Query 041743
Match_columns 440
No_of_seqs 242 out of 1514
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 10:11:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 4.6E-30 1E-34 220.1 6.1 103 87-189 2-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 1.8E-25 3.9E-30 192.2 13.7 108 50-161 7-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 1.3E-24 2.8E-29 186.3 13.2 108 49-160 6-114 (114)
4 PF00954 S_locus_glycop: S-loc 99.8 5E-20 1.1E-24 156.9 11.3 102 225-340 4-108 (110)
5 cd01098 PAN_AP_plant Plant PAN 99.5 7.4E-14 1.6E-18 112.2 7.9 80 351-435 2-84 (84)
6 PF08276 PAN_2: PAN-like domai 99.5 9.5E-14 2.1E-18 107.5 5.7 61 357-420 3-66 (66)
7 cd00129 PAN_APPLE PAN/APPLE-li 99.2 1.3E-11 2.8E-16 99.0 6.1 67 359-434 9-80 (80)
8 smart00108 B_lectin Bulb-type 98.7 7.2E-08 1.6E-12 82.4 9.2 85 104-220 23-111 (114)
9 cd00028 B_lectin Bulb-type man 98.7 9.7E-08 2.1E-12 81.9 9.2 85 104-220 23-112 (116)
10 smart00473 PAN_AP divergent su 98.4 7.5E-07 1.6E-11 69.8 7.4 71 359-433 4-77 (78)
11 PF01453 B_lectin: D-mannose b 98.3 1.1E-05 2.3E-10 69.3 11.7 99 51-161 12-113 (114)
12 cd01100 APPLE_Factor_XI_like S 97.8 2.4E-05 5.3E-10 61.4 4.5 53 362-418 7-59 (73)
13 smart00223 APPLE APPLE domain. 94.8 0.041 8.9E-07 44.0 4.2 49 364-416 6-57 (79)
14 PF14295 PAN_4: PAN domain; PD 94.5 0.031 6.8E-07 39.9 2.6 32 383-414 15-51 (51)
15 PF00024 PAN_1: PAN domain Thi 94.4 0.11 2.3E-06 40.3 5.8 51 361-415 4-55 (79)
16 smart00605 CW CW domain. 88.8 1.5 3.3E-05 35.9 6.5 53 383-436 21-76 (94)
17 PF08277 PAN_3: PAN-like domai 87.3 1.4 3.1E-05 33.7 5.1 50 383-434 19-71 (71)
18 cd01099 PAN_AP_HGF Subfamily o 80.9 2.2 4.7E-05 33.9 3.7 33 383-415 24-58 (80)
19 PF13360 PQQ_2: PQQ-like domai 70.8 17 0.00037 33.8 7.5 71 87-157 13-102 (238)
20 PF14269 Arylsulfotran_2: Aryl 69.5 53 0.0012 32.8 11.1 11 136-146 265-275 (299)
21 PF13360 PQQ_2: PQQ-like domai 65.7 41 0.0009 31.1 9.0 71 87-157 56-148 (238)
22 KOG4649 PQQ (pyrrolo-quinoline 65.1 25 0.00055 34.7 7.3 44 86-129 168-217 (354)
23 PRK11138 outer membrane biogen 63.6 27 0.00059 35.8 8.0 18 140-157 343-361 (394)
24 TIGR03300 assembly_YfgL outer 63.5 28 0.0006 35.3 7.9 49 108-156 72-130 (377)
25 cd00053 EGF Epidermal growth f 61.5 8.2 0.00018 24.3 2.4 30 312-341 2-32 (36)
26 PRK11138 outer membrane biogen 58.0 30 0.00065 35.5 7.1 56 102-157 120-186 (394)
27 cd05845 Ig2_L1-CAM_like Second 50.3 25 0.00054 29.0 4.0 31 87-117 34-64 (95)
28 PF01436 NHL: NHL repeat; Int 48.4 28 0.0006 21.7 3.1 21 104-124 6-26 (28)
29 PF01683 EB: EB module; Inter 46.8 20 0.00042 25.7 2.6 30 308-340 18-47 (52)
30 cd00216 PQQ_DH Dehydrogenases 44.7 70 0.0015 34.1 7.5 71 87-157 39-136 (488)
31 PF07645 EGF_CA: Calcium-bindi 44.1 7.5 0.00016 26.8 0.0 30 310-339 3-34 (42)
32 TIGR03300 assembly_YfgL outer 43.9 1.2E+02 0.0025 30.7 8.7 71 87-157 85-171 (377)
33 smart00179 EGF_CA Calcium-bind 40.7 23 0.0005 23.0 2.0 30 310-339 3-33 (39)
34 PF06006 DUF905: Bacterial pro 39.3 32 0.0007 26.7 2.8 19 144-162 35-53 (70)
35 PF05935 Arylsulfotrans: Aryls 38.9 36 0.00078 36.3 4.2 54 110-164 127-188 (477)
36 PF13570 PQQ_3: PQQ-like domai 36.9 46 0.001 22.2 3.1 8 121-128 2-9 (40)
37 PF07354 Sp38: Zona-pellucida- 35.0 42 0.00092 33.0 3.5 31 87-117 13-43 (271)
38 COG1520 FOG: WD40-like repeat 34.9 1.7E+02 0.0036 29.7 8.2 72 86-158 130-226 (370)
39 cd05852 Ig5_Contactin-1 Fifth 34.1 1E+02 0.0022 23.5 5.1 32 86-118 15-46 (73)
40 PF12458 DUF3686: ATPase invol 34.0 96 0.0021 32.6 6.1 58 50-119 310-368 (448)
41 TIGR03066 Gem_osc_para_1 Gemma 33.7 2.2E+02 0.0049 24.3 7.3 53 101-153 34-104 (111)
42 PF05935 Arylsulfotrans: Aryls 31.2 1.1E+02 0.0023 32.7 6.3 59 88-148 138-207 (477)
43 cd00054 EGF_CA Calcium-binding 30.5 42 0.00092 21.2 2.0 31 310-340 3-34 (38)
44 smart00564 PQQ beta-propeller 29.6 1E+02 0.0022 19.1 3.7 19 108-126 13-32 (33)
45 PF01011 PQQ: PQQ enzyme repea 28.8 82 0.0018 20.9 3.2 22 108-129 7-29 (38)
46 PF14269 Arylsulfotran_2: Aryl 27.9 5E+02 0.011 25.9 10.1 45 105-149 149-219 (299)
47 PLN00033 photosystem II stabil 24.3 2.1E+02 0.0046 29.9 6.8 46 111-156 259-306 (398)
48 PF07974 EGF_2: EGF-like domai 24.2 56 0.0012 21.3 1.6 23 316-339 6-28 (32)
49 TIGR03075 PQQ_enz_alc_DH PQQ-d 23.6 3.5E+02 0.0076 29.3 8.6 70 88-157 48-146 (527)
50 KOG0291 WD40-repeat-containing 23.4 1.1E+03 0.025 26.8 16.9 53 103-155 354-419 (893)
51 COG1520 FOG: WD40-like repeat 23.3 1.5E+02 0.0032 30.2 5.4 56 102-157 111-179 (370)
52 KOG0640 mRNA cleavage stimulat 21.7 3.3E+02 0.0073 27.7 7.1 65 92-156 253-333 (430)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.96 E-value=4.6e-30 Score=220.12 Aligned_cols=103 Identities=48% Similarity=0.739 Sum_probs=76.6
Q ss_pred eeEEEeecCCCCccc---CceEEEcCCccEEEEeCCCcEEEEe-cCCCCc--eeEEEEeeCCCeeEeccCCeeEEeeecC
Q 041743 87 FRWVWEANRGKPVRE---NAVFSLGTDGNLVLAEADGTVVWQS-NTANKG--VLGFGLFPNGNMVLHDSKGNFIWQIFDY 160 (440)
Q Consensus 87 ~t~VW~ANr~~pv~~---~~~l~l~~~G~Lvl~~~~~~~vWss-~~~~~~--~~~~~Lld~GNlVl~~~~~~~~WqSFD~ 160 (440)
+||||+|||++|+.. ..+|.|+.||||+|++..++++|++ ++.+.+ ...|+|+|+|||||+|..+.+|||||||
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~ 81 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFDY 81 (114)
T ss_dssp --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTTS
T ss_pred cccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecCC
Confidence 589999999999943 4899999999999999999999999 666654 7889999999999999999999999999
Q ss_pred CCcccccCcccccCce----eEEEEcCCCCCCC
Q 041743 161 PTDTLLVGQSLRVGRV----TKLVSRLSVKENV 189 (440)
Q Consensus 161 PTDTLLPGq~L~~~~~----~~L~S~~S~~dps 189 (440)
||||+||+|+|+.+.. ..|+||++.+|||
T Consensus 82 ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 82 PTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp SS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred CccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 9999999999987421 2489999999986
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.93 E-value=1.8e-25 Score=192.19 Aligned_cols=108 Identities=38% Similarity=0.618 Sum_probs=96.4
Q ss_pred ceeEeecCCcEEEEEEeCCCCC-eEEEEEEeeecCCCceeEEEeecCCCCcccCceEEEcCCccEEEEeCCCcEEEEecC
Q 041743 50 YRMSGIYNDPFQLGFYNTTPNA-FTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGTDGNLVLAEADGTVVWQSNT 128 (440)
Q Consensus 50 ~~~l~s~~g~F~lGF~~~~~~~-f~l~Iw~~~~~~~~~~t~VW~ANr~~pv~~~~~l~l~~~G~Lvl~~~~~~~vWss~~ 128 (440)
++.|+|+++.|++|||...... ++++|||.... .++||.|||+.|....++|.|+.||+|+|+|.+|.++|++++
T Consensus 7 ~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~----~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~~ 82 (116)
T cd00028 7 GQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSS----RTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSGTVVWSSNT 82 (116)
T ss_pred CCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCC----CeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCCcEEEEecc
Confidence 6789999999999999876554 88999997642 468999999999666789999999999999999999999998
Q ss_pred CC-CceeEEEEeeCCCeeEeccCCeeEEeeecCC
Q 041743 129 AN-KGVLGFGLFPNGNMVLHDSKGNFIWQIFDYP 161 (440)
Q Consensus 129 ~~-~~~~~~~Lld~GNlVl~~~~~~~~WqSFD~P 161 (440)
.+ .+..+|+|+|+|||||++.++.+||||||||
T Consensus 83 ~~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~P 116 (116)
T cd00028 83 TRVNGNYVLVLLDDGNLVLYDSDGNFLWQSFDYP 116 (116)
T ss_pred cCCCCceEEEEeCCCCEEEECCCCCEEEcCCCCC
Confidence 76 5677899999999999999999999999999
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.92 E-value=1.3e-24 Score=186.32 Aligned_cols=108 Identities=39% Similarity=0.631 Sum_probs=96.2
Q ss_pred CceeEeecCCcEEEEEEeCCCCCeEEEEEEeeecCCCceeEEEeecCCCCcccCceEEEcCCccEEEEeCCCcEEEEecC
Q 041743 49 NYRMSGIYNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGTDGNLVLAEADGTVVWQSNT 128 (440)
Q Consensus 49 ~~~~l~s~~g~F~lGF~~~~~~~f~l~Iw~~~~~~~~~~t~VW~ANr~~pv~~~~~l~l~~~G~Lvl~~~~~~~vWss~~ 128 (440)
+++.|+|+++.|++|||......++++|||.... .++||+|||+.|+..+++|.|++||+|+|++++|.++|++++
T Consensus 6 ~~~~l~s~~~~f~~G~~~~~~q~dgnlV~~~~~~----~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~t 81 (114)
T smart00108 6 SGQTLVSGNSLFELGFFTLIMQNDYNLILYKSSS----RTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSNT 81 (114)
T ss_pred CCCEEecCCCcEeeeccccCCCCCEEEEEEECCC----CcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEecc
Confidence 3678999999999999987666688999997642 368999999999887789999999999999999999999998
Q ss_pred C-CCceeEEEEeeCCCeeEeccCCeeEEeeecC
Q 041743 129 A-NKGVLGFGLFPNGNMVLHDSKGNFIWQIFDY 160 (440)
Q Consensus 129 ~-~~~~~~~~Lld~GNlVl~~~~~~~~WqSFD~ 160 (440)
. +.+..+|+|+|+|||||++.++++|||||||
T Consensus 82 ~~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~ 114 (114)
T smart00108 82 TGANGNYVLVLLDDGNLVIYDSDGNFLWQSFDY 114 (114)
T ss_pred cCCCCceEEEEeCCCCEEEECCCCCEEeCCCCC
Confidence 7 5567789999999999999999999999997
No 4
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.82 E-value=5e-20 Score=156.92 Aligned_cols=102 Identities=18% Similarity=0.331 Sum_probs=87.5
Q ss_pred CCCcceeeecCCCC---ceeEEEEecCCCceEEEEccCCCCeEEEEEEccCCcEEEEEecCCCCCCCceEEEeeeccccC
Q 041743 225 AGLKNLTLKSSPET---RHYKLTLDSSDGDSFIMDRPKYNSTISFLRLGIDGNLRVFTYSQEVDFLPEEERFTLFGKISR 301 (440)
Q Consensus 225 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~Ld~dG~lr~y~~~~~~~~~~W~~~~~~~~~~s~ 301 (440)
|+|++..|++.|++ ..+.+.|..++.+.++.+...+.+.++|++||++|+||+|.|.+ ..+.|.+.|++
T Consensus 4 G~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~~--~~~~W~~~~~~------ 75 (110)
T PF00954_consen 4 GPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWNE--STQSWSVFWSA------ 75 (110)
T ss_pred cccCCeEECCcccccccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeeeEEEEEEEec--CCCcEEEEEEe------
Confidence 79999999999987 23455565566778888887778889999999999999999987 46899999953
Q ss_pred CCCCCCCCCCCCCccCCCCCccccCCCCccCCCCCCCCC
Q 041743 302 GNDGINWGNECQMPDRCGKLGLCEDEQCVACPTENGLIG 340 (440)
Q Consensus 302 ~~~~~~p~d~C~~~~~CG~~giC~~~~~~~C~C~~g~~~ 340 (440)
|.++||+|+.||+||+|+.+..+.|.|++||..
T Consensus 76 ------p~d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 76 ------PKDQCDVYGFCGPNGICNSNNSPKCSCLPGFEP 108 (110)
T ss_pred ------cccCCCCccccCCccEeCCCCCCceECCCCcCC
Confidence 689999999999999999888889999999864
No 5
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.49 E-value=7.4e-14 Score=112.21 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=62.7
Q ss_pred ccccCCC--ceeEEEEeeeeccCceeceecccccccCHHHHHHHhhcCCCeeEEEeCCCCCceEEcc-ccccceecCCCC
Q 041743 351 VNFCGTK--DFHYYKLESVVHYMCTYNYFDGIGANISIEACGKRCSSDCRCVGYFYDTSFPTCWIAF-DLKTLTKAPDSP 427 (440)
Q Consensus 351 ~~~C~~~--~~~f~~l~~v~~~~~~~~~~~~~~~~~s~~~C~~~CL~nCsC~a~~y~~~~~~C~~~~-~L~~~~~~~~~~ 427 (440)
+++|... .+.|++++++++|+..+.. ...++++|+++||+||+|+||+|.+++++|++|. .+.+.+.....+
T Consensus 2 ~~~C~~~~~~~~f~~~~~~~~~~~~~~~-----~~~s~~~C~~~Cl~nCsC~a~~~~~~~~~C~~~~~~~~~~~~~~~~~ 76 (84)
T cd01098 2 PLNCGGDGSTDGFLKLPDVKLPDNASAI-----TAISLEECREACLSNCSCTAYAYNNGSGGCLLWNGLLNNLRSLSSGG 76 (84)
T ss_pred CcccCCCCCCCEEEEeCCeeCCCchhhh-----ccCCHHHHHHHHhcCCCcceeeecCCCCeEEEEeceecceEeecCCC
Confidence 3567554 3689999999998765432 1689999999999999999999987788999996 566665544445
Q ss_pred ceEEEEEe
Q 041743 428 IVGFIKVS 435 (440)
Q Consensus 428 ~~~yiKv~ 435 (440)
..+||||+
T Consensus 77 ~~~yiKv~ 84 (84)
T cd01098 77 GTLYLRLA 84 (84)
T ss_pred cEEEEEeC
Confidence 88999986
No 6
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.45 E-value=9.5e-14 Score=107.46 Aligned_cols=61 Identities=28% Similarity=0.518 Sum_probs=50.3
Q ss_pred CceeEEEEeeeeccCceeceecccccccCHHHHHHHhhcCCCeeEEEeCC--CCCceEEcc-ccccc
Q 041743 357 KDFHYYKLESVVHYMCTYNYFDGIGANISIEACGKRCSSDCRCVGYFYDT--SFPTCWIAF-DLKTL 420 (440)
Q Consensus 357 ~~~~f~~l~~v~~~~~~~~~~~~~~~~~s~~~C~~~CL~nCsC~a~~y~~--~~~~C~~~~-~L~~~ 420 (440)
.++.|++|++|++|+.....+. . ++++++||++||+||||+||+|.+ ++++|++|. +|.|+
T Consensus 3 ~~d~F~~l~~~~~p~~~~~~~~-~--~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 3 SGDGFLKLPNMKLPDFDNAIVD-S--SVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYGDLVDL 66 (66)
T ss_pred CCCEEEEECCeeCCCCcceeee-c--CCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcCEeecC
Confidence 3578999999999987654421 2 589999999999999999999985 678999995 78764
No 7
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.24 E-value=1.3e-11 Score=99.00 Aligned_cols=67 Identities=9% Similarity=0.122 Sum_probs=56.0
Q ss_pred eeEEEEeeeeccCceeceecccccccCHHHHHHHhhc---CCCeeEEEeCCCCCceEEcc-cc-ccceecCCCCceEEEE
Q 041743 359 FHYYKLESVVHYMCTYNYFDGIGANISIEACGKRCSS---DCRCVGYFYDTSFPTCWIAF-DL-KTLTKAPDSPIVGFIK 433 (440)
Q Consensus 359 ~~f~~l~~v~~~~~~~~~~~~~~~~~s~~~C~~~CL~---nCsC~a~~y~~~~~~C~~~~-~L-~~~~~~~~~~~~~yiK 433 (440)
..|+++.+|+.|+.. ..++++|+++|++ ||+|.||+|...+.+|++|. +| .++++..+.+.++|||
T Consensus 9 g~fl~~~~~klpd~~---------~~s~~eC~~~Cl~~~~nCsC~Aya~~~~~~gC~~W~~~l~~d~~~~~~~g~~Ly~r 79 (80)
T cd00129 9 GTTLIKIALKIKTTK---------ANTADECANRCEKNGLPFSCKAFVFAKARKQCLWFPFNSMSGVRKEFSHGFDLYEN 79 (80)
T ss_pred CeEEEeecccCCccc---------ccCHHHHHHHHhcCCCCCCceeeeccCCCCCeEEecCcchhhHHhccCCCceeEeE
Confidence 468899889876432 3689999999999 99999999976557899996 78 8888777778999998
Q ss_pred E
Q 041743 434 V 434 (440)
Q Consensus 434 v 434 (440)
.
T Consensus 80 ~ 80 (80)
T cd00129 80 K 80 (80)
T ss_pred C
Confidence 4
No 8
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.71 E-value=7.2e-08 Score=82.44 Aligned_cols=85 Identities=29% Similarity=0.489 Sum_probs=61.9
Q ss_pred eEEEcCCccEEEEeCC-CcEEEEecCCCC--ceeEEEEeeCCCeeEeccCCeeEEeeecCCCcccccCcccccCceeEEE
Q 041743 104 VFSLGTDGNLVLAEAD-GTVVWQSNTANK--GVLGFGLFPNGNMVLHDSKGNFIWQIFDYPTDTLLVGQSLRVGRVTKLV 180 (440)
Q Consensus 104 ~l~l~~~G~Lvl~~~~-~~~vWss~~~~~--~~~~~~Lld~GNlVl~~~~~~~~WqSFD~PTDTLLPGq~L~~~~~~~L~ 180 (440)
++.++.||+||+++.. +.++|++++... ....+.|+++|||||++.++.++|+|= |-
T Consensus 23 ~~~~q~dgnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~-----t~--------------- 82 (114)
T smart00108 23 TLIMQNDYNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSN-----TT--------------- 82 (114)
T ss_pred ccCCCCCEEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEec-----cc---------------
Confidence 4556789999999765 579999998533 236789999999999999899999971 10
Q ss_pred EcCCCCCCCCcceEEeeCCCC-ceeeeccCCCCCceeEEEc
Q 041743 181 SRLSVKENVDGPYRFVMEPRR-LAFYYKSSNVPRPILYYTF 220 (440)
Q Consensus 181 S~~S~~dps~G~ysl~l~~~~-l~l~~~~~~~~~~~~YW~~ 220 (440)
...|.|.+.|+++| ++++ ... + .+.|.+
T Consensus 83 -------~~~~~~~~~L~ddGnlvl~-~~~-~---~~~W~S 111 (114)
T smart00108 83 -------GANGNYVLVLLDDGNLVIY-DSD-G---NFLWQS 111 (114)
T ss_pred -------CCCCceEEEEeCCCCEEEE-CCC-C---CEEeCC
Confidence 12366888898877 6664 332 2 367875
No 9
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.68 E-value=9.7e-08 Score=81.94 Aligned_cols=85 Identities=28% Similarity=0.495 Sum_probs=62.0
Q ss_pred eEEEcC-CccEEEEeCC-CcEEEEecCCC--CceeEEEEeeCCCeeEeccCCeeEEeeecCCCcccccCcccccCceeEE
Q 041743 104 VFSLGT-DGNLVLAEAD-GTVVWQSNTAN--KGVLGFGLFPNGNMVLHDSKGNFIWQIFDYPTDTLLVGQSLRVGRVTKL 179 (440)
Q Consensus 104 ~l~l~~-~G~Lvl~~~~-~~~vWss~~~~--~~~~~~~Lld~GNlVl~~~~~~~~WqSFD~PTDTLLPGq~L~~~~~~~L 179 (440)
++.++. ||+||+++.. +.++|++++.. .....+.|+++|||||++.++.++|+|--
T Consensus 23 ~~~~q~~dgnlv~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~~-------------------- 82 (116)
T cd00028 23 KLIMQSRDYNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSGTVVWSSNT-------------------- 82 (116)
T ss_pred cCCCCCCeEEEEEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCCcEEEEecc--------------------
Confidence 344565 9999999764 58999999864 34567899999999999999999999720
Q ss_pred EEcCCCCCCCCcceEEeeCCCC-ceeeeccCCCCCceeEEEc
Q 041743 180 VSRLSVKENVDGPYRFVMEPRR-LAFYYKSSNVPRPILYYTF 220 (440)
Q Consensus 180 ~S~~S~~dps~G~ysl~l~~~~-l~l~~~~~~~~~~~~YW~~ 220 (440)
+ ...+.+.+.|+++| ++++ ... + .+.|.+
T Consensus 83 -~------~~~~~~~~~L~ddGnlvl~-~~~-~---~~~W~S 112 (116)
T cd00028 83 -T------RVNGNYVLVLLDDGNLVLY-DSD-G---NFLWQS 112 (116)
T ss_pred -c------CCCCceEEEEeCCCCEEEE-CCC-C---CEEEcC
Confidence 0 02466888898877 6665 322 2 357876
No 10
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.44 E-value=7.5e-07 Score=69.75 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=53.2
Q ss_pred eeEEEEeeeeccCceeceecccccccCHHHHHHHhhc-CCCeeEEEeCCCCCceEEcc--ccccceecCCCCceEEEE
Q 041743 359 FHYYKLESVVHYMCTYNYFDGIGANISIEACGKRCSS-DCRCVGYFYDTSFPTCWIAF--DLKTLTKAPDSPIVGFIK 433 (440)
Q Consensus 359 ~~f~~l~~v~~~~~~~~~~~~~~~~~s~~~C~~~CL~-nCsC~a~~y~~~~~~C~~~~--~L~~~~~~~~~~~~~yiK 433 (440)
..|++++++.++...... .. ..++++|+++|++ +|+|.||.|..+.+.|++|. .+.+.....+.+.+.|.|
T Consensus 4 ~~f~~~~~~~l~~~~~~~---~~-~~s~~~C~~~C~~~~~~C~s~~y~~~~~~C~l~~~~~~~~~~~~~~~~~~~y~~ 77 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIV---IS-VASLEECASKCLNSNCSCRSFTYNNGTKGCLLWSESSLGDARLFPSGGVDLYEK 77 (78)
T ss_pred ceeEEecCccCCCCccee---Ec-CCCHHHHHHHhCCCCCceEEEEEcCCCCEEEEeeCCccccceecccCCceeEEe
Confidence 468899999887443321 11 5799999999999 99999999986678999996 455555445556677776
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.29 E-value=1.1e-05 Score=69.27 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=65.3
Q ss_pred eeEeecCCcEEEEEEeCCCCCeEEEEEEeeecCCCceeEEEee-cCCCCcccCceEEEcCCccEEEEeCCCcEEEEecCC
Q 041743 51 RMSGIYNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEA-NRGKPVRENAVFSLGTDGNLVLAEADGTVVWQSNTA 129 (440)
Q Consensus 51 ~~l~s~~g~F~lGF~~~~~~~f~l~Iw~~~~~~~~~~t~VW~A-Nr~~pv~~~~~l~l~~~G~Lvl~~~~~~~vWss~~~ 129 (440)
+.+.+.+|.+.|-|... +. |.|.-.. .++||.. +..........+.|.+||||||+|..+.++|++..
T Consensus 12 ~p~~~~s~~~~L~l~~d--Gn--Lvl~~~~------~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~- 80 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSD--GN--LVLYDSN------GSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFD- 80 (114)
T ss_dssp EEEEECETTEEEEEETT--SE--EEEEETT------TEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTT-
T ss_pred cccccccccccceECCC--Ce--EEEEcCC------CCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecC-
Confidence 44545458899999853 32 4443221 2569999 44444334688999999999999999999999943
Q ss_pred CCceeEEEEee--CCCeeEeccCCeeEEeeecCC
Q 041743 130 NKGVLGFGLFP--NGNMVLHDSKGNFIWQIFDYP 161 (440)
Q Consensus 130 ~~~~~~~~Lld--~GNlVl~~~~~~~~WqSFD~P 161 (440)
......+.+++ .||++ +.....++|.|=+.|
T Consensus 81 ~ptdt~L~~q~l~~~~~~-~~~~~~~sw~s~~dp 113 (114)
T PF01453_consen 81 YPTDTLLPGQKLGDGNVT-GKNDSLTSWSSNTDP 113 (114)
T ss_dssp SSS-EEEEEET--TSEEE-EESTSSEEEESS---
T ss_pred CCccEEEeccCcccCCCc-cccceEEeECCCCCC
Confidence 33445566777 88888 766678999987666
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.82 E-value=2.4e-05 Score=61.42 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=41.3
Q ss_pred EEEeeeeccCceeceecccccccCHHHHHHHhhcCCCeeEEEeCCCCCceEEccccc
Q 041743 362 YKLESVVHYMCTYNYFDGIGANISIEACGKRCSSDCRCVGYFYDTSFPTCWIAFDLK 418 (440)
Q Consensus 362 ~~l~~v~~~~~~~~~~~~~~~~~s~~~C~~~CL~nCsC~a~~y~~~~~~C~~~~~L~ 418 (440)
..+++++++..+...+ . ..+.++|+++|+.+|+|.||.|..+.+.|+++....
T Consensus 7 ~~~~~~~~~g~d~~~~--~--~~s~~~Cq~~C~~~~~C~afT~~~~~~~C~lk~~~~ 59 (73)
T cd01100 7 RQGSNVDFRGGDLSTV--F--ASSAEQCQAACTADPGCLAFTYNTKSKKCFLKSSEG 59 (73)
T ss_pred cccCCCccccCCccee--e--cCCHHHHHHHcCCCCCceEEEEECCCCeEEcccCCC
Confidence 3446777776665442 1 468999999999999999999987789999987543
No 13
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=94.81 E-value=0.041 Score=44.01 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=39.7
Q ss_pred EeeeeccCceeceecccccccCHHHHHHHhhcCCCeeEEEeCCCCC---ceEEccc
Q 041743 364 LESVVHYMCTYNYFDGIGANISIEACGKRCSSDCRCVGYFYDTSFP---TCWIAFD 416 (440)
Q Consensus 364 l~~v~~~~~~~~~~~~~~~~~s~~~C~~~CL~nCsC~a~~y~~~~~---~C~~~~~ 416 (440)
.++++++..++... . ..+.++|+++|..+=.|.+|.|..... .|+++..
T Consensus 6 ~~~~df~G~Dl~~~--~--~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 6 YKNVDFRGSDINTV--Y--VPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred ccCccccCceeeee--e--cCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 46778877777652 1 579999999999999999999986666 8999854
No 14
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=94.52 E-value=0.031 Score=39.88 Aligned_cols=32 Identities=25% Similarity=0.639 Sum_probs=17.9
Q ss_pred ccCHHHHHHHhhcCCCeeEEEeCC-----CCCceEEc
Q 041743 383 NISIEACGKRCSSDCRCVGYFYDT-----SFPTCWIA 414 (440)
Q Consensus 383 ~~s~~~C~~~CL~nCsC~a~~y~~-----~~~~C~~~ 414 (440)
..+.++|.++|..+=.|.+|.|.. ..+.|+++
T Consensus 15 ~~s~~~C~~~C~~~~~C~~~~~~~~~~~~~~~~C~LK 51 (51)
T PF14295_consen 15 ASSPEECQAACAADPGCQAFTFNPPGCPSSSGRCYLK 51 (51)
T ss_dssp ---HHHHHHHHHTSTT--EEEEETTEE----------
T ss_pred CCCHHHHHHHccCCCCCCEEEEECCCcccccccccCC
Confidence 578999999999999999999975 56788874
No 15
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=94.45 E-value=0.11 Score=40.32 Aligned_cols=51 Identities=22% Similarity=0.451 Sum_probs=40.1
Q ss_pred EEEEeeeeccCceeceecccccccCHHHHHHHhhcCCC-eeEEEeCCCCCceEEcc
Q 041743 361 YYKLESVVHYMCTYNYFDGIGANISIEACGKRCSSDCR-CVGYFYDTSFPTCWIAF 415 (440)
Q Consensus 361 f~~l~~v~~~~~~~~~~~~~~~~~s~~~C~~~CL~nCs-C~a~~y~~~~~~C~~~~ 415 (440)
|.++++..+.......+ . ..++++|.++|+.+=. |.+|.|......|.+..
T Consensus 4 f~~~~~~~l~~~~~~~~---~-v~s~~~C~~~C~~~~~~C~s~~y~~~~~~C~L~~ 55 (79)
T PF00024_consen 4 FERIPGYRLSGHSIKEI---N-VPSLEECAQLCLNEPRRCKSFNYDPSSKTCYLSS 55 (79)
T ss_dssp EEEEEEEEEESCEEEEE---E-ESSHHHHHHHHHHSTT-ESEEEEETTTTEEEEEC
T ss_pred eEEECCEEEeCCcceEE---c-CCCHHHHHhhcCcCcccCCeEEEECCCCEEEEcC
Confidence 77788877755433321 1 4599999999999999 99999998888999974
No 16
>smart00605 CW CW domain.
Probab=88.84 E-value=1.5 Score=35.85 Aligned_cols=53 Identities=26% Similarity=0.420 Sum_probs=38.3
Q ss_pred ccCHHHHHHHhhcCCCeeEEEeCCCCCceEEcc--ccccceecCC-CCceEEEEEeC
Q 041743 383 NISIEACGKRCSSDCRCVGYFYDTSFPTCWIAF--DLKTLTKAPD-SPIVGFIKVSN 436 (440)
Q Consensus 383 ~~s~~~C~~~CL~nCsC~a~~y~~~~~~C~~~~--~L~~~~~~~~-~~~~~yiKv~~ 436 (440)
..+.++|.+.|..+..|+.+..+. ...|.+.. .+..+++... .+..+=+|+..
T Consensus 21 ~~sw~~Ci~~C~~~~~Cvlay~~~-~~~C~~f~~~~~~~v~~~~~~~~~~VAfK~~~ 76 (94)
T smart00605 21 TLSWDECIQKCYEDSNCVLAYGNS-SETCYLFSYGTVLTVKKLSSSSGKKVAFKVST 76 (94)
T ss_pred CCCHHHHHHHHhCCCceEEEecCC-CCceEEEEcCCeEEEEEccCCCCcEEEEEEeC
Confidence 578999999999999999876543 56898863 4566666543 34556678754
No 17
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=87.29 E-value=1.4 Score=33.70 Aligned_cols=50 Identities=26% Similarity=0.481 Sum_probs=36.1
Q ss_pred ccCHHHHHHHhhcCCCeeEEEeCCCCCceEEcc--ccccceecC-CCCceEEEEE
Q 041743 383 NISIEACGKRCSSDCRCVGYFYDTSFPTCWIAF--DLKTLTKAP-DSPIVGFIKV 434 (440)
Q Consensus 383 ~~s~~~C~~~CL~nCsC~a~~y~~~~~~C~~~~--~L~~~~~~~-~~~~~~yiKv 434 (440)
..+.++|-+.|..+=.|..+.++ ...|++.. .+..+++.. +.+..+-+|+
T Consensus 19 ~~sw~~Cv~~C~~~~~C~la~~~--~~~C~~y~~~~i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 19 NTSWDDCVQKCYNDENCVLAYFD--SGKCYLYNYGSISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred CCCHHHHhHHhCCCCEEEEEEeC--CCCEEEEEcCCEEEEEEeecCCCeEEEEEC
Confidence 57899999999999999998887 56899873 555555543 2334444553
No 18
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=80.92 E-value=2.2 Score=33.88 Aligned_cols=33 Identities=21% Similarity=0.557 Sum_probs=29.2
Q ss_pred ccCHHHHHHHhhc--CCCeeEEEeCCCCCceEEcc
Q 041743 383 NISIEACGKRCSS--DCRCVGYFYDTSFPTCWIAF 415 (440)
Q Consensus 383 ~~s~~~C~~~CL~--nCsC~a~~y~~~~~~C~~~~ 415 (440)
..++++|.++|++ +=.|.+|.|......|.+..
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~~~~~C~L~~ 58 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNYKSKECILSD 58 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEcCCCEEEEeC
Confidence 4799999999999 88899999987788999864
No 19
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=70.77 E-value=17 Score=33.77 Aligned_cols=71 Identities=24% Similarity=0.433 Sum_probs=43.1
Q ss_pred eeEEEeecC----CCCc----ccCceEEE-cCCccEEEEeC-CCcEEEEecCCCCc-e------eEEEEe-eCCCeeEec
Q 041743 87 FRWVWEANR----GKPV----RENAVFSL-GTDGNLVLAEA-DGTVVWQSNTANKG-V------LGFGLF-PNGNMVLHD 148 (440)
Q Consensus 87 ~t~VW~ANr----~~pv----~~~~~l~l-~~~G~Lvl~~~-~~~~vWss~~~~~~-~------~~~~Ll-d~GNlVl~~ 148 (440)
...+|..+- ..++ .++..+.+ +.+|.|+.+|. +|.++|+....+.. . -.+.+. .+|.|+.+|
T Consensus 13 G~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d 92 (238)
T PF13360_consen 13 GKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALD 92 (238)
T ss_dssp TEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecc
Confidence 346777642 2222 23344444 48899999996 89999998763221 0 011222 344566667
Q ss_pred -cCCeeEEee
Q 041743 149 -SKGNFIWQI 157 (440)
Q Consensus 149 -~~~~~~WqS 157 (440)
.+|+++|+.
T Consensus 93 ~~tG~~~W~~ 102 (238)
T PF13360_consen 93 AKTGKVLWSI 102 (238)
T ss_dssp TTTSCEEEEE
T ss_pred cCCcceeeee
Confidence 679999995
No 20
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=69.53 E-value=53 Score=32.84 Aligned_cols=11 Identities=36% Similarity=0.742 Sum_probs=7.6
Q ss_pred EEEeeCCCeeE
Q 041743 136 FGLFPNGNMVL 146 (440)
Q Consensus 136 ~~Lld~GNlVl 146 (440)
+++|++||..|
T Consensus 265 ~Q~L~nGn~li 275 (299)
T PF14269_consen 265 AQRLPNGNVLI 275 (299)
T ss_pred ceECCCCCEEE
Confidence 56677777766
No 21
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=65.69 E-value=41 Score=31.10 Aligned_cols=71 Identities=20% Similarity=0.455 Sum_probs=45.1
Q ss_pred eeEEEeecCCCCcc-----cCce-EEEcCCccEEEEe-CCCcEEEEe-cCC----C---Ccee-----EEEE-eeCCCee
Q 041743 87 FRWVWEANRGKPVR-----ENAV-FSLGTDGNLVLAE-ADGTVVWQS-NTA----N---KGVL-----GFGL-FPNGNMV 145 (440)
Q Consensus 87 ~t~VW~ANr~~pv~-----~~~~-l~l~~~G~Lvl~~-~~~~~vWss-~~~----~---~~~~-----~~~L-ld~GNlV 145 (440)
.+++|...-+.++. .... +..+.+|.|+.+| .+|.++|+. ... . .... .+.+ ..+|.|+
T Consensus 56 G~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 56 GKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLV 135 (238)
T ss_dssp SEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEE
T ss_pred CCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEE
Confidence 46899988665532 2344 4445678899888 789999994 321 1 0100 1223 3378888
Q ss_pred Eec-cCCeeEEee
Q 041743 146 LHD-SKGNFIWQI 157 (440)
Q Consensus 146 l~~-~~~~~~WqS 157 (440)
.+| .+|+++|+-
T Consensus 136 ~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 136 ALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEecCCCcEEEEe
Confidence 888 569999985
No 22
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.06 E-value=25 Score=34.67 Aligned_cols=44 Identities=25% Similarity=0.410 Sum_probs=33.5
Q ss_pred ceeEEEeecCCCCcccC-----ceEEE-cCCccEEEEeCCCcEEEEecCC
Q 041743 86 VFRWVWEANRGKPVREN-----AVFSL-GTDGNLVLAEADGTVVWQSNTA 129 (440)
Q Consensus 86 ~~t~VW~ANr~~pv~~~-----~~l~l-~~~G~Lvl~~~~~~~vWss~~~ 129 (440)
+.+..|.|.|..|+-.+ ..+.+ +-||+|.-.|+.|+.||+-.+.
T Consensus 168 ~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~ 217 (354)
T KOG4649|consen 168 SSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATK 217 (354)
T ss_pred CcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCC
Confidence 34789999999998642 23333 5689999899999999986654
No 23
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=63.58 E-value=27 Score=35.81 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=8.8
Q ss_pred eCCCeeEecc-CCeeEEee
Q 041743 140 PNGNMVLHDS-KGNFIWQI 157 (440)
Q Consensus 140 d~GNlVl~~~-~~~~~WqS 157 (440)
++|.|...|. +|+++|+-
T Consensus 343 ~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred CCCEEEEEECCCCCEEEEE
Confidence 3455554443 35555553
No 24
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=63.48 E-value=28 Score=35.34 Aligned_cols=49 Identities=27% Similarity=0.605 Sum_probs=27.6
Q ss_pred cCCccEEEEe-CCCcEEEEecCCCC---ce-----eEEEEeeCCCeeEecc-CCeeEEe
Q 041743 108 GTDGNLVLAE-ADGTVVWQSNTANK---GV-----LGFGLFPNGNMVLHDS-KGNFIWQ 156 (440)
Q Consensus 108 ~~~G~Lvl~~-~~~~~vWss~~~~~---~~-----~~~~Lld~GNlVl~~~-~~~~~Wq 156 (440)
+.+|.|+-+| .+|.++|+.+.... ++ ....-..+|+|+-+|. +|+++|+
T Consensus 72 ~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 130 (377)
T TIGR03300 72 DADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWR 130 (377)
T ss_pred CCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeee
Confidence 4457777777 46788887664321 10 0111124566666665 5778886
No 25
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=61.52 E-value=8.2 Score=24.31 Aligned_cols=30 Identities=23% Similarity=0.558 Sum_probs=21.0
Q ss_pred CCCccCCCCCccccCC-CCccCCCCCCCCCC
Q 041743 312 CQMPDRCGKLGLCEDE-QCVACPTENGLIGW 341 (440)
Q Consensus 312 C~~~~~CG~~giC~~~-~~~~C~C~~g~~~~ 341 (440)
|.....|..++.|... ....|.|+.||...
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 4434678888999753 34579999987654
No 26
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=58.01 E-value=30 Score=35.50 Aligned_cols=56 Identities=25% Similarity=0.455 Sum_probs=36.5
Q ss_pred CceEEE-cCCccEEEEeC-CCcEEEEecCCCC----ce----eEEEEeeCCCeeEecc-CCeeEEee
Q 041743 102 NAVFSL-GTDGNLVLAEA-DGTVVWQSNTANK----GV----LGFGLFPNGNMVLHDS-KGNFIWQI 157 (440)
Q Consensus 102 ~~~l~l-~~~G~Lvl~~~-~~~~vWss~~~~~----~~----~~~~Lld~GNlVl~~~-~~~~~WqS 157 (440)
...+.+ +.+|.|+-+|. +|.++|+.+..+. ++ ....-..+|.|+-+|. +|+++|+-
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 345555 46788988886 6999999876431 11 1112234677777775 68999985
No 27
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=50.31 E-value=25 Score=29.03 Aligned_cols=31 Identities=26% Similarity=0.496 Sum_probs=22.9
Q ss_pred eeEEEeecCCCCcccCceEEEcCCccEEEEe
Q 041743 87 FRWVWEANRGKPVRENAVFSLGTDGNLVLAE 117 (440)
Q Consensus 87 ~t~VW~ANr~~pv~~~~~l~l~~~G~Lvl~~ 117 (440)
.++.|+-+....+.....+.++.+|||.+.+
T Consensus 34 P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~ 64 (95)
T cd05845 34 LRIYWMNSDLLHITQDERVSMGQNGNLYFAN 64 (95)
T ss_pred CEEEEECCCCccccccccEEECCCceEEEEE
Confidence 4789996554556656788888889998864
No 28
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=48.44 E-value=28 Score=21.72 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=15.2
Q ss_pred eEEEcCCccEEEEeCCCcEEE
Q 041743 104 VFSLGTDGNLVLAEADGTVVW 124 (440)
Q Consensus 104 ~l~l~~~G~Lvl~~~~~~~vW 124 (440)
-+.+.++|+|++.|..+.-||
T Consensus 6 gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEE
T ss_pred EEEEeCCCCEEEEECCCCEEE
Confidence 466667888888887666665
No 29
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=46.75 E-value=20 Score=25.74 Aligned_cols=30 Identities=20% Similarity=0.561 Sum_probs=24.2
Q ss_pred CCCCCCCccCCCCCccccCCCCccCCCCCCCCC
Q 041743 308 WGNECQMPDRCGKLGLCEDEQCVACPTENGLIG 340 (440)
Q Consensus 308 p~d~C~~~~~CG~~giC~~~~~~~C~C~~g~~~ 340 (440)
|.+.|....-|-.+++|..+ .|.|++|+..
T Consensus 18 ~g~~C~~~~qC~~~s~C~~g---~C~C~~g~~~ 47 (52)
T PF01683_consen 18 PGESCESDEQCIGGSVCVNG---RCQCPPGYVE 47 (52)
T ss_pred CCCCCCCcCCCCCcCEEcCC---EeECCCCCEe
Confidence 56789999999999999654 5888888643
No 30
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=44.70 E-value=70 Score=34.11 Aligned_cols=71 Identities=21% Similarity=0.470 Sum_probs=44.1
Q ss_pred eeEEEeecCC-------CCcccCceEEE-cCCccEEEEeC-CCcEEEEecCCCC-----------cee----EEEE--ee
Q 041743 87 FRWVWEANRG-------KPVRENAVFSL-GTDGNLVLAEA-DGTVVWQSNTANK-----------GVL----GFGL--FP 140 (440)
Q Consensus 87 ~t~VW~ANr~-------~pv~~~~~l~l-~~~G~Lvl~~~-~~~~vWss~~~~~-----------~~~----~~~L--ld 140 (440)
.+++|..+-. .|+-.+.++.+ +.+|.|+-+|. +|.++|+.+.... +++ ...+ ..
T Consensus 39 ~~~~W~~~~~~~~~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~ 118 (488)
T cd00216 39 LKVAWTFSTGDERGQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF 118 (488)
T ss_pred ceeeEEEECCCCCCcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC
Confidence 4578877543 35544555555 45799998885 6999999765321 100 0111 23
Q ss_pred CCCeeEecc-CCeeEEee
Q 041743 141 NGNMVLHDS-KGNFIWQI 157 (440)
Q Consensus 141 ~GNlVl~~~-~~~~~WqS 157 (440)
+|.++-+|. +|+++|+-
T Consensus 119 ~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 119 DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCeEEEEECCCCCEeeee
Confidence 677777776 58999993
No 31
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=44.10 E-value=7.5 Score=26.76 Aligned_cols=30 Identities=23% Similarity=0.582 Sum_probs=23.3
Q ss_pred CCCCCc-cCCCCCccccCC-CCccCCCCCCCC
Q 041743 310 NECQMP-DRCGKLGLCEDE-QCVACPTENGLI 339 (440)
Q Consensus 310 d~C~~~-~~CG~~giC~~~-~~~~C~C~~g~~ 339 (440)
|+|... ..|.+++.|... ..-.|.|++||.
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 778874 489999999753 445699999985
No 32
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=43.88 E-value=1.2e+02 Score=30.74 Aligned_cols=71 Identities=15% Similarity=0.402 Sum_probs=44.6
Q ss_pred eeEEEeecCCC-----CcccCceEEE-cCCccEEEEeC-CCcEEEEecCCCC----ce----eEEEEeeCCCeeEecc-C
Q 041743 87 FRWVWEANRGK-----PVRENAVFSL-GTDGNLVLAEA-DGTVVWQSNTANK----GV----LGFGLFPNGNMVLHDS-K 150 (440)
Q Consensus 87 ~t~VW~ANr~~-----pv~~~~~l~l-~~~G~Lvl~~~-~~~~vWss~~~~~----~~----~~~~Lld~GNlVl~~~-~ 150 (440)
.+++|..+-.. |+-+...+.+ +.+|.|+.+|. +|.++|+....+. +. ....-..+|.|+..|. +
T Consensus 85 G~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~t 164 (377)
T TIGR03300 85 GKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAAT 164 (377)
T ss_pred CcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCC
Confidence 35688755433 3334455555 56899999997 7999998765321 11 1112235677888875 6
Q ss_pred CeeEEee
Q 041743 151 GNFIWQI 157 (440)
Q Consensus 151 ~~~~WqS 157 (440)
|+++|+-
T Consensus 165 G~~~W~~ 171 (377)
T TIGR03300 165 GERLWTY 171 (377)
T ss_pred CceeeEE
Confidence 8999984
No 33
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=40.73 E-value=23 Score=22.98 Aligned_cols=30 Identities=23% Similarity=0.576 Sum_probs=21.9
Q ss_pred CCCCCccCCCCCccccCC-CCccCCCCCCCC
Q 041743 310 NECQMPDRCGKLGLCEDE-QCVACPTENGLI 339 (440)
Q Consensus 310 d~C~~~~~CG~~giC~~~-~~~~C~C~~g~~ 339 (440)
++|.....|...+.|... ....|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 667665678888899753 334699999876
No 34
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=39.25 E-value=32 Score=26.68 Aligned_cols=19 Identities=21% Similarity=0.936 Sum_probs=10.3
Q ss_pred eeEeccCCeeEEeeecCCC
Q 041743 144 MVLHDSKGNFIWQIFDYPT 162 (440)
Q Consensus 144 lVl~~~~~~~~WqSFD~PT 162 (440)
||+||.+|..+|..|.+--
T Consensus 35 lvvRd~~g~mvWRaWNFEp 53 (70)
T PF06006_consen 35 LVVRDTEGQMVWRAWNFEP 53 (70)
T ss_dssp EEEE-SS--EEEEEESSST
T ss_pred EEEEcCCCcEEEEeeccCC
Confidence 5667767777777766543
No 35
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=38.88 E-value=36 Score=36.32 Aligned_cols=54 Identities=28% Similarity=0.569 Sum_probs=31.8
Q ss_pred CccEEEEeCCCcEEEEecCCCCceeEEEEeeCCCeeEe--------ccCCeeEEeeecCCCcc
Q 041743 110 DGNLVLAEADGTVVWQSNTANKGVLGFGLFPNGNMVLH--------DSKGNFIWQIFDYPTDT 164 (440)
Q Consensus 110 ~G~Lvl~~~~~~~vWss~~~~~~~~~~~Lld~GNlVl~--------~~~~~~~WqSFD~PTDT 164 (440)
.+..+++|.+|.++|...........+..+++|+|... |-.|+++|+ ++.|...
T Consensus 127 ~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~~G~v~~~-~~l~~~~ 188 (477)
T PF05935_consen 127 SSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDLLGKVIWE-YDLPGGY 188 (477)
T ss_dssp EEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-TT--EEEE-EE--TTE
T ss_pred CceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcCCCCEEEe-eecCCcc
Confidence 46788899999999987654322222678999999864 345899999 7777643
No 36
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=36.88 E-value=46 Score=22.19 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=3.0
Q ss_pred cEEEEecC
Q 041743 121 TVVWQSNT 128 (440)
Q Consensus 121 ~~vWss~~ 128 (440)
+++|+..+
T Consensus 2 ~~~W~~~~ 9 (40)
T PF13570_consen 2 KVLWSYDT 9 (40)
T ss_dssp -EEEEEE-
T ss_pred ceeEEEEC
Confidence 44555544
No 37
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=34.99 E-value=42 Score=32.95 Aligned_cols=31 Identities=23% Similarity=0.603 Sum_probs=27.9
Q ss_pred eeEEEeecCCCCcccCceEEEcCCccEEEEe
Q 041743 87 FRWVWEANRGKPVRENAVFSLGTDGNLVLAE 117 (440)
Q Consensus 87 ~t~VW~ANr~~pv~~~~~l~l~~~G~Lvl~~ 117 (440)
++..|+--.++++++++.+.|++.|.|++.|
T Consensus 13 P~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~ 43 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSGNSYVNITETGKLMFKN 43 (271)
T ss_pred CceEEECCCCcccCCCCeEEEccCceEEeec
Confidence 3679999999999999999999999999975
No 38
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=34.92 E-value=1.7e+02 Score=29.75 Aligned_cols=72 Identities=28% Similarity=0.474 Sum_probs=45.0
Q ss_pred ceeEEEeecCCC-------CcccCceEEEc-CCccEEEEeCC-CcEEEEecCC---CC----------ceeEEEEee--C
Q 041743 86 VFRWVWEANRGK-------PVRENAVFSLG-TDGNLVLAEAD-GTVVWQSNTA---NK----------GVLGFGLFP--N 141 (440)
Q Consensus 86 ~~t~VW~ANr~~-------pv~~~~~l~l~-~~G~Lvl~~~~-~~~vWss~~~---~~----------~~~~~~Lld--~ 141 (440)
+.+.+|..+... |+....++.+. .+|.|+-+|++ |..+|..... .. +.+.+ -.+ +
T Consensus 130 ~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~-~~~~~~ 208 (370)
T COG1520 130 TGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYV-GSDGYD 208 (370)
T ss_pred CCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEE-ecCCCc
Confidence 356789887766 23334566665 68999999987 9999995442 11 11111 112 4
Q ss_pred CCeeEecc-CCeeEEeee
Q 041743 142 GNMVLHDS-KGNFIWQIF 158 (440)
Q Consensus 142 GNlVl~~~-~~~~~WqSF 158 (440)
|+|+=.+. +|..+|+.+
T Consensus 209 ~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 209 GILYALNAEDGTLKWSQK 226 (370)
T ss_pred ceEEEEEccCCcEeeeee
Confidence 56666665 688899853
No 39
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=34.08 E-value=1e+02 Score=23.48 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=22.2
Q ss_pred ceeEEEeecCCCCcccCceEEEcCCccEEEEeC
Q 041743 86 VFRWVWEANRGKPVRENAVFSLGTDGNLVLAEA 118 (440)
Q Consensus 86 ~~t~VW~ANr~~pv~~~~~l~l~~~G~Lvl~~~ 118 (440)
..++.|.-+. .++..+..+.+..+|.|+|.+.
T Consensus 15 ~p~v~W~k~~-~~l~~~~r~~~~~~g~L~I~~v 46 (73)
T cd05852 15 KPKFSWSKGT-ELLVNNSRISIWDDGSLEILNI 46 (73)
T ss_pred CCEEEEEeCC-EecccCCCEEEcCCCEEEECcC
Confidence 3478998764 4555556777777888988654
No 40
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=34.04 E-value=96 Score=32.61 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=33.8
Q ss_pred ceeEeecCCc-EEEEEEeCCCCCeEEEEEEeeecCCCceeEEEeecCCCCcccCceEEEcCCccEEEEeCC
Q 041743 50 YRMSGIYNDP-FQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGTDGNLVLAEAD 119 (440)
Q Consensus 50 ~~~l~s~~g~-F~lGF~~~~~~~f~l~Iw~~~~~~~~~~t~VW~ANr~~pv~~~~~l~l~~~G~Lvl~~~~ 119 (440)
.|.+.||||. +-.-||++..+.| +-+-|+.+..+ + .+|+..++ ..+-+||.|++..+.
T Consensus 310 ~r~vrSPNGEDvLYvF~~~~~g~~-~Ll~YN~I~k~-------v---~tPi~chG-~alf~DG~l~~fra~ 368 (448)
T PF12458_consen 310 ERKVRSPNGEDVLYVFYAREEGRY-LLLPYNLIRKE-------V---ATPIICHG-YALFEDGRLVYFRAE 368 (448)
T ss_pred EEEecCCCCceEEEEEEECCCCcE-EEEechhhhhh-------h---cCCeeccc-eeEecCCEEEEEecC
Confidence 4556788875 5556777766654 33556654321 1 44766544 233467888877654
No 41
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=33.67 E-value=2.2e+02 Score=24.28 Aligned_cols=53 Identities=19% Similarity=0.363 Sum_probs=31.8
Q ss_pred cCceEEEcCCccEEEEeCCCcE------EEEec---------CCCC---ceeEEEEeeCCCeeEeccCCee
Q 041743 101 ENAVFSLGTDGNLVLAEADGTV------VWQSN---------TANK---GVLGFGLFPNGNMVLHDSKGNF 153 (440)
Q Consensus 101 ~~~~l~l~~~G~Lvl~~~~~~~------vWss~---------~~~~---~~~~~~Lld~GNlVl~~~~~~~ 153 (440)
+...|.|..||.|+|...++.- -|+-. ..+. +-+...=+++|-|||.|++|+.
T Consensus 34 ~~~~leF~~dGKL~v~~gnng~~~~~~Gty~L~G~kLtL~~~p~g~t~k~~Vtv~~l~~~~Lvl~d~dg~~ 104 (111)
T TIGR03066 34 DDVVIEFAKDGKLVVTIGEKGKEVKADGTYKLDGNKLTLTLKAGGKEKKETLTVKKLTDDELVGKDPDGKK 104 (111)
T ss_pred CceEEEEcCCCeEEEecCCCCcEeccCceEEEECCEEEEEEcCCCccccceEEEEEecCCeEEEEcCCCCE
Confidence 4578899999999887654322 14321 1111 1111234688999999998764
No 42
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=31.16 E-value=1.1e+02 Score=32.72 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=26.8
Q ss_pred eEEEeecCCCCcccCceEEEcCCcc--------EEEEeCCCcEEEEecCCCCc---eeEEEEeeCCCeeEec
Q 041743 88 RWVWEANRGKPVRENAVFSLGTDGN--------LVLAEADGTVVWQSNTANKG---VLGFGLFPNGNMVLHD 148 (440)
Q Consensus 88 t~VW~ANr~~pv~~~~~l~l~~~G~--------Lvl~~~~~~~vWss~~~~~~---~~~~~Lld~GNlVl~~ 148 (440)
.|+|.-..+...... +.+..+|+ +...|-.|.++|.-...+.. .-.+..+++||++++.
T Consensus 138 ~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~ 207 (477)
T PF05935_consen 138 DVRWYLPLDSGSDNS--FKQLPNGNLLIGSGNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILA 207 (477)
T ss_dssp -EEEEE-GGGT--SS--EEE-TTS-EEEEEBTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEE
T ss_pred cEEEEEccCccccce--eeEcCCCCEEEecCCceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEE
Confidence 578887654322111 33444444 44567779999986654422 2446788999998753
No 43
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=30.46 E-value=42 Score=21.22 Aligned_cols=31 Identities=26% Similarity=0.638 Sum_probs=21.3
Q ss_pred CCCCCccCCCCCccccCC-CCccCCCCCCCCC
Q 041743 310 NECQMPDRCGKLGLCEDE-QCVACPTENGLIG 340 (440)
Q Consensus 310 d~C~~~~~CG~~giC~~~-~~~~C~C~~g~~~ 340 (440)
++|.....|...+.|... ....|.|++||..
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 567654578888899753 2346999888654
No 44
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=29.57 E-value=1e+02 Score=19.14 Aligned_cols=19 Identities=37% Similarity=0.772 Sum_probs=12.1
Q ss_pred cCCccEEEEeC-CCcEEEEe
Q 041743 108 GTDGNLVLAEA-DGTVVWQS 126 (440)
Q Consensus 108 ~~~G~Lvl~~~-~~~~vWss 126 (440)
+.+|.|+-+|. +|.++|+.
T Consensus 13 ~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 13 STDGTLYALDAKTGEILWTY 32 (33)
T ss_pred cCCCEEEEEEcccCcEEEEc
Confidence 44577776665 57777763
No 45
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=28.84 E-value=82 Score=20.86 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=18.1
Q ss_pred cCCccEEEEeC-CCcEEEEecCC
Q 041743 108 GTDGNLVLAEA-DGTVVWQSNTA 129 (440)
Q Consensus 108 ~~~G~Lvl~~~-~~~~vWss~~~ 129 (440)
+.+|.|+-+|. .|..+|+-++.
T Consensus 7 ~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TTTSEEEEEETTTTSEEEEEESS
T ss_pred CCCCEEEEEECCCCCEEEeeeCC
Confidence 66899998886 68999998764
No 46
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=27.93 E-value=5e+02 Score=25.86 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=26.1
Q ss_pred EEEcCCccEEE----------Ee-CCCcEEEEecCC-C----------CceeEEEEe----eCCCeeEecc
Q 041743 105 FSLGTDGNLVL----------AE-ADGTVVWQSNTA-N----------KGVLGFGLF----PNGNMVLHDS 149 (440)
Q Consensus 105 l~l~~~G~Lvl----------~~-~~~~~vWss~~~-~----------~~~~~~~Ll----d~GNlVl~~~ 149 (440)
+....+|+++| .| .+|.++|.-... + ...--|.++ ++|++-|.|.
T Consensus 149 V~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 149 VDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 34455666543 35 568899987533 1 012225666 7777777765
No 47
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=24.29 E-value=2.1e+02 Score=29.88 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=25.8
Q ss_pred ccEEEEeCCCcEEEEecCCC--CceeEEEEeeCCCeeEeccCCeeEEe
Q 041743 111 GNLVLAEADGTVVWQSNTAN--KGVLGFGLFPNGNMVLHDSKGNFIWQ 156 (440)
Q Consensus 111 G~Lvl~~~~~~~vWss~~~~--~~~~~~~Lld~GNlVl~~~~~~~~Wq 156 (440)
|++++.+.+|...|..-... .....+...++|.+||....|.++|.
T Consensus 259 G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S 306 (398)
T PLN00033 259 GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVS 306 (398)
T ss_pred ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEe
Confidence 44333333444456643322 22344556788999998877776654
No 48
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=24.22 E-value=56 Score=21.32 Aligned_cols=23 Identities=26% Similarity=0.725 Sum_probs=16.8
Q ss_pred cCCCCCccccCCCCccCCCCCCCC
Q 041743 316 DRCGKLGLCEDEQCVACPTENGLI 339 (440)
Q Consensus 316 ~~CG~~giC~~~~~~~C~C~~g~~ 339 (440)
..|..+|.|... .-.|.|.+||.
T Consensus 6 ~~C~~~G~C~~~-~g~C~C~~g~~ 28 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGRCVCDSGYT 28 (32)
T ss_pred CccCCCCEEeCC-CCEEECCCCCc
Confidence 568888999754 33688988854
No 49
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=23.65 E-value=3.5e+02 Score=29.30 Aligned_cols=70 Identities=19% Similarity=0.415 Sum_probs=42.4
Q ss_pred eEEEeecCC-------CCcccCceEEE-cCCccEEEEeC-CCcEEEEecCCC--------------Ccee----EEEE-e
Q 041743 88 RWVWEANRG-------KPVRENAVFSL-GTDGNLVLAEA-DGTVVWQSNTAN--------------KGVL----GFGL-F 139 (440)
Q Consensus 88 t~VW~ANr~-------~pv~~~~~l~l-~~~G~Lvl~~~-~~~~vWss~~~~--------------~~~~----~~~L-l 139 (440)
+++|...-. .|+-.+.+|.+ +.+|.|+-+|. +|.++|+.+... ++++ .+.+ .
T Consensus 48 ~~~W~~~~g~~~g~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t 127 (527)
T TIGR03075 48 QPAWTFSLGKLRGQESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT 127 (527)
T ss_pred eEEEEEECCCCCCcccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc
Confidence 456765432 35555566666 45688888885 689999976421 1110 0111 2
Q ss_pred eCCCeeEecc-CCeeEEee
Q 041743 140 PNGNMVLHDS-KGNFIWQI 157 (440)
Q Consensus 140 d~GNlVl~~~-~~~~~WqS 157 (440)
-+|.|+-+|. +|+++|+-
T Consensus 128 ~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 128 LDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCCEEEEEECCCCCEEeec
Confidence 3567777776 59999984
No 50
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=23.41 E-value=1.1e+03 Score=26.82 Aligned_cols=53 Identities=32% Similarity=0.700 Sum_probs=39.7
Q ss_pred ceEEEcCCccEEEEeC-CCcE-EEEecCC---------CCceeEEEEeeCCCeeEecc-CCee-EE
Q 041743 103 AVFSLGTDGNLVLAEA-DGTV-VWQSNTA---------NKGVLGFGLFPNGNMVLHDS-KGNF-IW 155 (440)
Q Consensus 103 ~~l~l~~~G~Lvl~~~-~~~~-vWss~~~---------~~~~~~~~Lld~GNlVl~~~-~~~~-~W 155 (440)
..+....||.++.+.+ ||.+ ||.+... ..+++..+..-+||.+|-.+ +|.| .|
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 5788899999999854 5655 8998752 34677788999999999754 5654 44
No 51
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=23.29 E-value=1.5e+02 Score=30.17 Aligned_cols=56 Identities=23% Similarity=0.444 Sum_probs=38.0
Q ss_pred CceEEEc-CCccEEEEeC-CCcEEEEecCCC-----CceeE---EE-Ee-eCCCeeEeccC-CeeEEee
Q 041743 102 NAVFSLG-TDGNLVLAEA-DGTVVWQSNTAN-----KGVLG---FG-LF-PNGNMVLHDSK-GNFIWQI 157 (440)
Q Consensus 102 ~~~l~l~-~~G~Lvl~~~-~~~~vWss~~~~-----~~~~~---~~-Ll-d~GNlVl~~~~-~~~~WqS 157 (440)
.+++.+. .+|.|.-+|. +|..+|+.+..+ .+.+. .. .. ++|.++-.+.+ |..+|+=
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTY 179 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEE
Confidence 3666664 5677888888 899999988765 11111 11 22 57888888776 8899983
No 52
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=21.67 E-value=3.3e+02 Score=27.68 Aligned_cols=65 Identities=20% Similarity=0.429 Sum_probs=43.9
Q ss_pred eecCCCCcccC-ceEEEcCCccEEEEeC-CCcE-EEEecC-----------CCCceeEEEEeeCCCeeEeccCCe--eEE
Q 041743 92 EANRGKPVREN-AVFSLGTDGNLVLAEA-DGTV-VWQSNT-----------ANKGVLGFGLFPNGNMVLHDSKGN--FIW 155 (440)
Q Consensus 92 ~ANr~~pv~~~-~~l~l~~~G~Lvl~~~-~~~~-vWss~~-----------~~~~~~~~~Lld~GNlVl~~~~~~--~~W 155 (440)
.||.++.+.+. ..+.-+..|+|+++.+ +|.+ +|---. .+..+..|+...+|..+|-..... -||
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 46666655554 4677888999999854 5665 786321 123478899999999999764322 377
Q ss_pred e
Q 041743 156 Q 156 (440)
Q Consensus 156 q 156 (440)
+
T Consensus 333 E 333 (430)
T KOG0640|consen 333 E 333 (430)
T ss_pred e
Confidence 6
Done!