Query 041747
Match_columns 211
No_of_seqs 113 out of 1690
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 10:12:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 8.1E-23 1.7E-27 184.2 16.0 190 10-211 8-217 (889)
2 PLN03210 Resistant to P. syrin 99.2 9.9E-11 2.1E-15 110.3 9.8 56 152-210 184-241 (1153)
3 PRK09376 rho transcription ter 98.3 5.8E-07 1.3E-11 74.6 4.3 39 171-211 167-205 (416)
4 KOG2004 Mitochondrial ATP-depe 98.1 8.4E-05 1.8E-09 65.6 13.4 47 151-197 410-462 (906)
5 cd00009 AAA The AAA+ (ATPases 98.1 6.8E-06 1.5E-10 58.5 5.4 42 156-197 2-43 (151)
6 COG0466 Lon ATP-dependent Lon 98.1 0.00022 4.8E-09 63.1 15.1 51 151-204 322-378 (782)
7 PRK11331 5-methylcytosine-spec 98.0 1.9E-05 4E-10 67.0 7.8 57 152-211 175-231 (459)
8 PF05496 RuvB_N: Holliday junc 98.0 2E-05 4.2E-10 60.8 6.0 47 151-197 23-74 (233)
9 PRK00411 cdc6 cell division co 97.9 3.1E-05 6.7E-10 65.2 6.9 46 152-197 30-79 (394)
10 smart00763 AAA_PrkA PrkA AAA d 97.9 2.2E-05 4.7E-10 64.8 5.2 45 153-197 52-102 (361)
11 TIGR00635 ruvB Holliday juncti 97.9 2.1E-05 4.6E-10 64.0 5.0 46 152-197 4-54 (305)
12 TIGR00767 rho transcription te 97.9 1.9E-05 4.1E-10 65.9 4.6 39 171-211 166-204 (415)
13 TIGR02928 orc1/cdc6 family rep 97.8 3.1E-05 6.7E-10 64.6 5.5 46 152-197 15-64 (365)
14 TIGR00763 lon ATP-dependent pr 97.8 0.00046 1E-08 63.2 13.0 45 153-197 321-371 (775)
15 PRK10787 DNA-binding ATP-depen 97.8 0.00044 9.5E-09 63.2 12.7 46 152-197 322-373 (784)
16 PRK13342 recombination factor 97.8 4.3E-05 9.3E-10 64.9 5.2 46 152-197 12-60 (413)
17 PTZ00202 tuzin; Provisional 97.7 6.4E-05 1.4E-09 63.5 5.8 48 150-197 260-310 (550)
18 TIGR02903 spore_lon_C ATP-depe 97.7 0.0024 5.1E-08 57.1 14.9 46 152-197 154-199 (615)
19 COG0488 Uup ATPase components 97.7 0.0002 4.4E-09 62.4 7.9 27 171-197 346-372 (530)
20 TIGR03420 DnaA_homol_Hda DnaA 97.7 0.00012 2.5E-09 56.9 5.9 42 156-197 21-62 (226)
21 PRK00080 ruvB Holliday junctio 97.6 7.5E-05 1.6E-09 61.5 5.0 46 152-197 25-75 (328)
22 PRK09270 nucleoside triphospha 97.6 0.00011 2.3E-09 57.5 4.9 27 171-197 31-57 (229)
23 PRK12402 replication factor C 97.6 0.00013 2.8E-09 60.1 5.4 46 152-197 15-60 (337)
24 TIGR03015 pepcterm_ATPase puta 97.5 0.00017 3.7E-09 57.4 5.7 27 171-197 41-67 (269)
25 COG2255 RuvB Holliday junction 97.5 0.00016 3.4E-09 57.4 5.2 47 151-197 25-76 (332)
26 PF12061 DUF3542: Protein of u 97.5 0.00018 3.9E-09 57.6 5.4 103 7-123 298-401 (402)
27 PRK04195 replication factor C 97.5 0.0001 2.3E-09 63.8 4.4 47 151-197 13-63 (482)
28 TIGR00554 panK_bact pantothena 97.5 0.00015 3.3E-09 58.4 4.8 26 171-196 60-85 (290)
29 COG1120 FepC ABC-type cobalami 97.5 9.6E-05 2.1E-09 58.3 3.4 27 171-197 26-52 (258)
30 PRK15455 PrkA family serine pr 97.5 0.00015 3.3E-09 63.2 4.8 45 153-197 77-127 (644)
31 PRK06696 uridine kinase; Valid 97.5 0.00023 4.9E-09 55.4 5.4 27 171-197 20-46 (223)
32 COG2256 MGS1 ATPase related to 97.5 0.00014 3.1E-09 60.2 4.1 37 166-205 41-77 (436)
33 PRK00440 rfc replication facto 97.4 0.00025 5.4E-09 57.9 5.3 46 152-197 17-62 (319)
34 PLN03025 replication factor C 97.4 0.00026 5.6E-09 58.1 5.4 46 152-197 13-58 (319)
35 PRK13341 recombination factor 97.4 0.00025 5.5E-09 64.1 5.5 46 152-197 28-76 (725)
36 cd02019 NK Nucleoside/nucleoti 97.4 0.00016 3.6E-09 45.4 3.0 22 175-196 1-22 (69)
37 PF00005 ABC_tran: ABC transpo 97.4 0.00016 3.4E-09 51.6 3.2 26 172-197 10-35 (137)
38 TIGR01242 26Sp45 26S proteasom 97.3 0.00033 7.1E-09 58.6 5.1 46 152-197 122-180 (364)
39 PRK14963 DNA polymerase III su 97.3 0.00036 7.8E-09 60.7 5.4 46 152-197 14-60 (504)
40 PRK10463 hydrogenase nickel in 97.3 0.00072 1.6E-08 54.4 6.6 35 163-197 94-128 (290)
41 cd03225 ABC_cobalt_CbiO_domain 97.3 0.00021 4.6E-09 54.9 3.5 27 171-197 25-51 (211)
42 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.00021 4.6E-09 55.2 3.4 27 171-197 28-54 (218)
43 PHA02544 44 clamp loader, smal 97.3 0.00039 8.4E-09 56.9 5.1 47 151-197 20-67 (316)
44 COG1121 ZnuC ABC-type Mn/Zn tr 97.3 0.00022 4.7E-09 56.2 3.4 26 171-196 28-53 (254)
45 cd03238 ABC_UvrA The excision 97.3 0.00024 5.2E-09 53.2 3.4 23 172-194 20-42 (176)
46 PF13191 AAA_16: AAA ATPase do 97.3 0.00034 7.4E-09 52.2 4.3 27 171-197 22-48 (185)
47 TIGR00960 3a0501s02 Type II (G 97.3 0.00024 5.3E-09 54.8 3.4 27 171-197 27-53 (216)
48 cd03222 ABC_RNaseL_inhibitor T 97.3 0.00026 5.7E-09 53.1 3.4 27 171-197 23-49 (177)
49 CHL00095 clpC Clp protease ATP 97.3 0.00039 8.5E-09 64.1 5.0 46 152-197 179-224 (821)
50 cd03293 ABC_NrtD_SsuB_transpor 97.2 0.00026 5.7E-09 54.8 3.3 27 171-197 28-54 (220)
51 cd03261 ABC_Org_Solvent_Resist 97.2 0.00028 6.1E-09 55.2 3.4 27 171-197 24-50 (235)
52 cd03229 ABC_Class3 This class 97.2 0.0003 6.6E-09 52.7 3.5 27 171-197 24-50 (178)
53 KOG2028 ATPase related to the 97.2 0.00046 1E-08 56.8 4.6 46 149-197 141-186 (554)
54 cd03259 ABC_Carb_Solutes_like 97.2 0.00029 6.4E-09 54.2 3.5 27 171-197 24-50 (213)
55 TIGR00073 hypB hydrogenase acc 97.2 0.00038 8.2E-09 53.5 4.0 30 167-196 16-45 (207)
56 cd03263 ABC_subfamily_A The AB 97.2 0.0003 6.6E-09 54.4 3.5 27 171-197 26-52 (220)
57 cd03269 ABC_putative_ATPase Th 97.2 0.00031 6.7E-09 54.0 3.5 27 171-197 24-50 (210)
58 PRK10584 putative ABC transpor 97.2 0.00031 6.6E-09 54.7 3.5 27 171-197 34-60 (228)
59 TIGR02673 FtsE cell division A 97.2 0.00031 6.7E-09 54.1 3.4 27 171-197 26-52 (214)
60 cd03297 ABC_ModC_molybdenum_tr 97.2 0.00031 6.6E-09 54.2 3.3 26 171-197 22-47 (214)
61 COG1126 GlnQ ABC-type polar am 97.2 0.00035 7.5E-09 53.5 3.5 27 171-197 26-52 (240)
62 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00032 6.9E-09 53.7 3.4 27 171-197 24-50 (205)
63 cd03296 ABC_CysA_sulfate_impor 97.2 0.00032 7E-09 55.0 3.4 27 171-197 26-52 (239)
64 cd03235 ABC_Metallic_Cations A 97.2 0.0003 6.6E-09 54.1 3.2 27 171-197 23-49 (213)
65 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00093 2E-08 47.6 5.4 26 172-197 21-46 (133)
66 PF03193 DUF258: Protein of un 97.2 0.00058 1.3E-08 50.2 4.5 36 159-197 24-59 (161)
67 TIGR02211 LolD_lipo_ex lipopro 97.2 0.00034 7.3E-09 54.2 3.5 27 171-197 29-55 (221)
68 cd03265 ABC_DrrA DrrA is the A 97.2 0.00035 7.5E-09 54.1 3.5 27 171-197 24-50 (220)
69 cd03260 ABC_PstB_phosphate_tra 97.2 0.00036 7.8E-09 54.3 3.6 27 171-197 24-50 (227)
70 TIGR02315 ABC_phnC phosphonate 97.2 0.00034 7.4E-09 55.0 3.4 27 171-197 26-52 (243)
71 COG1136 SalX ABC-type antimicr 97.2 0.00036 7.9E-09 54.0 3.5 26 171-196 29-54 (226)
72 PRK14962 DNA polymerase III su 97.2 0.00068 1.5E-08 58.5 5.5 46 152-197 14-60 (472)
73 TIGR02881 spore_V_K stage V sp 97.2 0.00061 1.3E-08 54.3 4.9 25 172-196 41-65 (261)
74 cd03256 ABC_PhnC_transporter A 97.2 0.00035 7.6E-09 54.8 3.4 27 171-197 25-51 (241)
75 PRK03992 proteasome-activating 97.2 0.00058 1.2E-08 57.6 4.9 46 152-197 131-189 (389)
76 PRK13541 cytochrome c biogenes 97.2 0.00039 8.4E-09 52.9 3.5 27 171-197 24-50 (195)
77 TIGR03345 VI_ClpV1 type VI sec 97.2 0.00057 1.2E-08 63.1 5.1 47 151-197 186-232 (852)
78 cd03237 ABC_RNaseL_inhibitor_d 97.2 0.00038 8.3E-09 55.0 3.5 26 172-197 24-49 (246)
79 cd03292 ABC_FtsE_transporter F 97.2 0.00039 8.4E-09 53.5 3.4 27 171-197 25-51 (214)
80 COG1124 DppF ABC-type dipeptid 97.2 0.00064 1.4E-08 52.9 4.5 27 171-197 31-57 (252)
81 TIGR03864 PQQ_ABC_ATP ABC tran 97.2 0.0004 8.7E-09 54.4 3.5 27 171-197 25-51 (236)
82 PRK13538 cytochrome c biogenes 97.2 0.00041 8.9E-09 53.1 3.5 27 171-197 25-51 (204)
83 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00048 1E-08 47.1 3.4 23 172-194 14-36 (107)
84 TIGR02030 BchI-ChlI magnesium 97.1 0.00087 1.9E-08 55.3 5.5 45 152-196 4-48 (337)
85 cd03257 ABC_NikE_OppD_transpor 97.1 0.00039 8.5E-09 54.0 3.3 27 171-197 29-55 (228)
86 PRK11248 tauB taurine transpor 97.1 0.00041 8.9E-09 55.1 3.5 27 171-197 25-51 (255)
87 PRK03846 adenylylsulfate kinas 97.1 0.00049 1.1E-08 52.5 3.8 27 171-197 22-48 (198)
88 TIGR03608 L_ocin_972_ABC putat 97.1 0.00041 8.9E-09 53.1 3.4 26 172-197 23-48 (206)
89 PRK10247 putative ABC transpor 97.1 0.00043 9.3E-09 53.9 3.5 27 171-197 31-57 (225)
90 PRK11629 lolD lipoprotein tran 97.1 0.00042 9.2E-09 54.1 3.4 27 171-197 33-59 (233)
91 TIGR02639 ClpA ATP-dependent C 97.1 0.00069 1.5E-08 61.7 5.2 46 152-197 182-227 (731)
92 COG1116 TauB ABC-type nitrate/ 97.1 0.00045 9.7E-09 53.9 3.4 26 171-196 27-52 (248)
93 cd03224 ABC_TM1139_LivF_branch 97.1 0.00044 9.5E-09 53.6 3.4 27 171-197 24-50 (222)
94 cd03301 ABC_MalK_N The N-termi 97.1 0.00045 9.8E-09 53.1 3.5 27 171-197 24-50 (213)
95 cd03258 ABC_MetN_methionine_tr 97.1 0.00045 9.8E-09 53.9 3.5 27 171-197 29-55 (233)
96 cd03219 ABC_Mj1267_LivG_branch 97.1 0.00043 9.3E-09 54.2 3.2 27 171-197 24-50 (236)
97 PRK13540 cytochrome c biogenes 97.1 0.00049 1.1E-08 52.5 3.5 27 171-197 25-51 (200)
98 cd03218 ABC_YhbG The ABC trans 97.1 0.00047 1E-08 53.8 3.4 26 172-197 25-50 (232)
99 TIGR01978 sufC FeS assembly AT 97.1 0.00047 1E-08 54.2 3.4 26 171-196 24-49 (243)
100 cd03268 ABC_BcrA_bacitracin_re 97.1 0.0005 1.1E-08 52.7 3.5 27 171-197 24-50 (208)
101 PRK14961 DNA polymerase III su 97.1 0.001 2.2E-08 55.7 5.5 46 152-197 16-62 (363)
102 PRK08727 hypothetical protein; 97.1 0.0015 3.3E-08 51.2 6.2 43 155-197 23-65 (233)
103 PRK11247 ssuB aliphatic sulfon 97.1 0.00049 1.1E-08 54.7 3.4 27 171-197 36-62 (257)
104 cd03262 ABC_HisP_GlnQ_permease 97.1 0.00051 1.1E-08 52.8 3.5 27 171-197 24-50 (213)
105 TIGR01189 ccmA heme ABC export 97.1 0.00053 1.1E-08 52.2 3.5 27 171-197 24-50 (198)
106 cd03295 ABC_OpuCA_Osmoprotecti 97.1 0.00051 1.1E-08 54.0 3.5 27 171-197 25-51 (242)
107 cd03264 ABC_drug_resistance_li 97.1 0.00041 8.9E-09 53.3 2.8 23 175-197 27-49 (211)
108 PRK10908 cell division protein 97.1 0.00053 1.2E-08 53.2 3.5 27 171-197 26-52 (222)
109 PRK08084 DNA replication initi 97.1 0.0012 2.5E-08 51.9 5.4 40 158-197 30-69 (235)
110 PRK11124 artP arginine transpo 97.1 0.00053 1.2E-08 53.9 3.5 27 171-197 26-52 (242)
111 PRK13539 cytochrome c biogenes 97.1 0.00055 1.2E-08 52.5 3.5 27 171-197 26-52 (207)
112 TIGR03499 FlhF flagellar biosy 97.1 0.00083 1.8E-08 54.2 4.6 26 172-197 193-218 (282)
113 PRK09544 znuC high-affinity zi 97.1 0.00055 1.2E-08 54.3 3.5 27 171-197 28-54 (251)
114 KOG0927 Predicted transporter 97.1 0.0053 1.1E-07 53.0 9.4 27 171-197 414-440 (614)
115 PRK14242 phosphate transporter 97.1 0.00055 1.2E-08 54.2 3.5 26 171-196 30-55 (253)
116 COG0410 LivF ABC-type branched 97.1 0.00059 1.3E-08 52.6 3.4 27 171-197 27-53 (237)
117 cd03246 ABCC_Protease_Secretio 97.0 0.00066 1.4E-08 50.6 3.6 27 171-197 26-52 (173)
118 PRK14247 phosphate ABC transpo 97.0 0.00058 1.3E-08 53.9 3.5 27 171-197 27-53 (250)
119 TIGR02324 CP_lyasePhnL phospho 97.0 0.0006 1.3E-08 52.9 3.5 27 171-197 32-58 (224)
120 cd03266 ABC_NatA_sodium_export 97.0 0.0006 1.3E-08 52.7 3.4 27 171-197 29-55 (218)
121 PRK14250 phosphate ABC transpo 97.0 0.0006 1.3E-08 53.6 3.4 27 171-197 27-53 (241)
122 PRK09493 glnQ glutamine ABC tr 97.0 0.00061 1.3E-08 53.5 3.4 27 171-197 25-51 (240)
123 PRK14956 DNA polymerase III su 97.0 0.0011 2.3E-08 57.0 5.1 47 151-197 17-64 (484)
124 cd03228 ABCC_MRP_Like The MRP 97.0 0.00068 1.5E-08 50.4 3.5 27 171-197 26-52 (171)
125 cd03252 ABCC_Hemolysin The ABC 97.0 0.00062 1.3E-08 53.3 3.4 27 171-197 26-52 (237)
126 PRK10865 protein disaggregatio 97.0 0.00087 1.9E-08 62.0 4.8 46 152-197 178-223 (857)
127 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.00066 1.4E-08 49.1 3.3 27 171-197 24-50 (144)
128 PRK10536 hypothetical protein; 97.0 0.0056 1.2E-07 48.5 8.6 44 152-197 55-98 (262)
129 cd03214 ABC_Iron-Siderophores_ 97.0 0.00069 1.5E-08 50.8 3.5 27 171-197 23-49 (180)
130 PRK10895 lipopolysaccharide AB 97.0 0.00064 1.4E-08 53.4 3.4 27 171-197 27-53 (241)
131 PRK11264 putative amino-acid A 97.0 0.00065 1.4E-08 53.6 3.5 27 171-197 27-53 (250)
132 PRK14245 phosphate ABC transpo 97.0 0.00065 1.4E-08 53.7 3.5 25 171-195 27-51 (250)
133 cd03245 ABCC_bacteriocin_expor 97.0 0.00067 1.4E-08 52.5 3.5 27 171-197 28-54 (220)
134 TIGR00972 3a0107s01c2 phosphat 97.0 0.00066 1.4E-08 53.5 3.5 27 171-197 25-51 (247)
135 cd03223 ABCD_peroxisomal_ALDP 97.0 0.00072 1.6E-08 50.1 3.5 27 171-197 25-51 (166)
136 cd03231 ABC_CcmA_heme_exporter 97.0 0.00067 1.5E-08 51.8 3.4 27 171-197 24-50 (201)
137 cd03267 ABC_NatA_like Similar 97.0 0.00065 1.4E-08 53.2 3.4 27 171-197 45-71 (236)
138 cd03216 ABC_Carb_Monos_I This 97.0 0.0007 1.5E-08 50.0 3.4 27 171-197 24-50 (163)
139 TIGR01277 thiQ thiamine ABC tr 97.0 0.00065 1.4E-08 52.4 3.3 27 171-197 22-48 (213)
140 cd03232 ABC_PDR_domain2 The pl 97.0 0.00065 1.4E-08 51.5 3.3 26 171-196 31-56 (192)
141 cd03230 ABC_DR_subfamily_A Thi 97.0 0.00071 1.5E-08 50.4 3.4 27 171-197 24-50 (173)
142 cd03294 ABC_Pro_Gly_Bertaine T 97.0 0.00066 1.4E-08 54.3 3.4 27 171-197 48-74 (269)
143 PRK14957 DNA polymerase III su 97.0 0.0012 2.5E-08 57.9 5.1 46 152-197 16-62 (546)
144 PRK14241 phosphate transporter 97.0 0.00067 1.5E-08 53.9 3.4 27 171-197 28-54 (258)
145 cd03298 ABC_ThiQ_thiamine_tran 97.0 0.0007 1.5E-08 52.0 3.4 27 171-197 22-48 (211)
146 PRK14274 phosphate ABC transpo 97.0 0.00072 1.6E-08 53.7 3.6 27 171-197 36-62 (259)
147 PRK10575 iron-hydroxamate tran 97.0 0.00062 1.3E-08 54.3 3.2 27 171-197 35-61 (265)
148 PRK11300 livG leucine/isoleuci 97.0 0.00067 1.5E-08 53.7 3.4 27 171-197 29-55 (255)
149 PRK14955 DNA polymerase III su 97.0 0.0014 2.9E-08 55.5 5.4 47 151-197 15-62 (397)
150 TIGR03410 urea_trans_UrtE urea 97.0 0.00068 1.5E-08 52.8 3.4 27 171-197 24-50 (230)
151 COG4559 ABC-type hemin transpo 97.0 0.00059 1.3E-08 52.2 2.8 27 171-197 25-51 (259)
152 cd03247 ABCC_cytochrome_bd The 97.0 0.00075 1.6E-08 50.5 3.5 27 171-197 26-52 (178)
153 cd03215 ABC_Carb_Monos_II This 97.0 0.0007 1.5E-08 50.9 3.3 27 171-197 24-50 (182)
154 PLN02796 D-glycerate 3-kinase 97.0 0.00078 1.7E-08 55.4 3.7 26 172-197 99-124 (347)
155 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.0 0.00072 1.6E-08 53.0 3.4 27 171-197 27-53 (238)
156 PRK13649 cbiO cobalt transport 97.0 0.00068 1.5E-08 54.5 3.3 27 171-197 31-57 (280)
157 PRK10619 histidine/lysine/argi 97.0 0.00072 1.6E-08 53.7 3.4 27 171-197 29-55 (257)
158 cd03251 ABCC_MsbA MsbA is an e 97.0 0.00074 1.6E-08 52.7 3.5 27 171-197 26-52 (234)
159 PRK11701 phnK phosphonate C-P 97.0 0.00069 1.5E-08 53.8 3.3 27 171-197 30-56 (258)
160 CHL00081 chlI Mg-protoporyphyr 97.0 0.0014 3E-08 54.3 5.1 47 151-197 16-62 (350)
161 PRK14239 phosphate transporter 97.0 0.00072 1.6E-08 53.4 3.4 26 171-196 29-54 (252)
162 PRK15056 manganese/iron transp 97.0 0.00072 1.6E-08 54.2 3.4 27 171-197 31-57 (272)
163 PRK14235 phosphate transporter 97.0 0.00079 1.7E-08 53.8 3.6 27 171-197 43-69 (267)
164 cd03233 ABC_PDR_domain1 The pl 97.0 0.00071 1.5E-08 51.7 3.2 27 171-197 31-57 (202)
165 PRK11831 putative ABC transpor 97.0 0.00073 1.6E-08 54.0 3.4 27 171-197 31-57 (269)
166 cd03278 ABC_SMC_barmotin Barmo 97.0 0.00066 1.4E-08 51.8 3.0 20 175-194 24-43 (197)
167 PRK13638 cbiO cobalt transport 97.0 0.0007 1.5E-08 54.2 3.3 27 171-197 25-51 (271)
168 PRK14256 phosphate ABC transpo 97.0 0.00079 1.7E-08 53.3 3.5 27 171-197 28-54 (252)
169 PRK14267 phosphate ABC transpo 97.0 0.00077 1.7E-08 53.3 3.5 27 171-197 28-54 (253)
170 PF00910 RNA_helicase: RNA hel 97.0 0.00065 1.4E-08 46.5 2.6 22 176-197 1-22 (107)
171 cd03253 ABCC_ATM1_transporter 97.0 0.00079 1.7E-08 52.6 3.5 27 171-197 25-51 (236)
172 TIGR03005 ectoine_ehuA ectoine 97.0 0.00077 1.7E-08 53.3 3.4 27 171-197 24-50 (252)
173 cd01130 VirB11-like_ATPase Typ 97.0 0.0016 3.5E-08 49.1 5.0 36 161-197 14-49 (186)
174 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.9 0.00078 1.7E-08 52.4 3.4 27 171-197 46-72 (224)
175 PRK13548 hmuV hemin importer A 96.9 0.00075 1.6E-08 53.6 3.3 27 171-197 26-52 (258)
176 PRK10744 pstB phosphate transp 96.9 0.00078 1.7E-08 53.6 3.4 27 171-197 37-63 (260)
177 PRK13531 regulatory ATPase Rav 96.9 0.0017 3.7E-08 55.8 5.6 43 153-197 21-63 (498)
178 PRK14238 phosphate transporter 96.9 0.00083 1.8E-08 53.8 3.6 27 171-197 48-74 (271)
179 PRK14259 phosphate ABC transpo 96.9 0.00079 1.7E-08 53.9 3.4 26 171-196 37-62 (269)
180 PRK06995 flhF flagellar biosyn 96.9 0.0013 2.7E-08 56.8 4.8 26 172-197 255-280 (484)
181 cd03290 ABCC_SUR1_N The SUR do 96.9 0.00084 1.8E-08 51.9 3.5 27 171-197 25-51 (218)
182 PRK14248 phosphate ABC transpo 96.9 0.00086 1.9E-08 53.6 3.6 26 171-196 45-70 (268)
183 PRK13543 cytochrome c biogenes 96.9 0.00085 1.8E-08 51.8 3.4 27 171-197 35-61 (214)
184 PRK13645 cbiO cobalt transport 96.9 0.00077 1.7E-08 54.5 3.3 27 171-197 35-61 (289)
185 cd03236 ABC_RNaseL_inhibitor_d 96.9 0.00085 1.8E-08 53.3 3.5 27 171-197 24-50 (255)
186 COG3638 ABC-type phosphate/pho 96.9 0.00089 1.9E-08 51.9 3.4 25 171-195 28-52 (258)
187 TIGR03873 F420-0_ABC_ATP propo 96.9 0.00079 1.7E-08 53.4 3.3 27 171-197 25-51 (256)
188 PRK14722 flhF flagellar biosyn 96.9 0.0014 3.1E-08 54.7 4.9 26 172-197 136-161 (374)
189 PRK13632 cbiO cobalt transport 96.9 0.00084 1.8E-08 53.8 3.4 27 171-197 33-59 (271)
190 PF03215 Rad17: Rad17 cell cyc 96.9 0.0021 4.5E-08 56.1 6.1 54 152-210 19-77 (519)
191 PRK14262 phosphate ABC transpo 96.9 0.00085 1.8E-08 53.0 3.4 26 171-196 27-52 (250)
192 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0014 3E-08 60.7 5.2 46 152-197 173-218 (852)
193 cd03274 ABC_SMC4_euk Eukaryoti 96.9 0.00075 1.6E-08 52.1 3.0 22 173-194 25-46 (212)
194 TIGR01288 nodI ATP-binding ABC 96.9 0.00086 1.9E-08 54.6 3.4 27 171-197 28-54 (303)
195 PRK11231 fecE iron-dicitrate t 96.9 0.00086 1.9E-08 53.2 3.4 27 171-197 26-52 (255)
196 PTZ00454 26S protease regulato 96.9 0.0016 3.6E-08 55.0 5.2 46 152-197 145-203 (398)
197 PRK06893 DNA replication initi 96.9 0.00098 2.1E-08 52.1 3.6 26 172-197 38-63 (229)
198 PRK05439 pantothenate kinase; 96.9 0.0017 3.7E-08 52.9 5.1 27 171-197 84-110 (311)
199 PRK14721 flhF flagellar biosyn 96.9 0.0015 3.3E-08 55.4 4.9 25 172-196 190-214 (420)
200 cd03234 ABCG_White The White s 96.9 0.00094 2E-08 51.9 3.5 27 171-197 31-57 (226)
201 PRK13640 cbiO cobalt transport 96.9 0.00089 1.9E-08 54.0 3.4 27 171-197 31-57 (282)
202 PLN02165 adenylate isopentenyl 96.9 0.00091 2E-08 54.8 3.5 31 167-197 37-67 (334)
203 PRK09580 sufC cysteine desulfu 96.9 0.00082 1.8E-08 53.0 3.2 26 171-196 25-50 (248)
204 PRK14237 phosphate transporter 96.9 0.00097 2.1E-08 53.3 3.6 27 171-197 44-70 (267)
205 PRK14273 phosphate ABC transpo 96.9 0.00093 2E-08 52.9 3.5 27 171-197 31-57 (254)
206 cd03248 ABCC_TAP TAP, the Tran 96.9 0.00097 2.1E-08 51.8 3.5 27 171-197 38-64 (226)
207 PRK13648 cbiO cobalt transport 96.9 0.00092 2E-08 53.5 3.5 27 171-197 33-59 (269)
208 PRK13547 hmuV hemin importer A 96.9 0.0009 1.9E-08 53.7 3.4 27 171-197 25-51 (272)
209 PRK14243 phosphate transporter 96.9 0.00099 2.1E-08 53.2 3.6 26 171-196 34-59 (264)
210 PRK13650 cbiO cobalt transport 96.9 0.0009 2E-08 53.8 3.4 27 171-197 31-57 (279)
211 PRK14265 phosphate ABC transpo 96.9 0.00095 2.1E-08 53.6 3.5 26 171-196 44-69 (274)
212 PRK14261 phosphate ABC transpo 96.9 0.00096 2.1E-08 52.8 3.5 25 171-195 30-54 (253)
213 PRK11153 metN DL-methionine tr 96.9 0.00091 2E-08 55.5 3.4 27 171-197 29-55 (343)
214 PRK10416 signal recognition pa 96.9 0.0013 2.8E-08 53.9 4.3 26 172-197 113-138 (318)
215 TIGR00602 rad24 checkpoint pro 96.9 0.0017 3.8E-08 57.8 5.3 49 149-197 81-134 (637)
216 PRK14270 phosphate ABC transpo 96.9 0.001 2.2E-08 52.6 3.6 26 171-196 28-53 (251)
217 cd03244 ABCC_MRP_domain2 Domai 96.9 0.001 2.2E-08 51.4 3.5 27 171-197 28-54 (221)
218 PRK11889 flhF flagellar biosyn 96.9 0.00094 2E-08 56.0 3.4 26 172-197 240-265 (436)
219 PRK14240 phosphate transporter 96.9 0.001 2.2E-08 52.6 3.5 26 171-196 27-52 (250)
220 PF05673 DUF815: Protein of un 96.9 0.0021 4.6E-08 50.3 5.2 54 144-197 19-76 (249)
221 PRK11022 dppD dipeptide transp 96.9 0.00096 2.1E-08 54.9 3.4 27 171-197 31-57 (326)
222 PRK10418 nikD nickel transport 96.9 0.00099 2.2E-08 52.8 3.4 27 171-197 27-53 (254)
223 PRK05564 DNA polymerase III su 96.9 0.0028 6.1E-08 51.9 6.1 59 152-210 4-66 (313)
224 PRK13546 teichoic acids export 96.9 0.00099 2.1E-08 53.2 3.4 27 171-197 48-74 (264)
225 PRK14260 phosphate ABC transpo 96.9 0.0011 2.3E-08 52.8 3.5 27 171-197 31-57 (259)
226 PRK10771 thiQ thiamine transpo 96.9 0.001 2.2E-08 52.0 3.4 27 171-197 23-49 (232)
227 PRK10253 iron-enterobactin tra 96.9 0.00094 2E-08 53.3 3.2 27 171-197 31-57 (265)
228 TIGR03740 galliderm_ABC gallid 96.9 0.0011 2.3E-08 51.5 3.5 27 171-197 24-50 (223)
229 PRK11034 clpA ATP-dependent Cl 96.9 0.0022 4.7E-08 58.4 5.9 46 152-197 186-231 (758)
230 PRK08903 DnaA regulatory inact 96.9 0.002 4.3E-08 50.1 5.0 38 160-197 28-66 (227)
231 CHL00131 ycf16 sulfate ABC tra 96.9 0.00094 2E-08 52.8 3.2 26 171-196 31-56 (252)
232 cd03254 ABCC_Glucan_exporter_l 96.9 0.0011 2.3E-08 51.7 3.4 27 171-197 27-53 (229)
233 PRK15112 antimicrobial peptide 96.9 0.001 2.2E-08 53.1 3.4 27 171-197 37-63 (267)
234 PRK14251 phosphate ABC transpo 96.9 0.0011 2.4E-08 52.4 3.5 27 171-197 28-54 (251)
235 PRK13641 cbiO cobalt transport 96.9 0.001 2.2E-08 53.8 3.4 27 171-197 31-57 (287)
236 TIGR03411 urea_trans_UrtD urea 96.9 0.0011 2.3E-08 52.1 3.4 27 171-197 26-52 (242)
237 PRK14255 phosphate ABC transpo 96.8 0.0011 2.3E-08 52.5 3.4 25 171-195 29-53 (252)
238 PRK11614 livF leucine/isoleuci 96.8 0.00099 2.1E-08 52.2 3.2 27 171-197 29-55 (237)
239 TIGR02314 ABC_MetN D-methionin 96.8 0.001 2.2E-08 55.1 3.4 27 171-197 29-55 (343)
240 PRK14949 DNA polymerase III su 96.8 0.0018 4E-08 59.3 5.2 46 152-197 16-62 (944)
241 PRK14269 phosphate ABC transpo 96.8 0.0011 2.4E-08 52.2 3.5 26 171-196 26-51 (246)
242 PTZ00361 26 proteosome regulat 96.8 0.0021 4.7E-08 54.8 5.3 45 153-197 184-241 (438)
243 cd03279 ABC_sbcCD SbcCD and ot 96.8 0.001 2.2E-08 51.3 3.1 23 172-194 27-49 (213)
244 PRK14253 phosphate ABC transpo 96.8 0.0012 2.6E-08 52.1 3.6 27 171-197 27-53 (249)
245 cd03369 ABCC_NFT1 Domain 2 of 96.8 0.0012 2.6E-08 50.6 3.5 27 171-197 32-58 (207)
246 PLN02318 phosphoribulokinase/u 96.8 0.0011 2.4E-08 58.2 3.5 27 171-197 63-89 (656)
247 COG1131 CcmA ABC-type multidru 96.8 0.0012 2.5E-08 53.6 3.5 27 171-197 29-55 (293)
248 TIGR02769 nickel_nikE nickel i 96.8 0.0011 2.5E-08 52.8 3.4 27 171-197 35-61 (265)
249 COG4555 NatA ABC-type Na+ tran 96.8 0.0011 2.4E-08 50.3 3.0 27 171-197 26-52 (245)
250 PRK13639 cbiO cobalt transport 96.8 0.0011 2.4E-08 53.2 3.3 27 171-197 26-52 (275)
251 TIGR02323 CP_lyasePhnK phospho 96.8 0.0011 2.4E-08 52.4 3.3 27 171-197 27-53 (253)
252 cd03272 ABC_SMC3_euk Eukaryoti 96.8 0.0011 2.3E-08 52.2 3.2 23 172-194 22-44 (243)
253 PRK15093 antimicrobial peptide 96.8 0.0012 2.5E-08 54.6 3.5 27 171-197 31-57 (330)
254 PRK13644 cbiO cobalt transport 96.8 0.0011 2.5E-08 53.1 3.4 27 171-197 26-52 (274)
255 cd03240 ABC_Rad50 The catalyti 96.8 0.0011 2.4E-08 50.9 3.1 20 175-194 24-43 (204)
256 cd03273 ABC_SMC2_euk Eukaryoti 96.8 0.0012 2.6E-08 52.3 3.4 24 172-195 24-47 (251)
257 PRK14268 phosphate ABC transpo 96.8 0.0012 2.6E-08 52.5 3.5 27 171-197 36-62 (258)
258 PRK13652 cbiO cobalt transport 96.8 0.0012 2.6E-08 53.1 3.4 27 171-197 28-54 (277)
259 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0013 2.9E-08 48.1 3.4 27 171-197 23-49 (157)
260 PRK03695 vitamin B12-transport 96.8 0.0011 2.4E-08 52.4 3.2 24 172-195 21-44 (248)
261 TIGR02902 spore_lonB ATP-depen 96.8 0.0028 6.1E-08 55.6 6.0 45 152-196 65-109 (531)
262 PRK14272 phosphate ABC transpo 96.8 0.0012 2.7E-08 52.1 3.5 27 171-197 28-54 (252)
263 PLN02348 phosphoribulokinase 96.8 0.0015 3.2E-08 54.7 4.0 27 171-197 47-73 (395)
264 CHL00181 cbbX CbbX; Provisiona 96.8 0.0022 4.7E-08 51.9 4.9 24 174-197 60-83 (287)
265 cd03291 ABCC_CFTR1 The CFTR su 96.8 0.0012 2.6E-08 53.2 3.4 27 171-197 61-87 (282)
266 PRK12727 flagellar biosynthesi 96.8 0.0032 7E-08 54.7 6.1 26 172-197 349-374 (559)
267 PRK13537 nodulation ABC transp 96.8 0.0012 2.5E-08 53.9 3.4 27 171-197 31-57 (306)
268 cd03283 ABC_MutS-like MutS-lik 96.8 0.0011 2.4E-08 50.7 3.0 23 174-196 26-48 (199)
269 PRK09984 phosphonate/organopho 96.8 0.0012 2.6E-08 52.5 3.4 27 171-197 28-54 (262)
270 PRK14266 phosphate ABC transpo 96.8 0.0013 2.8E-08 51.9 3.6 26 171-196 27-52 (250)
271 PRK13647 cbiO cobalt transport 96.8 0.0012 2.7E-08 52.9 3.4 27 171-197 29-55 (274)
272 TIGR00064 ftsY signal recognit 96.8 0.0022 4.7E-08 51.5 4.8 27 171-197 70-96 (272)
273 PRK05896 DNA polymerase III su 96.8 0.002 4.3E-08 56.9 4.9 46 152-197 16-62 (605)
274 PRK14275 phosphate ABC transpo 96.8 0.0013 2.7E-08 53.2 3.4 26 171-196 63-88 (286)
275 TIGR03522 GldA_ABC_ATP gliding 96.8 0.0013 2.7E-08 53.6 3.5 27 171-197 26-52 (301)
276 PRK14244 phosphate ABC transpo 96.8 0.0014 3E-08 51.9 3.6 26 171-196 29-54 (251)
277 PRK14236 phosphate transporter 96.8 0.0013 2.9E-08 52.6 3.5 26 171-196 49-74 (272)
278 PRK14964 DNA polymerase III su 96.8 0.0022 4.7E-08 55.5 5.0 44 152-195 13-57 (491)
279 PRK13646 cbiO cobalt transport 96.8 0.0013 2.7E-08 53.2 3.4 27 171-197 31-57 (286)
280 PRK13637 cbiO cobalt transport 96.8 0.0013 2.8E-08 53.2 3.4 27 171-197 31-57 (287)
281 PRK14271 phosphate ABC transpo 96.8 0.0013 2.9E-08 52.8 3.5 27 171-197 45-71 (276)
282 cd03250 ABCC_MRP_domain1 Domai 96.8 0.0014 3E-08 50.1 3.5 27 171-197 29-55 (204)
283 TIGR00968 3a0106s01 sulfate AB 96.8 0.0014 3E-08 51.4 3.5 27 171-197 24-50 (237)
284 PRK14258 phosphate ABC transpo 96.8 0.0014 3E-08 52.2 3.5 27 171-197 31-57 (261)
285 PRK10419 nikE nickel transport 96.8 0.0013 2.9E-08 52.5 3.4 27 171-197 36-62 (268)
286 PRK11144 modC molybdate transp 96.7 0.0013 2.9E-08 54.7 3.4 27 171-197 22-48 (352)
287 COG2884 FtsE Predicted ATPase 96.7 0.0027 5.8E-08 47.8 4.6 27 171-197 26-52 (223)
288 PRK13536 nodulation factor exp 96.7 0.0014 3E-08 54.3 3.5 27 171-197 65-91 (340)
289 TIGR02142 modC_ABC molybdenum 96.7 0.0014 3E-08 54.6 3.5 26 172-197 22-47 (354)
290 PRK11308 dppF dipeptide transp 96.7 0.0014 3.1E-08 53.9 3.5 27 171-197 39-65 (327)
291 PRK14958 DNA polymerase III su 96.7 0.0024 5.2E-08 55.7 5.0 46 152-197 16-62 (509)
292 PF06309 Torsin: Torsin; Inte 96.7 0.0038 8.2E-08 43.9 5.0 44 153-196 26-76 (127)
293 PRK13635 cbiO cobalt transport 96.7 0.0015 3.1E-08 52.7 3.4 27 171-197 31-57 (279)
294 PRK14252 phosphate ABC transpo 96.7 0.0015 3.3E-08 52.1 3.5 26 171-196 40-65 (265)
295 cd03217 ABC_FeS_Assembly ABC-t 96.7 0.0015 3.4E-08 49.8 3.4 26 171-196 24-49 (200)
296 PRK14960 DNA polymerase III su 96.7 0.0028 6E-08 56.5 5.3 46 151-196 14-60 (702)
297 PRK13651 cobalt transporter AT 96.7 0.0014 3E-08 53.5 3.3 27 171-197 31-57 (305)
298 PRK13631 cbiO cobalt transport 96.7 0.0015 3.2E-08 53.7 3.4 27 171-197 50-76 (320)
299 PRK13407 bchI magnesium chelat 96.7 0.0027 5.8E-08 52.4 4.9 46 150-195 6-51 (334)
300 PRK14254 phosphate ABC transpo 96.7 0.0016 3.4E-08 52.6 3.5 27 171-197 63-89 (285)
301 PRK09435 membrane ATPase/prote 96.7 0.0033 7.1E-08 51.8 5.4 36 162-197 43-80 (332)
302 PRK08099 bifunctional DNA-bind 96.7 0.0015 3.3E-08 55.2 3.5 27 171-197 217-243 (399)
303 PRK13636 cbiO cobalt transport 96.7 0.0016 3.4E-08 52.6 3.4 27 171-197 30-56 (283)
304 PRK12323 DNA polymerase III su 96.7 0.0028 6E-08 56.4 5.1 46 152-197 16-62 (700)
305 COG1245 Predicted ATPase, RNas 96.7 0.0013 2.8E-08 55.7 2.9 26 172-197 366-391 (591)
306 PF03308 ArgK: ArgK protein; 96.7 0.0042 9.2E-08 49.0 5.6 38 160-197 14-53 (266)
307 PRK13643 cbiO cobalt transport 96.7 0.0015 3.3E-08 52.8 3.4 27 171-197 30-56 (288)
308 PF00158 Sigma54_activat: Sigm 96.7 0.0027 5.8E-08 47.2 4.3 43 155-197 2-46 (168)
309 PRK09087 hypothetical protein; 96.7 0.0052 1.1E-07 47.9 6.2 26 172-197 43-68 (226)
310 PRK11000 maltose/maltodextrin 96.7 0.0016 3.4E-08 54.6 3.4 27 171-197 27-53 (369)
311 PRK10762 D-ribose transporter 96.7 0.0015 3.2E-08 57.0 3.3 27 171-197 28-54 (501)
312 cd03213 ABCG_EPDR ABCG transpo 96.7 0.0017 3.7E-08 49.3 3.4 26 171-196 33-58 (194)
313 PLN02200 adenylate kinase fami 96.7 0.0021 4.5E-08 50.4 3.9 26 172-197 42-67 (234)
314 COG4608 AppF ABC-type oligopep 96.7 0.0016 3.5E-08 51.5 3.2 27 171-197 37-63 (268)
315 PRK06645 DNA polymerase III su 96.7 0.0033 7.1E-08 54.7 5.4 46 152-197 21-67 (507)
316 PRK13409 putative ATPase RIL; 96.7 0.0015 3.3E-08 58.0 3.4 27 171-197 97-123 (590)
317 PRK14951 DNA polymerase III su 96.7 0.0029 6.2E-08 56.3 5.1 44 152-195 16-60 (618)
318 COG1125 OpuBA ABC-type proline 96.7 0.0019 4.1E-08 50.8 3.4 26 171-196 25-50 (309)
319 cd03300 ABC_PotA_N PotA is an 96.7 0.0018 4E-08 50.5 3.5 27 171-197 24-50 (232)
320 PRK14970 DNA polymerase III su 96.7 0.0036 7.7E-08 52.4 5.4 46 152-197 17-63 (367)
321 COG1134 TagH ABC-type polysacc 96.7 0.0018 3.9E-08 50.4 3.3 27 171-197 51-77 (249)
322 PRK14264 phosphate ABC transpo 96.7 0.0018 3.9E-08 52.8 3.5 27 171-197 69-95 (305)
323 PRK13633 cobalt transporter AT 96.7 0.0017 3.8E-08 52.2 3.4 27 171-197 34-60 (280)
324 PRK15439 autoinducer 2 ABC tra 96.7 0.0016 3.4E-08 56.9 3.4 27 171-197 35-61 (510)
325 PRK09473 oppD oligopeptide tra 96.7 0.0017 3.6E-08 53.6 3.3 27 171-197 40-66 (330)
326 cd03289 ABCC_CFTR2 The CFTR su 96.7 0.0019 4.1E-08 51.9 3.5 27 171-197 28-54 (275)
327 TIGR02982 heterocyst_DevA ABC 96.7 0.0019 4.1E-08 50.0 3.5 27 171-197 29-55 (220)
328 PRK15079 oligopeptide ABC tran 96.6 0.0018 3.8E-08 53.5 3.4 27 171-197 45-71 (331)
329 PRK14249 phosphate ABC transpo 96.6 0.0019 4.1E-08 51.0 3.5 27 171-197 28-54 (251)
330 PRK15064 ABC transporter ATP-b 96.6 0.0017 3.6E-08 57.0 3.4 27 171-197 25-51 (530)
331 COG3842 PotA ABC-type spermidi 96.6 0.0018 3.8E-08 53.6 3.3 25 171-195 29-53 (352)
332 PRK10938 putative molybdenum t 96.6 0.0017 3.6E-08 56.5 3.4 27 171-197 27-53 (490)
333 PRK06620 hypothetical protein; 96.6 0.0018 3.9E-08 50.1 3.2 24 174-197 45-68 (214)
334 cd01878 HflX HflX subfamily. 96.6 0.002 4.3E-08 49.1 3.4 27 171-197 39-65 (204)
335 TIGR02633 xylG D-xylose ABC tr 96.6 0.0016 3.5E-08 56.7 3.2 27 171-197 25-51 (500)
336 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0021 4.6E-08 51.3 3.6 27 171-197 67-93 (274)
337 TIGR03269 met_CoM_red_A2 methy 96.6 0.0018 3.9E-08 56.7 3.5 26 171-196 24-49 (520)
338 PRK14263 phosphate ABC transpo 96.6 0.002 4.3E-08 51.4 3.5 27 171-197 32-58 (261)
339 PRK13634 cbiO cobalt transport 96.6 0.0019 4.1E-08 52.3 3.4 27 171-197 31-57 (290)
340 PRK10070 glycine betaine trans 96.6 0.0017 3.8E-08 54.9 3.3 27 171-197 52-78 (400)
341 PRK13549 xylose transporter AT 96.6 0.0016 3.6E-08 56.8 3.2 27 171-197 286-312 (506)
342 PF13555 AAA_29: P-loop contai 96.6 0.0027 5.9E-08 38.8 3.2 21 174-194 24-44 (62)
343 PLN03046 D-glycerate 3-kinase; 96.6 0.0022 4.8E-08 54.1 3.8 26 172-197 211-236 (460)
344 COG4136 ABC-type uncharacteriz 96.6 0.0044 9.6E-08 45.0 4.7 37 171-210 26-64 (213)
345 PRK11819 putative ABC transpor 96.6 0.0018 4E-08 57.2 3.4 27 171-197 31-57 (556)
346 PRK10851 sulfate/thiosulfate t 96.6 0.002 4.3E-08 53.7 3.4 27 171-197 26-52 (353)
347 PRK13549 xylose transporter AT 96.6 0.0018 3.8E-08 56.6 3.3 27 171-197 29-55 (506)
348 PRK10636 putative ABC transpor 96.6 0.0018 3.8E-08 58.2 3.4 27 171-197 25-51 (638)
349 PRK14954 DNA polymerase III su 96.6 0.0032 7E-08 56.0 4.9 45 152-196 16-61 (620)
350 PRK15134 microcin C ABC transp 96.6 0.0018 3.9E-08 56.9 3.3 27 171-197 33-59 (529)
351 PTZ00112 origin recognition co 96.6 0.0039 8.6E-08 57.1 5.4 46 152-197 755-805 (1164)
352 KOG0991 Replication factor C, 96.6 0.0032 6.9E-08 49.0 4.2 45 151-195 26-70 (333)
353 PF01078 Mg_chelatase: Magnesi 96.6 0.0045 9.7E-08 47.3 4.9 42 152-195 3-44 (206)
354 cd03299 ABC_ModC_like Archeal 96.6 0.0022 4.8E-08 50.2 3.4 27 171-197 23-49 (235)
355 PRK12726 flagellar biosynthesi 96.6 0.0063 1.4E-07 50.9 6.2 27 171-197 204-230 (407)
356 PRK09700 D-allose transporter 96.6 0.0019 4E-08 56.5 3.3 27 171-197 287-313 (510)
357 TIGR02397 dnaX_nterm DNA polym 96.6 0.0046 9.9E-08 51.3 5.4 46 152-197 14-60 (355)
358 cd03288 ABCC_SUR2 The SUR doma 96.6 0.0023 5E-08 50.8 3.5 27 171-197 45-71 (257)
359 PRK15064 ABC transporter ATP-b 96.6 0.002 4.3E-08 56.6 3.4 27 171-197 343-369 (530)
360 PRK13642 cbiO cobalt transport 96.6 0.0022 4.8E-08 51.5 3.4 27 171-197 31-57 (277)
361 COG1127 Ttg2A ABC-type transpo 96.6 0.0023 5E-08 49.8 3.3 27 171-197 32-58 (263)
362 PRK11650 ugpC glycerol-3-phosp 96.6 0.0022 4.7E-08 53.5 3.4 27 171-197 28-54 (356)
363 PRK09700 D-allose transporter 96.6 0.0019 4.2E-08 56.4 3.2 27 171-197 29-55 (510)
364 COG4107 PhnK ABC-type phosphon 96.6 0.0013 2.7E-08 48.9 1.7 26 172-197 31-56 (258)
365 PRK08154 anaerobic benzoate ca 96.5 0.0046 1E-07 50.5 5.2 27 171-197 131-157 (309)
366 TIGR01241 FtsH_fam ATP-depende 96.5 0.0067 1.4E-07 52.9 6.5 46 152-197 55-112 (495)
367 TIGR00750 lao LAO/AO transport 96.5 0.0037 8E-08 50.9 4.6 27 171-197 32-58 (300)
368 COG3839 MalK ABC-type sugar tr 96.5 0.0023 4.9E-08 52.6 3.3 26 171-196 27-52 (338)
369 PRK14952 DNA polymerase III su 96.5 0.0043 9.3E-08 54.9 5.3 46 152-197 13-59 (584)
370 PRK11432 fbpC ferric transport 96.5 0.0023 5.1E-08 53.2 3.5 27 171-197 30-56 (351)
371 PRK10636 putative ABC transpor 96.5 0.0021 4.6E-08 57.7 3.4 27 171-197 336-362 (638)
372 PRK15439 autoinducer 2 ABC tra 96.5 0.0019 4.2E-08 56.4 3.1 27 171-197 287-313 (510)
373 PRK10261 glutathione transport 96.5 0.0022 4.7E-08 57.5 3.4 27 171-197 40-66 (623)
374 PRK11147 ABC transporter ATPas 96.5 0.002 4.4E-08 57.8 3.3 27 171-197 27-53 (635)
375 PRK14969 DNA polymerase III su 96.5 0.0038 8.2E-08 54.7 4.9 45 152-196 16-61 (527)
376 cd03280 ABC_MutS2 MutS2 homolo 96.5 0.0023 4.9E-08 48.9 3.1 22 173-194 28-49 (200)
377 TIGR02868 CydC thiol reductant 96.5 0.0022 4.7E-08 56.3 3.4 27 171-197 359-385 (529)
378 PRK13409 putative ATPase RIL; 96.5 0.0022 4.8E-08 57.0 3.5 27 171-197 363-389 (590)
379 PRK11147 ABC transporter ATPas 96.5 0.0021 4.6E-08 57.7 3.4 27 171-197 343-369 (635)
380 PRK14974 cell division protein 96.5 0.0029 6.3E-08 52.2 3.9 26 172-197 139-164 (336)
381 PRK15134 microcin C ABC transp 96.5 0.0022 4.8E-08 56.3 3.4 27 171-197 310-336 (529)
382 PRK06851 hypothetical protein; 96.5 0.14 3.1E-06 42.8 13.8 39 155-197 200-238 (367)
383 PRK11819 putative ABC transpor 96.5 0.0022 4.8E-08 56.6 3.4 27 171-197 348-374 (556)
384 TIGR03719 ABC_ABC_ChvD ATP-bin 96.5 0.0021 4.6E-08 56.7 3.2 27 171-197 346-372 (552)
385 TIGR03689 pup_AAA proteasome A 96.5 0.0036 7.9E-08 54.4 4.5 46 152-197 182-240 (512)
386 PRK08691 DNA polymerase III su 96.5 0.0044 9.5E-08 55.5 5.1 45 152-196 16-61 (709)
387 PRK10938 putative molybdenum t 96.5 0.0022 4.8E-08 55.7 3.2 26 171-196 284-309 (490)
388 PRK10982 galactose/methyl gala 96.5 0.002 4.4E-08 56.0 3.0 27 171-197 272-298 (491)
389 cd01858 NGP_1 NGP-1. Autoanti 96.5 0.0056 1.2E-07 44.7 4.9 26 172-197 101-126 (157)
390 cd01855 YqeH YqeH. YqeH is an 96.5 0.0055 1.2E-07 46.3 5.0 41 155-197 111-151 (190)
391 PRK11288 araG L-arabinose tran 96.5 0.0023 4.9E-08 55.8 3.2 27 171-197 28-54 (501)
392 PRK07003 DNA polymerase III su 96.5 0.0048 1E-07 55.8 5.2 45 152-196 16-61 (830)
393 cd03275 ABC_SMC1_euk Eukaryoti 96.5 0.0025 5.3E-08 50.4 3.2 21 174-194 23-43 (247)
394 PF02367 UPF0079: Uncharacteri 96.5 0.0063 1.4E-07 42.7 4.9 27 171-197 13-39 (123)
395 PRK10762 D-ribose transporter 96.5 0.0023 5.1E-08 55.8 3.3 27 171-197 276-302 (501)
396 COG0396 sufC Cysteine desulfur 96.5 0.0027 5.8E-08 49.1 3.2 27 171-197 28-54 (251)
397 PRK10982 galactose/methyl gala 96.5 0.0023 5E-08 55.6 3.2 26 172-197 23-48 (491)
398 PRK12377 putative replication 96.5 0.0058 1.2E-07 48.3 5.2 26 172-197 100-125 (248)
399 PRK05703 flhF flagellar biosyn 96.5 0.0043 9.2E-08 52.9 4.7 26 172-197 220-245 (424)
400 PRK11288 araG L-arabinose tran 96.5 0.0022 4.7E-08 55.9 3.0 27 171-197 277-303 (501)
401 PRK12724 flagellar biosynthesi 96.5 0.0042 9.2E-08 52.5 4.6 26 172-197 222-247 (432)
402 TIGR03719 ABC_ABC_ChvD ATP-bin 96.5 0.0025 5.5E-08 56.2 3.4 27 171-197 29-55 (552)
403 TIGR03265 PhnT2 putative 2-ami 96.5 0.0028 6E-08 52.8 3.5 27 171-197 28-54 (353)
404 TIGR03269 met_CoM_red_A2 methy 96.5 0.0026 5.6E-08 55.7 3.4 27 171-197 308-334 (520)
405 PRK14246 phosphate ABC transpo 96.5 0.0029 6.3E-08 50.3 3.4 27 171-197 34-60 (257)
406 PLN03073 ABC transporter F fam 96.5 0.0024 5.1E-08 58.1 3.2 26 171-196 201-226 (718)
407 COG1119 ModF ABC-type molybden 96.4 0.0022 4.7E-08 50.0 2.5 26 172-197 56-81 (257)
408 COG4778 PhnL ABC-type phosphon 96.4 0.0048 1E-07 45.7 4.2 27 171-197 35-61 (235)
409 PRK00454 engB GTP-binding prot 96.4 0.0036 7.8E-08 47.2 3.8 27 170-196 21-47 (196)
410 PRK09183 transposase/IS protei 96.4 0.0031 6.6E-08 50.3 3.5 26 172-197 101-126 (259)
411 PRK09112 DNA polymerase III su 96.4 0.0057 1.2E-07 50.9 5.2 50 148-197 19-69 (351)
412 PRK10261 glutathione transport 96.4 0.0027 5.8E-08 56.9 3.5 27 171-197 348-374 (623)
413 TIGR01420 pilT_fam pilus retra 96.4 0.0063 1.4E-07 50.5 5.4 27 171-197 120-146 (343)
414 TIGR03238 dnd_assoc_3 dnd syst 96.4 0.0036 7.7E-08 53.7 4.0 21 171-191 30-50 (504)
415 PF08298 AAA_PrkA: PrkA AAA do 96.4 0.0057 1.2E-07 50.4 5.0 46 152-197 61-112 (358)
416 PRK07994 DNA polymerase III su 96.4 0.0056 1.2E-07 54.7 5.3 46 152-197 16-62 (647)
417 PRK14257 phosphate ABC transpo 96.4 0.0031 6.6E-08 52.1 3.5 27 171-197 106-132 (329)
418 cd01983 Fer4_NifH The Fer4_Nif 96.4 0.0027 5.9E-08 41.7 2.6 23 175-197 1-23 (99)
419 TIGR02633 xylG D-xylose ABC tr 96.4 0.0025 5.5E-08 55.5 3.1 27 171-197 284-310 (500)
420 PRK09452 potA putrescine/sperm 96.4 0.003 6.5E-08 53.0 3.4 27 171-197 38-64 (375)
421 PF05659 RPW8: Arabidopsis bro 96.4 0.034 7.3E-07 40.3 8.3 107 5-127 8-115 (147)
422 PRK00098 GTPase RsgA; Reviewed 96.4 0.0043 9.2E-08 50.5 4.1 34 161-197 155-188 (298)
423 cd03243 ABC_MutS_homologs The 96.4 0.0028 6E-08 48.5 2.9 23 173-195 29-51 (202)
424 COG1703 ArgK Putative periplas 96.4 0.0059 1.3E-07 49.0 4.7 37 161-197 37-75 (323)
425 PRK09111 DNA polymerase III su 96.4 0.0057 1.2E-07 54.4 5.1 47 151-197 23-70 (598)
426 PLN00020 ribulose bisphosphate 96.4 0.0062 1.3E-07 50.7 4.9 27 171-197 146-172 (413)
427 COG4133 CcmA ABC-type transpor 96.4 0.0038 8.3E-08 46.8 3.4 25 171-195 26-50 (209)
428 COG1123 ATPase components of v 96.4 0.003 6.6E-08 54.8 3.3 27 171-197 315-341 (539)
429 PRK09536 btuD corrinoid ABC tr 96.4 0.0033 7.1E-08 53.2 3.4 27 171-197 27-53 (402)
430 PLN03073 ABC transporter F fam 96.4 0.003 6.6E-08 57.4 3.4 27 171-197 533-559 (718)
431 PRK05642 DNA replication initi 96.4 0.0041 8.9E-08 48.8 3.7 25 173-197 45-69 (234)
432 TIGR02880 cbbX_cfxQ probable R 96.4 0.0065 1.4E-07 49.1 4.9 23 175-197 60-82 (284)
433 cd01854 YjeQ_engC YjeQ/EngC. 96.3 0.0049 1.1E-07 49.8 4.2 34 161-197 152-185 (287)
434 TIGR01243 CDC48 AAA family ATP 96.3 0.0056 1.2E-07 55.9 5.0 46 152-197 178-236 (733)
435 COG2274 SunT ABC-type bacterio 96.3 0.0033 7.2E-08 56.8 3.4 27 171-197 497-523 (709)
436 TIGR03258 PhnT 2-aminoethylpho 96.3 0.0038 8.1E-08 52.2 3.5 27 171-197 29-55 (362)
437 TIGR00390 hslU ATP-dependent p 96.3 0.0073 1.6E-07 51.1 5.1 45 153-197 13-71 (441)
438 PRK14489 putative bifunctional 96.3 0.0086 1.9E-07 50.1 5.6 42 156-197 185-229 (366)
439 PRK11607 potG putrescine trans 96.3 0.0037 8E-08 52.5 3.4 27 171-197 43-69 (377)
440 COG4619 ABC-type uncharacteriz 96.3 0.0044 9.5E-08 45.9 3.3 26 171-196 27-52 (223)
441 PRK14723 flhF flagellar biosyn 96.3 0.0063 1.4E-07 55.2 5.0 26 172-197 184-209 (767)
442 PRK07940 DNA polymerase III su 96.3 0.0068 1.5E-07 51.2 4.9 45 152-196 5-59 (394)
443 cd01129 PulE-GspE PulE/GspE Th 96.3 0.0069 1.5E-07 48.4 4.7 42 156-197 63-104 (264)
444 TIGR01425 SRP54_euk signal rec 96.3 0.0058 1.3E-07 52.0 4.4 26 172-197 99-124 (429)
445 PF05970 PIF1: PIF1-like helic 96.3 0.0091 2E-07 50.0 5.6 39 159-197 8-46 (364)
446 COG1122 CbiO ABC-type cobalt t 96.3 0.0042 9.1E-08 48.7 3.3 26 171-196 28-53 (235)
447 COG1135 AbcC ABC-type metal io 96.3 0.0043 9.2E-08 50.1 3.3 26 171-196 30-55 (339)
448 TIGR03415 ABC_choXWV_ATP choli 96.3 0.0041 8.8E-08 52.3 3.3 27 171-197 48-74 (382)
449 COG1117 PstB ABC-type phosphat 96.3 0.0049 1.1E-07 47.3 3.4 25 171-195 31-55 (253)
450 PRK13545 tagH teichoic acids e 96.2 0.004 8.6E-08 54.3 3.3 27 171-197 48-74 (549)
451 PRK14950 DNA polymerase III su 96.2 0.0086 1.9E-07 53.3 5.5 46 152-197 16-62 (585)
452 PRK04220 2-phosphoglycerate ki 96.2 0.0078 1.7E-07 48.7 4.7 27 171-197 90-116 (301)
453 COG1474 CDC6 Cdc6-related prot 96.2 0.0085 1.9E-07 50.1 5.1 46 152-197 17-66 (366)
454 COG1419 FlhF Flagellar GTP-bin 96.2 0.014 3E-07 49.0 6.1 35 158-192 184-223 (407)
455 PRK11176 lipid transporter ATP 96.2 0.0047 1E-07 54.8 3.6 27 171-197 367-393 (582)
456 PRK05201 hslU ATP-dependent pr 96.2 0.01 2.3E-07 50.2 5.3 46 152-197 15-74 (443)
457 PF13245 AAA_19: Part of AAA d 96.2 0.0067 1.5E-07 38.8 3.3 24 172-195 9-33 (76)
458 TIGR02782 TrbB_P P-type conjug 96.1 0.0098 2.1E-07 48.4 5.0 26 172-197 131-156 (299)
459 PRK05342 clpX ATP-dependent pr 96.1 0.0098 2.1E-07 50.5 5.1 45 153-197 72-132 (412)
460 COG3840 ThiQ ABC-type thiamine 96.1 0.0058 1.2E-07 45.8 3.2 25 171-195 23-47 (231)
461 TIGR00157 ribosome small subun 96.1 0.009 2E-07 47.2 4.6 34 161-197 111-144 (245)
462 PRK06305 DNA polymerase III su 96.1 0.0098 2.1E-07 51.2 5.1 45 152-196 17-62 (451)
463 PRK08116 hypothetical protein; 96.1 0.0063 1.4E-07 48.7 3.7 24 174-197 115-138 (268)
464 PRK07764 DNA polymerase III su 96.1 0.0089 1.9E-07 55.0 5.0 46 152-197 15-61 (824)
465 KOG0744 AAA+-type ATPase [Post 96.1 0.0051 1.1E-07 50.0 3.1 28 173-201 177-204 (423)
466 TIGR00991 3a0901s02IAP34 GTP-b 96.1 0.012 2.6E-07 47.9 5.2 40 158-197 21-62 (313)
467 TIGR03797 NHPM_micro_ABC2 NHPM 96.1 0.0051 1.1E-07 55.8 3.5 27 171-197 477-503 (686)
468 KOG0781 Signal recognition par 96.1 0.013 2.9E-07 49.9 5.6 33 171-206 376-409 (587)
469 PRK13477 bifunctional pantoate 96.1 0.0058 1.3E-07 53.2 3.6 26 172-197 283-308 (512)
470 COG4240 Predicted kinase [Gene 96.1 0.0095 2.1E-07 46.1 4.3 27 171-197 48-74 (300)
471 KOG0062 ATPase component of AB 96.1 0.0038 8.3E-08 53.5 2.4 24 172-195 105-128 (582)
472 PRK07471 DNA polymerase III su 96.1 0.012 2.5E-07 49.3 5.2 45 151-195 18-63 (365)
473 PRK05537 bifunctional sulfate 96.1 0.013 2.9E-07 51.8 5.7 43 155-197 372-416 (568)
474 cd03281 ABC_MSH5_euk MutS5 hom 96.1 0.0058 1.3E-07 47.2 3.1 23 173-195 29-51 (213)
475 COG1223 Predicted ATPase (AAA+ 96.1 0.011 2.3E-07 46.8 4.5 46 152-197 121-175 (368)
476 PRK07952 DNA replication prote 96.0 0.018 4E-07 45.4 5.9 38 160-197 84-123 (244)
477 TIGR02788 VirB11 P-type DNA tr 96.0 0.01 2.2E-07 48.5 4.6 26 172-197 143-168 (308)
478 PRK06526 transposase; Provisio 96.0 0.0057 1.2E-07 48.6 3.1 26 172-197 97-122 (254)
479 PRK14953 DNA polymerase III su 96.0 0.012 2.6E-07 51.1 5.2 45 152-196 16-61 (486)
480 COG4618 ArpD ABC-type protease 96.0 0.0058 1.3E-07 52.4 3.2 25 171-195 360-384 (580)
481 PRK13765 ATP-dependent proteas 96.0 0.0092 2E-07 53.4 4.6 55 152-210 31-85 (637)
482 PRK12723 flagellar biosynthesi 96.0 0.0078 1.7E-07 50.6 3.9 26 172-197 173-198 (388)
483 COG0444 DppD ABC-type dipeptid 96.0 0.0074 1.6E-07 48.9 3.5 27 171-197 29-55 (316)
484 PRK10865 protein disaggregatio 96.0 0.012 2.5E-07 54.7 5.2 45 153-197 569-622 (857)
485 TIGR00958 3a01208 Conjugate Tr 96.0 0.0065 1.4E-07 55.3 3.6 27 171-197 505-531 (711)
486 PRK10522 multidrug transporter 96.0 0.0064 1.4E-07 53.7 3.4 27 171-197 347-373 (547)
487 COG1132 MdlB ABC-type multidru 96.0 0.0065 1.4E-07 53.8 3.4 27 171-197 353-379 (567)
488 KOG0738 AAA+-type ATPase [Post 96.0 0.013 2.8E-07 48.8 4.8 25 173-197 245-269 (491)
489 PRK06647 DNA polymerase III su 96.0 0.013 2.7E-07 51.9 5.1 46 152-197 16-62 (563)
490 COG0542 clpA ATP-binding subun 96.0 0.2 4.4E-06 45.7 12.6 45 152-196 491-544 (786)
491 COG4598 HisP ABC-type histidin 96.0 0.0081 1.8E-07 45.0 3.3 27 169-195 28-54 (256)
492 PRK06835 DNA replication prote 96.0 0.019 4E-07 47.4 5.8 38 160-197 168-207 (329)
493 TIGR03796 NHPM_micro_ABC1 NHPM 95.9 0.0065 1.4E-07 55.3 3.4 27 171-197 503-529 (710)
494 PRK00771 signal recognition pa 95.9 0.014 3E-07 49.9 5.1 26 172-197 94-119 (437)
495 TIGR01193 bacteriocin_ABC ABC- 95.9 0.0068 1.5E-07 55.1 3.5 27 171-197 498-524 (708)
496 TIGR02524 dot_icm_DotB Dot/Icm 95.9 0.012 2.5E-07 49.2 4.6 33 164-197 126-158 (358)
497 COG0411 LivG ABC-type branched 95.9 0.0017 3.7E-08 50.5 -0.3 26 171-196 28-53 (250)
498 cd01853 Toc34_like Toc34-like 95.9 0.015 3.1E-07 46.1 4.9 37 161-197 17-55 (249)
499 PRK12289 GTPase RsgA; Reviewed 95.9 0.009 2E-07 49.7 3.8 34 161-197 163-196 (352)
500 PRK11174 cysteine/glutathione 95.9 0.0068 1.5E-07 53.9 3.3 27 171-197 374-400 (588)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.90 E-value=8.1e-23 Score=184.25 Aligned_cols=190 Identities=31% Similarity=0.503 Sum_probs=144.7
Q ss_pred hHhHHHHHhhhccchhhchhHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHHHHHHHHHhHhhH
Q 041747 10 ILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDVISRKGE 89 (211)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~v~~L~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~v~~~~~~~ed~ld~~~ 89 (211)
.++++++++.++...+.+.++++..|++++..|+.++.|+++. +.. ......|.+.++++.|++||+++.+.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-------~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK-------RDD-LERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-------cch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999995433 333 47788999999999999999999986
Q ss_pred HHHhc----------------hhcCCcccCCccchhhhHHHHHHHHHHHHHHHHcccccccccccc-cCCCCcccCCccc
Q 041747 90 QEVQK----------------KCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFENLQVTY-KLPRPTVDGMVME 152 (211)
Q Consensus 90 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 152 (211)
.+... -|....|..+...-+.+++++..+.+.++.+..+.. |. .+.. ..|+......+..
T Consensus 80 v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~-~~--~~~~~~~~~~~~e~~~~~ 156 (889)
T KOG4658|consen 80 VEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGV-FE--VVGESLDPREKVETRPIQ 156 (889)
T ss_pred HHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccc-ee--cccccccchhhcccCCCC
Confidence 54321 233345555555666777878777777777665543 33 2221 1122222222211
Q ss_pred c-c-cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhh-cCCCccEEEEeC
Q 041747 153 E-T-VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLD-INHHFDLVIWVA 211 (211)
Q Consensus 153 ~-~-~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~-v~~~F~~~~wv~ 211 (211)
. . ||.+..++++++.|.+++..++||+||||+||||||+.|||+. . ++.+||.+|||+
T Consensus 157 ~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~-~~v~~~Fd~~iWV~ 217 (889)
T KOG4658|consen 157 SESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKF-DEVGNHFDGVIWVV 217 (889)
T ss_pred ccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhccc-chhcccCceEEEEE
Confidence 1 2 9999999999999999888999999999999999999999998 6 999999999995
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.18 E-value=9.9e-11 Score=110.34 Aligned_cols=56 Identities=23% Similarity=0.589 Sum_probs=49.3
Q ss_pred ccccchHHHHHHHHHhhc--cCCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747 152 EETVGFDSMLDEVWGHIA--DYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV 210 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv 210 (211)
+.++|++..++++..+|. .+++++|+||||||+||||||+.+|+.. ..+|+..+|+
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv 241 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFI 241 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEe
Confidence 558999999999998874 3679999999999999999999999965 6789988876
No 3
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.32 E-value=5.8e-07 Score=74.55 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=34.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEeC
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA 211 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv~ 211 (211)
......+|+|++|+|||||++.||+.. ... +|++++||+
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I-~~n-hFDv~~~Vv 205 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSI-TTN-HPEVHLIVL 205 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHH-Hhh-cCCeEEEEE
Confidence 467789999999999999999999987 433 899999984
No 4
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=8.4e-05 Score=65.61 Aligned_cols=47 Identities=26% Similarity=0.449 Sum_probs=41.0
Q ss_pred cccccchHHHHHHHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 151 MEETVGFDSMLDEVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.+|+++-++.+++++-- -+.+++..+|++|+|||++++.|....
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL 462 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL 462 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence 45688999999999998742 478999999999999999999998865
No 5
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.09 E-value=6.8e-06 Score=58.54 Aligned_cols=42 Identities=26% Similarity=0.402 Sum_probs=36.5
Q ss_pred chHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 156 GFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 156 g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
|++..+..+...+..+....+-|+|+.|+|||||++.+++..
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 667788888888876667889999999999999999999875
No 6
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00022 Score=63.07 Aligned_cols=51 Identities=25% Similarity=0.428 Sum_probs=42.4
Q ss_pred cccccchHHHHHHHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCc
Q 041747 151 MEETVGFDSMLDEVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHF 204 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F 204 (211)
..+++|.+..++.|++.|-- -+..++..||++|+|||+|++.|-... ..+|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf 378 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF 378 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE
Confidence 34578999999999998842 356799999999999999999998865 5555
No 7
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.05 E-value=1.9e-05 Score=66.96 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=46.1
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEeC
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA 211 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv~ 211 (211)
.++++.+...+.+...|. ..+.|-++|++|+||||||+.+.+.. .....|+.+.||+
T Consensus 175 ~d~~i~e~~le~l~~~L~--~~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLT--IKKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEe
Confidence 346778889999999987 56678889999999999999998876 4445677777764
No 8
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.97 E-value=2e-05 Score=60.77 Aligned_cols=47 Identities=26% Similarity=0.375 Sum_probs=33.6
Q ss_pred cccccchHHHHHHHHHhhc-----cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 151 MEETVGFDSMLDEVWGHIA-----DYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++++|.+.-++.+.-++. .+.+.-+=.||++|+||||||+.|-++.
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 4568898887777655543 2457788899999999999999999876
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.91 E-value=3.1e-05 Score=65.23 Aligned_cols=46 Identities=26% Similarity=0.284 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.++||+++.++|...|.+ .....+-|+|++|+||||+++.++++.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999853 344567899999999999999999876
No 10
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.88 E-value=2.2e-05 Score=64.78 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=39.9
Q ss_pred cccchHHHHHHHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++|.++.+++++.++.. ...+++.++|+.|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999864 346899999999999999999998765
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.87 E-value=2.1e-05 Score=63.95 Aligned_cols=46 Identities=28% Similarity=0.381 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++..++.|..++.. .....+-++|++|+||||||+.+.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999888862 345668899999999999999998865
No 12
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.86 E-value=1.9e-05 Score=65.95 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEeC
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA 211 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv~ 211 (211)
.....++|+|++|+|||||++.|++.. . +.+|+.++||+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~Vl 204 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVL 204 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEE
Confidence 467899999999999999999999986 4 33799999974
No 13
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.83 E-value=3.1e-05 Score=64.56 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.++|++.+.+.|..+|.+ .....+-|+|++|+|||++++.+++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999864 345678999999999999999999864
No 14
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.80 E-value=0.00046 Score=63.21 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++|.+..++.+..++.. .+..++.++|++|+||||||+.|.+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 477988888888886642 244589999999999999999998865
No 15
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.80 E-value=0.00044 Score=63.19 Aligned_cols=46 Identities=26% Similarity=0.389 Sum_probs=38.9
Q ss_pred ccccchHHHHHHHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.++.+|.. ....++.++|++|+|||||++.+....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999988752 356789999999999999999998754
No 16
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.75 E-value=4.3e-05 Score=64.93 Aligned_cols=46 Identities=30% Similarity=0.400 Sum_probs=36.8
Q ss_pred ccccchHHHHHH---HHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDE---VWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~---l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++++|.+..+.. +..++.......+-++|++|+||||||+.+.+..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457787766555 7777766677788899999999999999998865
No 17
>PTZ00202 tuzin; Provisional
Probab=97.74 E-value=6.4e-05 Score=63.48 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=40.1
Q ss_pred ccccccchHHHHHHHHHhhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 150 VMEETVGFDSMLDEVWGHIAD---YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 150 ~~~~~~g~~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.+.++||+.+...|...|.+ ...+++.|.|++|+|||||++.+....
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 346789999999999988854 235699999999999999999998754
No 18
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.66 E-value=0.0024 Score=57.06 Aligned_cols=46 Identities=30% Similarity=0.335 Sum_probs=39.3
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++++|....+..+...+.......+.|+|++|+||||||+.+++..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4578988888888888766667789999999999999999998765
No 19
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.65 E-value=0.0002 Score=62.39 Aligned_cols=27 Identities=41% Similarity=0.553 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....|+|+|++|+|||||.+.|.+..
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 577899999999999999999997653
No 20
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.65 E-value=0.00012 Score=56.86 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=34.9
Q ss_pred chHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 156 GFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 156 g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.+..++.+..++.......+-++|+.|+||||||+.+++..
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345677778777665677889999999999999999999875
No 21
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.65 E-value=7.5e-05 Score=61.51 Aligned_cols=46 Identities=28% Similarity=0.392 Sum_probs=38.3
Q ss_pred ccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++..++.+..++.. .....+-++|++|+||||||+.+.+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 5689999999888877752 345678899999999999999998875
No 22
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.60 E-value=0.00011 Score=57.49 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+..+|+|.|++|+|||||++.+.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899999999999999999998765
No 23
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.57 E-value=0.00013 Score=60.06 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=39.1
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|..++..+....+-++|+.|+||||||+.+.+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5578999999999998876665677899999999999999987754
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.55 E-value=0.00017 Score=57.43 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+..++.|+|++|+|||||++.+++..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 456689999999999999999999876
No 25
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.00016 Score=57.44 Aligned_cols=47 Identities=26% Similarity=0.394 Sum_probs=39.8
Q ss_pred cccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 151 MEETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+++|.+..+++|-=++.. ..+.-+-++|++|.||||||..|-++.
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 35689998888888776653 578999999999999999999999876
No 26
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=97.53 E-value=0.00018 Score=57.62 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=77.0
Q ss_pred hHhhHhHHHHHhhhccchhhchhHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHHHHHHHHHhH
Q 041747 7 VLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDVISR 86 (211)
Q Consensus 7 v~~~~~~l~~~~~~~~~~~~~~~~~v~~L~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~v~~~~~~~ed~ld 86 (211)
|.-++++|-++..+....+.-++++++-++.+++.|+.|++.+ +++...+. ...+.+..++.+.||++|-++|
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh-~~~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKH-DTNEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhh-hhhhhHHHHHHHHHhheeeeee
Confidence 3347888999999999999999999999999999999999886 44444444 3499999999999999999999
Q ss_pred hhHHHH-hchhcCCcccCCccchhhhHHHHHHHHHHHH
Q 041747 87 KGEQEV-QKKCLGSCCIYNCYSGYKIGKKVINKIRDVK 123 (211)
Q Consensus 87 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~ 123 (211)
.+.... ..||+..|. +.+..++.-+.++++
T Consensus 371 aCi~k~~P~Wcl~~WL-------~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 371 ACISKSVPHWCLERWL-------LDIIEEITCIKAKIQ 401 (402)
T ss_pred hhhcCCCcHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 864322 224543222 456666666665554
No 27
>PRK04195 replication factor C large subunit; Provisional
Probab=97.52 E-value=0.0001 Score=63.82 Aligned_cols=47 Identities=30% Similarity=0.532 Sum_probs=39.9
Q ss_pred cccccchHHHHHHHHHhhccC----CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 151 MEETVGFDSMLDEVWGHIADY----RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+++|.+..++.|..|+... ..+.+-|+|++|+||||||+.+.++.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 356899999999999998641 26789999999999999999998865
No 28
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.51 E-value=0.00015 Score=58.45 Aligned_cols=26 Identities=31% Similarity=0.248 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+.+.+|||.|.+|+||||||+.+-.-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999877543
No 29
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.49 E-value=9.6e-05 Score=58.34 Aligned_cols=27 Identities=41% Similarity=0.581 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|++|+|||||.+.+++-.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999998854
No 30
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.49 E-value=0.00015 Score=63.18 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=39.5
Q ss_pred cccchHHHHHHHHHhhc------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIA------DYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++|.+..++.++..|. +...+++.++|+.|+||||||+.|.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 47899999999999983 3567899999999999999999998754
No 31
>PRK06696 uridine kinase; Validated
Probab=97.48 E-value=0.00023 Score=55.38 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+..+|+|.|.+|+||||||+.|....
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999987653
No 32
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00014 Score=60.24 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=28.8
Q ss_pred HhhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCcc
Q 041747 166 GHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFD 205 (211)
Q Consensus 166 ~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~ 205 (211)
.++....+.-.=.||++|+||||||+.|-... ..+|.
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~ 77 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE 77 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE
Confidence 33445678888899999999999999998855 44554
No 33
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.43 E-value=0.00025 Score=57.88 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=39.9
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.+..++.......+-++|..|+||||+++.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5578999999999999877666678999999999999999998764
No 34
>PLN03025 replication factor C subunit; Provisional
Probab=97.43 E-value=0.00026 Score=58.10 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..+..|..++...+..-+-++|+.|+||||+|+.+.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 5578988888888887776666666799999999999999987753
No 35
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.41 E-value=0.00025 Score=64.06 Aligned_cols=46 Identities=41% Similarity=0.486 Sum_probs=35.5
Q ss_pred ccccchHHHHH---HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLD---EVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++++|.+..+. .+...+..+....+-++|++|+||||||+.+.+..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45778776663 45555666667778899999999999999998865
No 36
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.39 E-value=0.00016 Score=45.36 Aligned_cols=22 Identities=45% Similarity=0.673 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 041747 175 IIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+|.|.|..|+||||+++.+-+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 37
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.39 E-value=0.00016 Score=51.57 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|.+|+|||||++.+....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 56799999999999999999998765
No 38
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.34 E-value=0.00033 Score=58.56 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.|.+..+++|...+.- ...+-+-++|++|+||||||+.+.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999998888877631 234568899999999999999999865
No 39
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.00036 Score=60.65 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..+..|..++..+.. ..+-++|+.|+||||+|+.+.+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999988876554 566899999999999999988765
No 40
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.33 E-value=0.00072 Score=54.40 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=28.7
Q ss_pred HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 163 EVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 163 ~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.-.++.+.+..++.|+|.+|+|||||+..+.+..
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33344445789999999999999999999998875
No 41
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.32 E-value=0.00021 Score=54.88 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 42
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.32 E-value=0.00021 Score=55.18 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998754
No 43
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.31 E-value=0.00039 Score=56.85 Aligned_cols=47 Identities=21% Similarity=0.155 Sum_probs=39.3
Q ss_pred cccccchHHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 151 MEETVGFDSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+++|.+...+.+..++.... ..++-++|+.|+||||||+.+++..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3567899999999999987654 4577779999999999999998764
No 44
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00022 Score=56.15 Aligned_cols=26 Identities=38% Similarity=0.506 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|++|.|||||++.+.+-
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999999999883
No 45
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.30 E-value=0.00024 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
...+++|+|++|+|||||.+.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 67899999999999999999996
No 46
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.30 E-value=0.00034 Score=52.21 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=18.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+.+-|+|.+|+|||||++.++...
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567999999999999999999998876
No 47
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.28 E-value=0.00024 Score=54.80 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 48
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.27 E-value=0.00026 Score=53.06 Aligned_cols=27 Identities=37% Similarity=0.583 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|++|.|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 477899999999999999999998754
No 49
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.26 E-value=0.00039 Score=64.06 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=38.5
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++.+.+.++..|......-+-++|++|+|||++|+.+....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999976444455699999999999999987654
No 50
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.00026 Score=54.78 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 51
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.00028 Score=55.22 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 52
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.0003 Score=52.66 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+....
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 53
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.24 E-value=0.00046 Score=56.79 Aligned_cols=46 Identities=30% Similarity=0.372 Sum_probs=32.7
Q ss_pred CccccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 149 MVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 149 ~~~~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++.++|....+ -..++.+.+..+-.||++|+||||||+.|-+..
T Consensus 141 vGQ~hlv~q~gll---rs~ieq~~ipSmIlWGppG~GKTtlArlia~ts 186 (554)
T KOG2028|consen 141 VGQSHLVGQDGLL---RSLIEQNRIPSMILWGPPGTGKTTLARLIASTS 186 (554)
T ss_pred cchhhhcCcchHH---HHHHHcCCCCceEEecCCCCchHHHHHHHHhhc
Confidence 3444455543332 233445678888999999999999999998865
No 54
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.00029 Score=54.21 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998753
No 55
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.23 E-value=0.00038 Score=53.50 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=25.7
Q ss_pred hhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 167 HIADYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 167 ~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+.+.++++|+++|..|+|||||.+.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 345568999999999999999999998654
No 56
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.23 E-value=0.0003 Score=54.39 Aligned_cols=27 Identities=48% Similarity=0.783 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 57
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.00031 Score=53.99 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.+.+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 58
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.23 E-value=0.00031 Score=54.71 Aligned_cols=27 Identities=41% Similarity=0.432 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999999998754
No 59
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.22 E-value=0.00031 Score=54.10 Aligned_cols=27 Identities=41% Similarity=0.490 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998753
No 60
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.00031 Score=54.19 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.. .+++|+|.+|.|||||++.+.+-.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 46 999999999999999999998753
No 61
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.21 E-value=0.00035 Score=53.48 Aligned_cols=27 Identities=33% Similarity=0.462 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....|+.|+|++|+|||||.+.|+.=+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 478899999999999999999997643
No 62
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.21 E-value=0.00032 Score=53.71 Aligned_cols=27 Identities=48% Similarity=0.612 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999999998753
No 63
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.00032 Score=55.04 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 64
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.20 E-value=0.0003 Score=54.14 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 367899999999999999999998754
No 65
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.20 E-value=0.00093 Score=47.56 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|.+.|.-|.|||||++.+....
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56799999999999999999998865
No 66
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.20 E-value=0.00058 Score=50.18 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=30.2
Q ss_pred HHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 159 SMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 159 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...++|..+|. + +++.++|..|+|||||++.+..+.
T Consensus 24 ~g~~~l~~~l~--~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLK--G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHT--T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhc--C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 35677777775 4 899999999999999999998863
No 67
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.20 E-value=0.00034 Score=54.16 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+..-.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 68
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.20 E-value=0.00035 Score=54.13 Aligned_cols=27 Identities=44% Similarity=0.630 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998753
No 69
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.20 E-value=0.00036 Score=54.28 Aligned_cols=27 Identities=41% Similarity=0.513 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 367899999999999999999998753
No 70
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.19 E-value=0.00034 Score=54.97 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998753
No 71
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.19 E-value=0.00036 Score=54.03 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+...+++|+|++|+|||||...+..=
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 57889999999999999999999764
No 72
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.00068 Score=58.50 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=37.5
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++++|.+.....|...+..+.+ ..+-++|+.|+||||+|+.+.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688998888888887776655 457889999999999999997653
No 73
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.19 E-value=0.00061 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...-+-++|++|+||||+|+.+.+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHH
Confidence 3456778999999999999999765
No 74
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00035 Score=54.79 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998753
No 75
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.18 E-value=0.00058 Score=57.62 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=36.8
Q ss_pred ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++.|.+..++++...+.. ..++-|-++|++|+|||+||+.+.+..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 4577999988888876531 245668899999999999999998865
No 76
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.17 E-value=0.00039 Score=52.86 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 367799999999999999999998864
No 77
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.17 E-value=0.00057 Score=63.07 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=39.3
Q ss_pred cccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 151 MEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++++|++.++..++..|......-+-++|.+|+||||||+.+....
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999998876555556699999999999999988754
No 78
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.16 E-value=0.00038 Score=54.99 Aligned_cols=26 Identities=38% Similarity=0.735 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|.+|+|||||++.+.+..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999998764
No 79
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.16 E-value=0.00039 Score=53.52 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 80
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00064 Score=52.85 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....++||+|..|+|||||++.+-.-.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 478899999999999999999997643
No 81
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.15 E-value=0.0004 Score=54.40 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 477899999999999999999998754
No 82
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.15 E-value=0.00041 Score=53.11 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+....
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998764
No 83
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.15 E-value=0.00048 Score=47.08 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
....++|+|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 56889999999999999999975
No 84
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.15 E-value=0.00087 Score=55.32 Aligned_cols=45 Identities=24% Similarity=0.263 Sum_probs=38.3
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..++|.+..+..|+-.+.++...-+.|.|.+|+|||||++.+.+-
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 557899999988888787777777779999999999999999643
No 85
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.15 E-value=0.00039 Score=54.03 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 86
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.00041 Score=55.09 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 87
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.14 E-value=0.00049 Score=52.48 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+..+|.|+|++|+|||||++.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999998754
No 88
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.14 E-value=0.00041 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|.|||||++.+.+-.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56899999999999999999998754
No 89
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.14 E-value=0.00043 Score=53.87 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999998754
No 90
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.00042 Score=54.14 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 91
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.13 E-value=0.00069 Score=61.72 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++++|++.+...++..|......-+-++|++|+|||+||+.+....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999998876555556699999999999999998754
No 92
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00045 Score=53.93 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|++|+|||||.+.|-.=
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999753
No 93
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.13 E-value=0.00044 Score=53.56 Aligned_cols=27 Identities=41% Similarity=0.564 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998753
No 94
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.13 E-value=0.00045 Score=53.14 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.+.+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 95
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00045 Score=53.94 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 96
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.11 E-value=0.00043 Score=54.15 Aligned_cols=27 Identities=37% Similarity=0.505 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 367899999999999999999998753
No 97
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.11 E-value=0.00049 Score=52.50 Aligned_cols=27 Identities=37% Similarity=0.470 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 478899999999999999999998764
No 98
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.11 E-value=0.00047 Score=53.77 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|.+|.|||||++.+.+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999998753
No 99
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.10 E-value=0.00047 Score=54.16 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|++|.|||||++.+.+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999999875
No 100
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.10 E-value=0.0005 Score=52.73 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 367899999999999999999998753
No 101
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.001 Score=55.65 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=38.4
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.+...+..+++ ..+-++|+.|+||||||+.+....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 5678999999999988876554 567899999999999999987654
No 102
>PRK08727 hypothetical protein; Validated
Probab=97.09 E-value=0.0015 Score=51.15 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=30.8
Q ss_pred cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 155 VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+|-.+....+..........-+.|+|..|+|||.|++.+.+..
T Consensus 23 ~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 23 AAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA 65 (233)
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4445555544444433344679999999999999999998865
No 103
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.09 E-value=0.00049 Score=54.72 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 104
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.09 E-value=0.00051 Score=52.81 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.+.+-.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 105
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.09 E-value=0.00053 Score=52.23 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998864
No 106
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00051 Score=53.99 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+..-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 107
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.00041 Score=53.33 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 175 IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++|+|++|.|||||++.+.+-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 99999999999999999998753
No 108
>PRK10908 cell division protein FtsE; Provisional
Probab=97.08 E-value=0.00053 Score=53.16 Aligned_cols=27 Identities=33% Similarity=0.299 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.|..-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999998754
No 109
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.08 E-value=0.0012 Score=51.89 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 158 DSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 158 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+..+-.+........+-|+|+.|+|||+|++.+.+..
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3344455454444556789999999999999999998864
No 110
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.00053 Score=53.88 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998764
No 111
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.07 E-value=0.00055 Score=52.53 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999998854
No 112
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.07 E-value=0.00083 Score=54.16 Aligned_cols=26 Identities=50% Similarity=0.709 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+..+|.++|++|+||||++..+....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999987765
No 113
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.06 E-value=0.00055 Score=54.25 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999998754
No 114
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.06 E-value=0.0053 Score=53.01 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+--..|++||++|+||+||.+.+|.+.
T Consensus 414 d~~srvAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 414 DLDSRVALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred CcccceeEecCCCCchhhhHHHHhhcc
Confidence 345689999999999999999999876
No 115
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.00055 Score=54.17 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.+.+-
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999999863
No 116
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.05 E-value=0.00059 Score=52.65 Aligned_cols=27 Identities=44% Similarity=0.598 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++++|.+|+|||||.+.|.+-.
T Consensus 27 ~~Geiv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 27 ERGEIVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999865
No 117
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.05 E-value=0.00066 Score=50.57 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467899999999999999999998754
No 118
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.05 E-value=0.00058 Score=53.94 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999998754
No 119
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.04 E-value=0.0006 Score=52.93 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 120
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.04 E-value=0.0006 Score=52.65 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998753
No 121
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.0006 Score=53.59 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 122
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.03 E-value=0.00061 Score=53.47 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 123
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.03 E-value=0.0011 Score=57.00 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=39.2
Q ss_pred cccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 151 MEETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
-.+++|.+..+..|..++..+++. .+-++|+.|+||||+|+.+.+..
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999998876654 57899999999999999997654
No 124
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.00068 Score=50.42 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 477899999999999999999998864
No 125
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.03 E-value=0.00062 Score=53.32 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 478899999999999999999998753
No 126
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.02 E-value=0.00087 Score=61.98 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=38.5
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++.++..++..|......-+-++|++|+||||||+.+-...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999998876555556699999999999999987754
No 127
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.02 E-value=0.00066 Score=49.08 Aligned_cols=27 Identities=41% Similarity=0.578 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999998754
No 128
>PRK10536 hypothetical protein; Provisional
Probab=97.02 E-value=0.0056 Score=48.46 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=35.5
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+.++......++.+|.+ ..++.+.|++|+|||+||..+.-+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456777778888888874 4599999999999999999987753
No 129
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.02 E-value=0.00069 Score=50.83 Aligned_cols=27 Identities=41% Similarity=0.640 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 377899999999999999999998854
No 130
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.00064 Score=53.39 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999998754
No 131
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.01 E-value=0.00065 Score=53.63 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998753
No 132
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00065 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
....+++|+|.+|.|||||++.+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4678999999999999999999975
No 133
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.01 E-value=0.00067 Score=52.47 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 478899999999999999999998754
No 134
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.01 E-value=0.00066 Score=53.54 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 478899999999999999999998653
No 135
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.01 E-value=0.00072 Score=50.08 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998864
No 136
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.01 E-value=0.00067 Score=51.81 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||.+.+.+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999998754
No 137
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.00 E-value=0.00065 Score=53.24 Aligned_cols=27 Identities=41% Similarity=0.597 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|..-.
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998753
No 138
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.00 E-value=0.0007 Score=49.99 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999998754
No 139
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.00 E-value=0.00065 Score=52.35 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+....
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 478899999999999999999998764
No 140
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00065 Score=51.51 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.+...
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999874
No 141
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00071 Score=50.40 Aligned_cols=27 Identities=41% Similarity=0.571 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 142
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00066 Score=54.31 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 143
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0012 Score=57.92 Aligned_cols=46 Identities=26% Similarity=0.316 Sum_probs=38.0
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..+..|...+..+.+ ..+-++|+.|+||||||+.+.+..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999876554 446789999999999999987643
No 144
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.00 E-value=0.00067 Score=53.88 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999998753
No 145
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.0007 Score=52.04 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 146
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.00 E-value=0.00072 Score=53.75 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|..-.
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999998643
No 147
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.00062 Score=54.33 Aligned_cols=27 Identities=41% Similarity=0.570 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999998754
No 148
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.00067 Score=53.72 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998754
No 149
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.0014 Score=55.54 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=38.1
Q ss_pred cccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 151 MEETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
-.+++|.+..++.|.+++.++.+. -+-++|+.|+||||+|..+-+..
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 356889999999999988765554 47789999999999999876543
No 150
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.99 E-value=0.00068 Score=52.81 Aligned_cols=27 Identities=41% Similarity=0.533 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 377899999999999999999998754
No 151
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.00059 Score=52.17 Aligned_cols=27 Identities=33% Similarity=0.607 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....|.+|+|++|.|||||.+.+..+.
T Consensus 25 ~pGev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 25 RPGEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred cCCcEEEEECCCCccHHHHHHHhhCcc
Confidence 467899999999999999999999876
No 152
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.99 E-value=0.00075 Score=50.50 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999998764
No 153
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.99 E-value=0.0007 Score=50.86 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 154
>PLN02796 D-glycerate 3-kinase
Probab=96.99 E-value=0.00078 Score=55.45 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+-+|+|.|..|+|||||++.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 56789999999999999999998765
No 155
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.98 E-value=0.00072 Score=52.97 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 477899999999999999999998764
No 156
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.98 E-value=0.00068 Score=54.55 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998753
No 157
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.98 E-value=0.00072 Score=53.67 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999998864
No 158
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.00074 Score=52.73 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+..-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999998754
No 159
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.97 E-value=0.00069 Score=53.79 Aligned_cols=27 Identities=41% Similarity=0.764 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999999864
No 160
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.97 E-value=0.0014 Score=54.33 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=39.9
Q ss_pred cccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 151 MEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
-+.++|.+..+.-|+..+.++++.=+-|.|..|+||||+|+.+++-.
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 36689999988888888887777766699999999999999997754
No 161
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.00072 Score=53.44 Aligned_cols=26 Identities=42% Similarity=0.677 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.+.+-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 36789999999999999999999753
No 162
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.00072 Score=54.19 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998753
No 163
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.00079 Score=53.79 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.|.+-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999998754
No 164
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.00071 Score=51.75 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 467899999999999999999998764
No 165
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.96 E-value=0.00073 Score=54.05 Aligned_cols=27 Identities=37% Similarity=0.647 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 166
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.96 E-value=0.00066 Score=51.79 Aligned_cols=20 Identities=20% Similarity=0.584 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 041747 175 IIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~i~ 194 (211)
+++|+|++|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999987
No 167
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.0007 Score=54.21 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999998753
No 168
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.00079 Score=53.26 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467899999999999999999998753
No 169
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.00077 Score=53.32 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999998754
No 170
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.95 E-value=0.00065 Score=46.51 Aligned_cols=22 Identities=45% Similarity=0.768 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041747 176 IGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 176 i~I~G~~GiGKTTLa~~i~~~~ 197 (211)
|-|+|.+|+|||+||+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999976543
No 171
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.00079 Score=52.64 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 477899999999999999999998754
No 172
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.95 E-value=0.00077 Score=53.33 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 173
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.95 E-value=0.0016 Score=49.13 Aligned_cols=36 Identities=28% Similarity=0.121 Sum_probs=26.7
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...++.+.. .....+.|+|..|+|||||++.+.+..
T Consensus 14 ~~~~l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 14 QAAYLWLAV-EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHH-hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 333444333 256799999999999999999987643
No 174
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.95 E-value=0.00078 Score=52.39 Aligned_cols=27 Identities=44% Similarity=0.646 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|.+|+|||||++.+.+-.
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 175
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00075 Score=53.64 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 176
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.00078 Score=53.58 Aligned_cols=27 Identities=30% Similarity=0.616 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 477899999999999999999998653
No 177
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.95 E-value=0.0017 Score=55.76 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=37.3
Q ss_pred cccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|++..++.+...+. ...-+-+.|++|+|||+||+.+....
T Consensus 21 ~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHh
Confidence 46899999999998887 56678899999999999999998754
No 178
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.00083 Score=53.80 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 577899999999999999999998753
No 179
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00079 Score=53.87 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.+..-
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 47789999999999999999999875
No 180
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.94 E-value=0.0013 Score=56.78 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...||+++|++|+||||++.++....
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 45799999999999999999998765
No 181
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.94 E-value=0.00084 Score=51.88 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|++-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999999754
No 182
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.00086 Score=53.59 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.+.+-
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999999763
No 183
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.93 E-value=0.00085 Score=51.77 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+....
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999998754
No 184
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.93 E-value=0.00077 Score=54.52 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 185
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.93 E-value=0.00085 Score=53.30 Aligned_cols=27 Identities=41% Similarity=0.674 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 367899999999999999999998765
No 186
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.00089 Score=51.91 Aligned_cols=25 Identities=36% Similarity=0.675 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
+...+|+|+|..|.|||||.+.+..
T Consensus 28 ~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 28 NQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhc
Confidence 4788999999999999999999986
No 187
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=96.93 E-value=0.00079 Score=53.40 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 477899999999999999999998754
No 188
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0014 Score=54.68 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...++.++|+.|+||||++.++-...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998764
No 189
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.93 E-value=0.00084 Score=53.78 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477899999999999999999998754
No 190
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.93 E-value=0.0021 Score=56.09 Aligned_cols=54 Identities=30% Similarity=0.484 Sum_probs=40.2
Q ss_pred ccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747 152 EETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV 210 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv 210 (211)
.+++--+.-++++-.||.+ ...+++-+.|++|+||||.++.+.++. .|+.+=|.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~ 77 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWI 77 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEec
Confidence 3455556677888888864 236799999999999999999998865 35555553
No 191
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.00085 Score=52.98 Aligned_cols=26 Identities=38% Similarity=0.713 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.|..-
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999863
No 192
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.91 E-value=0.0014 Score=60.73 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=38.3
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++.++..++..|......-+-++|++|+|||+|++.+....
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999998876555556689999999999999987753
No 193
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.91 E-value=0.00075 Score=52.09 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
..+++|+|++|.|||||.+.|.
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999976
No 194
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.91 E-value=0.00086 Score=54.63 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998753
No 195
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.00086 Score=53.17 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|.+|.|||||++.+..-.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998753
No 196
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.91 E-value=0.0016 Score=54.97 Aligned_cols=46 Identities=28% Similarity=0.313 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.|.+..+++|...+. . ..++-+-++|++|+|||+||+.+.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 346788887777776553 1 246778899999999999999998865
No 197
>PRK06893 DNA replication initiation factor; Validated
Probab=96.91 E-value=0.00098 Score=52.08 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+-++|+.|+|||+|++.+.+..
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999875
No 198
>PRK05439 pantothenate kinase; Provisional
Probab=96.91 E-value=0.0017 Score=52.88 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+-+|||.|..|+||||||+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999987643
No 199
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0015 Score=55.36 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+..+|+++|++|+||||++..+-..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999988664
No 200
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.90 E-value=0.00094 Score=51.94 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 467899999999999999999998754
No 201
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.90 E-value=0.00089 Score=53.97 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 467899999999999999999998754
No 202
>PLN02165 adenylate isopentenyltransferase
Probab=96.90 E-value=0.00091 Score=54.82 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.1
Q ss_pred hhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 167 HIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 167 ~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+.+....+|.|+|+.|+|||||+..+....
T Consensus 37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 3456677799999999999999999987764
No 203
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.90 E-value=0.00082 Score=52.96 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.+.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 46789999999999999999999885
No 204
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.00097 Score=53.30 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+..
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 477899999999999999999998754
No 205
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.00093 Score=52.92 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999998754
No 206
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.90 E-value=0.00097 Score=51.80 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 478899999999999999999998754
No 207
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.90 E-value=0.00092 Score=53.45 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.|.+-.
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477899999999999999999998754
No 208
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.90 E-value=0.0009 Score=53.69 Aligned_cols=27 Identities=41% Similarity=0.601 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 209
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.00099 Score=53.16 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.+..-
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999999863
No 210
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.0009 Score=53.84 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 478899999999999999999998754
No 211
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.00095 Score=53.57 Aligned_cols=26 Identities=38% Similarity=0.557 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.+.+-
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 47789999999999999999999864
No 212
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.00096 Score=52.81 Aligned_cols=25 Identities=40% Similarity=0.635 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
....+++|+|.+|+|||||++.+.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999985
No 213
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.88 E-value=0.00091 Score=55.47 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 477899999999999999999998754
No 214
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.88 E-value=0.0013 Score=53.90 Aligned_cols=26 Identities=42% Similarity=0.660 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+..+|+++|++|+||||++..+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999998765
No 215
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.88 E-value=0.0017 Score=57.80 Aligned_cols=49 Identities=24% Similarity=0.290 Sum_probs=39.9
Q ss_pred CccccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 149 MVMEETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 149 ~~~~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...++++|.+..+.++..||.+ ...+++.++|++|+||||+++.+.+..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445688999889999999875 234679999999999999999998754
No 216
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.88 E-value=0.001 Score=52.57 Aligned_cols=26 Identities=42% Similarity=0.689 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.+.+-
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 47789999999999999999999874
No 217
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.88 E-value=0.001 Score=51.45 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999999998753
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.00094 Score=55.98 Aligned_cols=26 Identities=46% Similarity=0.638 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.++|+++|++|+||||++..+....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45899999999999999999997655
No 219
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.87 E-value=0.001 Score=52.59 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.|.+-
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999864
No 220
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.87 E-value=0.0021 Score=50.26 Aligned_cols=54 Identities=20% Similarity=0.442 Sum_probs=40.4
Q ss_pred CcccCCccccccchHHHHHHHHHh----hccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 144 PTVDGMVMEETVGFDSMLDEVWGH----IADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 144 ~~~~~~~~~~~~g~~~~~~~l~~~----L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+++.+.+.++|.+..++.|+.= +......-+=+||..|+|||+|++.+.+..
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 444555667789988877776543 333455667789999999999999998876
No 221
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.00096 Score=54.94 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 477899999999999999999998754
No 222
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.87 E-value=0.00099 Score=52.79 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 223
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.0028 Score=51.86 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=44.8
Q ss_pred ccccchHHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhhh---hcCCCccEEEEe
Q 041747 152 EETVGFDSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKFL---DINHHFDLVIWV 210 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~~---~v~~~F~~~~wv 210 (211)
.+++|.+..++.+..++..+. ....-++|+.|+||||||+.+..... ....|+|...|.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~ 66 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK 66 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec
Confidence 457899999999999987655 45668899999999999999877531 234566765553
No 224
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.87 E-value=0.00099 Score=53.21 Aligned_cols=27 Identities=41% Similarity=0.731 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+..
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 477899999999999999999998864
No 225
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.0011 Score=52.79 Aligned_cols=27 Identities=37% Similarity=0.674 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999998753
No 226
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.001 Score=51.97 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999998753
No 227
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.00094 Score=53.28 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999998864
No 228
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.86 E-value=0.0011 Score=51.50 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 229
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.86 E-value=0.0022 Score=58.44 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=37.5
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++.++..++..|......-+-++|++|+|||+||+.+....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999998875433444589999999999999998753
No 230
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.86 E-value=0.002 Score=50.11 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=27.5
Q ss_pred HHHHHHHhhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWGHIAD-YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~~L~~-~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+-.+... .....+-++|..|+|||+||+.+++..
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33444444331 345678899999999999999999864
No 231
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.86 E-value=0.00094 Score=52.78 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|+|||||++.+.+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 46789999999999999999999874
No 232
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.0011 Score=51.67 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+..
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 467899999999999999999998754
No 233
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.85 E-value=0.001 Score=53.13 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.|..-.
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 234
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.0011 Score=52.36 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 467899999999999999999998754
No 235
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.001 Score=53.80 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 31 ~~Ge~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 31 EEGSFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477899999999999999999998754
No 236
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.85 E-value=0.0011 Score=52.15 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+....
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 237
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.0011 Score=52.48 Aligned_cols=25 Identities=40% Similarity=0.609 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
....+++|+|.+|.|||||++.|..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999999999976
No 238
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.84 E-value=0.00099 Score=52.17 Aligned_cols=27 Identities=41% Similarity=0.517 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 477899999999999999999998753
No 239
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.84 E-value=0.001 Score=55.13 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|++|.|||||++.|..-.
T Consensus 29 ~~Gei~gIiG~sGaGKSTLlr~I~gl~ 55 (343)
T TIGR02314 29 PAGQIYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 240
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0018 Score=59.31 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=38.9
Q ss_pred ccccchHHHHHHHHHhhccCCCeE-EEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRI-IGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..+..|.+++..+++.- +-++|+.|+||||+|+.+.+..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 568999999999999988766554 5789999999999999988764
No 241
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.0011 Score=52.21 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.+..-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999874
No 242
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.84 E-value=0.0021 Score=54.84 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++.|.+..+++|...+. + ....-+-++|++|+|||+||+.|.+..
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 46688888877777653 1 245567799999999999999999865
No 243
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=96.83 E-value=0.001 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
+..+++|+|++|.|||||++.|.
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHhe
Confidence 35699999999999999999975
No 244
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.83 E-value=0.0012 Score=52.10 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999998754
No 245
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.83 E-value=0.0012 Score=50.56 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 477899999999999999999998753
No 246
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.82 E-value=0.0011 Score=58.22 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++.+|+|.|++|+|||||++.|.+..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 467899999999999999999998753
No 247
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.82 E-value=0.0012 Score=53.63 Aligned_cols=27 Identities=48% Similarity=0.610 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+.++.|++|.|||||.+.+.+-.
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998754
No 248
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.82 E-value=0.0011 Score=52.81 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999998754
No 249
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.0011 Score=50.34 Aligned_cols=27 Identities=41% Similarity=0.594 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....|.||.|.+|.||||+.+.|+.=.
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL 52 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLL 52 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhc
Confidence 578999999999999999999998754
No 250
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.82 E-value=0.0011 Score=53.22 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999998753
No 251
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.82 E-value=0.0011 Score=52.41 Aligned_cols=27 Identities=37% Similarity=0.693 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998764
No 252
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.82 E-value=0.0011 Score=52.16 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
...+.+|+|++|.|||||++.|+
T Consensus 22 ~~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 22 SPKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 35699999999999999999997
No 253
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=96.82 E-value=0.0012 Score=54.56 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 477899999999999999999998753
No 254
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.81 E-value=0.0011 Score=53.12 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||.+.+.+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477899999999999999999998854
No 255
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.81 E-value=0.0011 Score=50.88 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 041747 175 IIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~i~ 194 (211)
+++|+|++|.|||||...|+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999994
No 256
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.81 E-value=0.0012 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
...+.+|+|.+|.|||||+.+|+.
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ 47 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICF 47 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999999974
No 257
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.81 E-value=0.0012 Score=52.45 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998743
No 258
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.81 E-value=0.0012 Score=53.08 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477899999999999999999998754
No 259
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0013 Score=48.07 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+..+++|+|.+|.|||||++.+.+..
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999999999999998754
No 260
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=96.80 E-value=0.0011 Score=52.39 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
...+++|+|.+|.|||||++.+..
T Consensus 21 ~Gei~~l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 21 AGEILHLVGPNGAGKSTLLARMAG 44 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcC
Confidence 668999999999999999999863
No 261
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.80 E-value=0.0028 Score=55.64 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=37.4
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
++++|.+..++.+...+......-+-|+|+.|+||||+|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 457899888888888776655566778999999999999999864
No 262
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0012 Score=52.09 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999998753
No 263
>PLN02348 phosphoribulokinase
Probab=96.80 E-value=0.0015 Score=54.69 Aligned_cols=27 Identities=33% Similarity=0.588 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.+-+|||.|.+|+|||||++.|.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998865
No 264
>CHL00181 cbbX CbbX; Provisional
Probab=96.80 E-value=0.0022 Score=51.90 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 174 RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+-++|++|+||||+|+.+....
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999999996643
No 265
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.80 E-value=0.0012 Score=53.20 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+..
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998854
No 266
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.0032 Score=54.70 Aligned_cols=26 Identities=46% Similarity=0.705 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|+++|++|+||||++.++....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999987654
No 267
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.80 E-value=0.0012 Score=53.94 Aligned_cols=27 Identities=41% Similarity=0.481 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++++|++|.|||||++.+.+-.
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 268
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.80 E-value=0.0011 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041747 174 RIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+++.|.|++|.|||||++.|...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 89999999999999999998754
No 269
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.80 E-value=0.0012 Score=52.52 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999998754
No 270
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0013 Score=51.91 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.|.+-
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 27 PKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999999864
No 271
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0012 Score=52.92 Aligned_cols=27 Identities=37% Similarity=0.489 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999999998753
No 272
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.79 E-value=0.0022 Score=51.46 Aligned_cols=27 Identities=44% Similarity=0.667 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+.++|.++|++|+||||++.++....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357899999999999999998887654
No 273
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.79 E-value=0.002 Score=56.87 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=37.8
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.+.+++..+.+ +-+-++|+.|+||||+|+.+-...
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999998876544 467789999999999999986543
No 274
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.0013 Score=53.21 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.|..-
T Consensus 63 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 63 LSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999873
No 275
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.78 E-value=0.0013 Score=53.61 Aligned_cols=27 Identities=33% Similarity=0.624 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|++|.|||||++.+.+-.
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999998753
No 276
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.0014 Score=51.87 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.|..-
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999999864
No 277
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.0013 Score=52.63 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.+..-
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 47889999999999999999999765
No 278
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.0022 Score=55.50 Aligned_cols=44 Identities=27% Similarity=0.322 Sum_probs=36.6
Q ss_pred ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~ 195 (211)
.+++|.+..++.|.+.+..+.+. -+=++|+.|+||||+|+.+-.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 56899999999888888766654 688999999999999988754
No 279
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.78 E-value=0.0013 Score=53.21 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 280
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0013 Score=53.21 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~ 57 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 477899999999999999999998753
No 281
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.77 E-value=0.0013 Score=52.78 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|..-.
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 477899999999999999999998754
No 282
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.77 E-value=0.0014 Score=50.09 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|++|.|||||++.+..-.
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 478899999999999999999998854
No 283
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.77 E-value=0.0014 Score=51.43 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999999998754
No 284
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.76 E-value=0.0014 Score=52.23 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 31 YQSKVTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 478899999999999999999998864
No 285
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=96.76 E-value=0.0013 Score=52.54 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.|..-.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 286
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.0013 Score=54.66 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.|.+-.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998753
No 287
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.75 E-value=0.0027 Score=47.82 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....++-++|++|.|||||.+.||...
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 477899999999999999999999987
No 288
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.74 E-value=0.0014 Score=54.30 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++++|++|.|||||.+.+.+-.
T Consensus 65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 65 ASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999999998754
No 289
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=96.74 E-value=0.0014 Score=54.60 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|.|||||++.|..-.
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~ 47 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLT 47 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999999999999999998754
No 290
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.74 E-value=0.0014 Score=53.95 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 467899999999999999999998754
No 291
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.0024 Score=55.72 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=38.4
Q ss_pred ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..+..|.+++..+.+. .+=++|+.|+||||+|+.+-...
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999876654 46789999999999999876643
No 292
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.73 E-value=0.0038 Score=43.85 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=33.1
Q ss_pred cccchHHHHHHHHHhhcc-------CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 153 ETVGFDSMLDEVWGHIAD-------YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~-------~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.++|.+-..+.+++.+.+ +++-|++..|..|+|||.+++.|-+.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 456766666666666542 46789999999999999988887655
No 293
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0015 Score=52.66 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~ 57 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 294
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0015 Score=52.09 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+...+++|+|.+|.|||||++.+.+.
T Consensus 40 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 40 HEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 47889999999999999999999864
No 295
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.73 E-value=0.0015 Score=49.79 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|.|||||++.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999999886
No 296
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.0028 Score=56.46 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=38.4
Q ss_pred cccccchHHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 151 MEETVGFDSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
-.+++|.+..+..|..++..++ ...+-++|+.|+||||+|+.+-+.
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999998665 456688999999999999988654
No 297
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0014 Score=53.46 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 31 ~~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 31 NQGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 298
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0015 Score=53.71 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999998754
No 299
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.72 E-value=0.0027 Score=52.38 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=36.9
Q ss_pred ccccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 150 VMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 150 ~~~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
+-+.++|.+..+..++-.+.+.+..-+-+.|..|+||||||+.+-+
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 3456889999888887666555666788999999999999999844
No 300
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.71 E-value=0.0016 Score=52.64 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 63 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 63 PENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 477899999999999999999998653
No 301
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.71 E-value=0.0033 Score=51.77 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=27.9
Q ss_pred HHHHHhhc--cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 162 DEVWGHIA--DYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 162 ~~l~~~L~--~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++..+. ..+..+|+|.|.+|+|||||+..+....
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555443 2567899999999999999999987655
No 302
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.71 E-value=0.0015 Score=55.19 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.-.+.|+|+|..|+|||||++.+....
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998764
No 303
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.70 E-value=0.0016 Score=52.58 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~ 56 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGIL 56 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477899999999999999999998753
No 304
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.0028 Score=56.35 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=38.6
Q ss_pred ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|.+++..+++. .+-++|..|+||||||+.+-+..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999876654 56789999999999999886644
No 305
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=96.70 E-value=0.0013 Score=55.68 Aligned_cols=26 Identities=38% Similarity=0.664 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...||+|+|++|+||||+++.+-.-.
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~i 391 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVI 391 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhccc
Confidence 57899999999999999999998643
No 306
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.70 E-value=0.0042 Score=48.97 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=28.5
Q ss_pred HHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++..|.. .+..+|||.|++|+||+||+..+-...
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 45566666654 467899999999999999999987665
No 307
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.70 E-value=0.0015 Score=52.78 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 30 ~~Ge~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 477899999999999999999998754
No 308
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.69 E-value=0.0027 Score=47.21 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=29.4
Q ss_pred cchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 155 VGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 155 ~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+|....+.++.+.+.. ....-|-|+|..|+||+.+|+.|++..
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4555566666665543 233455599999999999999999864
No 309
>PRK09087 hypothetical protein; Validated
Probab=96.69 E-value=0.0052 Score=47.91 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.-..+.|||+.|+|||+|++.+.+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 34678999999999999999987653
No 310
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.69 E-value=0.0016 Score=54.63 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.|..-.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 311
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.68 E-value=0.0015 Score=57.02 Aligned_cols=27 Identities=37% Similarity=0.721 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 28 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 28 YPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 312
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.68 E-value=0.0017 Score=49.29 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+...+++|.|++|.|||||++.+.+-
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999774
No 313
>PLN02200 adenylate kinase family protein
Probab=96.68 E-value=0.0021 Score=50.41 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+.+|.|.|++|+||||+++.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999997654
No 314
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0016 Score=51.47 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+..++|+||.+|.|||||++.|..=.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCc
Confidence 478999999999999999999997643
No 315
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.67 E-value=0.0033 Score=54.72 Aligned_cols=46 Identities=28% Similarity=0.259 Sum_probs=38.0
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..+..|...+..++. .-+=++|+.|+||||+|+.+.+..
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999988887765543 577789999999999999997754
No 316
>PRK13409 putative ATPase RIL; Provisional
Probab=96.67 E-value=0.0015 Score=57.99 Aligned_cols=27 Identities=33% Similarity=0.618 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+..
T Consensus 97 ~~Gev~gLvG~NGaGKSTLlkiL~G~l 123 (590)
T PRK13409 97 KEGKVTGILGPNGIGKTTAVKILSGEL 123 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998754
No 317
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.0029 Score=56.28 Aligned_cols=44 Identities=27% Similarity=0.384 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
++++|.+..+..|.+++..+.+ ..+-++|+.|+||||+|+.+-+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999887665 5668899999999999999843
No 318
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.66 E-value=0.0019 Score=50.80 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+....+.++|++|+||||+.++|+.=
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMINrL 50 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMINRL 50 (309)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhcc
Confidence 46788999999999999999999763
No 319
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.0018 Score=50.52 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999999998865
No 320
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.0036 Score=52.38 Aligned_cols=46 Identities=26% Similarity=0.403 Sum_probs=38.6
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+...+.+..++.++.. ..+-++|+.|+||||+|+.+-+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999876554 478899999999999999986643
No 321
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.66 E-value=0.0018 Score=50.44 Aligned_cols=27 Identities=37% Similarity=0.724 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+...+||+|.+|.|||||.+.|.+-.
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 377899999999999999999998754
No 322
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.66 E-value=0.0018 Score=52.84 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+..
T Consensus 69 ~~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 69 PEKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 478899999999999999999998753
No 323
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.0017 Score=52.22 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||.+.+.+-.
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 60 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNALL 60 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 324
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.66 E-value=0.0016 Score=56.93 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 35 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 35 HAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998753
No 325
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.66 E-value=0.0017 Score=53.65 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 467899999999999999999998754
No 326
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.65 E-value=0.0019 Score=51.91 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|++-.
T Consensus 28 ~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 477899999999999999999998765
No 327
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=96.65 E-value=0.0019 Score=50.00 Aligned_cols=27 Identities=37% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 29 ~~G~~~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998753
No 328
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=96.65 E-value=0.0018 Score=53.50 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 478899999999999999999998754
No 329
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.64 E-value=0.0019 Score=51.04 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|..-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999998754
No 330
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.64 E-value=0.0017 Score=57.05 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+..
T Consensus 25 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 25 GGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 331
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.64 E-value=0.0018 Score=53.56 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
....++++.|++|+|||||.+.|-.
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3668999999999999999999965
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.63 E-value=0.0017 Score=56.48 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.+.+-.
T Consensus 27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 27 NAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999998753
No 333
>PRK06620 hypothetical protein; Validated
Probab=96.63 E-value=0.0018 Score=50.09 Aligned_cols=24 Identities=29% Similarity=0.171 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 174 RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+-|+|+.|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 668999999999999999987653
No 334
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.63 E-value=0.002 Score=49.09 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....|+|+|.+|+|||||.+.+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 356789999999999999999998763
No 335
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.63 E-value=0.0016 Score=56.72 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 25 ~~Ge~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 25 RPGECVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 336
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.63 E-value=0.0021 Score=51.32 Aligned_cols=27 Identities=44% Similarity=0.660 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.....++|+|..|+|||||++.+++..
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i 93 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNI 93 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHH
Confidence 367889999999999999999999976
No 337
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.63 E-value=0.0018 Score=56.70 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|++|+|||||++.+..-
T Consensus 24 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 24 EEGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 36789999999999999999999885
No 338
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.63 E-value=0.002 Score=51.37 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 477899999999999999999997643
No 339
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.63 E-value=0.0019 Score=52.32 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+..-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (290)
T PRK13634 31 PSGSYVAIIGHTGSGKSTLLQHLNGLL 57 (290)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 340
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.62 E-value=0.0017 Score=54.85 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|..-.
T Consensus 52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~ 78 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVRLLNRLI 78 (400)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 467899999999999999999998754
No 341
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.62 E-value=0.0016 Score=56.78 Aligned_cols=27 Identities=33% Similarity=0.621 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 286 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 312 (506)
T PRK13549 286 RRGEILGIAGLVGAGRTELVQCLFGAY 312 (506)
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998753
No 342
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.61 E-value=0.0027 Score=38.82 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~ 194 (211)
.+..|.|.+|+|||||.-++.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999997753
No 343
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.61 E-value=0.0022 Score=54.08 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+-+|||.|..|+|||||++.|..-.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999996544
No 344
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.61 E-value=0.0044 Score=45.00 Aligned_cols=37 Identities=30% Similarity=0.564 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccE--EEEe
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDL--VIWV 210 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~--~~wv 210 (211)
.+..|+++.|++|.||+||..-+-... ...|+| .+|+
T Consensus 26 a~GeivtlMGPSGcGKSTLls~~~G~L---a~~F~~~G~~~l 64 (213)
T COG4136 26 AKGEIVTLMGPSGCGKSTLLSWMIGAL---AGQFSCTGELWL 64 (213)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhhc---ccCcceeeEEEE
Confidence 367899999999999999999998877 566776 6775
No 345
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.60 E-value=0.0018 Score=57.16 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||.+.|.+..
T Consensus 31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 31 FPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999999864
No 346
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=96.60 E-value=0.002 Score=53.70 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.|.+-.
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998854
No 347
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.60 E-value=0.0018 Score=56.57 Aligned_cols=27 Identities=37% Similarity=0.603 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (506)
T PRK13549 29 RAGEIVSLCGENGAGKSTLMKVLSGVY 55 (506)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999998754
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.60 E-value=0.0018 Score=58.19 Aligned_cols=27 Identities=41% Similarity=0.609 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|.+..
T Consensus 25 ~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 25 NPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999864
No 349
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.0032 Score=56.05 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+++|.+..+..|.+++..+.+ .-+-++|+.|+||||+|..+-+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~ 61 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKA 61 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999998876555 44889999999999999877554
No 350
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=96.60 E-value=0.0018 Score=56.86 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+..-.
T Consensus 33 ~~Ge~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 33 EAGETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 351
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.60 E-value=0.0039 Score=57.13 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=38.1
Q ss_pred ccccchHHHHHHHHHhhcc----C-CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD----Y-RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~----~-~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.+.||+.+.+.|...|.+ . ...++-|+|++|+|||+.++.|.+..
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3467999999999998864 2 23578899999999999999998764
No 352
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.60 E-value=0.0032 Score=48.95 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=37.6
Q ss_pred cccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 151 MEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
..++||.++.++.+--...+.+..-+-|-||+|+||||=+..+..
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHH
Confidence 456899999999998888888888888999999999996555543
No 353
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.58 E-value=0.0045 Score=47.33 Aligned_cols=42 Identities=26% Similarity=0.266 Sum_probs=30.9
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
++++|.+..+.-|.-... +..=+-++|+.|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHH
Confidence 457888877776665555 567889999999999999999854
No 354
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0022 Score=50.19 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~ 49 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFI 49 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 367899999999999999999998754
No 355
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.58 E-value=0.0063 Score=50.87 Aligned_cols=27 Identities=52% Similarity=0.623 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+.++|.++|+.|+||||++..+....
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999987654
No 356
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.57 E-value=0.0019 Score=56.49 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 287 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 287 CRGEILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998753
No 357
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.57 E-value=0.0046 Score=51.31 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=37.9
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.+..++..... ..+=++|+.|+||||+|+.+....
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999876554 467789999999999998886553
No 358
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.57 E-value=0.0023 Score=50.80 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+..
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 45 KPGQKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 467899999999999999999998753
No 359
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.57 E-value=0.002 Score=56.59 Aligned_cols=27 Identities=37% Similarity=0.537 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|.+-.
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 369 (530)
T PRK15064 343 EAGERLAIIGENGVGKTTLLRTLVGEL 369 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 360
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.56 E-value=0.0022 Score=51.50 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+-.
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999999998754
No 361
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.56 E-value=0.0023 Score=49.82 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+..+.+|+|.+|+|||||.+.|-.-.
T Consensus 32 ~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 32 PRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred cCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 478899999999999999999997643
No 362
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.56 E-value=0.0022 Score=53.52 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||.+.|..-.
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 467899999999999999999998754
No 363
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.55 E-value=0.0019 Score=56.38 Aligned_cols=27 Identities=41% Similarity=0.591 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 29 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 29 YPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 478899999999999999999998754
No 364
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.0013 Score=48.94 Aligned_cols=26 Identities=38% Similarity=0.687 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...|++|||-+|+|||||.+.|-.+.
T Consensus 31 PGeVLgiVGESGSGKtTLL~~is~rl 56 (258)
T COG4107 31 PGEVLGIVGESGSGKTTLLKCISGRL 56 (258)
T ss_pred CCcEEEEEecCCCcHHhHHHHHhccc
Confidence 67899999999999999999997754
No 365
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.55 E-value=0.0046 Score=50.53 Aligned_cols=27 Identities=41% Similarity=0.597 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....|.++|+.|+||||+++.+....
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 467799999999999999999997654
No 366
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.55 E-value=0.0067 Score=52.88 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=32.5
Q ss_pred ccccchHHHHHHHHHhhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIA---D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++++...+. + ...+=+-++|++|+|||+||+.+.+..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 457787766665554432 2 123447789999999999999998764
No 367
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.55 E-value=0.0037 Score=50.89 Aligned_cols=27 Identities=33% Similarity=0.553 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|+|+|++|+|||||+..+....
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999987654
No 368
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.54 E-value=0.0023 Score=52.64 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.....+.++|++|+|||||.+.|-.=
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999763
No 369
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.0043 Score=54.90 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=38.5
Q ss_pred ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|..++..+.+. .+-++|+.|+||||+|+.+-+..
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999876654 46789999999999999887643
No 370
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.54 E-value=0.0023 Score=53.21 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.|.+-.
T Consensus 30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 467899999999999999999998754
No 371
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.54 E-value=0.0021 Score=57.72 Aligned_cols=27 Identities=41% Similarity=0.597 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|.+..
T Consensus 336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999864
No 372
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.54 E-value=0.0019 Score=56.43 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|.+-.
T Consensus 287 ~~Ge~~~l~G~NGsGKSTLl~~i~Gl~ 313 (510)
T PRK15439 287 RAGEILGLAGVVGAGRTELAETLYGLR 313 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999998753
No 373
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.53 E-value=0.0022 Score=57.49 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|..-.
T Consensus 40 ~~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 40 QRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 467899999999999999999998754
No 374
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.53 E-value=0.002 Score=57.80 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.|.+..
T Consensus 27 ~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 27 EDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999998854
No 375
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.0038 Score=54.75 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=37.5
Q ss_pred ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+++|.+..++.|..++..+++. .+-++|+.|+||||+|+.+-..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999998876654 4578999999999999988654
No 376
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.53 E-value=0.0023 Score=48.89 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
-+++.|.|++|.|||||.+.|.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3799999999999999999987
No 377
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.53 E-value=0.0022 Score=56.27 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++...++|+|+.|.|||||++.+.+-.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 588999999999999999999997654
No 378
>PRK13409 putative ATPase RIL; Provisional
Probab=96.53 E-value=0.0022 Score=56.98 Aligned_cols=27 Identities=41% Similarity=0.706 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+....
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~ 389 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVL 389 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 379
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.52 E-value=0.0021 Score=57.66 Aligned_cols=27 Identities=44% Similarity=0.556 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|.+..
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 369 (635)
T PRK11147 343 QRGDKIALIGPNGCGKTTLLKLMLGQL 369 (635)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999999864
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=96.52 E-value=0.0029 Score=52.18 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++.+|.++|++|+||||++..+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999888887654
No 381
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=96.52 E-value=0.0022 Score=56.30 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 310 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 336 (529)
T PRK15134 310 RPGETLGLVGESGSGKSTTGLALLRLI 336 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 467899999999999999999998753
No 382
>PRK06851 hypothetical protein; Provisional
Probab=96.51 E-value=0.14 Score=42.77 Aligned_cols=39 Identities=26% Similarity=0.224 Sum_probs=30.3
Q ss_pred cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 155 VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
-|.-+-.+.++ ++--+++-|-|.+|+|||||++.+....
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 35555555554 3456789999999999999999999876
No 383
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.51 E-value=0.0022 Score=56.63 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+..
T Consensus 348 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 374 (556)
T PRK11819 348 PPGGIVGIIGPNGAGKSTLFKMITGQE 374 (556)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 384
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.51 E-value=0.0021 Score=56.74 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+..
T Consensus 346 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 372 (552)
T TIGR03719 346 PPGGIVGVIGPNGAGKSTLFRMITGQE 372 (552)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 477899999999999999999998754
No 385
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.51 E-value=0.0036 Score=54.39 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.|.+..++++...+.- ..++-+-++|++|+|||++|+.+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 3466788888887776531 245568899999999999999999875
No 386
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.50 E-value=0.0044 Score=55.53 Aligned_cols=45 Identities=27% Similarity=0.384 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+++|.+..+..|..++..+++ .-+-++|+.|+||||+|+.+-+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999999887664 46788999999999999987654
No 387
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.49 E-value=0.0022 Score=55.71 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|++|.|||||++.+.+.
T Consensus 284 ~~Ge~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 284 NPGEHWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 46789999999999999999999874
No 388
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.49 E-value=0.002 Score=55.98 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.++.-.
T Consensus 272 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 272 HKGEILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred eCCcEEEEecCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999998753
No 389
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.49 E-value=0.0056 Score=44.73 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....|+++|++|+||+||.+.+.++.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCC
Confidence 34568899999999999999998754
No 390
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.49 E-value=0.0055 Score=46.25 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 155 VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.|.+.-.+.|...+. ....+.++|.+|+|||||.+.+.+..
T Consensus 111 ~gi~eL~~~l~~~l~--~~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 111 WGVEELINAIKKLAK--KGGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCHHHHHHHHHHHhh--cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 355666666666553 44678999999999999999998753
No 391
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.49 E-value=0.0023 Score=55.82 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 28 RAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 392
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.49 E-value=0.0048 Score=55.77 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
++++|.+..++.|.+++..+++ +.+-++|..|+||||+++.+-+.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999886654 45568999999999999876554
No 393
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.49 E-value=0.0025 Score=50.38 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~ 194 (211)
.+..|+|++|+|||||+.+|+
T Consensus 23 ~~~~i~G~NGsGKStll~ai~ 43 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAIS 43 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999987
No 394
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.48 E-value=0.0063 Score=42.70 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++..||...|.=|.|||||+|.+....
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 377899999999999999999998765
No 395
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.48 E-value=0.0023 Score=55.76 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+..-.
T Consensus 276 ~~Ge~~~liG~NGsGKSTLl~~l~G~~ 302 (501)
T PRK10762 276 RKGEILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred cCCcEEEEecCCCCCHHHHHHHHhCCC
Confidence 466899999999999999999998753
No 396
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0027 Score=49.11 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+-+|.|++|.||+||+..|-.++
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 577899999999999999999998765
No 397
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.48 E-value=0.0023 Score=55.64 Aligned_cols=26 Identities=42% Similarity=0.529 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|+|||||++.+.+-.
T Consensus 23 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 23 PHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 67899999999999999999998753
No 398
>PRK12377 putative replication protein; Provisional
Probab=96.48 E-value=0.0058 Score=48.33 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+..-+-++|..|+|||+||..|.+..
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999986
No 399
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.47 E-value=0.0043 Score=52.94 Aligned_cols=26 Identities=42% Similarity=0.673 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.+++.++|++|+||||++..+....
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999998886654
No 400
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.47 E-value=0.0022 Score=55.95 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+....
T Consensus 277 ~~Ge~~~iiG~NGsGKSTLlk~l~G~~ 303 (501)
T PRK11288 277 RAGEIVGLFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred eCCcEEEEEcCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999998753
No 401
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.0042 Score=52.54 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|.++|++|+||||++..+....
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999987643
No 402
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.47 E-value=0.0025 Score=56.23 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.|.+..
T Consensus 29 ~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 29 FPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999999754
No 403
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.46 E-value=0.0028 Score=52.81 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||.+.|..-.
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 367899999999999999999998754
No 404
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.46 E-value=0.0026 Score=55.74 Aligned_cols=27 Identities=37% Similarity=0.545 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 308 ~~Ge~~~l~G~NGsGKSTLl~~l~Gl~ 334 (520)
T TIGR03269 308 KEGEIFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998753
No 405
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.46 E-value=0.0029 Score=50.30 Aligned_cols=27 Identities=44% Similarity=0.614 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|.+..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 34 PNNSIFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 406
>PLN03073 ABC transporter F family; Provisional
Probab=96.45 E-value=0.0024 Score=58.06 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.....++|+|.+|+|||||++.|...
T Consensus 201 ~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 201 AFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 46789999999999999999999863
No 407
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.0022 Score=50.03 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.-.--.|+|++|.|||||++.+..+.
T Consensus 56 ~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 56 PGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred CCCcEEEECCCCCCHHHHHHHHhccc
Confidence 55678899999999999999998765
No 408
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.0048 Score=45.73 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....+.+.|++|+||+||.+.+|.++
T Consensus 35 ~aGECvvL~G~SG~GKStllr~LYaNY 61 (235)
T COG4778 35 NAGECVVLHGPSGSGKSTLLRSLYANY 61 (235)
T ss_pred cCccEEEeeCCCCCcHHHHHHHHHhcc
Confidence 466778899999999999999999987
No 409
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.45 E-value=0.0036 Score=47.17 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 170 DYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+.+.-|+|+|.+|+|||||++.+.+.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 346778999999999999999999874
No 410
>PRK09183 transposase/IS protein; Provisional
Probab=96.44 E-value=0.0031 Score=50.26 Aligned_cols=26 Identities=42% Similarity=0.434 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+.|+|++|+|||+||..+....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999996653
No 411
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.44 E-value=0.0057 Score=50.87 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=39.8
Q ss_pred CCccccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 148 GMVMEETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 148 ~~~~~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
|.....++|.+.....+...+....+ .-+-++|+.|+||||||..+-...
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 33345689999999999999876554 468889999999999999876654
No 412
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.44 E-value=0.0027 Score=56.89 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.|..-.
T Consensus 348 ~~Ge~~~lvG~nGsGKSTLlk~i~Gl~ 374 (623)
T PRK10261 348 WPGETLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999999998743
No 413
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.44 E-value=0.0063 Score=50.49 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.....|.|.|+.|+||||+++.+.+..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345789999999999999999988754
No 414
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=96.43 E-value=0.0036 Score=53.66 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHH
Q 041747 171 YRCRIIGLYGIGGVGKTTLLK 191 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~ 191 (211)
....+++|+|+.|.|||||++
T Consensus 30 ~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 30 PSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred cCCCEEEEECCCCCCHHHHHh
Confidence 578999999999999999999
No 415
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.43 E-value=0.0057 Score=50.41 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=40.6
Q ss_pred ccccchHHHHHHHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|.+..++++++.+.. ..-+|+-++|+.|.|||||+..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999874 467899999999999999999997755
No 416
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.0056 Score=54.71 Aligned_cols=46 Identities=28% Similarity=0.341 Sum_probs=37.8
Q ss_pred ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..+..|...+..+.+. .+-++|+.|+||||+|+.+.+..
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 56899999999999988766654 35689999999999999986553
No 417
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.42 E-value=0.0031 Score=52.05 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+++..
T Consensus 106 ~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 106 KRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999999754
No 418
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.42 E-value=0.0027 Score=41.74 Aligned_cols=23 Identities=48% Similarity=0.693 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 175 IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++.+.|.+|+||||++..+....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998765
No 419
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.42 E-value=0.0025 Score=55.52 Aligned_cols=27 Identities=33% Similarity=0.639 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.+.+-.
T Consensus 284 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 310 (500)
T TIGR02633 284 RRGEILGVAGLVGAGRTELVQALFGAY 310 (500)
T ss_pred eCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 420
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.40 E-value=0.003 Score=53.02 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||.+.|..-.
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 421
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.40 E-value=0.034 Score=40.32 Aligned_cols=107 Identities=11% Similarity=0.170 Sum_probs=74.9
Q ss_pred cchHh-hHhHHHHHhhhccchhhchhHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHHHHHHHH
Q 041747 5 SPVLD-ILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDV 83 (211)
Q Consensus 5 ~~v~~-~~~~l~~~~~~~~~~~~~~~~~v~~L~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~v~~~~~~~ed 83 (211)
+++.+ +++.|...+.+....-..++.-++.|...++.+...+..|+..-.+-+ ..-+.-++++.+...++++
T Consensus 8 gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld-------~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 8 GAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELD-------RPRQEEIERLKELLEKGKE 80 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcC-------CchhHHHHHHHHHHHHHHH
Confidence 44444 677788888888888888999999999999999999999876542221 2225556778888888888
Q ss_pred HhHhhHHHHhchhcCCcccCCccchhhhHHHHHHHHHHHHHHHH
Q 041747 84 ISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIK 127 (211)
Q Consensus 84 ~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~ 127 (211)
++..|..-. -.++..+++.+++++++.+.+.....
T Consensus 81 LV~k~sk~~---------r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 81 LVEKCSKVR---------RWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHhcccc---------HHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 887653211 01334456678888888877776543
No 422
>PRK00098 GTPase RsgA; Reviewed
Probab=96.39 E-value=0.0043 Score=50.48 Aligned_cols=34 Identities=41% Similarity=0.556 Sum_probs=27.1
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++.|...|. .++++++|.+|+|||||.+.+.+..
T Consensus 155 i~~L~~~l~---gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 155 LDELKPLLA---GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred HHHHHhhcc---CceEEEECCCCCCHHHHHHHHhCCc
Confidence 455666653 4689999999999999999998754
No 423
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.39 E-value=0.0028 Score=48.45 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
..++.|+|++|.|||||++.|..
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 48999999999999999999983
No 424
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.38 E-value=0.0059 Score=49.04 Aligned_cols=37 Identities=27% Similarity=0.518 Sum_probs=29.5
Q ss_pred HHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+|+..|.. .+..+|||.|.+|+||+||.-.+-...
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 4556666654 467899999999999999999887665
No 425
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.38 E-value=0.0057 Score=54.37 Aligned_cols=47 Identities=26% Similarity=0.415 Sum_probs=39.0
Q ss_pred cccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 151 MEETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
-.+++|.+..++.|.+++..+++ .-+=++|+.|+||||+|+.+-+..
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999876654 467889999999999999986643
No 426
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.38 E-value=0.0062 Score=50.66 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+-+..++|||+.|.|||.+|+.|+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 568899999999999999999999976
No 427
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0038 Score=46.83 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
.....+-|.|++|+|||||.+.|..
T Consensus 26 ~~Ge~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 26 NAGEALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHc
Confidence 3567888999999999999999976
No 428
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.38 E-value=0.003 Score=54.81 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....++||||.+|+|||||++.|-+=.
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLL 341 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999997643
No 429
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.37 E-value=0.0033 Score=53.24 Aligned_cols=27 Identities=41% Similarity=0.705 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||.+.+..-.
T Consensus 27 ~~Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 27 REGSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 477899999999999999999998754
No 430
>PLN03073 ABC transporter F family; Provisional
Probab=96.36 E-value=0.003 Score=57.36 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+..
T Consensus 533 ~~Ge~i~LvG~NGsGKSTLLk~L~Gll 559 (718)
T PLN03073 533 DLDSRIAMVGPNGIGKSTILKLISGEL 559 (718)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999998753
No 431
>PRK05642 DNA replication initiation factor; Validated
Probab=96.36 E-value=0.0041 Score=48.76 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+-|+|..|+|||.|++.+.+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999998764
No 432
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.35 E-value=0.0065 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 175 IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
-+-++|++|+||||+|+.+....
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999997765543
No 433
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.35 E-value=0.0049 Score=49.85 Aligned_cols=34 Identities=35% Similarity=0.476 Sum_probs=27.1
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+.|...|. .++++++|++|+|||||++.+.+..
T Consensus 152 i~~L~~~L~---~k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 152 LDELREYLK---GKTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred HHHHHhhhc---cceEEEECCCCCCHHHHHHHHhchh
Confidence 455555664 2789999999999999999998754
No 434
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.35 E-value=0.0056 Score=55.93 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++.|.+..++.+..++.- ...+-|-++|++|+||||||+.+.+..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 3467888888887766531 234668899999999999999998865
No 435
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.33 E-value=0.0033 Score=56.83 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....|+|+|.+|+|||||+|.+-+-.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 578899999999999999999986643
No 436
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.32 E-value=0.0038 Score=52.20 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||.+.|..-.
T Consensus 29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467799999999999999999998754
No 437
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.32 E-value=0.0073 Score=51.08 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=34.2
Q ss_pred cccchHHHHHHHHHhhcc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIAD--------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|.++.++.+.-.+.+ ...+-|-++|+.|+||||||+.+-...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 367877777777655542 124678899999999999999998765
No 438
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.32 E-value=0.0086 Score=50.14 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=31.4
Q ss_pred chHHHHHHHHHhhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 156 GFDSMLDEVWGHIAD---YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 156 g~~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...++.+.+...... ....+|+|+|..|+|||||+..+....
T Consensus 185 NTpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l 229 (366)
T PRK14489 185 NTPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPEL 229 (366)
T ss_pred CCHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHH
Confidence 345566666554321 256799999999999999999998876
No 439
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.32 E-value=0.0037 Score=52.54 Aligned_cols=27 Identities=41% Similarity=0.632 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||.+.|..-.
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999998743
No 440
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.31 E-value=0.0044 Score=45.86 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.....|.|.|++|.||+||.+.|++=
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 36778999999999999999999873
No 441
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.0063 Score=55.16 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...||+++|++|+||||++.++....
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhH
Confidence 35799999999999999999988755
No 442
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.29 E-value=0.0068 Score=51.20 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=36.2
Q ss_pred ccccchHHHHHHHHHhhccCC----------CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 152 EETVGFDSMLDEVWGHIADYR----------CRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~----------~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
++++|.+..++.|.+++..+. ..-+-++|+.|+||||+|..+-..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 457899999999999887543 455778999999999999987543
No 443
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.29 E-value=0.0069 Score=48.39 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 156 GFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 156 g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
|......+.+..+......+|.|.|..|+||||+++.+.+..
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 443333333333344456689999999999999999886643
No 444
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.28 E-value=0.0058 Score=51.96 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+.+|.++|..|+||||++..+....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987654
No 445
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.28 E-value=0.0091 Score=49.96 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=32.6
Q ss_pred HHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 159 SMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 159 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+.+++.+.+.....+-|.|.||+|||+|.+.+.+..
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 345666677766778899999999999999999999876
No 446
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.0042 Score=48.70 Aligned_cols=26 Identities=42% Similarity=0.475 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.....+.|+|.+|+|||||++.+..=
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~GL 53 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNGL 53 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCc
Confidence 46789999999999999999998763
No 447
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.0043 Score=50.08 Aligned_cols=26 Identities=38% Similarity=0.623 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+...+.||+|.+|.|||||.+.++.=
T Consensus 30 ~~GeI~GIIG~SGAGKSTLiR~iN~L 55 (339)
T COG1135 30 PKGEIFGIIGYSGAGKSTLLRLINLL 55 (339)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcc
Confidence 57889999999999999999999753
No 448
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.25 E-value=0.0041 Score=52.32 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.|..-.
T Consensus 48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~ 74 (382)
T TIGR03415 48 EEGEICVLMGLSGSGKSSLLRAVNGLN 74 (382)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 449
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.25 E-value=0.0049 Score=47.30 Aligned_cols=25 Identities=40% Similarity=0.635 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
.+-.|.++.|++|+|||||.+.++.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 4778999999999999999999875
No 450
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.25 E-value=0.004 Score=54.28 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|.|||||++.+.+-.
T Consensus 48 ~~GEivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 48 PEGEIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred eCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999998854
No 451
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.24 E-value=0.0086 Score=53.27 Aligned_cols=46 Identities=28% Similarity=0.363 Sum_probs=37.8
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|..++..+.+ ..+-++|+.|+||||+|+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999888876554 456789999999999999987653
No 452
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.22 E-value=0.0078 Score=48.74 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+-+|.|.|++|+||||+|+.+....
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998875
No 453
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0085 Score=50.10 Aligned_cols=46 Identities=26% Similarity=0.310 Sum_probs=38.4
Q ss_pred ccccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.+.+|++..+++...|.. ..+.-+-|+|..|+|||+.++.|....
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l 66 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEEL 66 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHH
Confidence 3378999999999988764 334459999999999999999999876
No 454
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.20 E-value=0.014 Score=48.99 Aligned_cols=35 Identities=37% Similarity=0.472 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhccC----CCeEEEEEcCCCCcHHH-HHHH
Q 041747 158 DSMLDEVWGHIADY----RCRIIGLYGIGGVGKTT-LLKK 192 (211)
Q Consensus 158 ~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTT-La~~ 192 (211)
......+..++.++ +-++|.+||+.|+|||| ||+.
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKL 223 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKL 223 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHH
Confidence 44555566665544 58999999999999965 5554
No 455
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.18 E-value=0.0047 Score=54.80 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....++|+|.+|.|||||++.+..-.
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 577899999999999999999998754
No 456
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.18 E-value=0.01 Score=50.21 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHhhcc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD--------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|.+..+..+..++.+ .....|-++|+.|+||||||+.+-...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888888888777643 124678999999999999999997754
No 457
>PF13245 AAA_19: Part of AAA domain
Probab=96.17 E-value=0.0067 Score=38.80 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=17.5
Q ss_pred CCeEEEEEcCCCCcHH-HHHHHHHh
Q 041747 172 RCRIIGLYGIGGVGKT-TLLKKLNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKT-TLa~~i~~ 195 (211)
+-.+..|.|++|.||| |+++.+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567778999999999 55555443
No 458
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.15 E-value=0.0098 Score=48.39 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...-|-|+|..|+|||||++.+.+..
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34566799999999999999998753
No 459
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.14 E-value=0.0098 Score=50.53 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=33.6
Q ss_pred cccchHHHHHHHHHhhcc-------C---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIAD-------Y---------RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~-------~---------~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|.+..++.|...+.+ . ...-+-++|+.|+||||||+.+....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 478988888877555421 0 12568899999999999999998654
No 460
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.13 E-value=0.0058 Score=45.82 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
....+++|+|++|.||+||.+.|-.
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHh
Confidence 4678999999999999999999865
No 461
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.13 E-value=0.009 Score=47.17 Aligned_cols=34 Identities=32% Similarity=0.504 Sum_probs=27.0
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++++...|. -+++.++|++|+||+||.+.+.++.
T Consensus 111 i~eLf~~l~---~~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 111 LKELIEALQ---NRISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred HHHHHhhhc---CCEEEEECCCCCCHHHHHHHHhhhh
Confidence 555666554 2588899999999999999998764
No 462
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.13 E-value=0.0098 Score=51.21 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=37.7
Q ss_pred ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+++|.+..+..|..++..+.. ..+-++|+.|+||||+|+.+-..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999876654 56778999999999999988654
No 463
>PRK08116 hypothetical protein; Validated
Probab=96.12 E-value=0.0063 Score=48.73 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 174 RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.-+-++|..|+|||.||..|++..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l 138 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL 138 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999986
No 464
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.11 E-value=0.0089 Score=55.01 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=38.6
Q ss_pred ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|..++..+++. .+-++|+.|+||||+|+.+-+..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999876654 57789999999999999986654
No 465
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0051 Score=50.00 Aligned_cols=28 Identities=46% Similarity=0.591 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhhcC
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNKFLDIN 201 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~~~~v~ 201 (211)
=++|-++|++|.|||+|.+.+..+. .++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eee
Confidence 3678889999999999999999876 554
No 466
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=96.11 E-value=0.012 Score=47.88 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhccC--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 158 DSMLDEVWGHIADY--RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 158 ~~~~~~l~~~L~~~--~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+..+.+++..|.+. +...|.|+|.+|+||||+.+.|.+..
T Consensus 21 q~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 21 QTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred HHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 45666666666653 45678999999999999999999864
No 467
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.11 E-value=0.0051 Score=55.77 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....++|+|..|+|||||++.+.+-.
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999997654
No 468
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.013 Score=49.87 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCcH-HHHHHHHHhhhhhcCCCccE
Q 041747 171 YRCRIIGLYGIGGVGK-TTLLKKLNNKFLDINHHFDL 206 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGK-TTLa~~i~~~~~~v~~~F~~ 206 (211)
.++.||++||-+|+|| |+||+.-|==. +.+|..
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLl---qNkfrV 409 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLL---QNKFRV 409 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHH---hCCceE
Confidence 5799999999999999 55777666433 455644
No 469
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.10 E-value=0.0058 Score=53.17 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|+|.|++|+||||+++.+....
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999998764
No 470
>COG4240 Predicted kinase [General function prediction only]
Probab=96.09 E-value=0.0095 Score=46.13 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++-++||.|+-|+|||||+-.|++..
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L 74 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLL 74 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHH
Confidence 568899999999999999999999876
No 471
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.0038 Score=53.50 Aligned_cols=24 Identities=50% Similarity=0.812 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
..+.=|+||.+|+|||||.++|-+
T Consensus 105 ~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 105 RGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred cccccceeCCCCCcHHHHHHHHHh
Confidence 567889999999999999999988
No 472
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.012 Score=49.33 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=36.7
Q ss_pred cccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHh
Q 041747 151 MEETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~ 195 (211)
..+++|.+.....|.+.+..+.+. -+-++|+.|+||||||..+-.
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999988876644 588999999999999976544
No 473
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.06 E-value=0.013 Score=51.81 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 155 VGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 155 ~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.+.+..+.|.+.... ++..+|-++|+.|+||||+|+.+....
T Consensus 372 f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 372 FSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred hcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 3444444544443322 456799999999999999999998865
No 474
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.05 E-value=0.0058 Score=47.19 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
.+++.|+|++|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999863
No 475
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.05 E-value=0.011 Score=46.82 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=36.1
Q ss_pred ccccchHHHHH---HHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLD---EVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~---~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++++|.+..+. -|+..|.+ ..++-|-.+|+.|.|||-+|+.+-|+.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 45678766544 46666665 468889999999999999999999876
No 476
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.05 E-value=0.018 Score=45.38 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=28.1
Q ss_pred HHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+..+..+..+ .+..-+-++|.+|+|||+|+..|.+..
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44555555432 234578899999999999999999876
No 477
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.04 E-value=0.01 Score=48.52 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....|.|+|..|.|||||++.+.+..
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 56899999999999999999988654
No 478
>PRK06526 transposase; Provisional
Probab=96.04 E-value=0.0057 Score=48.56 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+..-+-++|++|+|||+||..|....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 45568999999999999999997754
No 479
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.012 Score=51.10 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+++|.+..+..|..++..+.+. .+-++|+.|+||||+|+.+...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~ 61 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKV 61 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999765544 4567999999999999997654
No 480
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.03 E-value=0.0058 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
.....++|+|++|+|||||++.+-.
T Consensus 360 ~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 360 QAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred cCCceEEEECCCCccHHHHHHHHHc
Confidence 4788999999999999999999865
No 481
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.02 E-value=0.0092 Score=53.37 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=41.5
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV 210 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv 210 (211)
+.++|.+..++.|...+.. .+.+-++|+.|+|||||++.+.... . ..+|+..+|.
T Consensus 31 ~~vigq~~a~~~L~~~~~~--~~~~l~~G~~G~GKttla~~l~~~l-~-~~~~~~~~~~ 85 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQ--RRHVMMIGSPGTGKSMLAKAMAELL-P-KEELQDILVY 85 (637)
T ss_pred HHcCChHHHHHHHHHHHHh--CCeEEEECCCCCcHHHHHHHHHHHc-C-hHhHHHheEe
Confidence 4578988888888877763 3578899999999999999988754 2 2345666664
No 482
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.0078 Score=50.64 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|.++|+.|+||||.+..+-...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999887654
No 483
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.0074 Score=48.90 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....++||||-+|+||||+++.|..-.
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~ll 55 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLL 55 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhcc
Confidence 477899999999999999999998743
No 484
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.99 E-value=0.012 Score=54.74 Aligned_cols=45 Identities=29% Similarity=0.335 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHHhhcc--------C-CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIAD--------Y-RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~--------~-~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|.+..++.+...+.. + ...++-++|+.|+||||||+.+.+..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467988888887777652 1 12478899999999999999998754
No 485
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.99 E-value=0.0065 Score=55.31 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|++|.|||||++.+.+-.
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 578999999999999999999998754
No 486
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.98 E-value=0.0064 Score=53.65 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....++|+|.+|.|||||++.+.+-.
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~ 373 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999997643
No 487
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.97 E-value=0.0065 Score=53.81 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....++|||+.|.|||||++.+..-.
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~ 379 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLY 379 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 478899999999999999999997654
No 488
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.013 Score=48.81 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
=+=+-++|++|.|||-||+.|+.+.
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhh
Confidence 3567789999999999999999986
No 489
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.96 E-value=0.013 Score=51.89 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=38.6
Q ss_pred ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..+..|..++.++.+. .+-++|+.|+||||+|+.+.+..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 56899999999999999865544 57789999999999999987654
No 490
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.2 Score=45.74 Aligned_cols=45 Identities=29% Similarity=0.348 Sum_probs=33.0
Q ss_pred ccccchHHHHHHHHHhhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 152 EETVGFDSMLDEVWGHIAD---------YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..++|.+..+..+...+.- ....+.-.+|+.|||||-||+.+-..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~ 544 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA 544 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH
Confidence 3467888888888777652 23456666899999999998887543
No 491
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.96 E-value=0.0081 Score=44.98 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.9
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 169 ADYRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 169 ~~~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
......||+|+|-+|+||+|+.+-|+-
T Consensus 28 ~A~~GdVisIIGsSGSGKSTfLRCiN~ 54 (256)
T COG4598 28 QANAGDVISIIGSSGSGKSTFLRCINF 54 (256)
T ss_pred ecCCCCEEEEecCCCCchhHHHHHHHh
Confidence 346789999999999999999999864
No 492
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.95 E-value=0.019 Score=47.38 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=27.9
Q ss_pred HHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++....++.+ ....-+-++|..|+|||.||..|.+..
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHH
Confidence 34444444442 234779999999999999999998876
No 493
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.95 E-value=0.0065 Score=55.27 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....++|+|..|.|||||++.+.+-.
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 578899999999999999999997654
No 494
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.94 E-value=0.014 Score=49.94 Aligned_cols=26 Identities=42% Similarity=0.538 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+.+|-++|..|+||||++..+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999998765
No 495
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.93 E-value=0.0068 Score=55.15 Aligned_cols=27 Identities=33% Similarity=0.381 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....++|+|..|+|||||++.+.+-.
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 578899999999999999999997643
No 496
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.93 E-value=0.012 Score=49.17 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=25.7
Q ss_pred HHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 164 VWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 164 l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+..++. .....|.|+|+.|+||||+++.+.+..
T Consensus 126 ~~~~~~-~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 126 IIDAIA-PQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred HHHHHh-ccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 344443 356899999999999999999987653
No 497
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.93 E-value=0.0017 Score=50.51 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++++|++|.|||||.+.|-.-
T Consensus 28 ~~Gei~~LIGPNGAGKTTlfNlitG~ 53 (250)
T COG0411 28 RPGEIVGLIGPNGAGKTTLFNLITGF 53 (250)
T ss_pred cCCeEEEEECCCCCCceeeeeeeccc
Confidence 46789999999999999999887543
No 498
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=95.92 E-value=0.015 Score=46.12 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=27.9
Q ss_pred HHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++...+.+ +..-.|.++|..|+|||||++.|.+..
T Consensus 17 ~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~ 55 (249)
T cd01853 17 ALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGER 55 (249)
T ss_pred HHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3344444433 467789999999999999999999864
No 499
>PRK12289 GTPase RsgA; Reviewed
Probab=95.92 E-value=0.009 Score=49.68 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=26.7
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++|...|.+ .++.|+|++|+|||||++.+..+.
T Consensus 163 I~eL~~~L~~---ki~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 163 LEALLEQLRN---KITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred HHHHhhhhcc---ceEEEEeCCCCCHHHHHHHHcCcc
Confidence 4566666642 468999999999999999998654
No 500
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.92 E-value=0.0068 Score=53.89 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++...++|+|..|.|||||++.+.+-.
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999999997643
Done!