BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041743
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 35.8 bits (81), Expect = 0.055, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 90 VWEANRGKPVRENAVFSLGTDGNLVLAEADGTVVWQSNTA-NKGVLGFGLFPNGNMVLHD 148
VW +N P ++ L +DGN V+ +A+G +W S++ G L +GN+V++
Sbjct: 40 VWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVVIY- 98
Query: 149 SKGNFIWQIFDY 160
G+ IW Y
Sbjct: 99 --GSDIWSTNTY 108
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 35.0 bits (79), Expect = 0.075, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 90 VWEANRGKPVRENAVFSLGTDGNLVLAEADGTVVWQSNTA-NKGVLGFGLFPNGNMVLHD 148
VW +N P ++ L +DGN V+ +A+G +W S++ G L +GN+V++
Sbjct: 40 VWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVVIYR 99
Query: 149 SKGNFIWQIFDY 160
S IW Y
Sbjct: 100 SD---IWSTNTY 108
>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 90 VWEANRGKPVRENAVFSLGTDGNLVLAEADGTVVWQSNTA-NKGVLGFGLFPNGNMVLHD 148
VW N P ++ L +DGN V+ +A+G +W S++ G L +GN+V++
Sbjct: 40 VWTTNTDIPGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIY- 98
Query: 149 SKGNFIWQIFDY 160
G+ IW Y
Sbjct: 99 --GSDIWSTNTY 108
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 90 VWEANRGKPVRENAVFSLGTDGNLVLAEADGTVVWQSNTA-NKGVLGFGLFPNGNMVLHD 148
VW +N G ++ L +DGN V+ +A+G +W S++ G L +GN+V++
Sbjct: 40 VWASNTGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIY- 98
Query: 149 SKGNFIWQIFDY 160
G+ IW Y
Sbjct: 99 --GSDIWSTGTY 108
>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 32.3 bits (72), Expect = 0.56, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 90 VWEANRGKPVRENAVFSLGTDGNLVLAEADGTVVWQSNTA-NKGVLGFGLFPNGNMVLHD 148
VW +N G ++ L +DGN V+ +A+G +W S++ G L +GN+V++
Sbjct: 40 VWASNTGILGKKGCRAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIYR 99
Query: 149 SKGNFIW 155
S IW
Sbjct: 100 SD---IW 103
Score = 32.0 bits (71), Expect = 0.74, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 105 FSLGTDGNLVLAEADGTVVWQSNTANKGVLGFG-----LFPNGNMVLHDSKGNFIW 155
F + D NLVL + T VW SNT G+LG L +GN V++D++G +W
Sbjct: 23 FIMQEDCNLVLYD-HSTSVWASNT---GILGKKGCRAVLQSDGNFVVYDAEGRSLW 74
>pdb|1BWU|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 32.3 bits (72), Expect = 0.57, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 90 VWEANRGKPVRENAVFSLGTDGNLVLAEADGTVVWQSNTA-NKGVLGFGLFPNGNMVLHD 148
VW +N G ++ L DGN V+ +A+G +W S++ G L +GN+V++
Sbjct: 40 VWASNTGILGKKGCKAVLQADGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIY- 98
Query: 149 SKGNFIW 155
G+ IW
Sbjct: 99 --GSDIW 103
>pdb|3A0C|A Chain A, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|B Chain B, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|C Chain C, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|D Chain D, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0D|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Monomannoside
pdb|3A0E|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Dimannoside
Length = 110
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 110 DGNLVLAEADGTVVWQSNTANKGVLGFG----LFPNGNMVLHDSKGNFIWQ 156
D N VL ++ G VW SNT G LG G L NGN+V++D IWQ
Sbjct: 29 DCNFVLYDS-GKPVWASNT---GGLGSGCRLTLHNNGNLVIYDQSNRVIWQ 75
>pdb|4H3O|A Chain A, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
pdb|4H3O|B Chain B, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
Length = 105
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 105 FSLGTDGNLVLAEADGTVVWQSNTANKGVLGFG--LFPNGNMVLHDSKGNFIW 155
F + D NLVL + T W SNT G G L +GN V++DS G +W
Sbjct: 23 FIMQDDCNLVLYD-HSTSTWASNTEIGGKSGCSAVLQSDGNFVVYDSSGRSLW 74
>pdb|1DLP|A Chain A, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|B Chain B, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|C Chain C, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|D Chain D, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|E Chain E, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|F Chain F, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
Length = 236
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 30/103 (29%)
Query: 105 FSLGTDGNLVLAEADGTVVWQSNTANKGVLGFGLF-PNGNMVLHDSKGNFIWQIFDYPTD 163
S+ TD NLVL + D V W +NTA KG + PNG M + ++ +W
Sbjct: 154 LSMETDCNLVLFDRDDRV-WSTNTAGKGTGCRAVLQPNGRMDVLTNQNIAVWT------- 205
Query: 164 TLLVGQSLRVGRVTKLVSRLSVKENVDGPYRFVMEP-RRLAFY 205
G S GR Y FV++P R LA Y
Sbjct: 206 ---SGNSRSAGR-----------------YVFVLQPDRNLAIY 228
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 32/98 (32%)
Query: 108 GTDGNLVLA-EADGTV------VWQSNTANKGVLGFGLFPNGNMVLHDSKGNFIWQIFDY 160
G+ GN VL + D TV +W S T+NKG + NGN +L+ ++GN D
Sbjct: 85 GSIGNYVLVLQPDRTVTIYGPGLWDSGTSNKGSVVVA--NNGNSILYSTQGN------DN 136
Query: 161 PTDTLLVGQSLRVGRVTKLVSRLSVKENVDGPYRFVME 198
TL QSL++ PYR ME
Sbjct: 137 HPQTLHATQSLQL-----------------SPYRLSME 157
>pdb|2DPF|A Chain A, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|B Chain B, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|C Chain C, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|D Chain D, Crystal Structure Of Curculin1 Homodimer
Length = 115
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 119 DGTVVWQSNTANKGV-LGFGLFPNGNMVLHDSKGNFIW 155
+G +W SNT +G L +GN+V++D N +W
Sbjct: 37 NGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVW 74
>pdb|3M7H|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7H|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7J|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
pdb|3M7J|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
Length = 276
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 110 DGNLVLAEADGTVVWQSNTANKGVLGFGLFPNGNMVLHDSKGNFIWQ 156
DGNLV +G W + T KG + +GN+V++ + +W
Sbjct: 173 DGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGAGNAVLWH 219
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 91 WEANRGKPVRENAVFSLGTDGNLVLAEADGTVVWQSNTANKGVLGFGLFPNGNMVLHDSK 150
W A AVF DGNLV+ A V+W S+T L NG++ + D K
Sbjct: 187 WNAGTQGKGAVRAVFQ--GDGNLVVYGAGNAVLWHSHTGGHASAVLRLQANGSIAILDEK 244
Query: 151 GNFIWQIFDY 160
+W F +
Sbjct: 245 P--VWARFGF 252
>pdb|2D04|B Chain B, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|D Chain D, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|F Chain F, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|H Chain H, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 114
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 119 DGTVVWQSNTANKGV-LGFGLFPNGNMVLHDSKGNFIW 155
+G +W SNT +G L +GN+V++D N +W
Sbjct: 36 NGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVW 73
>pdb|1XD6|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 88 RWVWEA-NRGKPVRENAVFSLGTDGNLVLAEADGTVVWQSNTANK-GVLGFGLFPNGNMV 145
R VW + GK N + + DGNLV+ +W SNT + G L + N+V
Sbjct: 38 RAVWASGTNGKA--SNCILKMQRDGNLVIYSGS-RAMWASNTNRQDGNYYLILQRDRNVV 94
Query: 146 LHDSKGNFIW 155
++D+ N IW
Sbjct: 95 IYDNSNNAIW 104
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 90 VWEANRGKPVRENAVFSLGTDGNLVLAEADGTVVWQSNTANK 131
+W N G R S+ TDGNLV+ +W SNT +
Sbjct: 40 IWATNTGGLSRS-CFLSMQTDGNLVVYNPSNKPIWASNTGGQ 80
>pdb|1B77|A Chain A, Building A Replisome Structure From Interacting Pieces: A
Sliding Clamp Complexed With An Interaction Peptide From
Dna Polymerase
pdb|1B77|B Chain B, Building A Replisome Structure From Interacting Pieces: A
Sliding Clamp Complexed With An Interaction Peptide From
Dna Polymerase
pdb|1B77|C Chain C, Building A Replisome Structure From Interacting Pieces: A
Sliding Clamp Complexed With An Interaction Peptide From
Dna Polymerase
pdb|1B8H|A Chain A, Sliding Clamp, Dna Polymerase
pdb|1B8H|B Chain B, Sliding Clamp, Dna Polymerase
pdb|1B8H|C Chain C, Sliding Clamp, Dna Polymerase
Length = 228
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 99 VRENAVFSLGTDGNLVLAEADGTVVWQSNTANKGVLGFGLFPN 141
V ++A S+ TDGN+ +A+ TV W + A+K + +FPN
Sbjct: 67 VSDDAEISMHTDGNIKIADTRSTVYWPA--ADKSTI---VFPN 104
>pdb|1XD5|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|B Chain B, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|C Chain C, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|D Chain D, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 88 RWVWEA-NRGKPVRENAVFSLGTDGNLVLAEADGTVVWQSNTANK-GVLGFGLFPNGNMV 145
R VW + GK V + DGNLV+ +W SNT + G L + N+V
Sbjct: 38 RAVWASGTNGKA--SGCVLKMQNDGNLVIYSGS-RAIWASNTNRQNGNYYLILQRDRNVV 94
Query: 146 LHDSKGNFIW 155
++D+ N IW
Sbjct: 95 IYDNSNNAIW 104
>pdb|3LTF|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTF|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTG|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
pdb|3LTG|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
Length = 601
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 25/220 (11%)
Query: 191 GPYRFVMEPRRLAFYYKSSNVPRPILYYTFPFSYAGLKNLTLKSSPETRHYKLTLDSSDG 250
GP ++P RL + S V Y ++ +NL+ + ET H + ++S
Sbjct: 354 GPRYIPLDPERLEVF---STVKEITGYLNIEGTHPQFRNLSYFRNLETIHGRQLMESMFA 410
Query: 251 DSFIMDRPKYNSTISFLRLGIDGNLRVFTYSQEVDFLPEEERFTLFGKISRGNDGINWGN 310
I+ Y+ + L+ G++ V +++++ ++ + I + + W N
Sbjct: 411 ALAIVKSSLYSLEMRNLKQISSGSV-VIQHNRDLCYVSN----IRWPAIQKEPEQKVWVN 465
Query: 311 ECQMPDRCGKLGLCEDEQCVACPTENGLIGWSKENCVPTQ-VNFCGT--KDFHY----YK 363
E D C K G +QC E+G G + C+ + NF GT D Y YK
Sbjct: 466 ENLRADLCEKNGTICSDQC----NEDGCWGAGTDQCLNCKNFNFNGTCIADCGYISNAYK 521
Query: 364 LESVVHYMC--TYNYFDGIGANISIEAC----GKRCSSDC 397
++ +C +G GA+ E G+ C S+C
Sbjct: 522 FDNRTCKICHPECRTCNGAGADHCQECVHVRDGQHCVSEC 561
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,185,647
Number of Sequences: 62578
Number of extensions: 646665
Number of successful extensions: 1151
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 32
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)