999988888888888887754
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.82 E-value=0.075 Score=42.83 Aligned_cols=103 Identities=9% Similarity=0.048 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHhcCCCCh------HHHHHHHHHhhhhhCCCCChh-HHHHHHH------HHHhcCChHHHHHHHhhCC
Q 041741 603 KPDDITFVAILTACSHSGLV------DVGVEIFNSMQLDHGVEPILD-HYTCMID------CLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 603 ~p~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~ 669 (748)
+-|..+|-..+....+.|+. +...++|++... .++|+.. .+...+. .+...++.++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34556666666666666777 777778877642 4455421 1111111 1234477777887777763
Q ss_pred --CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041741 670 --CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKN 707 (748)
Q Consensus 670 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 707 (748)
++.-..+|......-.++|+..+|..++.+++.+.|.+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 34446777777777777888888888888888877754
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.81 E-value=1.6 Score=36.84 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=88.0
Q ss_pred cCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 041741 516 AKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYK 595 (748)
Q Consensus 516 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 595 (748)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+...++-+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHH
Confidence 3567778887776654 3677889999999999999999999988764 4445556667788777666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 596 DMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 596 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
.....| -++.....+...|+++++++++.+. |--|. -+......|..+.|.++.+++.
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~----~r~~e------A~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG----GSLPL------AYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT----TCHHH------HHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC----CChHH------HHHHHHHcCcHHHHHHHHHHhC
Confidence 555554 2455566677889999999998766 22221 1122233577778888887764
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.34 E-value=0.085 Score=48.51 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhc-----CChHHHHHHHhhCC-CCC--CHhHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCC
Q 041741 644 HYTCMIDCLGRA-----GHFHEAEMLIDEMP-CKD--DPVIWEVLLSSCRL-HANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 644 ~~~~l~~~~~~~-----g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~p~ 706 (748)
.+..++..|... |+.++|.+.|++.. ..| +......+...++. .|+.+++.+.++++++..|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 455555556553 67777777776664 344 25555556666555 37777777777777777764
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.079 Score=56.67 Aligned_cols=58 Identities=10% Similarity=-0.015 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 677 WEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 677 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
+..-...+...|+++-|..+.++++...|.+-.++..|+.+|...|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3334455778899999999999999999999999999999999999999999988865
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.12 E-value=0.29 Score=39.23 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=54.9
Q ss_pred CCCChhHHHHHHHHHHhcCChH---HHHHHHhhCC-CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcch
Q 041741 638 VEPILDHYTCMIDCLGRAGHFH---EAEMLIDEMP-CKD--DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPY 711 (748)
Q Consensus 638 ~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 711 (748)
-.|+..+--.++.++.+..+.+ +++.+++.+. ..| ....+..+.-++.+.|++++|.+..+.+++.+|+|.++.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 3677777778888888877654 5667777664 223 244555666678889999999999999999999875554
Q ss_pred HH
Q 041741 712 SL 713 (748)
Q Consensus 712 ~~ 713 (748)
.+
T Consensus 115 ~L 116 (144)
T 1y8m_A 115 AL 116 (144)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.11 E-value=8.4 Score=42.30 Aligned_cols=257 Identities=11% Similarity=0.024 Sum_probs=140.8
Q ss_pred HHHhcCCHHHHHHHhccCCCC----Ccch--HHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCC---Hhh----HHHHH
Q 041741 347 ACVRSGDIKTGREMFDSMPSP----SVSS--WNAMLSSYSQSENHKEAIKLFREMQFRGV--KPD---RTT----LAIIL 411 (748)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~---~~~----~~~ll 411 (748)
+....|+.++++..++..... +..+ -..+.-+.+..|..+++..++.......- .-+ ... ...+-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 566889999999999887651 2221 22333455666766678887777665421 011 111 11122
Q ss_pred HHhhccCChHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHhcCChHHHHHHHhhCCCC-Ccch--HHHHHHHHHhCCCch
Q 041741 412 SSCAAMGILESGKQVHAASLKTASHI-DNYVASGLIGIYSKCQRNELAERVFHRIPEL-DIVC--WNSMIAGLSLNSLDI 487 (748)
Q Consensus 412 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--~~~li~~~~~~~~~~ 487 (748)
.++...++. .+.+.+..++...... ......++...+.-.|+.+....+++.+.+. +... ...+.-++...|+.+
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 233334443 3334444333322111 1122234455566677777777776654321 2222 233334455788888
Q ss_pred HHHHHHHHHHHCCCCCCHHH--HHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhh
Q 041741 488 EAFMFFKQMRQNEMYPTQFS--FATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDM 565 (748)
Q Consensus 488 ~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (748)
.+..+.+.+.... .|.... ...+.-+|+..|+......++..+.... ..++.....+.-++...|+.+.+.++++.
T Consensus 542 ~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 542 LADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 8888888887642 222221 2244557888999888888888887642 22344333444455556777777788775
Q ss_pred cCC-CCHHHH--HHHHHHHHHcCCh-hHHHHHHHHHHHcCCCCCHHHH
Q 041741 566 MHG-KNTVTW--NEMIHGYAQNGYG-DEAVRLYKDMIASGVKPDDITF 609 (748)
Q Consensus 566 ~~~-~~~~~~--~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~ 609 (748)
+.+ .|+..- ..+.-+....|.. .+++.++..+.. .+|..+-
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 543 344332 2333444445544 578889988875 4555443
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.65 E-value=0.13 Score=40.54 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=54.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCh---HHHHHHHhhCC-CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 041741 637 GVEPILDHYTCMIDCLGRAGHF---HEAEMLIDEMP-CKD--DPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAP 710 (748)
Q Consensus 637 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 710 (748)
+-.|+..+--.++.++.+..+. .+++.+++.+. ..| ....+..+.-++.+.|++++|.+..+.+++.+|+|.++
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4456777777788888877755 35666766663 233 24556666677888899999999999999999988665
Q ss_pred hHHH
Q 041741 711 YSLL 714 (748)
Q Consensus 711 ~~~l 714 (748)
....
T Consensus 115 ~~Lk 118 (134)
T 3o48_A 115 GALK 118 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.52 E-value=5.9 Score=39.90 Aligned_cols=185 Identities=8% Similarity=0.032 Sum_probs=108.7
Q ss_pred CCchHHHHHHHHHHHC-----CCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCC-ch--HHHHHHHHHHHhcCC
Q 041741 484 SLDIEAFMFFKQMRQN-----EMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVN-DI--FVGSALIEMYCKCGD 555 (748)
Q Consensus 484 ~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~l~~~~~~~g~ 555 (748)
|++++|++.+..+.+. ....+......++..|...++++...+.+..+.+..... .. .+...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 3455565555444431 233345566667777777777777766666555442222 11 111222222222332
Q ss_pred HH--HHHHHhhhcCC---C-------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCCH---HHHHHHHHHhcC
Q 041741 556 IY--GARQFFDMMHG---K-------NTVTWNEMIHGYAQNGYGDEAVRLYKDMIAS--GVKPDD---ITFVAILTACSH 618 (748)
Q Consensus 556 ~~--~A~~~~~~~~~---~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~---~~~~~l~~~~~~ 618 (748)
.+ .-..+.+.+.. . .......|...+...|++.+|..++..+... |..+.. ..+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22233333221 1 1223456788899999999999999997753 222221 356667788899
Q ss_pred CCChHHHHHHHHHhhh-hhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhC
Q 041741 619 SGLVDVGVEIFNSMQL-DHGVEPI----LDHYTCMIDCLGRAGHFHEAEMLIDEM 668 (748)
Q Consensus 619 ~~~~~~A~~~~~~~~~-~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 668 (748)
.+++..|..++.++.. .....++ ...+...+..+...+++.+|...|.++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999988732 1222222 234667788888999999998887665
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.34 E-value=0.87 Score=36.83 Aligned_cols=99 Identities=13% Similarity=0.211 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHcCCCCCHH----HHHHHHH---HhcCCCChHHHHHHHHHhhh
Q 041741 568 GKNTVTWNEMIHGYAQNGYG------DEAVRLYKDMIASGVKPDDI----TFVAILT---ACSHSGLVDVGVEIFNSMQL 634 (748)
Q Consensus 568 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~l~~---~~~~~~~~~~A~~~~~~~~~ 634 (748)
..|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|..+-- .+...++.++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45788888888888888998 8899999999886 677642 1211111 11233899999999999954
Q ss_pred hhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 635 DHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 635 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
. .+-=...+...++.=.+.|+.+.|.+++.+..
T Consensus 89 ~--hKkFAKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 89 N--CKKFAFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp H--CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H--hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 3 22226667777777889999999999998774
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.96 E-value=11 Score=35.70 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHH----HHHHHcCCCCCcccHHHHHHHHh
Q 041741 157 VANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMF----RLMIRKAVSIDSVSLSSVLGVCA 232 (748)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~~~~~t~~~ll~~~~ 232 (748)
+|.++..-|.+++++++|.+++-. -...+.+.|....|.++. +...+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 356667778999999999987753 344566778876665554 66667889999988888888887
Q ss_pred ccCCCCCcchhcccccccccccchhHHHHHHHHhc--CCCchHHHHHHHHHHHhcCChhHHHHHhccCCCCCcccHHHHH
Q 041741 233 REGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLG--FEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPERSVVSWNVMI 310 (748)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 310 (748)
..... ..++.........+-.+.| ..-|+.....+...|.+.+++.+|+..|-.-.++++..|..++
T Consensus 106 ~~~~~-----------~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL 174 (336)
T 3lpz_A 106 LFQPG-----------EPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARME 174 (336)
T ss_dssp TSCTT-----------CHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred hCCCC-----------CcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHH
Confidence 65311 1111111333333444444 2346677778888888888888888887432222224444444
Q ss_pred HHH
Q 041741 311 AGY 313 (748)
Q Consensus 311 ~~~ 313 (748)
.-+
T Consensus 175 ~ew 177 (336)
T 3lpz_A 175 YEW 177 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.94 E-value=0.38 Score=47.67 Aligned_cols=58 Identities=12% Similarity=0.007 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 679 VLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 679 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.++..+...|+++++...+..++..+|-+...+..|..+|...|+..+|+++|+..++
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556677777777777777777777777777777777777777777777776654
No 245
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.87 E-value=7.3 Score=38.10 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=11.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 041741 577 MIHGYAQNGYGDEAVRLYKDMIA 599 (748)
Q Consensus 577 l~~~~~~~~~~~~a~~~~~~m~~ 599 (748)
++..|...|++.+|.+++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444445555555444444444
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.66 E-value=2 Score=34.47 Aligned_cols=68 Identities=9% Similarity=-0.005 Sum_probs=48.8
Q ss_pred CCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CCcchHHHhHHHhhcCChHHHHHHHHHHHhcC
Q 041741 671 KDDPVIWEVLLSSCRLHAN---VRLAKRAAEELFRLDPK-NSAPYSLLANIYSSLGRWDDLRAVRELMSENC 738 (748)
Q Consensus 671 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (748)
.|++.+...+.+++.++.+ ..+++.+++.+....|. .-..++.|+-.+++.|++++|+++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4677777777777776653 45677777777777773 34578888888888888888888888776543
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.58 E-value=11 Score=35.30 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHH----HHHHHHcCCCCCcccHHHHHHHHh
Q 041741 157 VANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEM----FRLMIRKAVSIDSVSLSSVLGVCA 232 (748)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~~~~~t~~~ll~~~~ 232 (748)
+|.++..-|.+++++++|.+++.. -...+.+.|....|.++ ++...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 466677778899999999987754 34456677887776665 555566789999888888888876
Q ss_pred ccCCCCCcchhcccccccccccchhHHHHHHHHhcC--CCchHHHHHHHHHHHhcCChhHHHHHhc
Q 041741 233 REGCGVESDVFAQSDNKFSRNVHGQQVHCLTIKLGF--EADLHLSNSLLDMYAKNGDMDSAEVIFS 296 (748)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~ 296 (748)
..... ...+.........+-.+.|- .-++.....+...|.+.|++.+|+..|-
T Consensus 104 ~~p~~-----------~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPS-----------EPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTT-----------CTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCC-----------CchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 64211 11111112223333333332 2367778888888888888888888775
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.36 E-value=0.84 Score=36.05 Aligned_cols=66 Identities=9% Similarity=0.003 Sum_probs=40.0
Q ss_pred CCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CCcchHHHhHHHhhcCChHHHHHHHHHHHh
Q 041741 671 KDDPVIWEVLLSSCRLHAN---VRLAKRAAEELFRLDPK-NSAPYSLLANIYSSLGRWDDLRAVRELMSE 736 (748)
Q Consensus 671 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (748)
.|++.+...+.+++.++.+ ..+++.+++.+.+.+|. .-..++.|+-.+++.|++++|+++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4555665566666555543 34566666666666653 345666666777777777777776666544
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.33 E-value=2.2 Score=38.66 Aligned_cols=124 Identities=12% Similarity=0.064 Sum_probs=76.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCCh
Q 041741 579 HGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHF 658 (748)
Q Consensus 579 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 658 (748)
....+.|+.++++.....-++.. +-|...-..+++.++-.|+++.|..-++... ...|+......+.+.+.++.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a---~l~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCchhhHHHHHHHHHHHHH--
Confidence 34567788888888888888763 5566666778888899999999988888763 33455332222222222221
Q ss_pred HHHHH-HHhhC--C--CCCCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCc
Q 041741 659 HEAEM-LIDEM--P--CKDDPVIWEVLLSS--CRLHANVRLAKRAAEELFRLDPKNSA 709 (748)
Q Consensus 659 ~~A~~-~~~~~--~--~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~ 709 (748)
.... +|..- + ....+.....++.+ ....|+.++|.+.-.++.+..|..+.
T Consensus 79 -~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 -QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp -HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred -HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1121 22211 1 12223334444444 44579999999999999999886554
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.47 E-value=1.3 Score=36.57 Aligned_cols=125 Identities=10% Similarity=0.056 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcC-----CCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHH-HH
Q 041741 544 SALIEMYCKCGDIYGARQFFDMMH-----GKNT-------VTWNEMIHGYAQNGYGDEAVRLYKDMIASG-VKPDDI-TF 609 (748)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~-~~ 609 (748)
-.-+..+...|.++.|+-+.+.+. .++. .++..+.+++...+++.+|...|++.++.. .-+... +.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 344566677788888877766543 1221 144556677778888888888887765421 111111 11
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CCHhHHHHHHH
Q 041741 610 VAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMPCK-DDPVIWEVLLS 682 (748)
Q Consensus 610 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~ 682 (748)
..+. ...... ......++.+.--.++.||.+.|++++|+..++.++.+ .++.+-..|..
T Consensus 104 ~~~~----~~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 104 PSTG----NSASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLAN 163 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHH
T ss_pred cccc----ccCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHH
Confidence 0000 000000 00112233444445788888888888888888888733 34444444443
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.10 E-value=0.94 Score=37.48 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=58.2
Q ss_pred HHHHHhcCCCChHHHHHHHHHhhhhhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHhhCC-----CCCCHhHHH
Q 041741 611 AILTACSHSGLVDVGVEIFNSMQLDHGVEPIL-------DHYTCMIDCLGRAGHFHEAEMLIDEMP-----CKDDPVIWE 678 (748)
Q Consensus 611 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 678 (748)
.-++.+...|.++.|+-+.+.+....+..|+. .++..+++++...|++..|...|++.. ....+....
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33455566677777776666543333333431 234556666777777777776666531 000000000
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 679 VLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 679 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
.+. . ... ...-..+ +.+...-+.++.+|.+.|++++|+.+++.+
T Consensus 105 ~~~-~--~ss--------~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 105 STG-N--SAS--------TPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccc-c--cCC--------Ccccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 000 0 000 0000011 223356688999999999999999999954
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.56 E-value=11 Score=37.91 Aligned_cols=184 Identities=9% Similarity=0.087 Sum_probs=102.2
Q ss_pred CCchhHHHHHHHHHHh-----CCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHHHHHHHHHHH----HHcCC
Q 041741 519 SSSFQGRQVHAQIEKD-----GYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGK---NTVTWNEMIHGY----AQNGY 586 (748)
Q Consensus 519 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~----~~~~~ 586 (748)
++++.|.+.+-.+.+. ...........++..+...|+++...+.+..+.+. -......+++.+ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5667777766666653 33445777888999999999999987776655432 122222333322 22222
Q ss_pred hhHH--HHHHHHHHH--cC-CCCC---HHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC----hhHHHHHHHHHHh
Q 041741 587 GDEA--VRLYKDMIA--SG-VKPD---DITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI----LDHYTCMIDCLGR 654 (748)
Q Consensus 587 ~~~a--~~~~~~m~~--~~-~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 654 (748)
.+.. +.+.+.... .| +... ......|...+...|++.+|..++..+..+..-..+ ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2211 111111110 11 1111 122345667778888888888888887543322222 3456667778888
Q ss_pred cCChHHHHHHHhhCC-----CCCCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041741 655 AGHFHEAEMLIDEMP-----CKDDPV----IWEVLLSSCRLHANVRLAKRAAEELFR 702 (748)
Q Consensus 655 ~g~~~~A~~~~~~~~-----~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 702 (748)
.+++.+|..+++++. ..+.+. .+...+..+...+++.+|-..|..+.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888888888877752 222222 233334445556666666666555543
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.74 E-value=5.1 Score=39.51 Aligned_cols=74 Identities=9% Similarity=0.073 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhh----hhCCCCChhHHHHH
Q 041741 574 WNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQL----DHGVEPILDHYTCM 648 (748)
Q Consensus 574 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l 648 (748)
...++..+...|++.+++..+..+.... +-+...+..++.++...|+..+|++.|+.+.. +.|+.|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445677778889999998888888763 55777888999999999999999988887632 46888887654333
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.52 E-value=1.4 Score=39.87 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=38.3
Q ss_pred HHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041741 651 CLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK 706 (748)
Q Consensus 651 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 706 (748)
.+.+.|++++|++.++.-. .+-|...-..++..++-.|++++|..-++.+.+++|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 4556777777777665543 3335666666777777777777777777777777774
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.94 E-value=4.7 Score=29.89 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=44.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHH
Q 041741 100 LEEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLS 163 (748)
Q Consensus 100 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (748)
+.-+..+-++.+....+.|++......+++|.+.+|+..|.++++-++..-... ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-hhhHHHHHH
Confidence 344566677777777788888888888888888888888888888776554222 345655554
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.43 E-value=5.4 Score=42.83 Aligned_cols=52 Identities=12% Similarity=0.025 Sum_probs=36.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCChHHHHHHHHHh
Q 041741 579 HGYAQNGYGDEAVRLYKDMIASGVKPDD-ITFVAILTACSHSGLVDVGVEIFNSM 632 (748)
Q Consensus 579 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~ 632 (748)
.-+...|+++-|+++-++.... .|+. .+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455567777777777777774 4543 57777777777777777777777766
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.59 E-value=6.7 Score=29.08 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHH
Q 041741 589 EAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMID 650 (748)
Q Consensus 589 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 650 (748)
+..+-++.+....+.|++......+++|-+.+++..|+++++.+..+.+.. ..+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 455666667777778888888888888888888888888888774333333 445555553
No 258
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=82.54 E-value=24 Score=30.76 Aligned_cols=167 Identities=13% Similarity=0.057 Sum_probs=103.8
Q ss_pred hhhhhhhhcCCCCchhhhhHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 041741 40 HSAQHLFDKMPHKDIYSWNAILSAQCKSDDLEFAYKLFDEMPERNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPT 119 (748)
Q Consensus 40 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 119 (748)
+....+.+.+..++...-...+..+.+.++.+....+.+.+..++...-...+.++...++.+ +...+..+.. .++
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~ 94 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DED 94 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSS
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCC
Confidence 333444444555666666667777777777555555566566666666666666777776643 4444444443 356
Q ss_pred cchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcC
Q 041741 120 HITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKT 199 (748)
Q Consensus 120 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 199 (748)
...-...+.++.+.++.+....+...+ -.++..+-...+.++...|..+....+.+.+..++...-...+.++.+.
T Consensus 95 ~~vr~~a~~aL~~~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 95 GWVRQSAAVALGQIGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHH----hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 566666777777777654444433322 2467777777888888888766555555555567776666777777777
Q ss_pred CCHHHHHHHHHHHHHc
Q 041741 200 DRVVEALEMFRLMIRK 215 (748)
Q Consensus 200 g~~~~a~~~~~~m~~~ 215 (748)
+. .++...+..+.+.
T Consensus 171 ~~-~~~~~~L~~~l~d 185 (211)
T 3ltm_A 171 GG-ERVRAAMEKLAET 185 (211)
T ss_dssp CS-HHHHHHHHHHHHH
T ss_pred Cc-hhHHHHHHHHHhC
Confidence 76 4566666666654
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.75 E-value=10 Score=27.88 Aligned_cols=79 Identities=10% Similarity=-0.071 Sum_probs=57.1
Q ss_pred cCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041741 134 LDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMI 213 (748)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 213 (748)
...++|.-+-+.+...+. ...+--.-+..+...|+|++|..+.+...-||...|-.+.. .+.|-.+++..-+..+-
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345666666666666554 33333334455678999999999999999999999987765 46888888888887777
Q ss_pred HcC
Q 041741 214 RKA 216 (748)
Q Consensus 214 ~~g 216 (748)
.+|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 664
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.50 E-value=11 Score=27.80 Aligned_cols=79 Identities=13% Similarity=-0.029 Sum_probs=55.4
Q ss_pred cCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041741 134 LDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMI 213 (748)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 213 (748)
...++|.-+-+.+...+. ...+--.-+..+...|+|++|..+.+...-||...|-.+.. .+.|-.+++..-+..+-
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345666666666666554 33333334455678999999999999999999999988765 45777777777776766
Q ss_pred HcC
Q 041741 214 RKA 216 (748)
Q Consensus 214 ~~g 216 (748)
.+|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 554
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.36 E-value=40 Score=31.88 Aligned_cols=109 Identities=14% Similarity=0.086 Sum_probs=62.7
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHH----HHHHHHcCCCCCHhhHHHHHHHhhccCC
Q 041741 344 MLVACVRSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKL----FREMQFRGVKPDRTTLAIILSSCAAMGI 419 (748)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 419 (748)
+..-|.+.+++++|.+++-. -...+.+.|+...+-++ ++-+.+.++++|......++..+.....
T Consensus 41 i~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~ 109 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP 109 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 33345555666666555322 12234455665544443 4556667788888777777776665543
Q ss_pred hH-HHHHHHHHH----Hhhc--CCchhHHHHHHHHHHHhcCChHHHHHHHh
Q 041741 420 LE-SGKQVHAAS----LKTA--SHIDNYVASGLIGIYSKCQRNELAERVFH 463 (748)
Q Consensus 420 ~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 463 (748)
-+ .-..+...+ .+.| ..-++.+...+...|.+.+++.+|+.-|-
T Consensus 110 ~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 110 GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 21 112222222 2233 33467777888888888888888888774
No 262
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=78.27 E-value=32 Score=29.60 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=83.2
Q ss_pred cCCCCchhhhhHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHHHHH
Q 041741 48 KMPHKDIYSWNAILSAQCKSDDLEFAYKLFDEMPERNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLASVF 127 (748)
Q Consensus 48 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 127 (748)
.+..+|...-...+..+.+.++.+....+.+.+..++...-...+.++...++.+ +...+..+.. .++...-...+
T Consensus 22 ~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 22 NLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp HTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 3333455555555555555555444444444444455544444555555555443 3333333333 24555555555
Q ss_pred HHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHH
Q 041741 128 KASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALE 207 (748)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 207 (748)
.++...++.+....+...+ -.++..+-...+.++...|..+....+.+.+..++...-...+.++...|. .++..
T Consensus 98 ~aL~~~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~ 172 (201)
T 3ltj_A 98 VALGQIGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRA 172 (201)
T ss_dssp HHHHHHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHH
T ss_pred HHHHHhCcHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHH
Confidence 6666665544333333322 244566666667777777765555555555555666666666666666665 44556
Q ss_pred HHHHHHHc
Q 041741 208 MFRLMIRK 215 (748)
Q Consensus 208 ~~~~m~~~ 215 (748)
.+..+.+.
T Consensus 173 ~L~~~l~d 180 (201)
T 3ltj_A 173 AMEKLAET 180 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 66666543
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.34 E-value=25 Score=40.52 Aligned_cols=163 Identities=10% Similarity=0.022 Sum_probs=75.2
Q ss_pred HHHHHHHccCCchhhhhhhhcCCCCchhhhhHHHHHhhcCCChhHHHHhhccCCC---CCchhHHHHHHHHHhcCChhHH
Q 041741 28 RLIELYSKCNNTHSAQHLFDKMPHKDIYSWNAILSAQCKSDDLEFAYKLFDEMPE---RNVVSWNNLISALVRNGLEEKA 104 (748)
Q Consensus 28 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 104 (748)
.++..+...+..+.+.++..-.++... .-..+.+.+...|++++|...|.+... .+..... ...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~~~-~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~----------~~~-- 883 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSDPI-AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA----------VLR-- 883 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCCHH-HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS----------SHH--
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCcH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh----------hhc--
Confidence 345555566666666665554443222 223455566666777777777765432 0000000 000
Q ss_pred HHHHHHHHhCCC--CCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCc----HhHHHHHHHHHHhcCChhhHHHHH
Q 041741 105 LSVYNKMSNEGF--VPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKN----IYVANALLSLYAKCGWTKHAVPVF 178 (748)
Q Consensus 105 ~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~ 178 (748)
-+..+..... ..-..-|.-++..+.+.+.++.+.+.-....+...+.+ ...|..+.+.+...|++++|...+
T Consensus 884 --~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 884 --EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp --HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred --ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 0000000000 00011244455555555555555555444444322111 124566667777777777776666
Q ss_pred hcCCC--CCeehHHHHHHHHHcCCCHHHH
Q 041741 179 EEMSE--PNEVTFTAMMSGLAKTDRVVEA 205 (748)
Q Consensus 179 ~~~~~--~~~~~~~~li~~~~~~g~~~~a 205 (748)
-.++. .-......++..+|..|..+.-
T Consensus 962 ~~~pd~~~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 962 MVLSTTPLKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHCCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHhCCChhhh
Confidence 54432 2233455566666666654443
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.00 E-value=28 Score=40.18 Aligned_cols=82 Identities=15% Similarity=0.003 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC--C-CCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHh
Q 041741 643 DHYTCMIDCLGRAGHFHEAEMLIDEMP--C-KDDP----VIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLA 715 (748)
Q Consensus 643 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 715 (748)
.-|..++..+.+.|.++.+.++.+... . +.++ ..|..+...+...|++++|..++-..-... --...+..|.
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-~r~~cLr~LV 978 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-LKKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-SCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-HHHHHHHHHH
Confidence 345566666666777666665544331 1 1111 245556666666677777666664432111 1223455555
Q ss_pred HHHhhcCChH
Q 041741 716 NIYSSLGRWD 725 (748)
Q Consensus 716 ~~~~~~g~~~ 725 (748)
...+..|..+
T Consensus 979 ~~lce~~~~~ 988 (1139)
T 4fhn_B 979 NQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHCCHH
T ss_pred HHHHhCCChh
Confidence 5555555433
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.12 E-value=52 Score=30.85 Aligned_cols=164 Identities=10% Similarity=0.079 Sum_probs=87.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCchHHHH----HHHHHHHCCCCCCHHHHHHHHHhhcCCC
Q 041741 444 GLIGIYSKCQRNELAERVFHRIPELDIVCWNSMIAGLSLNSLDIEAFM----FFKQMRQNEMYPTQFSFATVLSSCAKLS 519 (748)
Q Consensus 444 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 519 (748)
.+..-|.+.+++++|.+++.. -...+.+.|+...|.+ +.+-..+.+.+++......++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 334445555566655554422 1223444555544433 3455556677888777777776665432
Q ss_pred Cch-hHHHHHHHHH----HhCC--CCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHc---CChhH
Q 041741 520 SSF-QGRQVHAQIE----KDGY--VNDIFVGSALIEMYCKCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQN---GYGDE 589 (748)
Q Consensus 520 ~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ 589 (748)
..+ .-..+++.+. +.|- .-++.....+...|.+.|++.+|+..|-.....+...+..++.-+... |...+
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch
Confidence 211 1223333333 3332 237888889999999999999999987633322444444444333322 22111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhh
Q 041741 590 AVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQ 633 (748)
Q Consensus 590 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 633 (748)
+ +... ...+--|...|+...|..+++...
T Consensus 187 ~--------------dlf~-~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 187 V--------------AEFF-SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp H--------------HHHH-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred H--------------HHHH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1 1111 122223445677888888877664
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.37 E-value=22 Score=26.22 Aligned_cols=83 Identities=10% Similarity=0.147 Sum_probs=59.1
Q ss_pred ChhHHHHHHHHHHhcCCCCChhhHHHHH--HHHHhcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHH
Q 041741 318 QSTKAIELLQRMKSCGFEPDEVTSINML--VACVRSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREM 395 (748)
Q Consensus 318 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 395 (748)
..++|..+-+.+...+. .-...+| ..+.+.|++++|..+.+.+..||...|.+|-.. +.|..+.+...+..+
T Consensus 21 ~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp CHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 45677777776666543 2223333 367789999999999999998999888877654 788888888888888
Q ss_pred HHcCCCCCHhhH
Q 041741 396 QFRGVKPDRTTL 407 (748)
Q Consensus 396 ~~~g~~p~~~~~ 407 (748)
..+| .|....|
T Consensus 95 a~sg-~p~~q~F 105 (115)
T 2uwj_G 95 GGSS-DPALADF 105 (115)
T ss_dssp HTCS-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7765 3444443
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.81 E-value=19 Score=30.97 Aligned_cols=50 Identities=18% Similarity=0.023 Sum_probs=37.8
Q ss_pred cCChHHHHHHHhhCC----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041741 655 AGHFHEAEMLIDEMP----CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLD 704 (748)
Q Consensus 655 ~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 704 (748)
.++..++..+|.-|. ...-...|...+..+-..|++.+|.++++..++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444667777777663 44567788888888888899999999999888854
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.44 E-value=24 Score=26.11 Aligned_cols=83 Identities=11% Similarity=0.160 Sum_probs=58.0
Q ss_pred ChhHHHHHHHHHHhcCCCCChhhHHHHH--HHHHhcCCHHHHHHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHH
Q 041741 318 QSTKAIELLQRMKSCGFEPDEVTSINML--VACVRSGDIKTGREMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREM 395 (748)
Q Consensus 318 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 395 (748)
..++|..+-+.+...+. .-...+| ..+.+.|++++|..+.+.+..||...|.+|-.. +.|..+.+...+..+
T Consensus 22 ~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp CHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 45667777666666543 2223333 366789999999999999998999888877654 678888888888777
Q ss_pred HHcCCCCCHhhH
Q 041741 396 QFRGVKPDRTTL 407 (748)
Q Consensus 396 ~~~g~~p~~~~~ 407 (748)
..+| .|....|
T Consensus 96 a~sg-~p~~q~F 106 (116)
T 2p58_C 96 ARSQ-DPRIQTF 106 (116)
T ss_dssp TTCC-CHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7664 3443333
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.96 E-value=15 Score=36.74 Aligned_cols=89 Identities=7% Similarity=-0.022 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC-----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCcc----hHH
Q 041741 645 YTCMIDCLGRAGHFHEAEMLIDEMP-----CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPK--NSAP----YSL 713 (748)
Q Consensus 645 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~----~~~ 713 (748)
...+++.|.+.|++++|.+.+.++. .+.-...+...+..+...+|+..+...++++...-.. ++.. ...
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 3445555555555555555555442 1111234444444555555555555555555443111 1111 122
Q ss_pred HhHHHhhcCChHHHHHHHHH
Q 041741 714 LANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 714 l~~~~~~~g~~~~A~~~~~~ 733 (748)
-|..+...+++.+|...|-+
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e 233 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVD 233 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHH
Confidence 33334455555555555444
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.57 E-value=13 Score=29.31 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHH
Q 041741 101 EEKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLS 163 (748)
Q Consensus 101 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (748)
.-+..+-++.+....+.|++......+++|.+.+|+..|.++++-++..-.. ...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~-~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-chhhHHHHHH
Confidence 3345566666666777788888888888888888888888887777655322 2444555543
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.04 E-value=16 Score=28.83 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHH
Q 041741 589 EAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMID 650 (748)
Q Consensus 589 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 650 (748)
+..+-++.+...++.|++......+++|-+.+|+..|+.+|+.+..+.+ +...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3555666666677888888888888888888888888888888743333 33445655554
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.91 E-value=57 Score=29.74 Aligned_cols=53 Identities=9% Similarity=0.022 Sum_probs=27.9
Q ss_pred HHHHHHHccCCchhhhhhhhcCCCCchh---hhhHHHHHhhcCCChhHHHHhhccC
Q 041741 28 RLIELYSKCNNTHSAQHLFDKMPHKDIY---SWNAILSAQCKSDDLEFAYKLFDEM 80 (748)
Q Consensus 28 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~ 80 (748)
+.+....+.|+.+....+++.-..++.. .-...+...+..|+.+-+..+++.-
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 4455556666666666666654432211 1123444445556666666666543
No 273
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=71.56 E-value=84 Score=31.19 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=26.7
Q ss_pred HHHHHHHccCCchhhhhhhhcCCCCchh--hhhHHHHHhhcCCChhHHHHhhcc
Q 041741 28 RLIELYSKCNNTHSAQHLFDKMPHKDIY--SWNAILSAQCKSDDLEFAYKLFDE 79 (748)
Q Consensus 28 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 79 (748)
+.+...+..|+.+....+++.-..++.. .....+...+..|+.+-+.-+++.
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 4455556666666666666654433321 112233344455666666655554
No 274
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=70.91 E-value=59 Score=32.34 Aligned_cols=165 Identities=10% Similarity=0.081 Sum_probs=86.2
Q ss_pred HHHHHHHHhCCCCCcch--hhHHHHHHHccCCchhhhhhhhcCCCCc---hhhhhHHHHHhhcCCChhHHHHhhccCCCC
Q 041741 9 LLHAHILRNGLFDDTFL--CNRLIELYSKCNNTHSAQHLFDKMPHKD---IYSWNAILSAQCKSDDLEFAYKLFDEMPER 83 (748)
Q Consensus 9 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 83 (748)
.+...+++.|..|+... ..+.+...+..|+.+-+..+++.-...+ .... ..+...+..|+.+-+.-+++.-..+
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~ 106 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLENNANP 106 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHHHHHHHhCCCCC
Confidence 46777888898887553 4567778888999999888888755432 2223 3344455668888777777754433
Q ss_pred Cchh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcch--HHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhH--
Q 041741 84 NVVS--WNNLISALVRNGLEEKALSVYNKMSNEGFVPTHIT--LASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYV-- 157 (748)
Q Consensus 84 ~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 157 (748)
+... -.+.+...+..|+.+-+..++ +.+..++... -.+.+...+..|+.+-+ +.+.+.|..++...
T Consensus 107 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~ 178 (437)
T 1n11_A 107 NLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVA----ELLLERDAHPNAAGKN 178 (437)
T ss_dssp TCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCSS
T ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCCCCC
Confidence 2211 112233344566655444333 3343322111 11223334445555433 33444554433210
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCC
Q 041741 158 ANALLSLYAKCGWTKHAVPVFEEMS 182 (748)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~ 182 (748)
-...+...+..|+.+-+.-+++.-.
T Consensus 179 g~t~L~~A~~~~~~~~v~~Ll~~g~ 203 (437)
T 1n11_A 179 GLTPLHVAVHHNNLDIVKLLLPRGG 203 (437)
T ss_dssp CCCHHHHHHHTTCHHHHHHHGGGTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 1122334455666666655555443
No 275
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=69.68 E-value=1.4e+02 Score=33.03 Aligned_cols=44 Identities=14% Similarity=-0.001 Sum_probs=25.3
Q ss_pred CChhHHHHhhccCCCCCchhHHHHH-HHHHhcCChhHHHHHHHHH
Q 041741 68 DDLEFAYKLFDEMPERNVVSWNNLI-SALVRNGLEEKALSVYNKM 111 (748)
Q Consensus 68 ~~~~~a~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~m 111 (748)
+.+.....+++...-++...-..++ .+|...|++++++++--..
T Consensus 52 ~~i~~ie~l~ed~~f~~r~laalvaSkvyy~Lg~~~~al~yaL~a 96 (963)
T 4ady_A 52 NELPDIEALYDDDTFSDREMAALIASKVYYNLGEYESAVKYALAA 96 (963)
T ss_dssp TTHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCCCcchHHHHHHHHHHHheeccchHHHHHHHHhC
Confidence 4445555566554445433333333 3677789998888766554
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=68.54 E-value=26 Score=29.01 Aligned_cols=79 Identities=8% Similarity=-0.075 Sum_probs=46.5
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHh
Q 041741 637 GVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLA 715 (748)
Q Consensus 637 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 715 (748)
..+-|.......+..--..++..+....+..-. ...-...|...+..+-..|++.+|.++++..++... .+...|-
T Consensus 58 ~YknD~RyLklWl~ya~~~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A---~P~~~L~ 134 (164)
T 2wvi_A 58 RYYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA---EPLERLQ 134 (164)
T ss_dssp GGTTCHHHHHHHHHHHHHCSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---BSHHHHH
T ss_pred hhccCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHH
Confidence 344554444433333223355444444433333 445677788888888888899999999988888553 4445554
Q ss_pred HHH
Q 041741 716 NIY 718 (748)
Q Consensus 716 ~~~ 718 (748)
..+
T Consensus 135 ~~~ 137 (164)
T 2wvi_A 135 SQH 137 (164)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.47 E-value=29 Score=28.33 Aligned_cols=34 Identities=3% Similarity=-0.013 Sum_probs=23.5
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041741 671 KDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLD 704 (748)
Q Consensus 671 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 704 (748)
..-...|......+-..|++++|.++++..++.+
T Consensus 98 ~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 98 TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3456666777777777777777777777777653
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.36 E-value=28 Score=31.91 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=28.4
Q ss_pred HHHHHHHhcCChhhHHHHHhcCCCCCee----hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 041741 160 ALLSLYAKCGWTKHAVPVFEEMSEPNEV----TFTAMMSGLAKTDRVVEALEMFRLMIRKAVSID 220 (748)
Q Consensus 160 ~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 220 (748)
..+...++.|+.+.+..+++.-..++.. .+ +.+...+..|+.+ +++.+.+.|..|+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPV 66 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 3445556677777777777664433221 12 2333334455543 4444555555443
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.70 E-value=17 Score=36.30 Aligned_cols=95 Identities=8% Similarity=-0.101 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH---cCCCCCHHH--HH
Q 041741 542 VGSALIEMYCKCGDIYGARQFFDMMHG------KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIA---SGVKPDDIT--FV 610 (748)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~--~~ 610 (748)
....+...|.+.|+++.|.+.+.++.. .-...+-..++.+...+++..+...++++.. .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456788889999999999999988763 2345677788888899999999988888754 333333322 12
Q ss_pred HHHHHhcCCCChHHHHHHHHHhhhhh
Q 041741 611 AILTACSHSGLVDVGVEIFNSMQLDH 636 (748)
Q Consensus 611 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 636 (748)
.-+..+...+++..|...|-.....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 22334567788999999888885443
No 280
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=63.54 E-value=90 Score=28.54 Aligned_cols=21 Identities=5% Similarity=-0.110 Sum_probs=10.2
Q ss_pred CchHHHHHHHHHHHhcCChhH
Q 041741 270 ADLHLSNSLLDMYAKNGDMDS 290 (748)
Q Consensus 270 ~~~~~~~~li~~~~~~~~~~~ 290 (748)
++..+-...+.++.+.|+...
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~~ 224 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKRV 224 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGGG
T ss_pred CCHHHHHHHHHHHHHhCCHhh
Confidence 344444455555555554433
No 281
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=61.40 E-value=77 Score=27.08 Aligned_cols=18 Identities=6% Similarity=0.014 Sum_probs=7.0
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 041741 568 GKNTVTWNEMIHGYAQNG 585 (748)
Q Consensus 568 ~~~~~~~~~l~~~~~~~~ 585 (748)
.++...-...+.++...+
T Consensus 118 d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp CSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 334333333344444433
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=59.06 E-value=32 Score=30.50 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=8.7
Q ss_pred HHHHHHccCCchhhhhhhhc
Q 041741 29 LIELYSKCNNTHSAQHLFDK 48 (748)
Q Consensus 29 l~~~~~~~~~~~~A~~~~~~ 48 (748)
.+...++.|+.+.+..+++.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHc
Confidence 33444444444444444443
No 283
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=58.30 E-value=91 Score=26.89 Aligned_cols=17 Identities=6% Similarity=0.013 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHHHHHcC
Q 041741 569 KNTVTWNEMIHGYAQNG 585 (748)
Q Consensus 569 ~~~~~~~~l~~~~~~~~ 585 (748)
++...-...+.++...+
T Consensus 124 ~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIG 140 (211)
T ss_dssp SSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 33333333333333333
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.85 E-value=38 Score=29.70 Aligned_cols=69 Identities=6% Similarity=-0.019 Sum_probs=42.8
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041741 637 GVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDP 705 (748)
Q Consensus 637 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 705 (748)
.++-|.......+..---..+..+....+..-. ...-...|......+-..|++.+|.++|+..++..-
T Consensus 112 rYknD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 112 LYKDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp GGTTCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred cccCCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 344554433333332222344444444433333 445678888888889999999999999999998643
No 285
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=54.36 E-value=1.4e+02 Score=28.03 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=44.2
Q ss_pred HhHHHHHHHHHCCCCcHhH--HHHHHHHHHhcCChhhHHHHHhcCC-C---CCeehHHHHHHHHHcCCCHHHHHHHHHHH
Q 041741 139 GRRCHGLVIKIGLDKNIYV--ANALLSLYAKCGWTKHAVPVFEEMS-E---PNEVTFTAMMSGLAKTDRVVEALEMFRLM 212 (748)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 212 (748)
...+.+.+.+.|..++... -.+.+...+..|..+.+..+++.-. . .|..-++.|.. .+..|+.+ +.+.+
T Consensus 218 ~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~-A~~~g~~~----iv~~L 292 (337)
T 4g8k_A 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL-AVELKLKK----IAELL 292 (337)
T ss_dssp HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHH-HHHTTCHH----HHHHH
T ss_pred HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHH-HHHcCCHH----HHHHH
Confidence 3445556677776554321 1223445667788888877776422 2 22222333333 34556643 55566
Q ss_pred HHcCCCCCccc
Q 041741 213 IRKAVSIDSVS 223 (748)
Q Consensus 213 ~~~g~~~~~~t 223 (748)
++.|..++..+
T Consensus 293 l~~GAd~n~~~ 303 (337)
T 4g8k_A 293 CKRGASTDCGD 303 (337)
T ss_dssp HTTSCSSTTCC
T ss_pred HHCCCCCCCCC
Confidence 77888887766
No 286
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=52.53 E-value=1e+02 Score=27.11 Aligned_cols=195 Identities=11% Similarity=0.030 Sum_probs=84.7
Q ss_pred HHHHHHHhCCCCCcch--hhHHHHHHHccCCchhhhhhhhcCCCC---chhhhhHHHHHhhcCCChhHHHHhhccCC-C-
Q 041741 10 LHAHILRNGLFDDTFL--CNRLIELYSKCNNTHSAQHLFDKMPHK---DIYSWNAILSAQCKSDDLEFAYKLFDEMP-E- 82 (748)
Q Consensus 10 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~- 82 (748)
+...+++.|..++... -.+.+...+..|+.+.+..+++.-..+ +.... ..+...+..|+.+-+..+++.-+ .
T Consensus 26 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~~~~~~ 104 (237)
T 3b7b_A 26 ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS-TCLHLAAKKGHYEVVQYLLSNGQMDV 104 (237)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSC-CHHHHHHHTTCHHHHHHHHTTTCCCT
T ss_pred HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCc
Confidence 4555666666665432 234555555667776666666654332 22222 23334445566666666665431 1
Q ss_pred --CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcch--HHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhH-
Q 041741 83 --RNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHIT--LASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYV- 157 (748)
Q Consensus 83 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 157 (748)
++..-++. +...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+ +.+.+.+.|..++...
T Consensus 105 ~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~ 175 (237)
T 3b7b_A 105 NCQDDGGWTP-MIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHAVNI 175 (237)
T ss_dssp TCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTCCCT
T ss_pred ccCCCCCCCH-HHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCCcCC
Confidence 11111222 22233444433 3444444554443221 111222333334433 3334444454433210
Q ss_pred -HHHHHHHHHhcCChhhHHHHHhcCCCCCeeh--HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041741 158 -ANALLSLYAKCGWTKHAVPVFEEMSEPNEVT--FTAMMSGLAKTDRVVEALEMFRLMIR 214 (748)
Q Consensus 158 -~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~ 214 (748)
-.+.+...+..|+.+-+.-+++.-..++... -.+.+...+..|+...++++.+.+.+
T Consensus 176 ~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1122334445566665555555433322110 01222333455666666666666554
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.29 E-value=62 Score=28.62 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=14.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC
Q 041741 93 SALVRNGLEEKALSVYNKMSNEGFVPT 119 (748)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~m~~~~~~p~ 119 (748)
...+..|+.+-...+++.+.+.|..++
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 334455666555555555555554443
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.71 E-value=1.4e+02 Score=27.25 Aligned_cols=45 Identities=16% Similarity=0.058 Sum_probs=17.8
Q ss_pred HHhcCChhHHHHHhccCCCC-CcccHHHHHHHHHhcCChhHHHHHH
Q 041741 282 YAKNGDMDSAEVIFSNLPER-SVVSWNVMIAGYGQKYQSTKAIELL 326 (748)
Q Consensus 282 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 326 (748)
.+..|+.+-+.-+++.-... +...-.+.+...+..|+.+-+.-++
T Consensus 136 A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 136 AVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp HHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 33445555444444433222 1112233333344455544443333
No 289
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.51 E-value=71 Score=28.10 Aligned_cols=14 Identities=7% Similarity=-0.218 Sum_probs=5.6
Q ss_pred HhcCChhhHHHHHh
Q 041741 166 AKCGWTKHAVPVFE 179 (748)
Q Consensus 166 ~~~g~~~~a~~~~~ 179 (748)
+..|+.+-+.-+++
T Consensus 50 ~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 50 AINNRIDLVKYYIS 63 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 33444444433333
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.58 E-value=56 Score=33.10 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHh
Q 041741 608 TFVAILTACSHSGLVDVGVEIFNSM 632 (748)
Q Consensus 608 ~~~~l~~~~~~~~~~~~A~~~~~~~ 632 (748)
.++.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 4555566666666666666665554
No 291
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=46.13 E-value=43 Score=34.01 Aligned_cols=56 Identities=23% Similarity=0.112 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHH
Q 041741 679 VLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELM 734 (748)
Q Consensus 679 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (748)
.++...+-....+.|...|.++..+.|++..++..||.++...|+.-+|.=+|-+.
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 34444555566778888888888888888888888888888888887777655543
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=45.20 E-value=1.3e+02 Score=25.90 Aligned_cols=55 Identities=9% Similarity=-0.095 Sum_probs=34.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHhccccCcHHHhHHHHHHHHHCCCC
Q 041741 99 GLEEKALSVYNKMSNEGFVPTHI-TLASVFKASTALLDVEHGRRCHGLVIKIGLDK 153 (748)
Q Consensus 99 ~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (748)
++..++.++|..|..+|+-.... .|......+...|++.+|..++..-++.+-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33567888888888877765444 33444444555666666666666666666555
No 293
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=43.82 E-value=1.5e+02 Score=25.23 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=26.5
Q ss_pred hhHHHHHhccCCCCCcc--------cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041741 288 MDSAEVIFSNLPERSVV--------SWNVMIAGYGQKYQSTKAIELLQRMKS 331 (748)
Q Consensus 288 ~~~a~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~m~~ 331 (748)
++.|+.+|+.+.+.-.. .-...+..|.++|.+++|.++|++...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 45677777776642111 122334567788888888888887544
No 294
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=43.50 E-value=1.5e+02 Score=31.37 Aligned_cols=228 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHh---
Q 041741 476 MIAGLSLNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCK--- 552 (748)
Q Consensus 476 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 552 (748)
....+.-.|+++.|++.+-.. ...+.+.+...+..+.-.+- -+.+......-...-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhh
Q ss_pred cCCHHHHHHHhhhcCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHH
Q 041741 553 CGDIYGARQFFDMMHGKN-----TVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVE 627 (748)
Q Consensus 553 ~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 627 (748)
.++..+|.++|--+..++ ......+-......++ |..+... +.+|...-..++.-+...=+++.-.+
T Consensus 369 ~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~-------f~~LLG~-i~~dG~r~~G~i~~~~~li~l~d~~~ 440 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKE-------FTVLLGK-IGRDGARIPGVIEERQPLLHVRDEKE 440 (661)
T ss_dssp TTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCC-------HHHHHCE-ECTTSCEECCHHHHTCGGGTCSCHHH
T ss_pred cCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhccc-------HHHHcCC-cCCCCCcCcchHHHhhcccccccHHH
Q ss_pred HHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCC----------------H
Q 041741 628 IFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP-CKDDPVIWEVLLSSCRLHAN----------------V 690 (748)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~----------------~ 690 (748)
..+.+ ....+..+...|++++|..+|.-.. ...-....+.++.-....-+ .
T Consensus 441 ~~~~i------------~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~ 508 (661)
T 2qx5_A 441 FLHTI------------TEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPV 508 (661)
T ss_dssp HHHHH------------HHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHH
T ss_pred HHHHH------------HHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHH
Q ss_pred HHHHHHHHH-------HHhcCCCCCcchHHHhHH-----HhhcCChHHHHHHHHHH
Q 041741 691 RLAKRAAEE-------LFRLDPKNSAPYSLLANI-----YSSLGRWDDLRAVRELM 734 (748)
Q Consensus 691 ~~a~~~~~~-------~~~~~p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~ 734 (748)
..|.+..+. ..+..+.+-.++..|..+ ++..|+|++|++.++++
T Consensus 509 ~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 509 LLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 295
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=42.45 E-value=1.5e+02 Score=25.81 Aligned_cols=53 Identities=9% Similarity=-0.010 Sum_probs=23.4
Q ss_pred HHHhcCChhHHHHHhccCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 041741 281 MYAKNGDMDSAEVIFSNLPERSV---VSWNVMIAGYGQKYQSTKAIELLQRMKSCGF 334 (748)
Q Consensus 281 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 334 (748)
..+..|+.+-+..+++.-...+. .-. +.+...+..|+.+-+..+++.+.+.|.
T Consensus 127 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 127 FAACVGSEEIVRLLIEHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 33444555555555443222211 111 223333445555555555555555554
No 296
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.36 E-value=2.4e+02 Score=27.04 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCCC---HHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCHHH
Q 041741 543 GSALIEMYCKCGDIYGARQFFDMMHGKN---TVTWNEMIHGYAQNGY--GDEAVRLYKDMIASGVKPDDIT 608 (748)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 608 (748)
...++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+....++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3567888889999999999999998763 2223334444444333 3457788888888776554433
No 297
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=41.89 E-value=2.6e+02 Score=27.28 Aligned_cols=215 Identities=8% Similarity=-0.006 Sum_probs=91.4
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHhCCCC-----chHHHHHHHHHHHhcCCHHHHHHHhhhcCC------CCHHHHH----
Q 041741 511 VLSSCAKLSSSFQGRQVHAQIEKDGYVN-----DIFVGSALIEMYCKCGDIYGARQFFDMMHG------KNTVTWN---- 575 (748)
Q Consensus 511 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~---- 575 (748)
+...+...|++.+|..++..+.+.=-.. -..++-.-++.|...+++.++...+..... +++....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 4445555555555555555554431011 122334445555666666666655544321 2222111
Q ss_pred HHHHHHH-HcCChhHHHHHHHHHHHcC---CCCCH---HHHHHHHHHhcCCCChHHHHHHHH-HhhhhhCCCCChhHHHH
Q 041741 576 EMIHGYA-QNGYGDEAVRLYKDMIASG---VKPDD---ITFVAILTACSHSGLVDVGVEIFN-SMQLDHGVEPILDHYTC 647 (748)
Q Consensus 576 ~l~~~~~-~~~~~~~a~~~~~~m~~~~---~~p~~---~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~~ 647 (748)
.-+..+. ..++|..|...|-+..+.- ..|.. ..|..+. +... ++..+-..++. .....+ ..|....+..
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl~-~~r~el~~~l~~~~~~~~-~~pei~~l~~ 261 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIML-GQSDDVNQLVSGKLAITY-SGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHT-TCGGGHHHHHHSHHHHTT-CSHHHHHHHH
T ss_pred HhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHc-CCHHHHHHHhcccccccc-CCccHHHHHH
Confidence 1123344 5666776666665543210 01111 1232222 2222 22222222221 110111 2344444555
Q ss_pred HHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHHHhhcCChH
Q 041741 648 MIDCLGRAGHFHEAEMLIDEMP--CKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANIYSSLGRWD 725 (748)
Q Consensus 648 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 725 (748)
++.++ ..+++.+...+++... ...|+.....+-..+... -...+.+.. .|=....+..++....- ..+
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I-----r~~~L~~i~--~pYsrIsl~~iA~~l~l--s~~ 331 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTM-----LEQNLCRII--EPYSRVQVAHVAESIQL--PMP 331 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH-----HHHHHHHHH--TTCSEEEHHHHHHHHTC--CHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH-----HHHHHHHHh--HhhceeeHHHHHHHHCc--CHH
Confidence 55554 4567777777766653 334544321111111110 012222222 45444555555555433 566
Q ss_pred HHHHHHHHHHhcC
Q 041741 726 DLRAVRELMSENC 738 (748)
Q Consensus 726 ~A~~~~~~~~~~~ 738 (748)
+++..+-+|...|
T Consensus 332 evE~~L~~lI~dg 344 (394)
T 3txn_A 332 QVEKKLSQMILDK 344 (394)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 7777777776543
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.98 E-value=64 Score=32.69 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCC----H--hHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcch
Q 041741 642 LDHYTCMIDCLGRAGHFHEAEMLIDEMPCKDD----P--VIWE-VLLSSCRLHANVRLAKRAAEELFRLDPKNSAPY 711 (748)
Q Consensus 642 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~--~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 711 (748)
...++.+++.|...+.++.|..++.+..++.. . ..|. .++......+++.+|.+.+..+++.-|.+....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~ 307 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSL 307 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhh
Confidence 44577888889999999999999998864422 1 1222 234456678899999999999999888665544
No 299
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=37.51 E-value=3.5e+02 Score=27.57 Aligned_cols=68 Identities=7% Similarity=-0.048 Sum_probs=41.9
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHH----H-HHHHhcCCCCCcchHHHhHHHhhcCChHHHHHHHHHHHhc
Q 041741 670 CKDDPVIWEVLLSSCRLHANVRLAKRA----A-EELFRLDPKNSAPYSLLANIYSSLGRWDDLRAVRELMSEN 737 (748)
Q Consensus 670 ~~~~~~~~~~l~~~~~~~~~~~~a~~~----~-~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (748)
..+|......+-.-+...|..++-.++ + .-+.+..|++......|-+-|.+.|++-+|.+++-.+-..
T Consensus 174 ~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 174 KYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp SSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 456676666666666666654442211 1 1112245666677778888888889999999988877654
No 300
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.50 E-value=1.4e+02 Score=25.93 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=27.4
Q ss_pred HHHHHhcCChhhHHHHHhcCCC----CCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 041741 162 LSLYAKCGWTKHAVPVFEEMSE----PNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSID 220 (748)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 220 (748)
+...+..|+.+....+++.-.. ++...++.+.. .+..|+.+ +++.+.+.|..++
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~----~v~~Ll~~g~~~~ 67 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACSAGHTE----IVEFLLQLGVPVN 67 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCSC
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHHcCcHH----HHHHHHHhCCCCC
Confidence 4455667888887777765321 23333333332 33445543 4444555565444
No 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.01 E-value=2.4e+02 Score=25.65 Aligned_cols=48 Identities=6% Similarity=-0.040 Sum_probs=21.7
Q ss_pred HHHHHhcCChhhHHHHHhcCCCC-CeehHHHHHHHHHcCCCHHHHHHHH
Q 041741 162 LSLYAKCGWTKHAVPVFEEMSEP-NEVTFTAMMSGLAKTDRVVEALEMF 209 (748)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~ 209 (748)
+...+..|+.+-+.-+++.-... +...-.+.+...+..|+.+-+.-++
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 34444556666555555544332 2212233334444556655444333
No 302
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=36.79 E-value=1e+02 Score=26.66 Aligned_cols=205 Identities=12% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCcc---hhhHHHHHHHccCCchhhhhhhhcCCCCchhhhh--HHHHHhhcCCChhHHHHhhccCCC-
Q 041741 9 LLHAHILRNGLFDDTF---LCNRLIELYSKCNNTHSAQHLFDKMPHKDIYSWN--AILSAQCKSDDLEFAYKLFDEMPE- 82 (748)
Q Consensus 9 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~- 82 (748)
.+...+++.|..++.. .-.+.+...++.|+.+....+++.-..++..... ..+...+..|+.+-+..+++.-..
T Consensus 5 ~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~ 84 (223)
T 2f8y_A 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84 (223)
T ss_dssp CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC
T ss_pred HHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q ss_pred ---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcchHH--HHHHHhccccCcHHHhHHHHHHHHHCCCCcHhH
Q 041741 83 ---RNVVSWNNLISALVRNGLEEKALSVYNKMSNEGFVPTHITLA--SVFKASTALLDVEHGRRCHGLVIKIGLDKNIYV 157 (748)
Q Consensus 83 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 157 (748)
++..-++.+..+..... .++++.+.+.|..++..... +.+...+..|+.+-++.+++. ...+......
T Consensus 85 ~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~ 157 (223)
T 2f8y_A 85 LDARMHDGTTPLILAARLAV-----EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNR 157 (223)
T ss_dssp TTCCCTTCCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTT
T ss_pred cccCCCCCCcHHHHHHHhCc-----HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCC
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCCCCCeehHH--HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccH
Q 041741 158 ANALLSLYAKCGWTKHAVPVFEEMSEPNEVTFT--AMMSGLAKTDRVVEALEMFRLMIRKAVSIDSVSL 224 (748)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~t~ 224 (748)
-.+.+...+..|+.+-+.-+++.-..++..... +.+......|+.+ +++.+.+.|..++...+
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~----i~~~L~~~g~~~~~~~~ 222 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD----IVRLLDEYNLVRSPQLH 222 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCSSCC---
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchH----HHHHHHHcCCCcccccC
No 303
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=36.69 E-value=1.8e+02 Score=24.11 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=56.7
Q ss_pred HHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-------------CCCc-chH
Q 041741 651 CLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEELFRL----DP-------------KNSA-PYS 712 (748)
Q Consensus 651 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p-------------~~~~-~~~ 712 (748)
.+.-.|.+..++-++.... ..+..-+..+. +....|+..|...++..++- +| .|.. .+.
T Consensus 42 ~LyyngEY~R~Lf~L~~lN-T~Ts~YYk~LC--y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~ 118 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHKLN-TCTSKYYESLC--YKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES 118 (242)
T ss_dssp HHHHTTCHHHHHHHHHTCC-BHHHHHHHHHH--HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH
T ss_pred hhhhcchHhHHHHHHHhcc-hHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH
Confidence 4455788888888887765 33333344333 45677899999999998842 22 2222 378
Q ss_pred HHhHHHhhcCChHHHHHHHHH
Q 041741 713 LLANIYSSLGRWDDLRAVREL 733 (748)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~ 733 (748)
.++.++-..|+.+||..++..
T Consensus 119 l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhhhHhhh
Confidence 899999999999999999874
No 304
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.73 E-value=2.2e+02 Score=24.78 Aligned_cols=15 Identities=0% Similarity=0.126 Sum_probs=7.1
Q ss_pred HhcCChhHHHHHhcc
Q 041741 283 AKNGDMDSAEVIFSN 297 (748)
Q Consensus 283 ~~~~~~~~a~~~~~~ 297 (748)
+..|+.+-...+++.
T Consensus 87 ~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 87 CEHRSPTCLRALLDS 101 (241)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc
Confidence 344555544444443
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.50 E-value=89 Score=29.21 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCC
Q 041741 275 SNSLLDMYAKNGDMDSAEVIFSNLPERSV---VSWNVMIAGYGQKYQ--STKAIELLQRMKSCGFEPD 337 (748)
Q Consensus 275 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 337 (748)
.+.++.-|...|+.++|...++++..|.. .....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 34678888889999999999999876622 123333344444322 4556677777777665443
No 306
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.23 E-value=1.2e+02 Score=21.23 Aligned_cols=62 Identities=10% Similarity=0.118 Sum_probs=39.8
Q ss_pred HHHHhCCCCCCcchHHHHHHHhcccc-CcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCCh
Q 041741 109 NKMSNEGFVPTHITLASVFKASTALL-DVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWT 171 (748)
Q Consensus 109 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 171 (748)
+.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|-.
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34556676665544 34555555554 5566778888887776666666666677777776654
No 307
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=34.07 E-value=1.2e+02 Score=26.56 Aligned_cols=16 Identities=19% Similarity=0.088 Sum_probs=8.3
Q ss_pred HHhcCChhhHHHHHhc
Q 041741 165 YAKCGWTKHAVPVFEE 180 (748)
Q Consensus 165 ~~~~g~~~~a~~~~~~ 180 (748)
.+..|+.+-+..+++.
T Consensus 84 A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3445555555555544
No 308
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=33.86 E-value=4.3e+02 Score=27.63 Aligned_cols=390 Identities=10% Similarity=0.008 Sum_probs=199.6
Q ss_pred HHhcCChhHHHHHhccCCCCCcccH---HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHHHH
Q 041741 282 YAKNGDMDSAEVIFSNLPERSVVSW---NVMIAGYGQKYQSTKAIELLQRMKSCGFEPDE-VTSINMLVACVRSGDIKTG 357 (748)
Q Consensus 282 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a 357 (748)
..+.|+++.+..+...+..-....| ..+...+ .....+++...+++ ..-.|-. ..-..-+..+.+.+++...
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~---~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRA---NPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHH---CCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 3456888888888777644222222 2221111 12234444444433 3222322 2224445667788899998
Q ss_pred HHHhccCCCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHH--HHHHHHHhhc-
Q 041741 358 REMFDSMPSPSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGK--QVHAASLKTA- 434 (748)
Q Consensus 358 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~- 434 (748)
...+.. ...+...-.....+....|+...|......+=..| ...+.....++..+...|.+.... .=+..+...+
T Consensus 92 l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~ 169 (618)
T 1qsa_A 92 LAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGN 169 (618)
T ss_dssp HHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred HHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Confidence 887776 33444444556677788898877777766665444 233445555666655544433221 1111111111
Q ss_pred ----------CCchh-HHHHHHHHHHHhcCChHHHHHHHhhCCCCCcch---HHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 041741 435 ----------SHIDN-YVASGLIGIYSKCQRNELAERVFHRIPELDIVC---WNSMIAGLSLNSLDIEAFMFFKQMRQNE 500 (748)
Q Consensus 435 ----------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~ 500 (748)
+.++. .....++.++..- ..+....... .++... +..-+.-+. ..+.+.|...+....+..
T Consensus 170 ~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~ 244 (618)
T 1qsa_A 170 TGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVA-RQDAENARLMIPSLAQAQ 244 (618)
T ss_dssp HHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHH-hcCHHHHHHHHHhhhhcc
Confidence 11111 1122222222221 2222222221 111111 111122222 337789999998886543
Q ss_pred -CCCCHH--HHHHHHHhhcCCCCchhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHHHH
Q 041741 501 -MYPTQF--SFATVLSSCAKLSSSFQGRQVHAQIEKDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHGK---NTVTW 574 (748)
Q Consensus 501 -~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 574 (748)
..+... ....+.......+...++...+....... .+.....-.+....+.|+++.|...|..+... .....
T Consensus 245 ~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~ 322 (618)
T 1qsa_A 245 QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 322 (618)
T ss_dssp TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHH
Confidence 222221 23344445566664556666666644332 33333444555566789999999999999763 23333
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCC-hh-----HHHHH
Q 041741 575 NEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPI-LD-----HYTCM 648 (748)
Q Consensus 575 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~-----~~~~l 648 (748)
-=+..++...|+.++|..+|+++... .+ .|..+.. .+.|.... . .. ....+. .. ....-
T Consensus 323 YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lAa--~~Lg~~~~-~----~~---~~~~~~~~~~~~~~~~~~r 387 (618)
T 1qsa_A 323 YWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGEEYE-L----KI---DKAPQNVDSALTQGPEMAR 387 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTCCCC-C----CC---CCCCSCCCCHHHHSHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHHH--HHcCCCCC-C----CC---CCCChhHHhhhccChHHHH
Confidence 44567788899999999999998752 22 2332221 11221000 0 00 001110 00 11233
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 041741 649 IDCLGRAGHFHEAEMLIDEMPCKDDPVIWEVLLSSCRLHANVRLAKRAAEE 699 (748)
Q Consensus 649 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 699 (748)
+..+...|....|...+..+....++.....+.......|....+.....+
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 556778888888887776664334444444555556677787777765544
No 309
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.65 E-value=2.1e+02 Score=23.97 Aligned_cols=58 Identities=10% Similarity=0.252 Sum_probs=26.9
Q ss_pred HHHhcCChhHHHHHhccC-CC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh
Q 041741 281 MYAKNGDMDSAEVIFSNL-PE---RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDE 338 (748)
Q Consensus 281 ~~~~~~~~~~a~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 338 (748)
..+..|+.+-+..+++.- .. ++..-.+.+..+.........-.++++.+.+.|..++.
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 344556666555555543 11 22223333333333322233345566666666665543
No 310
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=32.07 E-value=2.2e+02 Score=23.66 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=48.9
Q ss_pred hcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC----------------H-HHHHHHHH
Q 041741 552 KCGDIYGARQFFDMMHGKNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPD----------------D-ITFVAILT 614 (748)
Q Consensus 552 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----------------~-~~~~~l~~ 614 (748)
-.|.+..++-++.........-|.. -+|-+.+++..|+..++.+++..+..| . ..++.+..
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 3577777777766544333333333 356677888888888888885444322 1 24555666
Q ss_pred HhcCCCChHHHHHHHHH
Q 041741 615 ACSHSGLVDVGVEIFNS 631 (748)
Q Consensus 615 ~~~~~~~~~~A~~~~~~ 631 (748)
.|...|+.++|+..+..
T Consensus 123 lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhh
Confidence 66777777777777653
No 311
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.70 E-value=1.8e+02 Score=24.50 Aligned_cols=162 Identities=13% Similarity=0.080 Sum_probs=85.2
Q ss_pred HHHHHHhCC-CCCcc--hhhHHHHHHHccCCchhhhhhhhcCCCCc---hhhhhHHHHHhhcCCChhHHHHhhccCC-C-
Q 041741 11 HAHILRNGL-FDDTF--LCNRLIELYSKCNNTHSAQHLFDKMPHKD---IYSWNAILSAQCKSDDLEFAYKLFDEMP-E- 82 (748)
Q Consensus 11 ~~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~- 82 (748)
...++..+. .++.. .-.+.+...++.|+.+-+..+++.-..++ ...++. +...+..|+.+-+..+++.-. .
T Consensus 21 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~~~~~~ 99 (201)
T 3hra_A 21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSP-YLYAGAQGRTEILAYMLKHATPDL 99 (201)
T ss_dssp HHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHSCCCT
T ss_pred HHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhccCccc
Confidence 344444443 44433 22456677778889888888888765533 223333 444556688888888875432 2
Q ss_pred --CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC---CcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHh
Q 041741 83 --RNVVSWNNLISALVRNGLEEKALSVYNKMSNEG-FVP---THITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIY 156 (748)
Q Consensus 83 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 156 (748)
.+..-.+ .+...+..|+.+-+. .+.+.| ..+ +..-.+.+..++........-.++.+.+.+.|..++..
T Consensus 100 ~~~~~~g~t-~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~ 174 (201)
T 3hra_A 100 NKHNRYGGN-ALIPAAEKGHIDNVK----LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK 174 (201)
T ss_dssp TCCCTTSCC-SHHHHHHTTCHHHHH----HHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred ccccCCCCc-HHHHHHHcCCHHHHH----HHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc
Confidence 2221122 233344566654433 333434 222 23333444444433333444567777888888766543
Q ss_pred HH--HHHHHHHHhcCChhhHHHHH
Q 041741 157 VA--NALLSLYAKCGWTKHAVPVF 178 (748)
Q Consensus 157 ~~--~~li~~~~~~g~~~~a~~~~ 178 (748)
.. .+.+...+..|+.+-+.-++
T Consensus 175 ~~~g~t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 175 DNSGRTAMDYANQKGYTEISKILA 198 (201)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHhHHHHHH
Confidence 21 12344455667766655544
No 312
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.99 E-value=2.2e+02 Score=24.66 Aligned_cols=180 Identities=14% Similarity=0.095 Sum_probs=91.3
Q ss_pred hHHHHHHHccCCchhhhhhhhcCCC----CchhhhhHHHHHhhcCCChhHHHHhhccCCCC---CchhHHHHHHHHHhcC
Q 041741 27 NRLIELYSKCNNTHSAQHLFDKMPH----KDIYSWNAILSAQCKSDDLEFAYKLFDEMPER---NVVSWNNLISALVRNG 99 (748)
Q Consensus 27 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~ 99 (748)
++.+...++.|+.+....+++.-+. ++...++. +...+..|+.+-+..+++.-..+ +..-++.+ ...+..|
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~ 84 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL-HIAASAG 84 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHHT
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHH-HHHHHcC
Confidence 3557777788888888888776543 33333333 34445667877777777653332 22222233 3334455
Q ss_pred ChhHHHHHHHHHHhCCCCCCcch--HHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhH--HHHHHHHHHhcCChhhHH
Q 041741 100 LEEKALSVYNKMSNEGFVPTHIT--LASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYV--ANALLSLYAKCGWTKHAV 175 (748)
Q Consensus 100 ~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~ 175 (748)
+.+ +++.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -...+...+..|+.+-+.
T Consensus 85 ~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 85 XDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA----VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156 (231)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 543 4455555665554321 11233334445555543 44445555443211 122344455677877777
Q ss_pred HHHhcCCCCC---eehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc
Q 041741 176 PVFEEMSEPN---EVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDS 221 (748)
Q Consensus 176 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 221 (748)
-+++.-..++ ..-.+. +...+..|+. ++++.+.+.|..++.
T Consensus 157 ~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~ga~~~~ 200 (231)
T 3aji_A 157 ILLFYKASTNIQDTEGNTP-LHLACDEERV----EEAKFLVTQGASIYI 200 (231)
T ss_dssp HHHHTTCCSCCCCTTSCCH-HHHHHHTTCH----HHHHHHHHTTCCSCC
T ss_pred HHHhcCCCccccCCCCCCH-HHHHHHCCCH----HHHHHHHHCCCCCCC
Confidence 7776543322 222222 3333455654 345555666766543
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.99 E-value=1.8e+02 Score=25.81 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041741 189 FTAMMSGLAKTDRVVEALEMFRLMIR 214 (748)
Q Consensus 189 ~~~li~~~~~~g~~~~a~~~~~~m~~ 214 (748)
-...+..+.+.|+.++|.++|-+...
T Consensus 94 ~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 94 LKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 34455666777777888777777654
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.65 E-value=4.3e+02 Score=26.29 Aligned_cols=105 Identities=10% Similarity=0.139 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 041741 258 QVHCLTIKLGFEADLHLSNSLLDMYAKNGDMDSAEVIFSNLPE---RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGF 334 (748)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 334 (748)
-..+...+.|++-....|..-.+.+...|++++|.++-...+. ++..+.+.+-.+-...|...-.+.+|..+.+.|
T Consensus 347 lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g- 425 (494)
T 1bpo_A 347 LALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG- 425 (494)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-
Confidence 3344445556666666677677788889999999988777665 344455444444445566667777777777776
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHhcc
Q 041741 335 EPDEVTSINMLVACVRSGDIKTGREMFDS 363 (748)
Q Consensus 335 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 363 (748)
+.+..--..+.+.....|+.+-.++.+.+
T Consensus 426 ~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 426 QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 34444444555555566666665555544
No 315
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=29.54 E-value=3.5e+02 Score=25.22 Aligned_cols=147 Identities=11% Similarity=0.113 Sum_probs=71.2
Q ss_pred HHHHHhcCChhHHHHHhccC-CC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcC
Q 041741 279 LDMYAKNGDMDSAEVIFSNL-PE---RSVVSWNVMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVT--SINMLVACVRSG 352 (748)
Q Consensus 279 i~~~~~~~~~~~a~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~ 352 (748)
+...+..|+.+-+..+++.. .. .+....+.+..+... +.......+.+.+.+.|..++... -.+-+...+..|
T Consensus 172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~ 250 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 250 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhh
Confidence 33445667777776666542 12 222222333332222 222223344455567776665432 223455566778
Q ss_pred CHHHHHHHhccCC-C---CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHhhccCChHHHHHHHH
Q 041741 353 DIKTGREMFDSMP-S---PSVSSWNAMLSSYSQSENHKEAIKLFREMQFRGVKPDRTTLAIILSSCAAMGILESGKQVHA 428 (748)
Q Consensus 353 ~~~~a~~~~~~~~-~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 428 (748)
..+.+..++..-. . .|..-.+.|.. .++.|+.+ +++.+.+.|..++..+ .+...+..|+.+ +.+
T Consensus 251 ~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~-A~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~ 318 (337)
T 4g8k_A 251 HLGLVQRLLEQEHIEINDTDSDGKTALLL-AVELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHS----LVK 318 (337)
T ss_dssp CHHHHHHHHTSTTCCTTCBCTTSCBHHHH-HHHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHH
T ss_pred hhHHHHHHHHhcCCcccCcCCCCCCHHHH-HHHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHH
Confidence 8888777775422 1 22222233332 34556554 4444566777776654 233334445443 444
Q ss_pred HHHhhcCCch
Q 041741 429 ASLKTASHID 438 (748)
Q Consensus 429 ~~~~~~~~~~ 438 (748)
.+++.|-.++
T Consensus 319 ~Ll~~GA~~d 328 (337)
T 4g8k_A 319 VLLSHGAKED 328 (337)
T ss_dssp HHHHTTCCC-
T ss_pred HHHHCcCCCC
Confidence 5556665544
No 316
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.21 E-value=92 Score=27.94 Aligned_cols=79 Identities=9% Similarity=-0.061 Sum_probs=44.3
Q ss_pred cchhhhHHHHHHHHhCCCCCcchh-------hHHHHHHH--ccCCchhhhhhhhcCCC--------------CchhhhhH
Q 041741 3 AHVAGKLLHAHILRNGLFDDTFLC-------NRLIELYS--KCNNTHSAQHLFDKMPH--------------KDIYSWNA 59 (748)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~--~~~~~~~A~~~~~~~~~--------------~~~~~~~~ 59 (748)
+.+.-+.+...+...|..++...+ +.|..+.. +.|+.+-+..+++.... .|...++
T Consensus 17 ~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t- 95 (260)
T 3jxi_A 17 SPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQT- 95 (260)
T ss_dssp CGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBC-
T ss_pred CHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCC-
Confidence 445556677777778887775542 33433332 66877777777765321 1112233
Q ss_pred HHHHhhcCCChhHHHHhhccCCC
Q 041741 60 ILSAQCKSDDLEFAYKLFDEMPE 82 (748)
Q Consensus 60 l~~~~~~~~~~~~a~~~~~~~~~ 82 (748)
.+...+..|+.+-+..+++.-..
T Consensus 96 ~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 96 ALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHhCCCC
Confidence 33344455777777666665433
No 317
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.08 E-value=3.2e+02 Score=24.62 Aligned_cols=17 Identities=12% Similarity=-0.222 Sum_probs=7.8
Q ss_pred ChhHHHHHHHHHHhcCC
Q 041741 641 ILDHYTCMIDCLGRAGH 657 (748)
Q Consensus 641 ~~~~~~~l~~~~~~~g~ 657 (748)
+...-...+.++.+.|+
T Consensus 205 ~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33334444445555554
No 318
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=28.92 E-value=1.8e+02 Score=27.88 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCC
Q 041741 275 SNSLLDMYAKNGDMDSAEVIFSNLPERS 302 (748)
Q Consensus 275 ~~~li~~~~~~~~~~~a~~~~~~~~~~~ 302 (748)
...++.-|...++.++|...++.+..|.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 3456666666677777777666665443
No 319
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.80 E-value=2.1e+02 Score=22.40 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCCCH---HHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCH
Q 041741 543 GSALIEMYCKCGDIYGARQFFDMMHGKNT---VTWNEMIHGYAQNGY--GDEAVRLYKDMIASGVKPDD 606 (748)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 606 (748)
...++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 34677778888999999999998876632 223333344444332 34577778888777754444
No 320
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.74 E-value=1.8e+02 Score=25.25 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=6.9
Q ss_pred HcCCCHHHHHHHHHH
Q 041741 197 AKTDRVVEALEMFRL 211 (748)
Q Consensus 197 ~~~g~~~~a~~~~~~ 211 (748)
+..|+.+-+.-+++.
T Consensus 205 ~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 205 GVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 445555444444333
No 321
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=27.24 E-value=81 Score=20.66 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHH-hcc
Q 041741 202 VVEALEMFRLMIRKAVSIDSVSLSSVLGVC-ARE 234 (748)
Q Consensus 202 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~-~~~ 234 (748)
.++|.+.|.+|++..-.++..||..++..+ +..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 478999999999887778888999999988 554
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.25 E-value=2.7e+02 Score=31.24 Aligned_cols=115 Identities=8% Similarity=-0.045 Sum_probs=60.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcC
Q 041741 577 MIHGYAQNGYGDEAVRLYKDMIASGVKPDDITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAG 656 (748)
Q Consensus 577 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 656 (748)
++..+...|.++-+.+ +.. .++.+...--.+.++|...|++++|...|+++. .|+..+.....
T Consensus 816 l~~~L~~~~~~~~a~e----L~~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~---------- 878 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIG-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFA---------- 878 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGG-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCG----------
T ss_pred HHHHHHHhcHHHHHHH----HHh-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcccCccccc----------
Confidence 4555666666654433 222 244454433455666777777777777777662 23322210000
Q ss_pred ChHHHHHHHhhCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCC
Q 041741 657 HFHEAEMLIDEMPCK-DDPVIWEVLLSSCRLHANVRLAKRAAEELFRL-DPKNS 708 (748)
Q Consensus 657 ~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~ 708 (748)
.......++.....+ .....|..++..+-..+-++-+.+..+.+++. .++|+
T Consensus 879 ~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 879 VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp GGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred chhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 001111122222111 11235667777788888999999999999875 34343
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.58 E-value=2e+02 Score=32.17 Aligned_cols=52 Identities=15% Similarity=0.062 Sum_probs=27.9
Q ss_pred HHHHHHccCCchhhhhhhhcCCCCchhhhhHHHHHhhcCCChhHHHHhhccCC
Q 041741 29 LIELYSKCNNTHSAQHLFDKMPHKDIYSWNAILSAQCKSDDLEFAYKLFDEMP 81 (748)
Q Consensus 29 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 81 (748)
++..+...|.++-|.++..-.++....+ ..+.+.|...|++++|...|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~-yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAV-YLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHH-HHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4455555566665555555444422222 335556666666666666666543
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.24 E-value=2.6e+02 Score=26.51 Aligned_cols=55 Identities=5% Similarity=-0.154 Sum_probs=26.8
Q ss_pred HHhcCChhhHHHHHhcCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 041741 165 YAKCGWTKHAVPVFEEMSEPNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSI 219 (748)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 219 (748)
.+..|+.+-+.-+++.-...+...-.+.+...+..|+.+-+..+++.....|..|
T Consensus 60 A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 60 ACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH
Confidence 3445565555555554433322111223333455677766666666544444443
No 325
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.23 E-value=2.7e+02 Score=26.45 Aligned_cols=184 Identities=9% Similarity=0.053 Sum_probs=95.2
Q ss_pred hHHHHHHHccCCchhhhhhhhcCCCCc---hhhhhHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChhH
Q 041741 27 NRLIELYSKCNNTHSAQHLFDKMPHKD---IYSWNAILSAQCKSDDLEFAYKLFDEMPERNVVSWNNLISALVRNGLEEK 103 (748)
Q Consensus 27 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 103 (748)
.+.|...+..|+.+....+++.-..++ ...++ .+...+..|+.+-+..+++.-...+...-.+.+..-+..|+.+-
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~ 99 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDL 99 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHH
Confidence 455666677788888888887754432 22233 34445556788877777776554333222223444456677766
Q ss_pred HHHHHHHHHhCCCCCCc--------------------chHHHHHHHhcccc--CcHHHhHHHHHHHHHCCCCcHhH--HH
Q 041741 104 ALSVYNKMSNEGFVPTH--------------------ITLASVFKASTALL--DVEHGRRCHGLVIKIGLDKNIYV--AN 159 (748)
Q Consensus 104 a~~~~~~m~~~~~~p~~--------------------~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~--~~ 159 (748)
+..+++.....|..|+. .-.+. +...+..| +.+ +.+.+.+.|..++... -.
T Consensus 100 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~~----~v~~Ll~~ga~~~~~d~~g~ 174 (364)
T 3ljn_A 100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTA-LHWCVGLGPEYLE----MIKILVQLGASPTAKDKADE 174 (364)
T ss_dssp HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCH-HHHHHHSCGGGHH----HHHHHHHHTCCTTCCCTTSC
T ss_pred HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCH-HHHHHHcCCchHH----HHHHHHHcCCCCcccCCCCC
Confidence 66666554433443332 11222 33333444 444 3444445565544321 12
Q ss_pred HHHHHHHhcCChhhHHHHHhcCCC--------CCeehHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc
Q 041741 160 ALLSLYAKCGWTKHAVPVFEEMSE--------PNEVTFTAMMSGLAKTDRVVEALEMFRLMIRKAVSIDS 221 (748)
Q Consensus 160 ~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 221 (748)
..+...+..|+.+-+.-+++.... .+..-++.|. ..+..|+.+ +++.+.+.|..++.
T Consensus 175 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~gad~~~ 239 (364)
T 3ljn_A 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWED----VAMRFVEMGIDVNM 239 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHH----HHHHHHTTTCCTTC
T ss_pred CHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHH----HHHHHHHcCCCCCC
Confidence 234445567888877777765332 2222222232 334556643 45555666766554
No 326
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.78 E-value=2.4e+02 Score=25.09 Aligned_cols=20 Identities=5% Similarity=-0.115 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHhc
Q 041741 343 NMLVACVRSGDIKTGREMFD 362 (748)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~ 362 (748)
+.+...+..|+.+-+.-+++
T Consensus 142 tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 142 LPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHh
Confidence 34444556677777666666
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.59 E-value=2.3e+02 Score=22.85 Aligned_cols=67 Identities=7% Similarity=-0.036 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcC
Q 041741 102 EKALSVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCG 169 (748)
Q Consensus 102 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 169 (748)
.....+.+.+.+.|++++ ..-..++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 9 ~~~~~~~~~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 9 SILERLRMSIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 328
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=24.43 E-value=70 Score=20.99 Aligned_cols=24 Identities=17% Similarity=-0.049 Sum_probs=13.1
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCC
Q 041741 719 SSLGRWDDLRAVRELMSENCIVKD 742 (748)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~~~~~ 742 (748)
...|+.+.|...+-+|.....+++
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 444566666666665554444443
No 329
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.19 E-value=1.9e+02 Score=25.68 Aligned_cols=89 Identities=11% Similarity=0.004 Sum_probs=51.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc--CCCCCH----HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHH
Q 041741 576 EMIHGYAQNGYGDEAVRLYKDMIAS--GVKPDD----ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMI 649 (748)
Q Consensus 576 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 649 (748)
--++.+....++++|+.++++..+. +.++.. ......+..-.....-.-+..+.+.+ ...++.......+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l----~~~~~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI----LSSNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH----HTCSSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCHHHHHHHH
Confidence 3578889999999999998876652 223211 11122222222222222233333333 2245555566777
Q ss_pred HHHHhcCChHHHHHHHhhC
Q 041741 650 DCLGRAGHFHEAEMLIDEM 668 (748)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~~ 668 (748)
..+.+.|+.++|..+|-+.
T Consensus 99 ~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHH
Confidence 8888889999998887664
No 330
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.18 E-value=1.9e+02 Score=22.70 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCc---ccHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCC
Q 041741 275 SNSLLDMYAKNGDMDSAEVIFSNLPERSV---VSWNVMIAGYGQKY--QSTKAIELLQRMKSCGFEP 336 (748)
Q Consensus 275 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~p 336 (748)
.+.++.-|...|+.++|...++++..|.. .+...+..++-+.+ ..+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 35678888888999999999988875522 12333444444433 2356677777777666443
No 331
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.03 E-value=1.6e+02 Score=23.94 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCCCH---HHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCH
Q 041741 543 GSALIEMYCKCGDIYGARQFFDMMHGKNT---VTWNEMIHGYAQNGY--GDEAVRLYKDMIASGVKPDD 606 (748)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 606 (748)
...++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 35677778888999999999998876632 223333344444322 34567777777777654443
No 332
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.87 E-value=1.4e+02 Score=24.03 Aligned_cols=63 Identities=8% Similarity=0.033 Sum_probs=39.1
Q ss_pred HHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChh
Q 041741 109 NKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTK 172 (748)
Q Consensus 109 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 172 (748)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-..
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 345566666554432 334444445556677778887777766666666666677777777654
No 333
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.62 E-value=3.4e+02 Score=23.13 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=16.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcchHHHhHH
Q 041741 682 SSCRLHANVRLAKRAAEELFRLDPKNSAPYSLLANI 717 (748)
Q Consensus 682 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 717 (748)
..|...|.+++|.+++++....+|.+...-.-|..+
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 346666666666666666666555444443334333
No 334
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.44 E-value=3.5e+02 Score=23.16 Aligned_cols=47 Identities=6% Similarity=0.037 Sum_probs=33.2
Q ss_pred HHHHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhhcCCCC
Q 041741 473 WNSMIAGLS---LNSLDIEAFMFFKQMRQNEMYPTQFSFATVLSSCAKLSS 520 (748)
Q Consensus 473 ~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 520 (748)
+-.+|+++. +..+++.|+-.+-+|.+.| .|....-..++.+....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 334555554 4678899999999999998 7766666666666665553
No 335
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.35 E-value=4.1e+02 Score=24.96 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHH----hcCChhhHHHHHhc
Q 041741 106 SVYNKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKIGLDKNIYVANALLSLYA----KCGWTKHAVPVFEE 180 (748)
Q Consensus 106 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~ 180 (748)
+++..+.+.|+.|...++..++..+++.=.++.+.++++.+...|...-..+..+++..+. ...+.++..+.+..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 3445555667777767777777777766667777777777777665432223333332221 23355666666655
No 336
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.12 E-value=2.8e+02 Score=24.02 Aligned_cols=69 Identities=9% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCCh
Q 041741 587 GDEAVRLYKDMIASGVKPDD-------ITFVAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHF 658 (748)
Q Consensus 587 ~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 658 (748)
.+.|+.+|+.+.+.-..|+. ..-...+..|.+.|.+++|.+++++.. +-.++..-...-.....+.+|.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~---~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM---SKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh---cCCCCchHHHHHHHHHHhccCc
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=22.65 E-value=5.8e+02 Score=25.41 Aligned_cols=127 Identities=9% Similarity=0.018 Sum_probs=63.0
Q ss_pred HhCCCCchHHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH
Q 041741 533 KDGYVNDIFVGSALIEMYCKCGDIYGARQFFDMMHG---KNTVTWNEMIHGYAQNGYGDEAVRLYKDMIASGVKPDDITF 609 (748)
Q Consensus 533 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 609 (748)
+.|++-....|..-.+.+...|++++|.++--..++ +++.+.+.+-..=...|...-.+.+|.-+.+.| ..+..--
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ES 432 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYES 432 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHH
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHh
Confidence 345555555565666677777888888877665543 344444433333233345555666666666665 3444322
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhhhhhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 041741 610 VAILTACSHSGLVDVGVEIFNSMQLDHGVEPILDHYTCMIDCLGRAGHFHEAEMLIDEMP 669 (748)
Q Consensus 610 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 669 (748)
.-+++.-..+|+.+-....+. +..+..+.. |++.. +..+..-|+.+|.+..
T Consensus 433 lEl~r~vL~q~r~~llekWl~----e~KL~~SEe----LGDlv-k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 433 LELCRPVLQQGRKQLLEKWLK----EDKLECSEE----LGDLV-KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----HTCSCCCHH----HHHHH-HHHCSHHHHHHHHHHC
T ss_pred hHHhHHHHhccHHHHHHHHHh----cCCccccHH----hHhhh-hhcCHHHHHHHHHHcC
Confidence 233333344455443333332 224444432 22222 3335555555555543
No 338
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.21 E-value=2.9e+02 Score=22.70 Aligned_cols=70 Identities=11% Similarity=0.024 Sum_probs=47.9
Q ss_pred hHHHHHH-HHHHhCCCCCCcchHHHHHHHhccccCcHHHhHHHHHHHHH--CCCCcHhHHHHHHHHHHhcCChh
Q 041741 102 EKALSVY-NKMSNEGFVPTHITLASVFKASTALLDVEHGRRCHGLVIKI--GLDKNIYVANALLSLYAKCGWTK 172 (748)
Q Consensus 102 ~~a~~~~-~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 172 (748)
..+.+-+ +.+.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|--.-++.+...|-..
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4444444 3456678777544 355666777777788899999999888 76677766666677788877554
No 339
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.81 E-value=2.5e+02 Score=22.63 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=43.6
Q ss_pred HHHHhCCCCCCcchHHHHHHHhcccc-CcHHHhHHHHHHHHHCCCCcHhHHHHHHHHHHhcCChh
Q 041741 109 NKMSNEGFVPTHITLASVFKASTALL-DVEHGRRCHGLVIKIGLDKNIYVANALLSLYAKCGWTK 172 (748)
Q Consensus 109 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 172 (748)
+.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 446667777665543 4455555555 67788999999988877777777666777788877654
No 340
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.29 E-value=2.2e+02 Score=22.74 Aligned_cols=46 Identities=13% Similarity=0.004 Sum_probs=28.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 041741 308 VMIAGYGQKYQSTKAIELLQRMKSCGFEPDEVTSINMLVACVRSGD 353 (748)
Q Consensus 308 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 353 (748)
.++..+...+..-.|.++++.+.+.+...+..|....|..+...|-
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3444444445555677777777777666666676666666666554
Done!