Query 041747
Match_columns 211
No_of_seqs 113 out of 1690
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 17:29:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qfl_A MLA10; coiled-coil, (CC 99.6 8.1E-16 2.8E-20 106.2 8.5 80 7-93 3-83 (115)
2 2a5y_B CED-4; apoptosis; HET: 99.4 6.8E-14 2.3E-18 121.2 6.2 56 155-211 131-191 (549)
3 1vt4_I APAF-1 related killer D 99.1 1.6E-11 5.5E-16 111.5 3.1 57 154-211 130-188 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.1 5.7E-11 2E-15 103.4 4.9 59 152-211 124-186 (591)
5 3sfz_A APAF-1, apoptotic pepti 99.1 5.4E-11 1.8E-15 111.1 3.8 61 151-211 123-186 (1249)
6 1jbk_A CLPB protein; beta barr 98.3 1.6E-06 5.5E-11 63.6 6.3 46 152-197 22-67 (195)
7 2qen_A Walker-type ATPase; unk 98.2 2.2E-06 7.5E-11 69.1 6.3 44 152-197 12-55 (350)
8 2fna_A Conserved hypothetical 98.2 4.3E-06 1.5E-10 67.5 7.5 42 152-197 13-54 (357)
9 2p65_A Hypothetical protein PF 98.2 2.5E-06 8.6E-11 62.4 5.6 46 152-197 22-67 (187)
10 2qby_A CDC6 homolog 1, cell di 98.1 2.6E-06 8.8E-11 69.6 5.3 46 152-197 20-69 (386)
11 2chg_A Replication factor C sm 98.1 4.2E-06 1.4E-10 62.8 5.9 46 152-197 17-62 (226)
12 1njg_A DNA polymerase III subu 98.1 6E-06 2.1E-10 62.7 6.0 46 152-197 23-69 (250)
13 1w5s_A Origin recognition comp 98.1 2.1E-06 7.1E-11 71.0 3.6 46 152-197 22-76 (412)
14 2qby_B CDC6 homolog 3, cell di 98.0 9.1E-06 3.1E-10 66.6 5.5 46 152-197 20-69 (384)
15 1fnn_A CDC6P, cell division co 98.0 1.8E-05 6.1E-10 64.8 7.3 46 152-197 17-68 (389)
16 2v1u_A Cell division control p 97.9 9.1E-06 3.1E-10 66.4 5.2 46 152-197 19-68 (387)
17 1iqp_A RFCS; clamp loader, ext 97.8 2.4E-05 8.1E-10 62.5 6.0 46 152-197 25-70 (327)
18 1sxj_B Activator 1 37 kDa subu 97.8 2.1E-05 7.1E-10 62.7 5.6 46 152-197 21-66 (323)
19 3ec2_A DNA replication protein 97.8 1.6E-05 5.5E-10 58.3 4.2 41 157-197 19-62 (180)
20 3h4m_A Proteasome-activating n 97.7 4.8E-05 1.7E-09 59.8 5.9 46 152-197 17-75 (285)
21 1sxj_D Activator 1 41 kDa subu 97.7 2.9E-05 1E-09 62.8 4.7 46 152-197 37-82 (353)
22 1sxj_E Activator 1 40 kDa subu 97.7 3.9E-05 1.3E-09 62.2 5.1 45 152-196 14-59 (354)
23 2chq_A Replication factor C sm 97.7 6E-05 2E-09 59.9 5.8 46 152-197 17-62 (319)
24 3n70_A Transport activator; si 97.7 4.6E-05 1.6E-09 54.0 4.6 45 153-197 2-48 (145)
25 1in4_A RUVB, holliday junction 97.6 5.3E-05 1.8E-09 61.3 5.1 46 152-197 25-75 (334)
26 2w58_A DNAI, primosome compone 97.6 7E-05 2.4E-09 55.8 5.4 39 159-197 36-78 (202)
27 3cf0_A Transitional endoplasmi 97.6 6.5E-05 2.2E-09 59.8 5.4 46 152-197 15-73 (301)
28 3c8u_A Fructokinase; YP_612366 97.6 3.6E-05 1.2E-09 57.9 3.4 27 170-196 19-45 (208)
29 1sxj_C Activator 1 40 kDa subu 97.6 8.7E-05 3E-09 60.0 5.9 46 152-197 25-70 (340)
30 3b9p_A CG5977-PA, isoform A; A 97.6 0.00013 4.5E-09 57.6 6.7 46 152-197 21-78 (297)
31 3pfi_A Holliday junction ATP-d 97.6 0.00011 3.8E-09 59.1 6.2 47 151-197 28-79 (338)
32 1sxj_A Activator 1 95 kDa subu 97.6 0.00011 3.6E-09 63.1 6.2 47 151-197 38-101 (516)
33 3pvs_A Replication-associated 97.6 7.7E-05 2.6E-09 62.8 5.2 46 152-197 26-74 (447)
34 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00012 4.3E-09 56.5 5.9 46 152-197 6-63 (262)
35 3pxg_A Negative regulator of g 97.5 8.9E-05 3.1E-09 62.8 5.2 46 152-197 180-225 (468)
36 3bos_A Putative DNA replicatio 97.5 0.00012 4.1E-09 55.6 5.5 40 158-197 37-76 (242)
37 1htw_A HI0065; nucleotide-bind 97.5 7.2E-05 2.5E-09 54.0 3.9 27 171-197 31-57 (158)
38 3te6_A Regulatory protein SIR3 97.5 7.1E-05 2.4E-09 60.1 4.2 44 154-197 22-69 (318)
39 1jr3_A DNA polymerase III subu 97.5 0.00014 4.7E-09 59.2 6.0 46 152-197 16-62 (373)
40 1hqc_A RUVB; extended AAA-ATPa 97.5 0.00011 3.8E-09 58.7 5.1 46 152-197 12-62 (324)
41 3aez_A Pantothenate kinase; tr 97.5 7.4E-05 2.5E-09 60.0 4.0 27 171-197 88-114 (312)
42 4eun_A Thermoresistant glucoki 97.5 8.3E-05 2.8E-09 55.5 4.0 26 171-196 27-52 (200)
43 3syl_A Protein CBBX; photosynt 97.5 0.00015 5.3E-09 57.5 5.6 45 153-197 32-91 (309)
44 1z6g_A Guanylate kinase; struc 97.4 7E-05 2.4E-09 56.8 3.3 26 172-197 22-47 (218)
45 1lv7_A FTSH; alpha/beta domain 97.4 0.00017 5.8E-09 55.9 5.4 46 152-197 12-69 (257)
46 3uie_A Adenylyl-sulfate kinase 97.4 0.00011 3.7E-09 54.9 4.1 28 170-197 22-49 (200)
47 2onk_A Molybdate/tungstate ABC 97.4 8.4E-05 2.9E-09 57.4 3.6 25 171-196 23-47 (240)
48 2jeo_A Uridine-cytidine kinase 97.4 9.6E-05 3.3E-09 57.0 3.9 26 171-196 23-48 (245)
49 3tif_A Uncharacterized ABC tra 97.4 8.1E-05 2.8E-09 57.3 3.4 26 171-196 29-54 (235)
50 2pcj_A ABC transporter, lipopr 97.4 7.4E-05 2.5E-09 57.0 3.0 27 171-197 28-54 (224)
51 1odf_A YGR205W, hypothetical 3 97.4 0.00017 5.8E-09 57.3 5.2 27 171-197 29-55 (290)
52 3d8b_A Fidgetin-like protein 1 97.4 0.00029 1E-08 57.4 6.8 46 152-197 84-141 (357)
53 2kjq_A DNAA-related protein; s 97.4 0.0001 3.5E-09 52.6 3.4 26 172-197 35-60 (149)
54 1b0u_A Histidine permease; ABC 97.4 9.7E-05 3.3E-09 57.8 3.4 27 171-197 30-56 (262)
55 1rz3_A Hypothetical protein rb 97.4 0.00021 7.2E-09 53.3 5.2 25 171-195 20-44 (201)
56 3vaa_A Shikimate kinase, SK; s 97.4 0.00013 4.4E-09 54.4 4.0 26 172-197 24-49 (199)
57 2bbw_A Adenylate kinase 4, AK4 97.4 0.00013 4.3E-09 56.3 4.0 26 172-197 26-51 (246)
58 2cbz_A Multidrug resistance-as 97.4 0.0001 3.6E-09 56.7 3.4 27 171-197 29-55 (237)
59 2olj_A Amino acid ABC transpor 97.4 0.00011 3.7E-09 57.5 3.4 27 171-197 48-74 (263)
60 3eie_A Vacuolar protein sortin 97.4 0.00028 9.7E-09 56.6 6.0 46 152-197 18-75 (322)
61 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00027 9.2E-09 56.9 5.7 46 152-197 12-69 (322)
62 2x8a_A Nuclear valosin-contain 97.3 0.00022 7.6E-09 56.1 5.1 46 152-197 10-68 (274)
63 1g6h_A High-affinity branched- 97.3 9.9E-05 3.4E-09 57.5 3.0 27 171-197 31-57 (257)
64 2zu0_C Probable ATP-dependent 97.3 0.00013 4.6E-09 57.1 3.8 26 171-196 44-69 (267)
65 1ofh_A ATP-dependent HSL prote 97.3 0.00025 8.6E-09 56.1 5.4 46 152-197 15-74 (310)
66 1ji0_A ABC transporter; ATP bi 97.3 0.0001 3.5E-09 56.9 3.0 27 171-197 30-56 (240)
67 1vpl_A ABC transporter, ATP-bi 97.3 0.00012 4.2E-09 57.0 3.4 27 171-197 39-65 (256)
68 1sgw_A Putative ABC transporte 97.3 9.2E-05 3.2E-09 56.1 2.6 27 171-197 33-59 (214)
69 3gfo_A Cobalt import ATP-bindi 97.3 0.00012 4E-09 57.7 3.3 26 171-196 32-57 (275)
70 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00012 4.2E-09 56.8 3.3 26 171-196 27-52 (250)
71 1mv5_A LMRA, multidrug resista 97.3 0.00013 4.6E-09 56.3 3.5 27 171-197 26-52 (243)
72 2hf9_A Probable hydrogenase ni 97.3 0.00028 9.6E-09 53.3 5.3 38 160-197 25-62 (226)
73 3co5_A Putative two-component 97.3 6.9E-05 2.4E-09 53.0 1.7 45 153-197 5-51 (143)
74 3b9q_A Chloroplast SRP recepto 97.3 0.00016 5.4E-09 57.8 3.9 26 172-197 99-124 (302)
75 2pze_A Cystic fibrosis transme 97.3 0.00013 4.5E-09 55.8 3.3 27 171-197 32-58 (229)
76 3uk6_A RUVB-like 2; hexameric 97.3 0.00035 1.2E-08 56.8 5.9 46 152-197 44-94 (368)
77 1rj9_A FTSY, signal recognitio 97.3 0.00016 5.5E-09 57.8 3.7 26 172-197 101-126 (304)
78 2ixe_A Antigen peptide transpo 97.3 0.00014 4.9E-09 57.1 3.4 27 171-197 43-69 (271)
79 4g1u_C Hemin import ATP-bindin 97.3 0.00013 4.6E-09 57.1 3.2 26 171-196 35-60 (266)
80 3b85_A Phosphate starvation-in 97.3 0.0001 3.5E-09 55.7 2.4 24 172-195 21-44 (208)
81 2wsm_A Hydrogenase expression/ 97.3 0.00024 8.2E-09 53.5 4.5 42 156-197 13-54 (221)
82 2yz2_A Putative ABC transporte 97.3 0.00015 5E-09 56.9 3.4 26 171-196 31-56 (266)
83 2ghi_A Transport protein; mult 97.3 0.00015 5.1E-09 56.7 3.4 27 171-197 44-70 (260)
84 2ff7_A Alpha-hemolysin translo 97.3 0.00013 4.6E-09 56.5 3.0 27 171-197 33-59 (247)
85 2qi9_C Vitamin B12 import ATP- 97.3 0.00014 4.7E-09 56.5 3.1 27 171-197 24-50 (249)
86 1sq5_A Pantothenate kinase; P- 97.3 0.00019 6.4E-09 57.4 3.9 27 171-197 78-104 (308)
87 3tqc_A Pantothenate kinase; bi 97.3 0.00031 1.1E-08 56.5 5.2 26 172-197 91-116 (321)
88 1qvr_A CLPB protein; coiled co 97.3 0.00021 7.3E-09 64.9 4.7 46 152-197 170-215 (854)
89 2ihy_A ABC transporter, ATP-bi 97.3 0.00014 4.8E-09 57.4 3.1 27 171-197 45-71 (279)
90 2nq2_C Hypothetical ABC transp 97.3 0.00014 4.9E-09 56.5 3.1 27 171-197 29-55 (253)
91 1ixz_A ATP-dependent metallopr 97.3 0.00053 1.8E-08 52.9 6.3 22 176-197 52-73 (254)
92 4fcw_A Chaperone protein CLPB; 97.2 0.00022 7.6E-09 56.6 4.1 45 153-197 18-71 (311)
93 3lnc_A Guanylate kinase, GMP k 97.2 0.00012 4.2E-09 55.8 2.3 25 172-196 26-51 (231)
94 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0004 1.4E-08 62.2 5.9 46 152-197 186-231 (758)
95 2ehv_A Hypothetical protein PH 97.2 0.00022 7.4E-09 54.7 3.6 24 172-195 29-52 (251)
96 2og2_A Putative signal recogni 97.2 0.00024 8.1E-09 58.1 4.0 26 172-197 156-181 (359)
97 3pxi_A Negative regulator of g 97.2 0.00033 1.1E-08 62.7 5.2 46 152-197 180-225 (758)
98 4e22_A Cytidylate kinase; P-lo 97.2 0.00024 8.1E-09 55.1 3.6 25 171-195 25-49 (252)
99 3e70_C DPA, signal recognition 97.2 0.00026 9E-09 57.1 3.9 27 171-197 127-153 (328)
100 2yhs_A FTSY, cell division pro 97.2 0.00046 1.6E-08 58.6 5.5 27 171-197 291-317 (503)
101 2bjv_A PSP operon transcriptio 97.2 0.0003 1E-08 54.7 4.2 45 153-197 7-53 (265)
102 2qp9_X Vacuolar protein sortin 97.2 0.00047 1.6E-08 56.2 5.4 46 152-197 51-108 (355)
103 3vfd_A Spastin; ATPase, microt 97.2 0.00076 2.6E-08 55.6 6.7 47 151-197 114-172 (389)
104 4a74_A DNA repair and recombin 97.2 0.00028 9.6E-09 53.3 3.7 25 172-196 24-48 (231)
105 1iy2_A ATP-dependent metallopr 97.2 0.00053 1.8E-08 53.7 5.4 46 152-197 40-97 (278)
106 2bbs_A Cystic fibrosis transme 97.1 0.00024 8.3E-09 56.3 3.4 27 171-197 62-88 (290)
107 3u61_B DNA polymerase accessor 97.1 0.00062 2.1E-08 54.4 5.8 46 152-197 26-72 (324)
108 2pjz_A Hypothetical protein ST 97.1 0.00024 8.3E-09 55.5 3.1 24 173-196 30-53 (263)
109 2r62_A Cell division protease 97.1 0.00028 9.5E-09 54.9 3.3 46 152-197 11-68 (268)
110 2zan_A Vacuolar protein sortin 97.1 0.00068 2.3E-08 56.9 5.9 46 152-197 134-191 (444)
111 2eyu_A Twitching motility prot 97.1 0.00035 1.2E-08 54.6 3.9 27 171-197 23-49 (261)
112 1d2n_A N-ethylmaleimide-sensit 97.1 0.00089 3E-08 52.2 6.2 27 171-197 62-88 (272)
113 2v9p_A Replication protein E1; 97.1 0.00034 1.2E-08 55.9 3.7 26 171-196 124-149 (305)
114 1gvn_B Zeta; postsegregational 97.1 0.00063 2.2E-08 53.8 5.1 27 171-197 31-57 (287)
115 3tui_C Methionine import ATP-b 97.1 0.00038 1.3E-08 56.9 3.8 27 171-197 52-78 (366)
116 2p5t_B PEZT; postsegregational 97.1 0.00048 1.6E-08 53.3 4.2 27 171-197 30-56 (253)
117 3fvq_A Fe(3+) IONS import ATP- 97.0 0.0004 1.4E-08 56.7 3.7 27 171-197 28-54 (359)
118 4b4t_M 26S protease regulatory 97.0 0.00082 2.8E-08 56.2 5.6 46 152-197 181-239 (434)
119 3nh6_A ATP-binding cassette SU 97.0 0.00026 8.9E-09 56.6 2.5 26 171-196 78-103 (306)
120 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00098 3.4E-08 54.2 5.8 27 170-196 21-47 (359)
121 2px0_A Flagellar biosynthesis 97.0 0.00042 1.4E-08 55.1 3.5 26 172-197 104-129 (296)
122 4b4t_K 26S protease regulatory 97.0 0.00089 3.1E-08 55.9 5.5 46 152-197 172-230 (428)
123 3t15_A Ribulose bisphosphate c 97.0 0.00064 2.2E-08 53.9 4.5 26 172-197 35-60 (293)
124 1l8q_A Chromosomal replication 97.0 0.0011 3.7E-08 53.1 5.9 38 160-197 22-61 (324)
125 1oix_A RAS-related protein RAB 97.0 0.00047 1.6E-08 50.8 3.4 26 172-197 28-53 (191)
126 3hws_A ATP-dependent CLP prote 97.0 0.00099 3.4E-08 54.3 5.7 44 154-197 17-75 (363)
127 2r44_A Uncharacterized protein 97.0 0.00061 2.1E-08 54.7 4.3 44 152-197 27-70 (331)
128 2it1_A 362AA long hypothetical 97.0 0.00049 1.7E-08 56.3 3.8 27 171-197 27-53 (362)
129 2yyz_A Sugar ABC transporter, 97.0 0.00048 1.6E-08 56.3 3.7 27 171-197 27-53 (359)
130 1z47_A CYSA, putative ABC-tran 97.0 0.00042 1.4E-08 56.5 3.3 27 171-197 39-65 (355)
131 1ojl_A Transcriptional regulat 97.0 0.00076 2.6E-08 53.8 4.8 45 153-197 3-49 (304)
132 3fwy_A Light-independent proto 97.0 0.00049 1.7E-08 55.2 3.5 25 171-195 46-70 (314)
133 4b4t_L 26S protease subunit RP 97.0 0.0011 3.7E-08 55.6 5.7 46 152-197 181-239 (437)
134 1tq4_A IIGP1, interferon-induc 97.0 0.00071 2.4E-08 56.3 4.6 26 171-196 67-92 (413)
135 3nbx_X ATPase RAVA; AAA+ ATPas 97.0 0.00068 2.3E-08 57.8 4.6 43 153-197 23-65 (500)
136 1uj2_A Uridine-cytidine kinase 96.9 0.00057 2E-08 52.8 3.8 25 171-195 20-44 (252)
137 1v43_A Sugar-binding transport 96.9 0.00055 1.9E-08 56.2 3.8 27 171-197 35-61 (372)
138 3rlf_A Maltose/maltodextrin im 96.9 0.00055 1.9E-08 56.3 3.8 27 171-197 27-53 (381)
139 1m7g_A Adenylylsulfate kinase; 96.9 0.00071 2.4E-08 50.8 4.1 27 171-197 23-49 (211)
140 2obl_A ESCN; ATPase, hydrolase 96.9 0.0011 3.6E-08 54.0 5.4 27 171-197 69-95 (347)
141 3d31_A Sulfate/molybdate ABC t 96.9 0.00042 1.5E-08 56.3 2.9 27 171-197 24-50 (348)
142 2ce7_A Cell division protein F 96.9 0.0013 4.3E-08 55.8 5.9 46 152-197 16-73 (476)
143 1g29_1 MALK, maltose transport 96.9 0.00051 1.7E-08 56.4 3.3 27 171-197 27-53 (372)
144 3k1j_A LON protease, ATP-depen 96.9 0.00077 2.6E-08 58.9 4.6 44 152-197 41-84 (604)
145 1p9r_A General secretion pathw 96.9 0.00097 3.3E-08 55.6 5.0 28 170-197 164-191 (418)
146 2f6r_A COA synthase, bifunctio 96.9 0.00062 2.1E-08 53.7 3.7 24 171-194 73-96 (281)
147 1oxx_K GLCV, glucose, ABC tran 96.9 0.00038 1.3E-08 56.8 2.3 27 171-197 29-55 (353)
148 1vma_A Cell division protein F 96.9 0.00074 2.5E-08 54.0 3.9 27 171-197 102-128 (306)
149 1g8p_A Magnesium-chelatase 38 96.9 0.00061 2.1E-08 54.9 3.5 46 152-197 24-69 (350)
150 2yv5_A YJEQ protein; hydrolase 96.9 0.001 3.4E-08 53.0 4.6 33 161-197 156-188 (302)
151 3nwj_A ATSK2; P loop, shikimat 96.8 0.0007 2.4E-08 52.5 3.4 25 173-197 48-72 (250)
152 4b4t_J 26S protease regulatory 96.8 0.0013 4.4E-08 54.4 5.2 46 152-197 148-206 (405)
153 3hu3_A Transitional endoplasmi 96.8 0.0014 4.8E-08 55.7 5.6 46 152-197 204-262 (489)
154 1um8_A ATP-dependent CLP prote 96.8 0.0016 5.5E-08 53.2 5.7 25 173-197 72-96 (376)
155 1ypw_A Transitional endoplasmi 96.8 0.00072 2.4E-08 61.0 3.9 46 152-197 204-262 (806)
156 3kta_A Chromosome segregation 96.8 0.00075 2.6E-08 49.2 3.3 22 174-195 27-48 (182)
157 3umf_A Adenylate kinase; rossm 96.8 0.001 3.4E-08 50.5 4.1 27 171-197 27-53 (217)
158 1n0w_A DNA repair protein RAD5 96.8 0.001 3.5E-08 50.6 4.0 25 172-196 23-47 (243)
159 3ozx_A RNAse L inhibitor; ATP 96.8 0.00074 2.5E-08 58.2 3.5 27 171-197 23-49 (538)
160 3jvv_A Twitching mobility prot 96.8 0.0011 3.7E-08 54.2 4.3 27 171-197 121-147 (356)
161 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00095 3.2E-08 50.3 3.8 35 160-196 11-46 (235)
162 3gd7_A Fusion complex of cysti 96.8 0.00085 2.9E-08 55.4 3.7 26 171-196 45-70 (390)
163 3tlx_A Adenylate kinase 2; str 96.8 0.0011 3.9E-08 50.9 4.2 27 171-197 27-53 (243)
164 3p32_A Probable GTPase RV1496/ 96.8 0.0018 6.1E-08 52.8 5.5 36 161-196 65-102 (355)
165 2z4s_A Chromosomal replication 96.8 0.0015 5.1E-08 54.8 5.2 38 160-197 116-154 (440)
166 1lw7_A Transcriptional regulat 96.8 0.00078 2.7E-08 55.1 3.3 25 173-197 170-194 (365)
167 2c9o_A RUVB-like 1; hexameric 96.8 0.0019 6.4E-08 54.4 5.7 46 152-197 37-87 (456)
168 3m6a_A ATP-dependent protease 96.8 0.0019 6.4E-08 55.7 5.8 46 152-197 81-132 (543)
169 1svm_A Large T antigen; AAA+ f 96.7 0.001 3.4E-08 54.7 3.8 27 171-197 167-193 (377)
170 4b4t_H 26S protease regulatory 96.7 0.0016 5.6E-08 54.7 5.1 45 153-197 210-267 (467)
171 2qm8_A GTPase/ATPase; G protei 96.7 0.0012 4E-08 53.5 4.0 26 171-196 53-78 (337)
172 1yqt_A RNAse L inhibitor; ATP- 96.7 0.00099 3.4E-08 57.4 3.7 26 172-197 46-71 (538)
173 2qag_B Septin-6, protein NEDD5 96.7 0.00079 2.7E-08 56.2 2.9 25 172-196 39-65 (427)
174 4eaq_A DTMP kinase, thymidylat 96.7 0.0024 8.3E-08 48.7 5.4 26 172-197 25-50 (229)
175 1yqt_A RNAse L inhibitor; ATP- 96.7 0.001 3.5E-08 57.3 3.6 26 172-197 311-336 (538)
176 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00095 3.2E-08 56.3 3.3 27 171-197 136-162 (460)
177 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0023 7.7E-08 54.6 5.6 46 152-197 31-88 (499)
178 2ged_A SR-beta, signal recogni 96.7 0.0026 8.9E-08 46.5 5.4 25 172-196 47-71 (193)
179 1u0l_A Probable GTPase ENGC; p 96.7 0.0015 5E-08 52.0 4.2 34 161-197 160-193 (301)
180 1zu4_A FTSY; GTPase, signal re 96.7 0.0013 4.3E-08 52.9 3.9 27 171-197 103-129 (320)
181 2ewv_A Twitching motility prot 96.7 0.0013 4.3E-08 54.1 3.9 27 171-197 134-160 (372)
182 1cr0_A DNA primase/helicase; R 96.7 0.0013 4.5E-08 51.9 3.9 26 172-197 34-59 (296)
183 3j16_B RLI1P; ribosome recycli 96.7 0.0011 3.9E-08 57.8 3.7 27 171-197 101-127 (608)
184 2gza_A Type IV secretion syste 96.6 0.00099 3.4E-08 54.5 3.1 27 171-197 173-199 (361)
185 4b4t_I 26S protease regulatory 96.6 0.0025 8.5E-08 53.1 5.5 45 153-197 183-240 (437)
186 3bk7_A ABC transporter ATP-bin 96.6 0.0012 4E-08 57.7 3.6 26 172-197 381-406 (607)
187 1pui_A ENGB, probable GTP-bind 96.6 0.00064 2.2E-08 50.6 1.7 26 171-196 24-49 (210)
188 3ozx_A RNAse L inhibitor; ATP 96.6 0.0011 3.8E-08 57.1 3.3 26 172-197 293-318 (538)
189 1ls1_A Signal recognition part 96.6 0.0015 5.1E-08 51.9 3.8 26 172-197 97-122 (295)
190 2rcn_A Probable GTPase ENGC; Y 96.6 0.0021 7E-08 52.5 4.6 26 172-197 214-239 (358)
191 3bk7_A ABC transporter ATP-bin 96.6 0.0013 4.3E-08 57.5 3.4 26 172-197 116-141 (607)
192 1g41_A Heat shock protein HSLU 96.6 0.0022 7.7E-08 53.7 4.7 46 152-197 15-74 (444)
193 3euj_A Chromosome partition pr 96.5 0.0015 5.1E-08 55.4 3.7 26 171-197 28-53 (483)
194 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.001 3.5E-08 53.7 2.5 26 172-197 170-195 (330)
195 1nlf_A Regulatory protein REPA 96.5 0.0016 5.6E-08 51.0 3.6 26 172-197 29-54 (279)
196 2www_A Methylmalonic aciduria 96.5 0.0019 6.6E-08 52.5 3.9 25 172-196 73-97 (349)
197 3j16_B RLI1P; ribosome recycli 96.5 0.0016 5.5E-08 56.8 3.6 24 174-197 379-402 (608)
198 3dm5_A SRP54, signal recogniti 96.5 0.0049 1.7E-07 51.6 6.4 26 172-197 99-124 (443)
199 2dpy_A FLII, flagellum-specifi 96.5 0.0018 6.1E-08 54.3 3.7 27 171-197 155-181 (438)
200 2qgz_A Helicase loader, putati 96.5 0.0033 1.1E-07 50.2 5.0 40 158-197 134-176 (308)
201 3b60_A Lipid A export ATP-bind 96.4 0.0017 5.7E-08 56.5 3.4 27 171-197 367-393 (582)
202 3kl4_A SRP54, signal recogniti 96.4 0.0045 1.5E-07 51.7 5.7 26 172-197 96-121 (433)
203 3b5x_A Lipid A export ATP-bind 96.4 0.0018 6.2E-08 56.2 3.5 27 171-197 367-393 (582)
204 1f6b_A SAR1; gtpases, N-termin 96.4 0.0023 8E-08 47.3 3.6 26 171-196 23-48 (198)
205 1svi_A GTP-binding protein YSX 96.4 0.0021 7.3E-08 46.9 3.4 26 171-196 21-46 (195)
206 3end_A Light-independent proto 96.4 0.0022 7.4E-08 50.9 3.5 27 171-197 39-65 (307)
207 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0029 9.9E-08 44.9 3.8 22 173-194 23-44 (149)
208 1tue_A Replication protein E1; 96.4 0.0045 1.5E-07 46.5 4.9 37 161-197 45-82 (212)
209 3upu_A ATP-dependent DNA helic 96.4 0.0051 1.7E-07 51.8 5.9 41 156-197 29-69 (459)
210 3zvl_A Bifunctional polynucleo 96.4 0.0024 8.1E-08 53.2 3.8 27 171-197 256-282 (416)
211 4gzl_A RAS-related C3 botulinu 96.4 0.0024 8.4E-08 47.4 3.5 35 162-196 19-53 (204)
212 3pqc_A Probable GTP-binding pr 96.3 0.0025 8.5E-08 46.4 3.4 25 172-196 22-46 (195)
213 2oap_1 GSPE-2, type II secreti 96.3 0.0034 1.2E-07 53.6 4.6 26 172-197 259-284 (511)
214 2b6h_A ADP-ribosylation factor 96.3 0.0027 9.2E-08 46.7 3.5 29 168-196 24-52 (192)
215 3a8t_A Adenylate isopentenyltr 96.3 0.0029 9.9E-08 51.1 3.8 26 172-197 39-64 (339)
216 2p67_A LAO/AO transport system 96.3 0.0028 9.4E-08 51.3 3.7 26 171-196 54-79 (341)
217 2qag_C Septin-7; cell cycle, c 96.3 0.0019 6.6E-08 53.8 2.8 22 176-197 34-55 (418)
218 2qag_A Septin-2, protein NEDD5 96.3 0.0018 6.3E-08 52.9 2.6 23 174-196 38-60 (361)
219 3cr8_A Sulfate adenylyltranfer 96.3 0.0019 6.6E-08 55.7 2.8 27 171-197 367-393 (552)
220 2xxa_A Signal recognition part 96.2 0.0029 9.9E-08 53.0 3.7 26 172-197 99-124 (433)
221 1pzn_A RAD51, DNA repair and r 96.2 0.0027 9.4E-08 51.6 3.4 37 160-197 119-155 (349)
222 2yl4_A ATP-binding cassette SU 96.2 0.0016 5.6E-08 56.7 2.2 27 171-197 368-394 (595)
223 1m2o_B GTP-binding protein SAR 96.2 0.0027 9.2E-08 46.6 3.0 25 172-196 22-46 (190)
224 3bh0_A DNAB-like replicative h 96.2 0.0076 2.6E-07 48.2 5.9 46 160-210 57-102 (315)
225 2j37_W Signal recognition part 96.2 0.0054 1.8E-07 52.3 5.2 26 172-197 100-125 (504)
226 2oil_A CATX-8, RAS-related pro 96.2 0.0028 9.6E-08 46.3 3.0 26 172-197 24-49 (193)
227 3cf2_A TER ATPase, transitiona 96.2 0.0055 1.9E-07 55.1 5.4 46 152-197 204-262 (806)
228 3ice_A Transcription terminati 96.2 0.0085 2.9E-07 49.4 5.9 34 163-196 163-197 (422)
229 3lxx_A GTPase IMAP family memb 96.2 0.0034 1.2E-07 47.9 3.5 26 172-197 28-53 (239)
230 1t9h_A YLOQ, probable GTPase E 96.2 0.0012 4.2E-08 52.7 1.0 26 172-197 172-197 (307)
231 3qf4_B Uncharacterized ABC tra 96.1 0.0021 7.2E-08 56.0 2.4 27 171-197 379-405 (598)
232 2v3c_C SRP54, signal recogniti 96.1 0.0019 6.4E-08 54.1 2.0 26 172-197 98-123 (432)
233 2fg5_A RAB-22B, RAS-related pr 96.1 0.0031 1.1E-07 46.2 3.0 25 172-196 22-46 (192)
234 3dz8_A RAS-related protein RAB 96.1 0.0035 1.2E-07 45.8 3.3 26 172-197 22-47 (191)
235 4a82_A Cystic fibrosis transme 96.1 0.0018 6.1E-08 56.3 1.8 27 171-197 365-391 (578)
236 2dr3_A UPF0273 protein PH0284; 96.1 0.0042 1.4E-07 47.2 3.8 33 161-195 12-45 (247)
237 1p5z_B DCK, deoxycytidine kina 96.1 0.0023 7.8E-08 49.7 2.2 27 171-197 22-48 (263)
238 1mky_A Probable GTP-binding pr 96.1 0.0065 2.2E-07 50.9 5.1 43 155-197 151-204 (439)
239 2ffh_A Protein (FFH); SRP54, s 96.1 0.0053 1.8E-07 51.2 4.4 26 172-197 97-122 (425)
240 2atv_A RERG, RAS-like estrogen 96.1 0.0048 1.6E-07 45.3 3.7 26 171-196 26-51 (196)
241 1j8m_F SRP54, signal recogniti 96.1 0.0026 8.9E-08 50.6 2.4 26 172-197 97-122 (297)
242 3cbq_A GTP-binding protein REM 96.0 0.0028 9.7E-08 46.7 2.4 23 172-194 22-44 (195)
243 3oes_A GTPase rhebl1; small GT 96.0 0.0038 1.3E-07 46.0 3.1 26 172-197 23-48 (201)
244 1gwn_A RHO-related GTP-binding 96.0 0.0037 1.3E-07 46.6 3.0 25 172-196 27-51 (205)
245 2qu8_A Putative nucleolar GTP- 96.0 0.0046 1.6E-07 46.7 3.6 26 171-196 27-52 (228)
246 1zd9_A ADP-ribosylation factor 96.0 0.0039 1.3E-07 45.5 3.0 25 172-196 21-45 (188)
247 2gf9_A RAS-related protein RAB 96.0 0.0039 1.3E-07 45.4 3.0 25 172-196 21-45 (189)
248 2o5v_A DNA replication and rep 96.0 0.0048 1.6E-07 50.4 3.8 22 174-195 27-48 (359)
249 2iw3_A Elongation factor 3A; a 96.0 0.0041 1.4E-07 57.0 3.7 25 171-195 459-483 (986)
250 3reg_A RHO-like small GTPase; 96.0 0.0041 1.4E-07 45.5 3.0 26 172-197 22-47 (194)
251 2ew1_A RAS-related protein RAB 96.0 0.0042 1.4E-07 46.1 3.1 25 172-196 25-49 (201)
252 3qf4_A ABC transporter, ATP-bi 96.0 0.0027 9.3E-08 55.2 2.3 27 171-197 367-393 (587)
253 2o52_A RAS-related protein RAB 96.0 0.0039 1.3E-07 46.0 2.9 25 172-196 24-48 (200)
254 2zr9_A Protein RECA, recombina 96.0 0.0047 1.6E-07 50.2 3.6 36 160-197 48-85 (349)
255 2p5s_A RAS and EF-hand domain 96.0 0.0041 1.4E-07 45.8 3.0 26 171-196 26-51 (199)
256 2j1l_A RHO-related GTP-binding 95.9 0.0044 1.5E-07 46.3 3.0 25 172-196 33-57 (214)
257 2fv8_A H6, RHO-related GTP-bin 95.9 0.0047 1.6E-07 45.8 3.1 25 172-196 24-48 (207)
258 3qkt_A DNA double-strand break 95.9 0.0057 2E-07 49.4 3.8 23 172-194 22-44 (339)
259 2il1_A RAB12; G-protein, GDP, 95.9 0.0038 1.3E-07 45.7 2.4 24 173-196 26-49 (192)
260 3hr8_A Protein RECA; alpha and 95.9 0.005 1.7E-07 50.2 3.3 26 172-197 60-85 (356)
261 2qtf_A Protein HFLX, GTP-bindi 95.9 0.0047 1.6E-07 50.5 3.1 26 172-197 178-203 (364)
262 2xtp_A GTPase IMAP family memb 95.9 0.0063 2.2E-07 46.9 3.7 25 172-196 21-45 (260)
263 1tf7_A KAIC; homohexamer, hexa 95.8 0.0051 1.8E-07 52.7 3.5 22 172-193 38-59 (525)
264 1w1w_A Structural maintenance 95.8 0.0056 1.9E-07 51.0 3.7 24 172-195 25-48 (430)
265 2iw3_A Elongation factor 3A; a 95.8 0.003 1E-07 57.8 2.1 27 171-197 697-723 (986)
266 3qks_A DNA double-strand break 95.8 0.0074 2.5E-07 45.0 3.8 22 173-194 23-44 (203)
267 2hup_A RAS-related protein RAB 95.8 0.0056 1.9E-07 45.3 3.1 25 172-196 28-52 (201)
268 3pxi_A Negative regulator of g 95.8 0.011 3.8E-07 52.9 5.5 45 153-197 492-545 (758)
269 3lda_A DNA repair protein RAD5 95.8 0.007 2.4E-07 50.1 3.9 23 172-194 177-199 (400)
270 2gco_A H9, RHO-related GTP-bin 95.8 0.0056 1.9E-07 45.2 3.0 25 172-196 24-48 (201)
271 4dhe_A Probable GTP-binding pr 95.8 0.0034 1.2E-07 47.0 1.9 27 171-197 27-53 (223)
272 3cnl_A YLQF, putative uncharac 95.8 0.011 3.7E-07 46.0 4.7 35 161-197 88-123 (262)
273 3def_A T7I23.11 protein; chlor 95.7 0.012 4.1E-07 45.5 4.9 26 172-197 35-60 (262)
274 3lv8_A DTMP kinase, thymidylat 95.7 0.0085 2.9E-07 45.9 3.9 26 172-197 26-51 (236)
275 2f7s_A C25KG, RAS-related prot 95.7 0.0058 2E-07 45.5 2.9 25 172-196 24-48 (217)
276 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.0079 2.7E-07 49.1 3.8 21 174-194 24-44 (365)
277 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.008 2.7E-07 48.2 3.7 25 172-196 122-146 (331)
278 3q3j_B RHO-related GTP-binding 95.7 0.0065 2.2E-07 45.4 3.0 25 172-196 26-50 (214)
279 3szr_A Interferon-induced GTP- 95.6 0.0041 1.4E-07 54.3 2.1 25 172-196 44-68 (608)
280 1ypw_A Transitional endoplasmi 95.6 0.005 1.7E-07 55.6 2.6 46 152-197 477-535 (806)
281 2g3y_A GTP-binding protein GEM 95.6 0.007 2.4E-07 45.5 3.0 24 172-195 36-59 (211)
282 4aby_A DNA repair protein RECN 95.6 0.0026 8.9E-08 52.6 0.6 21 175-195 62-82 (415)
283 1e69_A Chromosome segregation 95.6 0.0052 1.8E-07 49.2 2.4 21 174-194 25-45 (322)
284 3v9p_A DTMP kinase, thymidylat 95.6 0.0068 2.3E-07 46.2 2.9 26 172-197 24-49 (227)
285 1h65_A Chloroplast outer envel 95.6 0.014 4.7E-07 45.4 4.7 26 172-197 38-63 (270)
286 1g8f_A Sulfate adenylyltransfe 95.6 0.018 6.2E-07 49.1 5.7 27 171-197 393-419 (511)
287 2z43_A DNA repair and recombin 95.6 0.017 5.7E-07 46.3 5.3 25 172-196 106-130 (324)
288 3th5_A RAS-related C3 botulinu 94.5 0.0022 7.5E-08 47.4 0.0 29 168-196 25-53 (204)
289 3f9v_A Minichromosome maintena 95.5 0.006 2E-07 53.2 2.7 44 154-197 297-351 (595)
290 1qvr_A CLPB protein; coiled co 95.5 0.0091 3.1E-07 54.2 4.0 45 153-197 559-612 (854)
291 2e87_A Hypothetical protein PH 95.5 0.009 3.1E-07 48.6 3.6 26 171-196 165-190 (357)
292 1jwy_B Dynamin A GTPase domain 95.5 0.013 4.3E-07 46.5 4.4 26 172-197 23-48 (315)
293 2qmh_A HPR kinase/phosphorylas 95.5 0.0093 3.2E-07 44.5 3.2 25 172-196 33-57 (205)
294 2axn_A 6-phosphofructo-2-kinas 95.5 0.011 3.9E-07 50.5 4.2 27 171-197 33-59 (520)
295 1qhl_A Protein (cell division 95.4 0.0012 4E-08 50.5 -1.8 23 175-197 29-51 (227)
296 1udx_A The GTP-binding protein 95.4 0.0065 2.2E-07 50.5 2.4 25 172-196 156-180 (416)
297 1r6b_X CLPA protein; AAA+, N-t 95.4 0.02 7E-07 51.1 5.7 45 153-197 459-512 (758)
298 1wb9_A DNA mismatch repair pro 95.4 0.011 3.7E-07 53.3 3.9 26 171-196 605-630 (800)
299 1tf7_A KAIC; homohexamer, hexa 95.4 0.011 3.7E-07 50.7 3.7 27 171-197 279-305 (525)
300 2r6a_A DNAB helicase, replicat 95.3 0.017 5.8E-07 48.5 4.7 36 160-197 192-227 (454)
301 1puj_A YLQF, conserved hypothe 95.3 0.023 7.9E-07 44.6 5.2 26 172-197 119-144 (282)
302 1bif_A 6-phosphofructo-2-kinas 95.3 0.014 4.7E-07 49.3 4.1 27 171-197 37-63 (469)
303 2x77_A ADP-ribosylation factor 95.2 0.0095 3.2E-07 43.3 2.6 24 172-195 21-44 (189)
304 3ux8_A Excinuclease ABC, A sub 95.2 0.0057 2E-07 54.0 1.6 24 171-194 346-369 (670)
305 3ux8_A Excinuclease ABC, A sub 95.2 0.0083 2.8E-07 52.9 2.6 20 171-190 42-61 (670)
306 1ewq_A DNA mismatch repair pro 95.2 0.012 3.9E-07 52.8 3.5 24 173-196 576-599 (765)
307 1u94_A RECA protein, recombina 95.2 0.011 3.9E-07 48.1 3.2 36 160-197 50-87 (356)
308 3g5u_A MCG1178, multidrug resi 95.2 0.01 3.6E-07 56.1 3.3 27 171-197 1057-1083(1284)
309 2hjg_A GTP-binding protein ENG 95.2 0.027 9.3E-07 47.0 5.5 43 155-197 150-199 (436)
310 1a5t_A Delta prime, HOLB; zinc 95.2 0.023 8E-07 45.6 5.0 40 158-197 8-48 (334)
311 3l0o_A Transcription terminati 95.1 0.037 1.3E-06 45.6 5.9 37 161-197 162-199 (427)
312 1x6v_B Bifunctional 3'-phospho 95.1 0.017 5.6E-07 50.6 4.0 26 172-197 51-76 (630)
313 1m8p_A Sulfate adenylyltransfe 95.0 0.018 6.2E-07 49.9 4.1 26 172-197 395-420 (573)
314 1v5w_A DMC1, meiotic recombina 95.0 0.03 1E-06 45.2 5.2 25 172-196 121-145 (343)
315 3fkq_A NTRC-like two-domain pr 94.9 0.018 6.2E-07 47.1 3.6 26 171-196 141-167 (373)
316 1u0j_A DNA replication protein 94.9 0.035 1.2E-06 43.2 5.0 37 160-196 89-127 (267)
317 1xp8_A RECA protein, recombina 94.9 0.019 6.3E-07 47.0 3.6 36 160-197 61-98 (366)
318 3thx_B DNA mismatch repair pro 94.9 0.012 4.3E-07 53.6 2.7 24 171-194 671-694 (918)
319 2ohf_A Protein OLA1, GTP-bindi 94.8 0.016 5.5E-07 47.8 3.0 25 172-196 21-45 (396)
320 2aka_B Dynamin-1; fusion prote 94.8 0.018 6.2E-07 45.1 3.3 26 172-197 25-50 (299)
321 3thx_A DNA mismatch repair pro 94.8 0.018 6.2E-07 52.7 3.6 23 171-193 660-682 (934)
322 3g5u_A MCG1178, multidrug resi 94.8 0.014 4.8E-07 55.3 2.9 27 171-197 414-440 (1284)
323 1sky_E F1-ATPase, F1-ATP synth 94.8 0.028 9.6E-07 47.4 4.4 39 155-197 137-175 (473)
324 3bgw_A DNAB-like replicative h 94.7 0.056 1.9E-06 45.3 6.1 36 160-197 186-221 (444)
325 2gks_A Bifunctional SAT/APS ki 94.7 0.046 1.6E-06 47.0 5.7 27 171-197 370-396 (546)
326 4a1f_A DNAB helicase, replicat 94.5 0.04 1.4E-06 44.5 4.6 36 160-197 35-70 (338)
327 3k9g_A PF-32 protein; ssgcid, 94.5 0.022 7.6E-07 44.0 3.1 27 171-197 25-52 (267)
328 2o8b_B DNA mismatch repair pro 94.5 0.022 7.7E-07 52.6 3.5 21 173-193 789-809 (1022)
329 3ug7_A Arsenical pump-driving 94.5 0.041 1.4E-06 44.6 4.7 27 170-196 22-49 (349)
330 3t34_A Dynamin-related protein 94.5 0.025 8.6E-07 45.9 3.4 25 172-196 33-57 (360)
331 2q6t_A DNAB replication FORK h 94.4 0.038 1.3E-06 46.2 4.6 36 160-197 189-224 (444)
332 2oze_A ORF delta'; para, walke 94.3 0.021 7.3E-07 44.8 2.7 26 172-197 33-61 (298)
333 2ck3_D ATP synthase subunit be 94.3 0.074 2.5E-06 44.8 6.0 38 171-210 151-188 (482)
334 3q5d_A Atlastin-1; G protein, 94.3 0.041 1.4E-06 46.2 4.4 39 158-196 50-90 (447)
335 3ec1_A YQEH GTPase; atnos1, at 94.3 0.052 1.8E-06 44.3 5.0 39 155-196 147-185 (369)
336 4f4c_A Multidrug resistance pr 94.3 0.024 8.3E-07 53.8 3.4 27 171-197 442-468 (1321)
337 4f4c_A Multidrug resistance pr 94.3 0.013 4.6E-07 55.6 1.7 27 171-197 1103-1129(1321)
338 2i1q_A DNA repair and recombin 94.3 0.036 1.2E-06 44.2 3.9 25 172-196 97-121 (322)
339 4dcu_A GTP-binding protein ENG 94.3 0.027 9.3E-07 47.3 3.3 25 172-196 22-46 (456)
340 3auy_A DNA double-strand break 94.2 0.035 1.2E-06 45.3 3.8 23 172-194 24-46 (371)
341 1f5n_A Interferon-induced guan 94.1 0.036 1.2E-06 48.2 3.7 28 170-197 35-62 (592)
342 3e1s_A Exodeoxyribonuclease V, 94.0 0.052 1.8E-06 47.0 4.7 26 172-197 203-228 (574)
343 2wkq_A NPH1-1, RAS-related C3 94.0 0.075 2.6E-06 42.0 5.3 26 171-196 153-178 (332)
344 3ez2_A Plasmid partition prote 94.0 0.032 1.1E-06 45.9 3.2 26 171-196 106-132 (398)
345 3o47_A ADP-ribosylation factor 94.0 0.034 1.2E-06 44.6 3.1 24 173-196 165-188 (329)
346 2vf7_A UVRA2, excinuclease ABC 93.9 0.012 3.9E-07 53.3 0.4 25 171-195 521-546 (842)
347 4ag6_A VIRB4 ATPase, type IV s 93.9 0.038 1.3E-06 45.3 3.4 25 173-197 35-59 (392)
348 2x2e_A Dynamin-1; nitration, h 93.9 0.041 1.4E-06 44.5 3.6 25 172-196 30-54 (353)
349 3cf2_A TER ATPase, transitiona 93.8 0.072 2.5E-06 47.9 5.3 46 152-197 477-535 (806)
350 2zts_A Putative uncharacterize 93.8 0.044 1.5E-06 41.5 3.5 23 172-194 29-51 (251)
351 3h2y_A GTPase family protein; 93.8 0.068 2.3E-06 43.6 4.8 40 155-197 145-184 (368)
352 2ygr_A Uvrabc system protein A 93.8 0.02 6.7E-07 52.5 1.6 23 171-193 666-688 (993)
353 2qpt_A EH domain-containing pr 93.8 0.039 1.3E-06 47.6 3.4 26 172-197 64-89 (550)
354 1fx0_B ATP synthase beta chain 93.8 0.064 2.2E-06 45.4 4.5 38 171-210 163-200 (498)
355 3io5_A Recombination and repai 93.7 0.06 2E-06 43.1 4.1 23 175-197 30-52 (333)
356 3cio_A ETK, tyrosine-protein k 93.7 0.091 3.1E-06 41.5 5.3 28 170-197 101-129 (299)
357 3dpu_A RAB family protein; roc 93.6 0.079 2.7E-06 45.4 5.0 24 173-196 41-64 (535)
358 3bfv_A CAPA1, CAPB2, membrane 93.6 0.096 3.3E-06 40.8 5.0 28 170-197 79-107 (271)
359 3llm_A ATP-dependent RNA helic 93.5 0.055 1.9E-06 41.0 3.6 31 162-194 67-97 (235)
360 3geh_A MNME, tRNA modification 93.5 0.049 1.7E-06 45.9 3.4 23 175-197 226-248 (462)
361 3gee_A MNME, tRNA modification 93.5 0.12 4.1E-06 43.7 5.8 22 175-196 235-256 (476)
362 2r6f_A Excinuclease ABC subuni 93.3 0.019 6.5E-07 52.5 0.7 23 171-193 648-670 (972)
363 3l0i_B RAS-related protein RAB 93.3 0.0073 2.5E-07 44.4 -1.8 24 172-195 32-55 (199)
364 1zcb_A G alpha I/13; GTP-bindi 93.2 0.066 2.3E-06 43.6 3.7 22 172-193 32-53 (362)
365 3la6_A Tyrosine-protein kinase 93.0 0.14 4.8E-06 40.2 5.2 29 169-197 88-117 (286)
366 1of1_A Thymidine kinase; trans 93.0 0.055 1.9E-06 44.3 2.9 26 172-197 48-73 (376)
367 4dcu_A GTP-binding protein ENG 92.9 0.13 4.6E-06 43.0 5.3 42 155-196 170-218 (456)
368 3ez9_A Para; DNA binding, wing 92.9 0.031 1.1E-06 46.1 1.3 26 171-196 109-135 (403)
369 4ido_A Atlastin-1; GTPase, GTP 92.8 0.1 3.4E-06 43.8 4.3 38 158-195 50-89 (457)
370 3vkw_A Replicase large subunit 92.8 0.063 2.2E-06 44.9 3.1 25 171-195 159-183 (446)
371 3vr4_A V-type sodium ATPase ca 92.8 0.19 6.4E-06 43.4 6.0 27 171-197 230-256 (600)
372 3vr4_D V-type sodium ATPase su 92.8 0.11 3.8E-06 43.5 4.5 26 172-197 150-175 (465)
373 1lnz_A SPO0B-associated GTP-bi 92.8 0.047 1.6E-06 44.1 2.2 24 173-196 158-181 (342)
374 1q57_A DNA primase/helicase; d 92.7 0.1 3.5E-06 44.3 4.3 35 161-197 232-266 (503)
375 2j69_A Bacterial dynamin-like 92.4 0.12 4.2E-06 45.7 4.5 27 171-197 67-93 (695)
376 1zun_B Sulfate adenylate trans 92.2 0.064 2.2E-06 44.7 2.5 25 172-196 23-47 (434)
377 3gqb_A V-type ATP synthase alp 92.2 0.19 6.5E-06 43.1 5.2 27 171-197 219-245 (578)
378 1w36_D RECD, exodeoxyribonucle 92.1 0.094 3.2E-06 45.7 3.4 26 172-197 163-188 (608)
379 3gqb_B V-type ATP synthase bet 92.0 0.11 3.8E-06 43.6 3.5 27 171-197 145-171 (464)
380 3pih_A Uvrabc system protein A 92.0 0.073 2.5E-06 48.6 2.6 20 172-191 609-628 (916)
381 1ko7_A HPR kinase/phosphatase; 92.0 0.1 3.5E-06 41.6 3.1 25 172-196 143-167 (314)
382 3lvq_E ARF-GAP with SH3 domain 91.9 0.093 3.2E-06 44.4 3.0 26 172-197 321-346 (497)
383 4ad8_A DNA repair protein RECN 91.8 0.043 1.5E-06 46.8 0.9 24 172-195 59-82 (517)
384 3mfy_A V-type ATP synthase alp 91.8 0.17 5.8E-06 43.5 4.4 27 171-197 225-251 (588)
385 2qe7_A ATP synthase subunit al 90.8 0.3 1E-05 41.4 5.0 27 171-197 160-187 (502)
386 2c61_A A-type ATP synthase non 90.1 0.19 6.4E-06 42.3 3.2 27 171-197 150-176 (469)
387 3cmu_A Protein RECA, recombina 90.1 0.35 1.2E-05 47.7 5.4 36 160-197 370-407 (2050)
388 2r9v_A ATP synthase subunit al 90.0 0.3 1E-05 41.4 4.4 27 171-197 173-200 (515)
389 3e2i_A Thymidine kinase; Zn-bi 89.9 0.46 1.6E-05 35.7 4.9 27 171-197 26-53 (219)
390 3oaa_A ATP synthase subunit al 89.9 0.35 1.2E-05 41.0 4.6 27 171-197 160-187 (513)
391 2gk6_A Regulator of nonsense t 89.8 0.19 6.6E-06 43.9 3.2 24 174-197 196-219 (624)
392 1ny5_A Transcriptional regulat 89.6 0.4 1.4E-05 39.2 4.8 43 154-197 139-184 (387)
393 4a9a_A Ribosome-interacting GT 89.5 0.2 6.9E-06 41.0 2.9 26 171-196 70-95 (376)
394 3izq_1 HBS1P, elongation facto 89.4 0.19 6.6E-06 43.8 2.9 25 172-196 166-190 (611)
395 4b3f_X DNA-binding protein smu 89.4 0.41 1.4E-05 41.9 5.0 33 161-195 195-228 (646)
396 1knx_A Probable HPR(Ser) kinas 89.4 0.24 8E-06 39.5 3.1 24 172-195 146-169 (312)
397 3p26_A Elongation factor 1 alp 89.3 0.19 6.4E-06 42.5 2.6 26 171-196 31-56 (483)
398 3mca_A HBS1, elongation factor 89.2 0.29 9.8E-06 42.6 3.8 24 172-195 176-199 (592)
399 3czq_A Putative polyphosphate 88.9 0.59 2E-05 37.0 5.0 26 172-197 85-110 (304)
400 1xzp_A Probable tRNA modificat 88.8 0.083 2.9E-06 44.7 0.1 24 174-197 244-267 (482)
401 1fx0_A ATP synthase alpha chai 88.5 0.25 8.6E-06 41.9 2.8 27 171-197 161-188 (507)
402 3qq5_A Small GTP-binding prote 88.4 0.053 1.8E-06 45.2 -1.3 26 171-196 32-57 (423)
403 1r5b_A Eukaryotic peptide chai 88.4 0.18 6E-06 42.5 1.9 25 171-195 41-65 (467)
404 3cmu_A Protein RECA, recombina 88.4 0.55 1.9E-05 46.4 5.4 36 160-197 1068-1105(2050)
405 1ihu_A Arsenical pump-driving 88.4 0.49 1.7E-05 40.9 4.7 37 161-197 315-351 (589)
406 2ius_A DNA translocase FTSK; n 88.3 0.63 2.1E-05 39.7 5.1 25 172-196 166-190 (512)
407 3dzd_A Transcriptional regulat 88.2 0.58 2E-05 38.0 4.8 44 153-197 130-176 (368)
408 2xau_A PRE-mRNA-splicing facto 88.1 0.36 1.2E-05 43.3 3.7 33 161-195 99-131 (773)
409 3cmw_A Protein RECA, recombina 88.1 0.33 1.1E-05 47.1 3.7 26 172-197 1081-1106(1706)
410 2wjy_A Regulator of nonsense t 88.0 0.31 1E-05 43.9 3.2 25 173-197 371-395 (800)
411 2ck3_A ATP synthase subunit al 87.0 0.48 1.7E-05 40.2 3.7 27 171-197 160-187 (510)
412 1e9r_A Conjugal transfer prote 86.9 0.44 1.5E-05 39.4 3.4 26 172-197 52-77 (437)
413 1ii2_A Phosphoenolpyruvate car 86.7 0.41 1.4E-05 40.8 3.1 20 172-191 212-231 (524)
414 2olr_A Phosphoenolpyruvate car 86.3 0.44 1.5E-05 40.7 3.1 21 172-192 240-260 (540)
415 1j3b_A ATP-dependent phosphoen 86.1 0.37 1.3E-05 41.1 2.5 21 172-192 224-244 (529)
416 3vqt_A RF-3, peptide chain rel 85.8 0.51 1.7E-05 40.6 3.3 23 172-194 30-52 (548)
417 2xzl_A ATP-dependent helicase 85.5 0.49 1.7E-05 42.6 3.1 23 173-195 375-397 (802)
418 1ytm_A Phosphoenolpyruvate car 85.3 0.46 1.6E-05 40.6 2.7 19 174-192 236-254 (532)
419 3cmw_A Protein RECA, recombina 84.5 0.63 2.2E-05 45.3 3.5 26 172-197 1430-1455(1706)
420 2vf7_A UVRA2, excinuclease ABC 84.1 0.51 1.8E-05 42.7 2.6 25 171-195 34-59 (842)
421 2j9r_A Thymidine kinase; TK1, 83.9 1.3 4.4E-05 33.2 4.3 27 171-197 26-52 (214)
422 3c5h_A Glucocorticoid receptor 82.5 0.57 2E-05 35.8 2.0 17 179-195 34-50 (255)
423 2iut_A DNA translocase FTSK; n 82.4 1.8 6.1E-05 37.4 5.1 25 173-197 214-238 (574)
424 3zvr_A Dynamin-1; hydrolase, D 81.4 1.7 5.8E-05 39.0 4.8 25 172-196 50-74 (772)
425 2r6f_A Excinuclease ABC subuni 80.7 0.82 2.8E-05 42.0 2.6 25 171-195 42-67 (972)
426 3lfu_A DNA helicase II; SF1 he 80.6 0.79 2.7E-05 39.8 2.4 19 174-192 23-41 (647)
427 2ygr_A Uvrabc system protein A 80.6 0.83 2.8E-05 42.0 2.6 25 171-195 44-69 (993)
428 1g5t_A COB(I)alamin adenosyltr 80.1 0.96 3.3E-05 33.4 2.4 24 173-196 28-51 (196)
429 2fz4_A DNA repair protein RAD2 80.0 2.4 8.2E-05 31.9 4.7 21 176-196 111-131 (237)
430 4akg_A Glutathione S-transfera 79.1 1.1 3.7E-05 45.7 3.0 32 164-196 1259-1290(2695)
431 3fgn_A Dethiobiotin synthetase 79.1 1.9 6.7E-05 33.0 3.9 30 168-197 21-51 (251)
432 3avx_A Elongation factor TS, e 78.8 1.4 4.8E-05 41.5 3.5 25 172-196 295-319 (1289)
433 3pih_A Uvrabc system protein A 78.7 0.81 2.8E-05 41.8 1.9 24 172-195 23-47 (916)
434 3a7p_A Autophagy protein 16; c 77.2 16 0.00055 25.5 8.1 50 32-84 98-147 (152)
435 3f8t_A Predicted ATPase involv 76.4 1.8 6.1E-05 36.7 3.2 41 154-195 215-261 (506)
436 3czp_A Putative polyphosphate 76.2 3.8 0.00013 34.7 5.2 39 159-197 27-67 (500)
437 1cip_A Protein (guanine nucleo 74.9 1.9 6.4E-05 34.8 2.9 22 172-193 31-52 (353)
438 1qde_A EIF4A, translation init 74.4 5.9 0.0002 28.9 5.5 16 174-189 52-67 (224)
439 3czp_A Putative polyphosphate 73.5 4.4 0.00015 34.4 4.9 32 166-197 292-324 (500)
440 4akg_A Glutathione S-transfera 73.2 2 6.9E-05 43.8 3.2 25 172-196 922-946 (2695)
441 4ehx_A Tetraacyldisaccharide 4 71.4 4.6 0.00016 32.0 4.4 26 172-197 35-62 (315)
442 2pl3_A Probable ATP-dependent 71.0 6 0.0002 29.3 4.8 17 174-190 63-79 (236)
443 3pey_A ATP-dependent RNA helic 70.9 8.1 0.00028 30.6 5.9 29 164-192 35-63 (395)
444 3rhf_A Putative polyphosphate 70.7 4.5 0.00015 31.7 4.0 23 175-197 77-99 (289)
445 3b6e_A Interferon-induced heli 69.8 2.5 8.7E-05 30.6 2.4 22 174-195 49-70 (216)
446 1kjw_A Postsynaptic density pr 69.0 2.4 8.4E-05 33.2 2.3 23 172-197 104-126 (295)
447 3fht_A ATP-dependent RNA helic 68.4 8.8 0.0003 30.7 5.6 26 165-190 56-81 (412)
448 1azs_C GS-alpha; complex (lyas 67.4 3.4 0.00012 34.0 2.9 22 172-193 39-60 (402)
449 2gxq_A Heat resistant RNA depe 65.7 5.1 0.00017 28.8 3.4 18 174-191 39-56 (207)
450 1hv8_A Putative ATP-dependent 64.7 9.7 0.00033 29.8 5.1 20 174-193 45-64 (367)
451 1vec_A ATP-dependent RNA helic 63.8 12 0.00041 26.8 5.1 18 174-191 41-58 (206)
452 3rc3_A ATP-dependent RNA helic 63.3 4.6 0.00016 35.6 3.1 21 172-192 154-174 (677)
453 4a14_A Kinesin, kinesin-like p 62.6 18 0.00062 28.9 6.3 30 161-190 72-101 (344)
454 3mtu_A Tropomyosin alpha-1 cha 62.3 14 0.00048 22.5 4.3 14 69-82 55-68 (75)
455 3nrs_A Dihydrofolate:folylpoly 61.3 13 0.00043 30.8 5.3 34 160-195 37-72 (437)
456 3fmp_B ATP-dependent RNA helic 60.8 16 0.00055 30.2 5.9 27 164-190 122-148 (479)
457 1t5c_A CENP-E protein, centrom 60.1 18 0.00063 29.0 5.9 29 162-190 67-95 (349)
458 1t6n_A Probable ATP-dependent 60.1 13 0.00045 26.9 4.8 18 175-192 53-70 (220)
459 1w78_A FOLC bifunctional prote 59.0 14 0.00048 30.3 5.2 34 161-196 35-70 (422)
460 1pjr_A PCRA; DNA repair, DNA r 58.1 5.7 0.00019 35.2 2.8 18 175-192 26-43 (724)
461 2y65_A Kinesin, kinesin heavy 56.7 26 0.00089 28.3 6.3 30 161-190 73-102 (365)
462 1goj_A Kinesin, kinesin heavy 56.6 29 0.00098 27.9 6.5 31 160-190 68-98 (355)
463 1jbw_A Folylpolyglutamate synt 56.4 15 0.00051 30.2 4.9 36 160-197 24-61 (428)
464 2vvg_A Kinesin-2; motor protei 56.4 23 0.00077 28.5 5.8 30 161-190 78-107 (350)
465 3cob_A Kinesin heavy chain-lik 56.3 21 0.00073 28.9 5.7 48 163-210 70-131 (369)
466 1o5z_A Folylpolyglutamate synt 55.9 16 0.00054 30.2 5.0 35 160-196 37-73 (442)
467 3b6u_A Kinesin-like protein KI 55.4 30 0.001 28.1 6.4 30 161-190 90-119 (372)
468 3h1t_A Type I site-specific re 55.4 24 0.00084 30.0 6.3 35 161-196 187-221 (590)
469 2z0m_A 337AA long hypothetical 55.3 12 0.00041 28.9 4.0 20 174-193 32-51 (337)
470 3vkg_A Dynein heavy chain, cyt 55.3 13 0.00045 38.8 5.0 34 176-210 909-942 (3245)
471 3sqw_A ATP-dependent RNA helic 55.2 25 0.00087 29.9 6.4 18 172-189 59-76 (579)
472 3tvt_A Disks large 1 tumor sup 54.5 6.7 0.00023 30.7 2.3 30 171-206 98-127 (292)
473 1xti_A Probable ATP-dependent 54.4 24 0.00081 27.9 5.7 19 174-192 46-64 (391)
474 2jee_A YIIU; FTSZ, septum, coi 54.3 36 0.0012 21.0 8.1 74 9-82 6-79 (81)
475 3i5x_A ATP-dependent RNA helic 53.5 28 0.00097 29.3 6.4 25 165-189 103-127 (563)
476 1s2m_A Putative ATP-dependent 52.1 18 0.00063 28.7 4.7 17 176-192 61-77 (400)
477 3ber_A Probable ATP-dependent 51.9 30 0.001 25.8 5.7 17 174-190 81-97 (249)
478 2h58_A Kinesin-like protein KI 51.7 35 0.0012 27.1 6.2 29 162-190 70-98 (330)
479 2akf_A Coronin-1A; coiled coil 50.5 21 0.00072 17.3 4.2 22 34-55 3-24 (32)
480 2nr8_A Kinesin-like protein KI 50.1 41 0.0014 27.0 6.4 30 161-190 92-121 (358)
481 2vos_A Folylpolyglutamate synt 50.1 21 0.00073 29.9 4.9 35 160-196 49-85 (487)
482 4etp_A Kinesin-like protein KA 49.6 42 0.0014 27.5 6.5 52 159-211 127-192 (403)
483 2lw1_A ABC transporter ATP-bin 49.6 45 0.0015 20.8 7.1 62 27-89 19-80 (89)
484 1lkx_A Myosin IE heavy chain; 49.6 14 0.00049 32.7 3.9 28 170-197 91-118 (697)
485 1rif_A DAR protein, DNA helica 49.6 7.9 0.00027 29.6 2.1 20 177-196 132-151 (282)
486 2va8_A SSO2462, SKI2-type heli 49.5 8 0.00027 34.0 2.3 20 173-192 46-65 (715)
487 3u4q_A ATP-dependent helicase/ 49.4 8 0.00028 36.6 2.4 18 173-190 23-40 (1232)
488 3eiq_A Eukaryotic initiation f 48.9 18 0.00062 28.8 4.3 16 176-191 80-95 (414)
489 1q0u_A Bstdead; DEAD protein, 48.9 16 0.00056 26.5 3.7 17 175-191 43-59 (219)
490 1w9i_A Myosin II heavy chain; 48.2 15 0.00052 32.9 3.9 28 169-196 168-195 (770)
491 3bfn_A Kinesin-like protein KI 48.0 27 0.00093 28.5 5.1 29 162-190 88-116 (388)
492 2zpa_A Uncharacterized protein 47.8 22 0.00077 31.3 4.8 37 161-197 180-216 (671)
493 3iuy_A Probable ATP-dependent 47.7 15 0.00052 26.8 3.4 17 174-190 58-74 (228)
494 2j0s_A ATP-dependent RNA helic 47.6 29 0.001 27.7 5.3 17 175-191 76-92 (410)
495 2oxc_A Probable ATP-dependent 47.6 25 0.00084 25.7 4.5 16 175-190 63-78 (230)
496 3lk7_A UDP-N-acetylmuramoylala 46.9 21 0.00072 29.5 4.4 23 172-196 111-133 (451)
497 3fmo_B ATP-dependent RNA helic 46.7 40 0.0014 26.0 5.8 18 173-190 131-148 (300)
498 3bor_A Human initiation factor 46.6 22 0.00076 26.2 4.1 16 175-190 69-84 (237)
499 4db1_A Myosin-7; S1DC, cardiac 46.5 17 0.00058 32.7 3.9 28 170-197 168-195 (783)
500 2p6r_A Afuhel308 helicase; pro 45.1 9.1 0.00031 33.6 2.0 20 173-192 40-59 (702)
No 1
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.64 E-value=8.1e-16 Score=106.22 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=70.8
Q ss_pred hHhhHhHHHHHhhhccchhhchhHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-hhchhhHHHHHHHHHHHHHHHHHHh
Q 041747 7 VLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQ-RKRKKVVQGWFDAVESQIKEVDVIS 85 (211)
Q Consensus 7 v~~~~~~l~~~~~~~~~~~~~~~~~v~~L~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~Wl~~v~~~~~~~ed~l 85 (211)
+.++++||.+++.+++..+.+++++++.|+++|+.|+++|.| ++... ...++.++.|+++||+++||+||+|
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED~i 75 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIEDVV 75 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445899999999999999999999999999999999999998 55442 2236899999999999999999999
Q ss_pred HhhHHHHh
Q 041747 86 RKGEQEVQ 93 (211)
Q Consensus 86 d~~~~~~~ 93 (211)
|+|.++..
T Consensus 76 D~f~~~~~ 83 (115)
T 3qfl_A 76 DKFLVQVD 83 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998764
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.45 E-value=6.8e-14 Score=121.17 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=51.0
Q ss_pred cchHHHHHHHHHhhccC---CCeEEEEEcCCCCcHHHHHHHHHh--hhhhcCCCccEEEEeC
Q 041747 155 VGFDSMLDEVWGHIADY---RCRIIGLYGIGGVGKTTLLKKLNN--KFLDINHHFDLVIWVA 211 (211)
Q Consensus 155 ~g~~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTTLa~~i~~--~~~~v~~~F~~~~wv~ 211 (211)
+||+.++++|.++|.+. +.++|+|+||||+||||||+.+|+ +. +++.+|++++||+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~ 191 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLK 191 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEE
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEE
Confidence 69999999999999753 689999999999999999999998 55 7789999999984
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.13 E-value=1.6e-11 Score=111.51 Aligned_cols=57 Identities=14% Similarity=0.258 Sum_probs=51.5
Q ss_pred ccchHHHHHHHHHhhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccE-EEEeC
Q 041747 154 TVGFDSMLDEVWGHIAD-YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDL-VIWVA 211 (211)
Q Consensus 154 ~~g~~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~-~~wv~ 211 (211)
.+||+..+++|.++|.+ +..++|+|+||||+||||||+.+|++. ++..+|++ ++||+
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVs 188 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLN 188 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEE
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEE
Confidence 48999999999999976 568999999999999999999999987 77889998 89984
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.09 E-value=5.7e-11 Score=103.43 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=51.0
Q ss_pred ccccchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-CCCc-cEEEEeC
Q 041747 152 EETVGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKFLDI-NHHF-DLVIWVA 211 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v-~~~F-~~~~wv~ 211 (211)
+.++||+..++.|..+|.. ++.++|+|+||||+||||||+.+|++. .+ ..+| +.++||+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~ 186 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVS 186 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEE
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEE
Confidence 4589999999999999973 568999999999999999999999876 55 6778 4799974
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.06 E-value=5.4e-11 Score=111.07 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=49.6
Q ss_pred cccccchHHHHHHHHHhhc--cCCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCc-cEEEEeC
Q 041747 151 MEETVGFDSMLDEVWGHIA--DYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHF-DLVIWVA 211 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F-~~~~wv~ 211 (211)
...++||+.++++|..+|. +++.++|+|+||||+||||||+.+|++...+..+| +.++||+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~ 186 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS 186 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE
Confidence 3558999999999999995 35789999999999999999999999751235555 5566874
No 6
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.26 E-value=1.6e-06 Score=63.57 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=40.6
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|++..++.+..++.......+-|+|+.|+||||||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999987666778899999999999999998864
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.19 E-value=2.2e-06 Score=69.14 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=39.0
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++||+.+.+.|..++.+. .++.|+|++|+|||||++.+.+..
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc
Confidence 56899999999999988743 799999999999999999998753
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.17 E-value=4.3e-06 Score=67.53 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=37.9
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++||+.+.+.|.. +.. .++.|+|++|+|||||++.+.+..
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc
Confidence 568999999999999 764 699999999999999999999865
No 9
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.16 E-value=2.5e-06 Score=62.38 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=40.4
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|++..+..+...+.......+-|+|+.|+||||||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999987667778899999999999999998764
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.12 E-value=2.6e-06 Score=69.60 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|++..++.+..++.. .....+.|+|++|+|||||++.+.+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999873 457799999999999999999999865
No 11
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.11 E-value=4.2e-06 Score=62.80 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++..++.+..++.......+-|+|++|+||||||+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999987655569999999999999999998753
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.06 E-value=6e-06 Score=62.67 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=39.6
Q ss_pred ccccchHHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++..++.+..++.... ...+-|+|++|+|||||++.+.+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999987543 4588999999999999999998765
No 13
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.06 E-value=2.1e-06 Score=71.05 Aligned_cols=46 Identities=20% Similarity=0.031 Sum_probs=38.0
Q ss_pred ccccchHHHHHHHHHhh-cc------CCCeEEEE--EcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHI-AD------YRCRIIGL--YGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L-~~------~~~~vi~I--~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|++.+++.|..+| .. .....+-| +|++|+|||||++.+++..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 56899999999999988 42 24556666 9999999999999999875
No 14
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.95 E-value=9.1e-06 Score=66.57 Aligned_cols=46 Identities=22% Similarity=0.087 Sum_probs=39.6
Q ss_pred ccccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|++..++.+..+|.. .....+-|+|++|+||||||+.+++..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999887753 446789999999999999999999864
No 15
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.95 E-value=1.8e-05 Score=64.79 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=39.7
Q ss_pred ccccchHHHHHHHHHhhcc----CCCe--EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD----YRCR--IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~----~~~~--vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.++|++...+.+..++.. .... .+.|+|++|+|||||++.+.+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999998864 3334 89999999999999999999876
No 16
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.93 E-value=9.1e-06 Score=66.39 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=40.3
Q ss_pred ccccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.++|++...+.+..+|.. .....+.|+|++|+||||||+.+.+..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999853 457789999999999999999999865
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=2.4e-05 Score=62.51 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=39.9
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.+..++.......+-++|+.|+||||+|+.+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4578999999999999887666569999999999999999998763
No 18
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.83 E-value=2.1e-05 Score=62.74 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++..++.+..++.......+-++|++|+||||+|+.+.+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5688999999999999887665559999999999999999998763
No 19
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.81 E-value=1.6e-05 Score=58.31 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 157 FDSMLDEVWGHIAD---YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 157 ~~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+...+.+..++.+ .....+.++|++|+|||||++.+.+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44455555555543 356899999999999999999998875
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.72 E-value=4.8e-05 Score=59.77 Aligned_cols=46 Identities=28% Similarity=0.345 Sum_probs=38.4
Q ss_pred ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|...+.. ....-+-|+|++|+||||||+.+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5688999999998887742 345678999999999999999998865
No 21
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.71 E-value=2.9e-05 Score=62.77 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=39.0
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.+..++.......+-++|+.|+||||||+.+.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999886654558999999999999999998763
No 22
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=3.9e-05 Score=62.19 Aligned_cols=45 Identities=18% Similarity=0.108 Sum_probs=38.0
Q ss_pred ccccchHHHHHHHHHhh-ccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 152 EETVGFDSMLDEVWGHI-ADYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L-~~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+++|.+...+.+..++ .......+.++|++|+|||||++.+.+.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 55789999999999998 6554444999999999999999998774
No 23
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.66 E-value=6e-05 Score=59.93 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=39.6
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.+..++.......+-++|+.|+||||+|+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 5588999999999999887665558999999999999999998763
No 24
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.66 E-value=4.6e-05 Score=53.96 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=33.6
Q ss_pred cccchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|....+.++...+.. ....-|-|+|..|+|||+||+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 357877777777777642 333456799999999999999999864
No 25
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.64 E-value=5.3e-05 Score=61.27 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=35.9
Q ss_pred ccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|.+..++.+-..+.. .....+.++|++|+||||||+.+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567877777776666542 245789999999999999999998865
No 26
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.63 E-value=7e-05 Score=55.79 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=29.5
Q ss_pred HHHHHHHHhhccC----CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 159 SMLDEVWGHIADY----RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 159 ~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+.+..++... ....+-|+|++|+||||||+.+++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555665532 12788999999999999999999876
No 27
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.62 E-value=6.5e-05 Score=59.85 Aligned_cols=46 Identities=26% Similarity=0.362 Sum_probs=37.0
Q ss_pred ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|..++.. ...+.+-++|++|+||||||+.+.+..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4578888888877776542 345679999999999999999999865
No 28
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.60 E-value=3.6e-05 Score=57.93 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 170 DYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.....+|+|+|++|+|||||++.|..-
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999998654
No 29
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.60 E-value=8.7e-05 Score=60.04 Aligned_cols=46 Identities=22% Similarity=0.383 Sum_probs=38.0
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|.+..++.|..++.......+.++|+.|+||||||+.+.+..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4578888888888888876655458999999999999999987753
No 30
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.58 E-value=0.00013 Score=57.63 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|...+.. ....-+-++|++|+||||||+.+.+..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4578999888888887632 235688999999999999999998865
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.57 E-value=0.00011 Score=59.14 Aligned_cols=47 Identities=26% Similarity=0.295 Sum_probs=38.8
Q ss_pred cccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 151 MEETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+++|.+..++.+..++.. .....+-|+|+.|+||||||+.+.+..
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 35689999999988888763 345678899999999999999998764
No 32
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=0.00011 Score=63.10 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=39.6
Q ss_pred cccccchHHHHHHHHHhhcc-----------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 151 MEETVGFDSMLDEVWGHIAD-----------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+++|.+..++.|..||.. ...+.+-|+|+.|+||||||+.+.+..
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999874 134789999999999999999998764
No 33
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.56 E-value=7.7e-05 Score=62.81 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=38.5
Q ss_pred ccccchHHHH---HHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSML---DEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..+ ..|...+.......+-++|+.|+||||||+.|.+..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578888777 677777776777889999999999999999999865
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.54 E-value=0.00012 Score=56.52 Aligned_cols=46 Identities=24% Similarity=0.220 Sum_probs=34.4
Q ss_pred ccccchHHHHHHHHHhhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIA---D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.+..++. . ....-+-++|++|+||||||+.+.+..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457888777777655532 1 234557799999999999999998865
No 35
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.52 E-value=8.9e-05 Score=62.78 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++..+..++..|......-+-++|++|+||||||+.+....
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999865445556799999999999999998763
No 36
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.52 E-value=0.00012 Score=55.61 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 158 DSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 158 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+.+..++.......+-|+|++|+||||||+.+.+..
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666666655567889999999999999999998865
No 37
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.51 E-value=7.2e-05 Score=53.99 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++++|++|.|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 567899999999999999999998754
No 38
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.51 E-value=7.1e-05 Score=60.15 Aligned_cols=44 Identities=9% Similarity=0.087 Sum_probs=39.2
Q ss_pred ccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 154 TVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 154 ~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.||+++.+.|...|.. .....+-|+|++|+|||++++.|.++.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 67999999999988764 577889999999999999999999876
No 39
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.51 E-value=0.00014 Score=59.20 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=38.9
Q ss_pred ccccchHHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++..++.+..++.... ...+-|+|+.|+||||||+.+.+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999987644 4568899999999999999998764
No 40
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.49 E-value=0.00011 Score=58.67 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=37.8
Q ss_pred ccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..+..+..++.. .....+-|+|+.|+||||||+.+++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 5588998888888877752 345678899999999999999998865
No 41
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.48 E-value=7.4e-05 Score=59.97 Aligned_cols=27 Identities=33% Similarity=0.308 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|+|+|++|+|||||++.|..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 467899999999999999999998754
No 42
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.48 E-value=8.3e-05 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+|+|+|++|+|||||++.+...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999999764
No 43
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.46 E-value=0.00015 Score=57.49 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=33.9
Q ss_pred cccchHHHHHHHHHhhc---------------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIA---------------DYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++|.+..++.|..++. ......+-++|+.|+||||||+.+.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46788777777765543 2344578999999999999999887654
No 44
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.45 E-value=7e-05 Score=56.84 Aligned_cols=26 Identities=46% Similarity=0.621 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|+|||||++.+.+-.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999999987643
No 45
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.44 E-value=0.00017 Score=55.87 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=33.5
Q ss_pred ccccchHHHHHHHHHhh---cc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHI---AD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.+...+ .. ....-+.|+|++|+||||||+.+.+..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 45788877666665443 21 123457899999999999999998865
No 46
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.44 E-value=0.00011 Score=54.88 Aligned_cols=28 Identities=36% Similarity=0.506 Sum_probs=24.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 170 DYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.....+|.|+|++|+|||||++.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999997765
No 47
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.43 E-value=8.4e-05 Score=57.39 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.. .+++|+|++|+|||||++.+..-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 46 89999999999999999999864
No 48
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.43 E-value=9.6e-05 Score=57.02 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+|+|.|++|+|||||++.+.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999774
No 49
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.42 E-value=8.1e-05 Score=57.25 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|++|+|||||++.+..-
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 47789999999999999999999764
No 50
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.41 E-value=7.4e-05 Score=57.03 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998643
No 51
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.41 E-value=0.00017 Score=57.25 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|+|+|..|+|||||++.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999987754
No 52
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.41 E-value=0.00029 Score=57.45 Aligned_cols=46 Identities=22% Similarity=0.173 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|...+.. ...+-+-++|+.|+||||||+.+.+..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999888888887631 346678899999999999999998764
No 53
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.40 E-value=0.0001 Score=52.57 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+.|+|++|+|||||++.+.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 66799999999999999999999875
No 54
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.38 E-value=9.7e-05 Score=57.76 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+..-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 577899999999999999999998743
No 55
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.38 E-value=0.00021 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
....+|+|.|++|+|||||++.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999875
No 56
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.38 E-value=0.00013 Score=54.41 Aligned_cols=26 Identities=42% Similarity=0.367 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|.|+|+.|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56799999999999999999997643
No 57
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.37 E-value=0.00013 Score=56.31 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+..+|+|+|++|+|||||++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998543
No 58
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.37 E-value=0.0001 Score=56.71 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477899999999999999999998753
No 59
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.36 E-value=0.00011 Score=57.53 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+..-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 577899999999999999999998743
No 60
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.36 E-value=0.00028 Score=56.62 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|...+.- ...+-+-++|+.|+|||+||+.+.+..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999888887721 124568899999999999999998865
No 61
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.34 E-value=0.00027 Score=56.86 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|...+.- ...+-|-++|+.|+|||+||+.+.+..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 5678888888887766531 234678899999999999999999864
No 62
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.34 E-value=0.00022 Score=56.06 Aligned_cols=46 Identities=24% Similarity=0.222 Sum_probs=32.1
Q ss_pred ccccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.|.++.++.|...+. + .-.+=+.++|++|+|||||++.|.+..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 446777777777765432 1 111229999999999999999998864
No 63
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.34 E-value=9.9e-05 Score=57.54 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999997743
No 64
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.34 E-value=0.00013 Score=57.14 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|++|+|||||++.+..-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57789999999999999999999884
No 65
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.34 E-value=0.00025 Score=56.07 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=36.4
Q ss_pred ccccchHHHHHHHHHhhcc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD--------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|.+..++.+...+.. ....-+-++|+.|+||||||+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478988888888777643 235567799999999999999998765
No 66
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.34 E-value=0.0001 Score=56.85 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+..-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998743
No 67
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.33 E-value=0.00012 Score=57.01 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+..-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 477899999999999999999998743
No 68
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.33 E-value=9.2e-05 Score=56.15 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998743
No 69
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.32 E-value=0.00012 Score=57.72 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|++|+|||||++.+..-
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999999764
No 70
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.32 E-value=0.00012 Score=56.78 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|++|.|||||++.+.+-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999883
No 71
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.32 E-value=0.00013 Score=56.27 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+..-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477899999999999999999998743
No 72
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.32 E-value=0.00028 Score=53.28 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.2
Q ss_pred HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+.+-..+......+|.|+|.+|+|||||+..+....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444444444578899999999999999999988763
No 73
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.31 E-value=6.9e-05 Score=52.96 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=32.0
Q ss_pred cccchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++|....+.++...+.. ....-|-|+|..|+|||+||+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 357777777777776643 333446799999999999999998754
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.31 E-value=0.00016 Score=57.75 Aligned_cols=26 Identities=38% Similarity=0.591 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|+|||||++.+....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998765
No 75
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.31 E-value=0.00013 Score=55.82 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998754
No 76
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.29 E-value=0.00035 Score=56.82 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=35.2
Q ss_pred ccccchHHHHHH---HHHhhccCC--CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDE---VWGHIADYR--CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~---l~~~L~~~~--~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++++|.+..+.. +...+.... .+.+-++|++|+||||||+.+.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468898877665 444444433 3589999999999999999999876
No 77
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.29 E-value=0.00016 Score=57.79 Aligned_cols=26 Identities=38% Similarity=0.703 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|+|+|++|+|||||++.+..-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999998765
No 78
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.29 E-value=0.00014 Score=57.10 Aligned_cols=27 Identities=33% Similarity=0.580 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|..-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 577899999999999999999998743
No 79
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.28 E-value=0.00013 Score=57.09 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|++|.|||||++.+.+-
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 47789999999999999999999764
No 80
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.28 E-value=0.0001 Score=55.66 Aligned_cols=24 Identities=29% Similarity=0.171 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
...+++|+|++|+|||||++.+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 678999999999999999999875
No 81
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.28 E-value=0.00024 Score=53.47 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=32.1
Q ss_pred chHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 156 GFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 156 g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+..+..+.+...+...+..+|.|+|.+|+|||||++.+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555555555545678899999999999999999987653
No 82
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.28 E-value=0.00015 Score=56.88 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|++|+|||||++.+..-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 47789999999999999999999874
No 83
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.28 E-value=0.00015 Score=56.66 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+..-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999998743
No 84
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.27 E-value=0.00013 Score=56.48 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+..-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997743
No 85
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.27 E-value=0.00014 Score=56.49 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 367799999999999999999998753
No 86
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.27 E-value=0.00019 Score=57.42 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|+|+|++|+|||||++.+..-.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998754
No 87
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.27 E-value=0.00031 Score=56.48 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+.+|||.|++|+|||||++.+..-.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46699999999999999999997654
No 88
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.26 E-value=0.00021 Score=64.85 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=39.5
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++..+..++..|......-+-++|++|+||||||+.+.+..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999876555567899999999999999998764
No 89
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.26 E-value=0.00014 Score=57.42 Aligned_cols=27 Identities=44% Similarity=0.508 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 477899999999999999999998743
No 90
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.26 E-value=0.00014 Score=56.50 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998753
No 91
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.25 E-value=0.00053 Score=52.91 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041747 176 IGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 176 i~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.|+|++|+|||||++.+.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998865
No 92
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.24 E-value=0.00022 Score=56.55 Aligned_cols=45 Identities=31% Similarity=0.335 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHhhccC---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIADY---------RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|.+..++.+...+... ....+.++|+.|+||||||+.+.+..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3568777777777766531 23589999999999999999998864
No 93
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.22 E-value=0.00012 Score=55.82 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=17.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH-hh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLN-NK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~-~~ 196 (211)
...+++|+|++|+|||||++.+. ..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 56799999999999999999998 53
No 94
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.22 E-value=0.0004 Score=62.16 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++..+..++..|......-+-++|.+|+||||||+.+.+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999876666677899999999999999998754
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.21 E-value=0.00022 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
...+++|+|++|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 678999999999999999999873
No 96
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.20 E-value=0.00024 Score=58.07 Aligned_cols=26 Identities=38% Similarity=0.591 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|+|||||++.+....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 57899999999999999999998765
No 97
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.20 E-value=0.00033 Score=62.71 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=39.1
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|++..+..+...|......-+-++|++|+||||+|+.+....
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999876555557799999999999999998763
No 98
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.19 E-value=0.00024 Score=55.12 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
....+|+|+|++|+|||||++.+..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999974
No 99
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.18 E-value=0.00026 Score=57.13 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998765
No 100
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.18 E-value=0.00046 Score=58.57 Aligned_cols=27 Identities=41% Similarity=0.573 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|+|+|.+|+|||||++.|....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 357899999999999999999998765
No 101
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.18 E-value=0.0003 Score=54.68 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=32.5
Q ss_pred cccchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|.......+...+.. ....-+-|+|..|+|||+||+.+++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 467877777777766542 234567799999999999999999864
No 102
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.17 E-value=0.00047 Score=56.20 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|...+.. ...+-|-++|+.|+|||+||+.+.+..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 5578998888888877631 123457899999999999999999875
No 103
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.16 E-value=0.00076 Score=55.57 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=38.1
Q ss_pred cccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 151 MEETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
-.+++|.+..++.|..++.. ....-+-|+|+.|+|||+||+.|.+..
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999998888731 234678899999999999999998764
No 104
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.16 E-value=0.00028 Score=53.33 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...+++|+|++|+|||||++.+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999874
No 105
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.16 E-value=0.00053 Score=53.75 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=31.4
Q ss_pred ccccchHHHHHHHHHhhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIA---D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++++|.+..+.++..... . .-.+=+.|+|++|+|||||++.+.+..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 457787665555544332 1 011228999999999999999998865
No 106
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.15 E-value=0.00024 Score=56.35 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 577899999999999999999998753
No 107
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.14 E-value=0.00062 Score=54.44 Aligned_cols=46 Identities=22% Similarity=0.080 Sum_probs=38.4
Q ss_pred ccccchHHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++++|.+..+..+..++.... ..++-+.|+.|+||||+|+.+.+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 568899999999999987654 4577778889999999999998754
No 108
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.12 E-value=0.00024 Score=55.54 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..+++|+|++|+|||||++.+..-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 779999999999999999999763
No 109
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.11 E-value=0.00028 Score=54.90 Aligned_cols=46 Identities=24% Similarity=0.217 Sum_probs=31.9
Q ss_pred ccccchHHHHHHHHHhhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIA---D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.+...+. . ....-+-++|+.|+||||||+.+.+..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 457777665555555432 1 123346799999999999999998865
No 110
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.11 E-value=0.00068 Score=56.95 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|...+.. ...+-|-++|+.|+|||+||+.+.+..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 5678998888888876621 234678899999999999999999864
No 111
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.10 E-value=0.00035 Score=54.56 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 467899999999999999999998754
No 112
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.10 E-value=0.00089 Score=52.21 Aligned_cols=27 Identities=26% Similarity=0.153 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....-+-++|+.|+||||||+.+.+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 456778899999999999999998864
No 113
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.10 E-value=0.00034 Score=55.88 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+...+++|+|++|.|||||++.|.+-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 57789999999999999999999764
No 114
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.07 E-value=0.00063 Score=53.81 Aligned_cols=27 Identities=26% Similarity=0.165 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|-|.|++|+|||||++.+....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999997653
No 115
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.05 E-value=0.00038 Score=56.92 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.|..-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 578899999999999999999998743
No 116
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.05 E-value=0.00048 Score=53.35 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|.++|++|+||||+++.+....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999997754
No 117
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.03 E-value=0.0004 Score=56.70 Aligned_cols=27 Identities=37% Similarity=0.381 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|..-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 467899999999999999999998743
No 118
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.00082 Score=56.21 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=36.2
Q ss_pred ccccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.|.+..++.|...+. . ..++=|=++|++|+|||+||+.|.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 346788888888876643 1 346678889999999999999999875
No 119
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.03 E-value=0.00026 Score=56.58 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|++|.|||||++.+..-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC
Confidence 57889999999999999999999764
No 120
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.01 E-value=0.00098 Score=54.20 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=22.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 170 DYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
......|.++|+.|+|||||++.+...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 345667999999999999999988764
No 121
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.00 E-value=0.00042 Score=55.11 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|+++|.+|+||||++..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999987655
No 122
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00089 Score=55.91 Aligned_cols=46 Identities=30% Similarity=0.385 Sum_probs=35.9
Q ss_pred ccccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.|.+..++.|...+. . ..++=|-++|++|+|||+||+.|.+..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456788888887776653 1 345668899999999999999998875
No 123
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.99 E-value=0.00064 Score=53.88 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+..+-++|++|+|||+||+.|.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999999875
No 124
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.99 E-value=0.0011 Score=53.07 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=28.4
Q ss_pred HHHHHHHhhccC--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWGHIADY--RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~~L~~~--~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+..++... ....+-|+|++|+||||||+.+.+..
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 344444544433 35689999999999999999999865
No 125
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.99 E-value=0.00047 Score=50.84 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..-.|+|+|.+|+|||||++.+.+..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 35689999999999999999998753
No 126
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.98 E-value=0.00099 Score=54.28 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=34.9
Q ss_pred ccchHHHHHHHHHhhc-------------c--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 154 TVGFDSMLDEVWGHIA-------------D--YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 154 ~~g~~~~~~~l~~~L~-------------~--~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++|.+..++.+...+. . .....+-++|++|+|||+||+.|.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5788888888777762 1 134678899999999999999998865
No 127
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.98 E-value=0.00061 Score=54.70 Aligned_cols=44 Identities=25% Similarity=0.294 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|.+..+..+...+.. ..-+-++|++|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3467888888888887764 3467889999999999999998754
No 128
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.98 E-value=0.00049 Score=56.30 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|..-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 467899999999999999999998743
No 129
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.98 E-value=0.00048 Score=56.27 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|..-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 467899999999999999999998743
No 130
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.98 E-value=0.00042 Score=56.51 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|..-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999998743
No 131
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.97 E-value=0.00076 Score=53.78 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|.......+...+.. ....-+-|+|..|+|||+||+.|++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 467877777777777653 344556799999999999999999854
No 132
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.96 E-value=0.00049 Score=55.21 Aligned_cols=25 Identities=32% Similarity=0.683 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
++.+||+|.|-|||||||.+-.+--
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4789999999999999999887744
No 133
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0011 Score=55.57 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.|.+..++.|...+. . ..++=|-++|++|+|||+||+.|.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 346788887777766553 1 345778899999999999999999876
No 134
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.95 E-value=0.00071 Score=56.29 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|.+|+|||||.+.+.+-
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 46679999999999999999999883
No 135
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.95 E-value=0.00068 Score=57.80 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=35.2
Q ss_pred cccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|.+..++.+...+. ...-+-++|++|+|||+||+.+.+..
T Consensus 23 ~ivGq~~~i~~l~~al~--~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHH--HTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHh--cCCeeEeecCchHHHHHHHHHHHHHH
Confidence 36788888888887776 34567899999999999999998754
No 136
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.95 E-value=0.00057 Score=52.82 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
....+|+|.|+.|+||||+++.+-.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999865
No 137
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.94 E-value=0.00055 Score=56.20 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|..-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 477899999999999999999998743
No 138
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.94 E-value=0.00055 Score=56.31 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.|..-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 467899999999999999999998743
No 139
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.93 E-value=0.00071 Score=50.76 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|.|+|+.|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999997754
No 140
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.93 E-value=0.0011 Score=53.98 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.|.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 478899999999999999999998865
No 141
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.92 E-value=0.00042 Score=56.35 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|..-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 467899999999999999999998743
No 142
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.92 E-value=0.0013 Score=55.82 Aligned_cols=46 Identities=24% Similarity=0.285 Sum_probs=33.5
Q ss_pred ccccchHHHHHHHHHhh---cc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHI---AD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++++...+ .+ .-.+-+-++|++|+||||||+.|.+..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45788877666665543 22 123447799999999999999999865
No 143
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.91 E-value=0.00051 Score=56.39 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|..-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 467899999999999999999998743
No 144
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.91 E-value=0.00077 Score=58.86 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|.+..++.+...+. ....+.|+|++|+||||||+.|.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~--~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAAN--QKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHH--TTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhcccccc--CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 457898888888877776 44689999999999999999998754
No 145
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.91 E-value=0.00097 Score=55.59 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=24.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 170 DYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.....+++|+|++|+|||||++.+.+..
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3567799999999999999999998754
No 146
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.90 E-value=0.00062 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
....+|+|.|+.|+||||+++.+-
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999999999986
No 147
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.88 E-value=0.00038 Score=56.77 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|..-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999998743
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.88 E-value=0.00074 Score=53.97 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|.|+|++|+||||++..+....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 357899999999999999999998765
No 149
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.87 E-value=0.00061 Score=54.87 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=33.4
Q ss_pred ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|.+..+..+...+......-+-++|+.|+|||+||+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4578887766555444433333348899999999999999998864
No 150
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.86 E-value=0.001 Score=53.03 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=26.6
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++|...+ ...+++++|++|+|||||++.+. ..
T Consensus 156 i~~L~~~l---~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYL---EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHT---TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhc---cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 45566655 45789999999999999999998 43
No 151
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.84 E-value=0.0007 Score=52.49 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+|.|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6789999999999999999997643
No 152
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0013 Score=54.42 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=35.4
Q ss_pred ccccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++.|.+..+++|...+. . ..++=|=++|++|+|||+||+.|.+..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 346788887777766643 1 345667789999999999999998875
No 153
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.83 E-value=0.0014 Score=55.73 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=36.8
Q ss_pred ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|..++.. ....-+-|+|+.|+|||+||+.|.+..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4578988888888877642 344568899999999999999998764
No 154
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.83 E-value=0.0016 Score=53.23 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+-++|+.|+||||||+.+.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998764
No 155
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.82 E-value=0.00072 Score=61.02 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=35.5
Q ss_pred ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.|..++.- ....-|.++|++|+||||||+.|.+..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4577877777777666531 345679999999999999999998754
No 156
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.82 E-value=0.00075 Score=49.23 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041747 174 RIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
.+..|+|.+|.|||||+..|+-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999964
No 157
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.82 E-value=0.001 Score=50.49 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+.+||-|.|++|+||||.|+.+..+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 378899999999999999999998765
No 158
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.80 E-value=0.001 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...++.|+|++|+|||||+..+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 6789999999999999999998875
No 159
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.79 E-value=0.00074 Score=58.15 Aligned_cols=27 Identities=44% Similarity=0.671 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 367899999999999999999998743
No 160
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.79 E-value=0.0011 Score=54.16 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 355699999999999999999987654
No 161
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.79 E-value=0.00095 Score=50.32 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=26.7
Q ss_pred HHHHHHH-hhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 160 MLDEVWG-HIADYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 160 ~~~~l~~-~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.++.+.. -+. ...++.|+|++|+|||||++.+...
T Consensus 11 ~Ld~~~~ggi~--~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 11 DFDKLIQGGIP--QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp HHHGGGTTSEE--TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCc--CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445543 344 5689999999999999999998754
No 162
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.78 E-value=0.00085 Score=55.39 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+++|+|++|+|||||++.|..-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 57889999999999999999999763
No 163
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.77 E-value=0.0011 Score=50.91 Aligned_cols=27 Identities=22% Similarity=0.111 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|.|.|+.|+||||+++.+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999997654
No 164
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.77 E-value=0.0018 Score=52.75 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=27.6
Q ss_pred HHHHHHhhc--cCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 161 LDEVWGHIA--DYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 161 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...++..+. ..+..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 444454444 356789999999999999999998654
No 165
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.77 E-value=0.0015 Score=54.82 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=28.2
Q ss_pred HHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+.......+ ...+-|+|++|+||||||+.+.+..
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3344444444333 6789999999999999999999865
No 166
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.77 E-value=0.00078 Score=55.05 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...++|+|.+|.|||||++.+.+-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999997754
No 167
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.76 E-value=0.0019 Score=54.41 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=34.6
Q ss_pred ccccchHHHHHHHHHhh---ccC--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHI---ADY--RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L---~~~--~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..++.+..++ ... ..+-+-++|++|+|||+||+.+.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 56889888777554443 322 23568899999999999999998875
No 168
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.76 E-value=0.0019 Score=55.69 Aligned_cols=46 Identities=30% Similarity=0.494 Sum_probs=35.0
Q ss_pred ccccchHHHHHHHHHhhc------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIA------DYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.++....+...+. +-...++.++|++|+||||||+.|.+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 346788777776655432 1246789999999999999999998765
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.74 E-value=0.001 Score=54.72 Aligned_cols=27 Identities=30% Similarity=0.112 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999998754
No 170
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.0016 Score=54.67 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=35.4
Q ss_pred cccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++.|.+..+++|...+. . ..++=|-++|++|+|||+||+.|.++.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 46688888888776542 1 356778899999999999999998865
No 171
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.71 E-value=0.0012 Score=53.51 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+..+++|+|++|+|||||.+.+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999754
No 172
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.71 E-value=0.00099 Score=57.35 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|.|||||++.+..-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 66899999999999999999998743
No 173
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.69 E-value=0.00079 Score=56.16 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCeE--EEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRI--IGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~v--i~I~G~~GiGKTTLa~~i~~~ 196 (211)
...+ ++|+|.+|+|||||++.+++.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 5667 999999999999999999874
No 174
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.69 E-value=0.0024 Score=48.69 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|.|.|+.|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999999876
No 175
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.68 E-value=0.001 Score=57.25 Aligned_cols=26 Identities=38% Similarity=0.635 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|+|||||++.|++-.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999999999999999999854
No 176
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.00095 Score=56.34 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 467899999999999999999998753
No 177
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.68 E-value=0.0023 Score=54.58 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=32.6
Q ss_pred ccccchHHHHHHHHHh---hccC---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGH---IADY---------RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~---L~~~---------~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|.+..+.++... +.+. -.+=+.|+|++|+||||||+.|.+..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578877666555544 3221 12338999999999999999998865
No 178
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0026 Score=46.45 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....|.|+|..|+|||||++.+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999875
No 179
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.67 E-value=0.0015 Score=52.05 Aligned_cols=34 Identities=29% Similarity=0.588 Sum_probs=27.0
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++++..++ ...+++++|++|+|||||++.+....
T Consensus 160 v~~lf~~l---~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYL---KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHH---SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHh---cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 45555555 45689999999999999999998643
No 180
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.67 E-value=0.0013 Score=52.95 Aligned_cols=27 Identities=44% Similarity=0.642 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|+|+|.+|+||||++..+....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999987654
No 181
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.67 E-value=0.0013 Score=54.07 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.+.+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999997754
No 182
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.65 E-value=0.0013 Score=51.91 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|.+|+|||||++.+....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998765
No 183
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0011 Score=57.80 Aligned_cols=27 Identities=41% Similarity=0.626 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|+|||||++.|..-.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 367899999999999999999998743
No 184
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.65 E-value=0.00099 Score=54.46 Aligned_cols=27 Identities=41% Similarity=0.479 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 366799999999999999999998754
No 185
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0025 Score=53.10 Aligned_cols=45 Identities=29% Similarity=0.410 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++.|.++.+++|...+. . ..++=|-++|++|+|||+||+.|.++.
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 45678777777766543 1 345678899999999999999999875
No 186
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.63 E-value=0.0012 Score=57.71 Aligned_cols=26 Identities=38% Similarity=0.635 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|+|||||++.+.+-.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56899999999999999999998854
No 187
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.62 E-value=0.00064 Score=50.58 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.....|+|+|.+|+|||||++.+.+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46678999999999999999998753
No 188
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.61 E-value=0.0011 Score=57.06 Aligned_cols=26 Identities=38% Similarity=0.653 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|+|||||++.+..-.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999999998753
No 189
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.60 E-value=0.0015 Score=51.89 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|+++|.+|+||||++..+....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998765
No 190
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.58 E-value=0.0021 Score=52.47 Aligned_cols=26 Identities=38% Similarity=0.424 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|+|||||++.+....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 34689999999999999999998754
No 191
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.56 E-value=0.0013 Score=57.51 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|+|||||++.+..-.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 56899999999999999999998743
No 192
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.56 E-value=0.0022 Score=53.72 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=34.9
Q ss_pred ccccchHHHHHHHHHhhcc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD--------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|.+..+..|...+.+ ...+-|-++|+.|+||||||+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3467888877777666532 134568899999999999999998765
No 193
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.55 E-value=0.0015 Score=55.37 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.. .+++|+|++|+|||||++.+..-.
T Consensus 28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 28 DE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 35 899999999999999999998743
No 194
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.53 E-value=0.001 Score=53.71 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|.|||||++.+.+-.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55699999999999999999998754
No 195
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.53 E-value=0.0016 Score=50.98 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...++.|+|++|+|||||+..+....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999988654
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.49 E-value=0.0019 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+..+|+|+|.+|+|||||.+.+.+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999864
No 197
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0016 Score=56.81 Aligned_cols=24 Identities=42% Similarity=0.636 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 174 RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+++|+|++|+|||||++.|..-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 689999999999999999998753
No 198
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.49 E-value=0.0049 Score=51.63 Aligned_cols=26 Identities=42% Similarity=0.586 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+.+|.++|.+|+||||++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987655
No 199
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.49 E-value=0.0018 Score=54.34 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.|.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 477899999999999999999998864
No 200
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.46 E-value=0.0033 Score=50.19 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhccC---CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 158 DSMLDEVWGHIADY---RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 158 ~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
......+..++... ...-+-++|+.|+|||+||+.+.+..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33444555565531 25788899999999999999999876
No 201
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.44 E-value=0.0017 Score=56.49 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|++|.|||||++.+.+-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 577899999999999999999997754
No 202
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.42 E-value=0.0045 Score=51.74 Aligned_cols=26 Identities=42% Similarity=0.407 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|.++|.+|+||||++..+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987654
No 203
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.41 E-value=0.0018 Score=56.23 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|++|.|||||++.+.+-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 577899999999999999999997754
No 204
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.41 E-value=0.0023 Score=47.27 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+...|.++|.+|+|||||++.+.+.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34556899999999999999998753
No 205
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.40 E-value=0.0021 Score=46.94 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+...|.|+|..|+|||||++.+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46678999999999999999999764
No 206
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.38 E-value=0.0022 Score=50.92 Aligned_cols=27 Identities=33% Similarity=0.714 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...++|+|+|-||+||||++-.+-...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH
Confidence 578999999999999999999876543
No 207
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.37 E-value=0.0029 Score=44.91 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
..+..|+|++|.|||||...|+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4688999999999999999986
No 208
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.37 E-value=0.0045 Score=46.46 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=26.5
Q ss_pred HHHHHHhhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIAD-YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+..+..++.. ++..-+-|+|++|+||||+|..+.+..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444444442 234579999999999999998887764
No 209
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.36 E-value=0.0051 Score=51.77 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=32.0
Q ss_pred chHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 156 GFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 156 g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....+..+..++.+.+ ..+-|.|.+|+||||++..+....
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45566677777766433 389999999999999999988765
No 210
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.36 E-value=0.0024 Score=53.18 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|-|+|+.|+||||+++.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999997653
No 211
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.36 E-value=0.0024 Score=47.36 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=21.3
Q ss_pred HHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 162 DEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 162 ~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+.+.......+.-.|.|+|..|+|||||++.+.+.
T Consensus 19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -----------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 33333334445668899999999999999988764
No 212
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.33 E-value=0.0025 Score=46.43 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....|.|+|..|+|||||++.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999999865
No 213
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.32 E-value=0.0034 Score=53.65 Aligned_cols=26 Identities=23% Similarity=0.060 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....++|+|+.|+|||||++.+.+-.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45579999999999999999997643
No 214
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.31 E-value=0.0027 Score=46.66 Aligned_cols=29 Identities=34% Similarity=0.354 Sum_probs=23.6
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 168 IADYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 168 L~~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+.....-.|.|+|..|+|||||++.+.+.
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred hccCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 34455667999999999999999998653
No 215
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.30 E-value=0.0029 Score=51.09 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|.|+|+.|+|||||+..+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45699999999999999999998754
No 216
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.30 E-value=0.0028 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+..+|+|+|.+|+|||||++.+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 57889999999999999999998654
No 217
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.29 E-value=0.0019 Score=53.77 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 041747 176 IGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 176 i~I~G~~GiGKTTLa~~i~~~~ 197 (211)
|+|+|.+|+|||||++.+.+..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 4999999999999999998754
No 218
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.28 E-value=0.0018 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 041747 174 RIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
--|+|+|.+|+|||||++.+++.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCC
Confidence 34799999999999999998764
No 219
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.26 E-value=0.0019 Score=55.67 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|.|+|++|+|||||++.+....
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhh
Confidence 356899999999999999999998865
No 220
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.24 E-value=0.0029 Score=52.97 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|.++|.+|+||||++..+-...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987654
No 221
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.24 E-value=0.0027 Score=51.57 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=27.8
Q ss_pred HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.++.. .=....++.|+|++|+|||||+..+....
T Consensus 119 ~LD~lL~g-gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGG-GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTS-SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44555431 11467899999999999999999998753
No 222
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.23 E-value=0.0016 Score=56.65 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|++|.|||||++.+.+-.
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 577899999999999999999997743
No 223
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.21 E-value=0.0027 Score=46.56 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+...|.++|.+|+|||||++.+.+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999998863
No 224
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.21 E-value=0.0076 Score=48.15 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=31.5
Q ss_pred HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747 160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV 210 (211)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv 210 (211)
.++.++.-+. ...++-|.|.+|+|||||+..+..+. -.++ ..++|+
T Consensus 57 ~LD~~lgGl~--~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~ 102 (315)
T 3bh0_A 57 ELDRMTYGYK--RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLH 102 (315)
T ss_dssp HHHHHHSSBC--TTCEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEE
T ss_pred HHHhhcCCCC--CCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEE
Confidence 4555554343 67899999999999999999987654 2222 455554
No 225
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.21 E-value=0.0054 Score=52.29 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|.|+|.+|+|||||+..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999987543
No 226
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.20 E-value=0.0028 Score=46.33 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..-.|.|+|..|+|||||++.+.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34578999999999999999988643
No 227
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.20 E-value=0.0055 Score=55.07 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=33.4
Q ss_pred ccccchHHHHHHHHHhh----cc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHI----AD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L----~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++.|.+..+++|.+.+ .. ..++=|-++|++|+|||+||+.|.++.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34567766666555543 22 245678899999999999999999865
No 228
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.17 E-value=0.0085 Score=49.35 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=26.7
Q ss_pred HHHHhhcc-CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 163 EVWGHIAD-YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 163 ~l~~~L~~-~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.++..+.. .....++|+|..|+|||||++.|-+.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 44444443 46789999999999999999998764
No 229
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.17 E-value=0.0034 Score=47.87 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....|+|+|..|+|||||++.+.+..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 56689999999999999999998754
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.17 E-value=0.0012 Score=52.69 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+++|+|++|+|||||++.+....
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 45799999999999999999997643
No 231
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.14 E-value=0.0021 Score=56.03 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|++|.|||||++.+.+-.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 577899999999999999999997643
No 232
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.14 E-value=0.0019 Score=54.11 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|.|+|.+|+||||++..+....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999987654
No 233
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0031 Score=46.15 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..-.|.|+|..|+|||||++.+.+.
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 4457899999999999999999764
No 234
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0035 Score=45.80 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..-.|.|+|..|+|||||++.+.+..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 45678999999999999999988654
No 235
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.12 E-value=0.0018 Score=56.26 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|++|.|||||++.+.+-.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 578899999999999999999987643
No 236
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.12 E-value=0.0042 Score=47.19 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=24.4
Q ss_pred HHHHH-HhhccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 161 LDEVW-GHIADYRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 161 ~~~l~-~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
+++++ .-+. ...++.|+|.+|+|||||+..+..
T Consensus 12 LD~~l~gGl~--~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 12 VDEILHGGIP--ERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp HHHHTTTSEE--TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHcCCCCC--CCcEEEEECCCCCCHHHHHHHHHH
Confidence 34443 3344 677999999999999999877644
No 237
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.11 E-value=0.0023 Score=49.69 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+...|.|.|..|+||||+++.+....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 366899999999999999999987654
No 238
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.10 E-value=0.0065 Score=50.86 Aligned_cols=43 Identities=26% Similarity=0.447 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHhhcc-----------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 155 VGFDSMLDEVWGHIAD-----------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 155 ~g~~~~~~~l~~~L~~-----------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.|.++..+.+...+.+ .....|+|+|.+|+|||||.+.+.+..
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 3566666666665532 123589999999999999999998754
No 239
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.08 E-value=0.0053 Score=51.22 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|.++|++|+||||++..+....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998765
No 240
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.0048 Score=45.28 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...--|.|+|..|+|||||++.+.+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999998765
No 241
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.05 E-value=0.0026 Score=50.55 Aligned_cols=26 Identities=38% Similarity=0.424 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+..+|+++|.+|+||||++..+....
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999987654
No 242
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.05 E-value=0.0028 Score=46.74 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
..-.|.|+|.+|+|||||++.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 55689999999999999999984
No 243
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.04 E-value=0.0038 Score=46.03 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....|.|+|..|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 56678999999999999999988753
No 244
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.04 E-value=0.0037 Score=46.57 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..-.|.|+|..|+|||||++.+.+.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 245
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.03 E-value=0.0046 Score=46.68 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.....|.|+|..|+|||||++.+.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999765
No 246
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.02 E-value=0.0039 Score=45.48 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..-.|.|+|..|+|||||++.+.+.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999998753
No 247
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.02 E-value=0.0039 Score=45.43 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..-.|.|+|..|+|||||++.+.+.
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999998754
No 248
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.01 E-value=0.0048 Score=50.36 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041747 174 RIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
.+.+|+|++|.|||||...|+.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 4999999999999999999985
No 249
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.01 E-value=0.0041 Score=57.02 Aligned_cols=25 Identities=40% Similarity=0.717 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
....+++|+|++|.|||||++.|.+
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4778999999999999999999985
No 250
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.99 E-value=0.0041 Score=45.52 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..-.|.|+|..|+|||||++.+.+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998753
No 251
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0042 Score=46.12 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..-.|.|+|..|+|||||++.+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4567899999999999999998754
No 252
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.98 E-value=0.0027 Score=55.21 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|++|.|||||++.+.+-.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 578899999999999999999987643
No 253
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.98 E-value=0.0039 Score=46.04 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..-.|.|+|..|+|||||++.+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4557889999999999999998754
No 254
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.98 E-value=0.0047 Score=50.22 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=27.1
Q ss_pred HHHHHHH--hhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWG--HIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~--~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.++. -+. ..+++.|+|.+|+|||||+..+....
T Consensus 48 ~LD~~Lg~GGl~--~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 48 SLDVALGIGGLP--RGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp HHHHHTSSSSEE--TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcc--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4555544 232 67899999999999999999887553
No 255
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.97 E-value=0.0041 Score=45.79 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+..-.|.|+|..|+|||||++.+.+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 35678999999999999999998754
No 256
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.91 E-value=0.0044 Score=46.30 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..-.|.|+|..|+|||||++.+.+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999998764
No 257
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0047 Score=45.82 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....|.|+|..|+|||||++.+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3457899999999999999999764
No 258
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.90 E-value=0.0057 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
...+..|+|++|.|||||+..|+
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45788999999999999999874
No 259
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.87 E-value=0.0038 Score=45.72 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.-.|.|+|..|+|||||++.+.+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999764
No 260
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.86 E-value=0.005 Score=50.16 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...++.|+|++|+|||||+..+....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999988764
No 261
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.86 E-value=0.0047 Score=50.52 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+..+|+|+|.+|+|||||.+.+.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 56779999999999999999998754
No 262
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.85 E-value=0.0063 Score=46.91 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....|+|+|..|+|||||.+.+.+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 5567999999999999999999654
No 263
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.85 E-value=0.0051 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKL 193 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i 193 (211)
...+++|+|++|+|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 7789999999999999999994
No 264
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.85 E-value=0.0056 Score=51.03 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
...+.+|+|++|.|||||+..|+.
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 467999999999999999999985
No 265
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.84 E-value=0.003 Score=57.84 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+.+-.
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998743
No 266
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.80 E-value=0.0074 Score=45.04 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
..+..|+|++|.||||+...|+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 4688999999999999999875
No 267
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.79 E-value=0.0056 Score=45.26 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..-.|.|+|..|+|||||++.+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 4567999999999999999998754
No 268
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.78 E-value=0.011 Score=52.86 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=35.2
Q ss_pred cccchHHHHHHHHHhhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIAD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|.+..++.+...+.. .....+-++|+.|+|||+||+.+.+..
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 478888888887777652 112368899999999999999998764
No 269
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.78 E-value=0.007 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
...++.|+|.+|+|||||+..+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 67899999999999999999764
No 270
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.77 E-value=0.0056 Score=45.17 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....|.|+|..|+|||||++.+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999999864
No 271
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.77 E-value=0.0034 Score=46.98 Aligned_cols=27 Identities=26% Similarity=0.227 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.....|.|+|..|+|||||++.+.+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998753
No 272
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.75 E-value=0.011 Score=46.02 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=27.7
Q ss_pred HHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|..++. +. ..+.++|.+|+|||||.+.+.+..
T Consensus 88 i~~L~~~l~--~~~~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 88 KVLLKKLSF--DRLARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp HHHHHHHCC--CTTCEEEEEESTTSSHHHHHHHHHTTC
T ss_pred HHHHHHHHH--HhhhheEEeCCCCCCHHHHHHHHhccc
Confidence 556666665 33 678999999999999999998754
No 273
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.72 E-value=0.012 Score=45.54 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+.-.|+++|..|+|||||++.+.+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999998753
No 274
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.71 E-value=0.0085 Score=45.92 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|.|.|+.|+||||+++.+....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998876
No 275
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.69 E-value=0.0058 Score=45.51 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..-.|.|+|..|+|||||++.+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 4457899999999999999998764
No 276
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.67 E-value=0.0079 Score=49.15 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~ 194 (211)
.+..|+|++|.|||||...|+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999986
No 277
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.67 E-value=0.008 Score=48.24 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..+++-|+|++|+||||||..+...
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3467789999999999999998764
No 278
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.67 E-value=0.0065 Score=45.43 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..-.|.|+|..|+|||||++.+.+.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 4457889999999999999998765
No 279
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.65 E-value=0.0041 Score=54.30 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+..|+|+|.+|+|||||++.|.+-
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCC
Confidence 4567999999999999999999874
No 280
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.63 E-value=0.005 Score=55.58 Aligned_cols=46 Identities=26% Similarity=0.362 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.|.+..++.|...+.- .....+.++|++|+||||||+.+.+..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 3467888888888776541 234568899999999999999998865
No 281
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.007 Score=45.47 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
....|.|+|.+|+|||||++.+.+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999864
No 282
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.60 E-value=0.0026 Score=52.63 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041747 175 IIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~i~~ 195 (211)
+++|+|.+|.|||||++.|+-
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999964
No 283
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.59 E-value=0.0052 Score=49.22 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~ 194 (211)
.+.+|+|++|.|||||+..|+
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 399999999999999999998
No 284
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.59 E-value=0.0068 Score=46.20 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....|.|-|+.|+||||+++.+.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998876
No 285
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.57 E-value=0.014 Score=45.41 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..-.|.++|..|+|||||.+.+.+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 35688999999999999999998754
No 286
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.57 E-value=0.018 Score=49.13 Aligned_cols=27 Identities=22% Similarity=0.015 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+..+|-+.|+.|+||||+++.+....
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHH
Confidence 466899999999999999999998876
No 287
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.56 E-value=0.017 Score=46.31 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...++-|+|.+|+|||||+..+...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5679999999999999999998765
No 288
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.53 E-value=0.0022 Score=47.44 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=22.9
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 168 IADYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 168 L~~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+.+.+.-.|.|+|..|+|||||++.+.+.
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 34445667899999999999999887653
No 289
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.53 E-value=0.006 Score=53.16 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=30.6
Q ss_pred ccchHHHHHHHHHhhccCCCe-----------EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 154 TVGFDSMLDEVWGHIADYRCR-----------IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~-----------vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++|.+..+..+...|.....+ -+-++|++|+|||+||+.+.+..
T Consensus 297 I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 297 IYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 567776665555544422111 47889999999999999997753
No 290
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.53 E-value=0.0091 Score=54.20 Aligned_cols=45 Identities=31% Similarity=0.338 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHhhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIAD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|.+..+..+...+.. .....+-++|+.|+|||+||+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 468888888877776642 123578899999999999999998764
No 291
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.52 E-value=0.009 Score=48.56 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.....|+++|.+|+|||||.+.+.+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999764
No 292
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.51 E-value=0.013 Score=46.47 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....|+|+|..|+|||||.+.+.+..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 56789999999999999999997653
No 293
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.49 E-value=0.0093 Score=44.50 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..+.|.|.|+.|+||||||..+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5677899999999999999998764
No 294
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.46 E-value=0.011 Score=50.53 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|-++|+.|.||||+++.+....
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999996543
No 295
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.44 E-value=0.0012 Score=50.46 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 175 IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+++|+|++|.|||||++.|..-.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 45678999999999999987643
No 296
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.39 E-value=0.0065 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....++|+|++|+|||||++.+.+.
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Confidence 5678999999999999999999765
No 297
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.39 E-value=0.02 Score=51.12 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=34.6
Q ss_pred cccchHHHHHHHHHhhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHIAD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|.+..++.+...+.. .....+-++|+.|+|||+||+.+.+..
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 467888888777776642 123478899999999999999998764
No 298
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.37 E-value=0.011 Score=53.28 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+...+++|+|++|.|||||++.|..-
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45689999999999999999998753
No 299
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.36 E-value=0.011 Score=50.67 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|.+|+|||||++.+....
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999998765
No 300
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.31 E-value=0.017 Score=48.51 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.++.-+. ...++.|.|.+|+|||||+..+....
T Consensus 192 ~LD~~~gGl~--~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 192 ELDRMTSGFQ--RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHSSBC--TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhhcCCCC--CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566654343 67799999999999999999987765
No 301
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.30 E-value=0.023 Score=44.65 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..-.++++|.+|+|||||.+.+.+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34578999999999999999998753
No 302
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.29 E-value=0.014 Score=49.33 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|-++|+.|+||||+++.+....
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999987653
No 303
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.24 E-value=0.0095 Score=43.26 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
..-.|.|+|..|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445699999999999999999854
No 304
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.22 E-value=0.0057 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
....+++|+|++|.|||||++.+.
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cCCCEEEEEeeCCCCHHHHHHHHH
Confidence 467899999999999999997653
No 305
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.21 E-value=0.0083 Score=52.95 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=18.5
Q ss_pred CCCeEEEEEcCCCCcHHHHH
Q 041747 171 YRCRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa 190 (211)
....+++|+|++|.|||||+
T Consensus 42 ~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 42 PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHh
Confidence 47789999999999999997
No 306
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.20 E-value=0.012 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..+++|+|++|.|||||++.+..-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 679999999999999999998753
No 307
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.20 E-value=0.011 Score=48.09 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=27.0
Q ss_pred HHHHHHH--hhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWG--HIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~--~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.++. -+. ..+++-|.|.+|+||||||..+....
T Consensus 50 ~LD~~Lg~GGl~--~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 50 SLDIALGAGGLP--MGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHTSSSSEE--TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcc--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4555543 232 66799999999999999999887654
No 308
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.19 E-value=0.01 Score=56.14 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+++|+|++|.|||||++.+..-.
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 577899999999999999999998743
No 309
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.18 E-value=0.027 Score=47.00 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=33.7
Q ss_pred cchHHHHHHHHHhhcc-------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 155 VGFDSMLDEVWGHIAD-------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 155 ~g~~~~~~~l~~~L~~-------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.|.++-.+.+...+.+ +....|+|+|.+|+|||||.+.+.+..
T Consensus 150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3667777777777742 245689999999999999999998754
No 310
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.17 E-value=0.023 Score=45.59 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 158 DSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 158 ~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+.+...+..++ ...+-++|+.|+||||+|+.+....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 445667777776555 4568899999999999999987653
No 311
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.12 E-value=0.037 Score=45.61 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=28.6
Q ss_pred HHHHHHhhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIAD-YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
--.++..|.. .....++|+|.+|+|||||++.|.+..
T Consensus 162 GiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 162 STRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 3345555554 467899999999999999999988754
No 312
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.08 E-value=0.017 Score=50.58 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|.+.|+.|+||||+++.+....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999997754
No 313
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.04 E-value=0.018 Score=49.89 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...+|.|.|+.|+||||+|+.+-...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999997764
No 314
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.01 E-value=0.03 Score=45.20 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...++-|+|.+|+|||||+..+...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999998765
No 315
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.91 E-value=0.018 Score=47.05 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCCeEEEEEc-CCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYG-IGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G-~~GiGKTTLa~~i~~~ 196 (211)
.+.++|+|+| -||+||||+|-.+-..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~ 167 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIA 167 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHH
Confidence 4679999995 8999999999887543
No 316
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.88 E-value=0.035 Score=43.23 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=27.8
Q ss_pred HHHHHHHhhccC--CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 160 MLDEVWGHIADY--RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 160 ~~~~l~~~L~~~--~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
-..-+..||... +..-|-++|++|+|||+||..|.+.
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 344466666532 2457999999999999999999874
No 317
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.88 E-value=0.019 Score=46.99 Aligned_cols=36 Identities=39% Similarity=0.454 Sum_probs=26.6
Q ss_pred HHHHHHH--hhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWG--HIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~--~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.++. -+. ..+++-|.|.+|+||||||..+....
T Consensus 61 ~LD~~Lg~GGl~--~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 61 SLDLALGVGGIP--RGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp HHHHHTSSSSEE--TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcc--CCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 4555543 232 56789999999999999998876654
No 318
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.86 E-value=0.012 Score=53.59 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
+...+++|+|++|.|||||.+.+.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHH
Confidence 356899999999999999999875
No 319
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.79 E-value=0.016 Score=47.82 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....|+|+|.+|+|||||.+.+.+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4456899999999999999999865
No 320
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.79 E-value=0.018 Score=45.09 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....|+|+|..|+|||||++.+.+..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 56789999999999999999998754
No 321
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.77 E-value=0.018 Score=52.67 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHH
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKL 193 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i 193 (211)
+...+++|+|++|.|||||++.+
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 35689999999999999999998
No 322
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.76 E-value=0.014 Score=55.27 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...+++|+|++|.|||||++.+.+-.
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999997643
No 323
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.75 E-value=0.028 Score=47.37 Aligned_cols=39 Identities=36% Similarity=0.579 Sum_probs=27.8
Q ss_pred cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 155 VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.|.. ..+.+...+ +...++|+|.+|+|||||++.+....
T Consensus 137 TGir-~ID~L~pi~---kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 137 TGIK-VVDLLAPYI---KGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CSCH-HHHHHSCEE---TTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred ccch-HHHHHhhhc---cCCEEEEECCCCCCccHHHHHHHhhh
Confidence 4554 344443333 44579999999999999999987764
No 324
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.69 E-value=0.056 Score=45.28 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=27.8
Q ss_pred HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.++.-|. ...++-|.|.+|+|||||+-.+..+.
T Consensus 186 ~LD~~lgGl~--~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 186 ELDRMTYGYK--RRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp HHHHHHSSBC--SSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCC--CCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 4555554343 67799999999999999999887664
No 325
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.66 E-value=0.046 Score=47.04 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+|.+.|+.|+||||+++.+....
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999997754
No 326
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.52 E-value=0.04 Score=44.52 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=27.8
Q ss_pred HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.++.-|. ...++-|.|.+|+|||||+..+..+.
T Consensus 35 ~LD~~~gGl~--~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 35 QLDNYTSGFN--KGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHHHCSBC--TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCC--CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4555554343 66799999999999999999987664
No 327
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.51 E-value=0.022 Score=43.96 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=21.6
Q ss_pred CCCeEEEEE-cCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLY-GIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~-G~~GiGKTTLa~~i~~~~ 197 (211)
...++|+|+ |-||+||||++-.+-...
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~l 52 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLL 52 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHH
Confidence 468899997 567899999999886654
No 328
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.50 E-value=0.022 Score=52.60 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHH
Q 041747 173 CRIIGLYGIGGVGKTTLLKKL 193 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i 193 (211)
..+++|+|++|.|||||++.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 589999999999999999998
No 329
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.47 E-value=0.041 Score=44.59 Aligned_cols=27 Identities=30% Similarity=0.224 Sum_probs=19.5
Q ss_pred cCCCeEEEE-EcCCCCcHHHHHHHHHhh
Q 041747 170 DYRCRIIGL-YGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 170 ~~~~~vi~I-~G~~GiGKTTLa~~i~~~ 196 (211)
+...++|.| .|.||+||||+|-.+--.
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~ 49 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVY 49 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHH
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHH
Confidence 344555555 588999999999887544
No 330
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.45 E-value=0.025 Score=45.87 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+..|+|+|..|+|||||.+.+.+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Confidence 5669999999999999999999874
No 331
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.43 E-value=0.038 Score=46.21 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=27.8
Q ss_pred HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.++.-+. ...++-|.|.+|+|||||+..+....
T Consensus 189 ~LD~~lgGl~--~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLIGTLG--PGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHCCCC--TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCcC--CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4556654343 56799999999999999999987654
No 332
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.34 E-value=0.021 Score=44.83 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=21.1
Q ss_pred CCeEEEEEc---CCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYG---IGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G---~~GiGKTTLa~~i~~~~ 197 (211)
+.++|+|++ -||+||||++-.+-...
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~l 61 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLT 61 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence 467888886 89999999999886543
No 333
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.34 E-value=0.074 Score=44.84 Aligned_cols=38 Identities=34% Similarity=0.517 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV 210 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv 210 (211)
.+...++|+|..|+|||||++.+-+.. . +.+-++++++
T Consensus 151 gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~-~~~~~v~V~~ 188 (482)
T 2ck3_D 151 AKGGKIGLFGGAGVGKTVLIMELINNV-A-KAHGGYSVFA 188 (482)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHT-T-TTCSSEEEEE
T ss_pred ccCCeeeeecCCCCChHHHHHHHHHhh-H-hhCCCEEEEE
Confidence 367899999999999999999987753 1 2233455543
No 334
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=94.33 E-value=0.041 Score=46.16 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=29.9
Q ss_pred HHHHHHHHHh--hccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 158 DSMLDEVWGH--IADYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 158 ~~~~~~l~~~--L~~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
++.++.++.. +.+..+.||+|+|...+||+||++.+++.
T Consensus 50 ~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 50 ETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp HHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4455555543 23457899999999999999999999864
No 335
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.32 E-value=0.052 Score=44.30 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 155 VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.|.+.-.+.+..++ ....|.++|..|+|||||.+.+.+.
T Consensus 147 ~gi~~L~~~I~~~~---~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 147 IGMAKVMEAINRYR---EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp BTHHHHHHHHHHHH---TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhc---ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 35565566665544 2357899999999999999999986
No 336
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.31 E-value=0.024 Score=53.83 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....++|||+.|.|||||++.+.+..
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 578899999999999999999997754
No 337
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.31 E-value=0.013 Score=55.58 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....|+|||..|.|||||++.+..-.
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 578899999999999999999997643
No 338
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.26 E-value=0.036 Score=44.20 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...++-|+|.+|+|||||+..+...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999988754
No 339
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.26 E-value=0.027 Score=47.27 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....|+|+|.+|+|||||.+.+.+.
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4678999999999999999998764
No 340
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.21 E-value=0.035 Score=45.32 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
...+..|+|.+|.|||||..+|+
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 44789999999999999999987
No 341
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.06 E-value=0.036 Score=48.16 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.6
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 170 DYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+....+|+|+|..|+|||||.+.+.+..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3567899999999999999999998754
No 342
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.03 E-value=0.052 Score=47.03 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...++-|.|.+|+||||++..+....
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35788899999999999999987754
No 343
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.00 E-value=0.075 Score=42.01 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...-.|.|+|..|+|||||++.+.+.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCChHHHHHHHHhC
Confidence 35567899999999999999988764
No 344
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=93.99 E-value=0.032 Score=45.88 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=21.4
Q ss_pred CCCeEEEEE-cCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLY-GIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~-G~~GiGKTTLa~~i~~~ 196 (211)
...++|+|+ |-||+||||++-.+-..
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~ 132 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHA 132 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHH
Confidence 457899999 77999999999887543
No 345
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.95 E-value=0.034 Score=44.64 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.-.|.|+|..|+|||||++.+.+.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~ 188 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLG 188 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSS
T ss_pred cceEEEECCCCccHHHHHHHHhCC
Confidence 347899999999999999998654
No 346
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=93.92 E-value=0.012 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHH-HHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKK-LNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~-i~~ 195 (211)
....+++|+|.+|+|||||++. ++.
T Consensus 521 ~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 521 PLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp ESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred cCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 3567999999999999999996 553
No 347
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.89 E-value=0.038 Score=45.34 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
-.-+.|+|+.|.|||||++.+....
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4467899999999999999998765
No 348
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.89 E-value=0.041 Score=44.52 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....|+|+|..|+|||||++.+.+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999764
No 349
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.85 E-value=0.072 Score=47.94 Aligned_cols=46 Identities=26% Similarity=0.362 Sum_probs=34.0
Q ss_pred ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.|.++.++.|...+.- ...+=|-++|++|.|||.||+.|.+..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence 3456788877777666431 123456789999999999999998865
No 350
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.83 E-value=0.044 Score=41.47 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
...++-|.|.+|+|||||+-.+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 56799999999999999997753
No 351
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.81 E-value=0.068 Score=43.61 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 155 VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.|.+.-.+.+..++ ....|.++|..|+|||||.+.+.+..
T Consensus 145 ~gi~~L~~~l~~~~---~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 145 QGIAELADAIEYYR---GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTHHHHHHHHHHHH---TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred cCHHHHHhhhhhhc---ccceEEEecCCCCChhHHHHHHHhhh
Confidence 35555555555544 23578999999999999999999863
No 352
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=93.79 E-value=0.02 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHH
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKL 193 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i 193 (211)
....+++|+|.+|+|||||++.+
T Consensus 666 ~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 666 PLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp ESSSEEEEECSTTSSHHHHHTTT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHH
Confidence 35679999999999999999985
No 353
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=93.76 E-value=0.039 Score=47.57 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...|.|+|..|+|||||++.+.+..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 56789999999999999999998753
No 354
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.75 E-value=0.064 Score=45.42 Aligned_cols=38 Identities=37% Similarity=0.532 Sum_probs=28.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV 210 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv 210 (211)
.+...++|+|.+|+|||+|++.+-+.. . +.+-++++++
T Consensus 163 gkGqr~gIfgg~GvGKT~L~~~l~~~~-a-~~~~~v~V~~ 200 (498)
T 1fx0_B 163 RRGGKIGLFGGAGVGKTVLIMELINNI-A-KAHGGVSVFG 200 (498)
T ss_dssp CTTCCEEEEECSSSSHHHHHHHHHHHT-T-TTCSSCEEEE
T ss_pred ccCCeEEeecCCCCCchHHHHHHHHHH-H-hhCCCEEEEE
Confidence 367789999999999999999987753 1 2234556554
No 355
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.74 E-value=0.06 Score=43.15 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 175 IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++-|.|+.|+|||||+-.+....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999987766543
No 356
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.74 E-value=0.091 Score=41.52 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=22.7
Q ss_pred cCCCeEEEEEcC-CCCcHHHHHHHHHhhh
Q 041747 170 DYRCRIIGLYGI-GGVGKTTLLKKLNNKF 197 (211)
Q Consensus 170 ~~~~~vi~I~G~-~GiGKTTLa~~i~~~~ 197 (211)
+...++|.|.|. +|+||||++..+-...
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~l 129 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVI 129 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHH
Confidence 356789999986 7899999998876543
No 357
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=93.62 E-value=0.079 Score=45.37 Aligned_cols=24 Identities=42% Similarity=0.456 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.-.|+++|.+|+|||||.+.+.+.
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 358
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.57 E-value=0.096 Score=40.78 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=22.4
Q ss_pred cCCCeEEEEEcC-CCCcHHHHHHHHHhhh
Q 041747 170 DYRCRIIGLYGI-GGVGKTTLLKKLNNKF 197 (211)
Q Consensus 170 ~~~~~vi~I~G~-~GiGKTTLa~~i~~~~ 197 (211)
+...++|.|+|. +|+||||++-.+-...
T Consensus 79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~l 107 (271)
T 3bfv_A 79 DSAVQSIVITSEAPGAGKSTIAANLAVAY 107 (271)
T ss_dssp TCCCCEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 356789999976 7899999998876543
No 359
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.55 E-value=0.055 Score=40.98 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=21.7
Q ss_pred HHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHH
Q 041747 162 DEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 162 ~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
.+++..+. +.+.+.|+|..|+||||+.....
T Consensus 67 ~~~i~~i~--~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 67 SEILEAIS--QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHH--HCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHh--cCCEEEEEeCCCCCcHHhHHHHH
Confidence 33444444 45789999999999998766543
No 360
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.47 E-value=0.049 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 175 IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.|+|+|..|+|||||.+.+.+..
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998764
No 361
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=93.47 E-value=0.12 Score=43.67 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 041747 175 IIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.|.|+|..|+|||||.+.+.+.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999998765
No 362
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=93.33 E-value=0.019 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHH
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKL 193 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i 193 (211)
....+++|+|.+|.|||||++.+
T Consensus 648 ~~Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 648 PLGTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp ESSSEEECCBCTTSSHHHHHTTT
T ss_pred cCCCEEEEEcCCCCCHHHHHHHH
Confidence 35679999999999999999985
No 363
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.26 E-value=0.0073 Score=44.41 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
..-.|.|+|..|+|||||++.+.+
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBC
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 355789999999999999988764
No 364
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.19 E-value=0.066 Score=43.63 Aligned_cols=22 Identities=45% Similarity=0.616 Sum_probs=19.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKL 193 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i 193 (211)
+...|-|+|.+|+||||+++.+
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 5667889999999999999885
No 365
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.00 E-value=0.14 Score=40.20 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=23.0
Q ss_pred ccCCCeEEEEEcC-CCCcHHHHHHHHHhhh
Q 041747 169 ADYRCRIIGLYGI-GGVGKTTLLKKLNNKF 197 (211)
Q Consensus 169 ~~~~~~vi~I~G~-~GiGKTTLa~~i~~~~ 197 (211)
.+.+.++|.|+|. +|+||||++-.+-...
T Consensus 88 ~~~~~kvI~vts~kgG~GKTtva~nLA~~l 117 (286)
T 3la6_A 88 MQAQNNVLMMTGVSPSIGMTFVCANLAAVI 117 (286)
T ss_dssp TTTTCCEEEEEESSSSSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 3457889999976 7899999999876543
No 366
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=92.99 E-value=0.055 Score=44.28 Aligned_cols=26 Identities=27% Similarity=0.123 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....|.|=|+-|+||||+++.+.+..
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L 73 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALG 73 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998765
No 367
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.95 E-value=0.13 Score=43.00 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHhhcc-------CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 155 VGFDSMLDEVWGHIAD-------YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 155 ~g~~~~~~~l~~~L~~-------~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.|.++..+.+...+.. +....|+++|.+|+|||||++.+.+.
T Consensus 170 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence 3566667777666532 34678999999999999999999854
No 368
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=92.88 E-value=0.031 Score=46.05 Aligned_cols=26 Identities=27% Similarity=0.144 Sum_probs=13.8
Q ss_pred CCCeEEEEE-cCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLY-GIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~-G~~GiGKTTLa~~i~~~ 196 (211)
...++|+|+ |-||+||||++-.+-..
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~ 135 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHA 135 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHH
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHH
Confidence 467899999 78999999988887543
No 369
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=92.85 E-value=0.1 Score=43.83 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=29.0
Q ss_pred HHHHHHHHHh--hccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 158 DSMLDEVWGH--IADYRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 158 ~~~~~~l~~~--L~~~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
++.++.|+.. +.+..+.||+|+|+.+.||+||++.++.
T Consensus 50 ~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 50 ETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp HHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHH
Confidence 4555555543 3356789999999999999999997753
No 370
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.83 E-value=0.063 Score=44.90 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
...++..|.|.+|.||||+++.+.+
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4678999999999999999988765
No 371
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.81 E-value=0.19 Score=43.39 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+...++|.|..|+|||+|+..|-+..
T Consensus 230 grGqr~~Ifgg~g~GKT~L~~~ia~~~ 256 (600)
T 3vr4_A 230 TKGGAAAVPGPFGAGKTVVQHQIAKWS 256 (600)
T ss_dssp BTTCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCEEeeecCCCccHHHHHHHHHhcc
Confidence 367899999999999999999997753
No 372
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.81 E-value=0.11 Score=43.52 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+...++|.|..|+|||||+..|.+..
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~ 175 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQA 175 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHH
Confidence 55678999999999999999998865
No 373
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.78 E-value=0.047 Score=44.14 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+..|+++|..|+|||||++.+.+.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEE
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcC
Confidence 456899999999999999998764
No 374
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.67 E-value=0.1 Score=44.28 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=26.3
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++.++.-+. ...++-|.|.+|+|||||+-.+..+.
T Consensus 232 LD~~lgGl~--~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 232 INDKTLGAR--GGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp HHHHHCCCC--TTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhHhhcccC--CCeEEEEeecCCCCchHHHHHHHHHH
Confidence 444443232 66789999999999999999887654
No 375
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=92.38 E-value=0.12 Score=45.75 Aligned_cols=27 Identities=22% Similarity=0.101 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...-.|+|+|..|+|||||++.+.+..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356679999999999999999998753
No 376
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=92.25 E-value=0.064 Score=44.69 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....|+|+|..|+|||||+..+..+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCHHHHHHHHHhh
Confidence 4467899999999999999998654
No 377
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=92.15 E-value=0.19 Score=43.14 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+...++|.|..|+|||+|+..|-+..
T Consensus 219 grGqr~~Ifg~~g~GKT~l~~~ia~~~ 245 (578)
T 3gqb_A 219 AMGGTAAIPGPFGSGKSVTQQSLAKWS 245 (578)
T ss_dssp ETTCEEEECCCTTSCHHHHHHHHHHHS
T ss_pred cCCCEEeeeCCCCccHHHHHHHHHhcc
Confidence 367889999999999999999997753
No 378
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.14 E-value=0.094 Score=45.74 Aligned_cols=26 Identities=38% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.-+++-|.|.+|+||||++..+....
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 35788999999999999998876654
No 379
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.01 E-value=0.11 Score=43.55 Aligned_cols=27 Identities=7% Similarity=0.223 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.....++|.|.+|+|||||+..|.+..
T Consensus 145 grGQr~~Ifgg~G~GKt~L~~~Ia~~~ 171 (464)
T 3gqb_B 145 VRGQKLPIFSGSGLPANEIAAQIARQA 171 (464)
T ss_dssp BTTCBCCEEEETTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHH
Confidence 356788999999999999999998765
No 380
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=91.98 E-value=0.073 Score=48.59 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=17.9
Q ss_pred CCeEEEEEcCCCCcHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLK 191 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~ 191 (211)
...+++|+|.+|+|||||+.
T Consensus 609 ~Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 609 LGVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp SSSEEEEECSTTSSHHHHHH
T ss_pred CCcEEEEEccCCCChhhhHH
Confidence 56799999999999999983
No 381
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.95 E-value=0.1 Score=41.65 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...-+.|.|.+|+||||||..+...
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 3567899999999999999998763
No 382
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=91.86 E-value=0.093 Score=44.36 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..-.|.|+|.+|+|||||.+.+.+..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~ 346 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQ 346 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999997653
No 383
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=91.79 E-value=0.043 Score=46.85 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
...+..|+|.+|.|||||+..|+-
T Consensus 59 ~~g~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 59 GGGFCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp CCSEEEEEESHHHHHHHHTHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 345999999999999999999953
No 384
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.77 E-value=0.17 Score=43.51 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+...++|.|..|+|||+|++.+-+..
T Consensus 225 gkGqr~~I~g~~g~GKT~L~~~ia~~~ 251 (588)
T 3mfy_A 225 AKGGTAAIPGPAGSGKTVTQHQLAKWS 251 (588)
T ss_dssp ETTCEEEECSCCSHHHHHHHHHHHHHS
T ss_pred ccCCeEEeecCCCCCHHHHHHHHHhcc
Confidence 367899999999999999999987643
No 385
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.84 E-value=0.3 Score=41.43 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTL-LKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTL-a~~i~~~~ 197 (211)
.....++|+|..|+|||+| +..|.|..
T Consensus 160 grGQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 160 GRGQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp BTTCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred ccCCEEEEECCCCCCchHHHHHHHHHhh
Confidence 4677899999999999999 56887754
No 386
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.12 E-value=0.19 Score=42.33 Aligned_cols=27 Identities=7% Similarity=0.260 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.....++|+|.+|+|||||+..|.+..
T Consensus 150 grGQr~~Ifgg~G~GKt~Ll~~Ia~~~ 176 (469)
T 2c61_A 150 VRGQKLPIFSASGLPHNEIALQIARQA 176 (469)
T ss_dssp BTTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 356788999999999999999998865
No 387
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.10 E-value=0.35 Score=47.71 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=28.2
Q ss_pred HHHHHHH--hhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWG--HIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~--~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.++. -+. ..+++-|+|.+|+|||||+-.+....
T Consensus 370 ~LD~lLG~GGl~--~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 370 SLDIALGAGGLP--MGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp HHHHHHSSSSEE--TTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcc--CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4555554 232 67899999999999999999987765
No 388
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.01 E-value=0.3 Score=41.44 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTL-LKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTL-a~~i~~~~ 197 (211)
.....++|+|..|+||||| +..|.+..
T Consensus 173 grGQR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 173 GRGQRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp ETTCBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred ccCCEEEEEcCCCCCccHHHHHHHHHhh
Confidence 3677899999999999999 56787754
No 389
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.88 E-value=0.46 Score=35.74 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHH-HHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTT-LLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTT-La~~i~~~~ 197 (211)
....+.-|+|+-|.|||| |.+.+++-.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~ 53 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGI 53 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788899999999999 778876654
No 390
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.88 E-value=0.35 Score=41.01 Aligned_cols=27 Identities=26% Similarity=0.144 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHH-HHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLL-KKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa-~~i~~~~ 197 (211)
.....++|.|..|+|||+|+ ..|.|..
T Consensus 160 grGQR~~Ifg~~g~GKT~l~l~~I~n~~ 187 (513)
T 3oaa_A 160 GRGQRELIIGDRQTGKTALAIDAIINQR 187 (513)
T ss_dssp BTTCBCEEEESSSSSHHHHHHHHHHTTS
T ss_pred ccCCEEEeecCCCCCcchHHHHHHHhhc
Confidence 36678999999999999995 6777743
No 391
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.82 E-value=0.19 Score=43.85 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 174 RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.+.-|.|++|.||||++..+....
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 467799999999999887776543
No 392
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=89.57 E-value=0.4 Score=39.23 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=28.8
Q ss_pred ccchHHHHHHHHHhhc---cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 154 TVGFDSMLDEVWGHIA---DYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 154 ~~g~~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++|......++...+. ..+..| -|.|..|+|||++|+.++...
T Consensus 139 ~ig~s~~m~~l~~~i~~~a~~~~~v-li~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKISCAECPV-LITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHTTCCSCE-EEECSTTSSHHHHHHHHHHHS
T ss_pred hhhccHHhhHHHHHHHHhcCCCCCe-EEecCCCcCHHHHHHHHHHhc
Confidence 3444344444444433 344444 899999999999999998754
No 393
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=89.52 E-value=0.2 Score=40.98 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+..-|+|+|.+.+|||||.+.+-+.
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~ 95 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGT 95 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSB
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999764
No 394
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=89.44 E-value=0.19 Score=43.82 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
..-.|+|+|..|+|||||...+...
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHh
Confidence 4557889999999999999998643
No 395
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=89.40 E-value=0.41 Score=41.92 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=20.1
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHH-HHHHh
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLL-KKLNN 195 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa-~~i~~ 195 (211)
.+-+...|. ...+.-|.||+|+|||+.+ ..|+.
T Consensus 195 ~~AV~~al~--~~~~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 195 KEAVLFALS--QKELAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp HHHHHHHHH--CSSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCceEEECCCCCCHHHHHHHHHHH
Confidence 333444443 3346668899999998654 44443
No 396
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=89.35 E-value=0.24 Score=39.48 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=19.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
...-+-|.|.+|+||||||-.+..
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 445678899999999999988754
No 397
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=89.30 E-value=0.19 Score=42.51 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...--|.|+|..|+|||||+..+..+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 35567889999999999999998654
No 398
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=89.21 E-value=0.29 Score=42.56 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
....|+|+|..++|||||+..+..
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Confidence 455799999999999999998854
No 399
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=88.87 E-value=0.59 Score=36.98 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..-+|.+=|+-|.||+|.++.|+...
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~L 110 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANM 110 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 44566677999999999999999876
No 400
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=88.84 E-value=0.083 Score=44.74 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 174 RIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
-.|+|+|.+|+|||||.+.+.+..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~ 267 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNED 267 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHT
T ss_pred CEEEEECcCCCcHHHHHHHHHCCC
Confidence 468899999999999999998764
No 401
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.50 E-value=0.25 Score=41.90 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTL-LKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTL-a~~i~~~~ 197 (211)
.+...++|+|..|+|||+| +..|.|..
T Consensus 161 grGQR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 161 GRGQRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp BTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred ccCCEEEEecCCCCCccHHHHHHHHHhh
Confidence 3567889999999999999 56887754
No 402
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=88.41 E-value=0.053 Score=45.15 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.....|+|+|..|+|||||++.+.+.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~ 57 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQ 57 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcC
Confidence 35678999999999999999887654
No 403
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=88.41 E-value=0.18 Score=42.50 Aligned_cols=25 Identities=24% Similarity=0.073 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
+....|+|+|..++|||||+..+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 4556799999999999999998753
No 404
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.40 E-value=0.55 Score=46.37 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=28.3
Q ss_pred HHHHHH--HhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVW--GHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~--~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++.++ .++. ..+.+-++|+.|+||||||..+-...
T Consensus 1068 ~Ld~~lg~ggi~--~g~~vll~G~~GtGKT~la~~~~~ea 1105 (2050)
T 3cmu_A 1068 SLDIALGAGGLP--MGRIVEIYGPESSGKTTLTLQVIAAA 1105 (2050)
T ss_dssp HHHHHHSSSSEE--TTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcC--CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 445565 2554 78899999999999999999987654
No 405
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=88.38 E-value=0.49 Score=40.90 Aligned_cols=37 Identities=35% Similarity=0.504 Sum_probs=23.5
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
++.++.-+......++-+.|.||+||||++-.+--..
T Consensus 315 l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l 351 (589)
T 1ihu_A 315 LSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRL 351 (589)
T ss_dssp HHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHH
Confidence 3344443333344555567999999999988775443
No 406
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=88.27 E-value=0.63 Score=39.67 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+...+.|.|+.|+||||+++.+...
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999987653
No 407
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.22 E-value=0.58 Score=38.02 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=29.4
Q ss_pred cccchHHHHHHHHHhh---ccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 153 ETVGFDSMLDEVWGHI---ADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 153 ~~~g~~~~~~~l~~~L---~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++|......++...+ ...... +-|.|..|+||+++|+.++...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~-vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAP-VLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSC-EEEECCTTSSHHHHHHHHHHHH
T ss_pred cccccchHHHHHHhhhhhhhccchh-heEEeCCCchHHHHHHHHHHhc
Confidence 3556544444444443 223333 5589999999999999999865
No 408
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.10 E-value=0.36 Score=43.32 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=23.2
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
.+.+...+. +..++.|+|+.|.||||++..+..
T Consensus 99 ~~~i~~~l~--~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 99 RDEFLKLYQ--NNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp HHHHHHHHH--HCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCeEEEECCCCCCHHHHHHHHHH
Confidence 344444444 456899999999999997666543
No 409
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.09 E-value=0.33 Score=47.12 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+++=|+|+.|.|||+||..+..+-
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHh
Confidence 45779999999999999999988754
No 410
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.95 E-value=0.31 Score=43.95 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+.-|.|++|+||||++..+....
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3577799999999999887776543
No 411
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.00 E-value=0.48 Score=40.22 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTL-LKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTL-a~~i~~~~ 197 (211)
.....++|+|..|+|||+| +..|.|..
T Consensus 160 grGQR~~I~g~~g~GKT~Lal~~I~~q~ 187 (510)
T 2ck3_A 160 GRGQRELIIGDRQTGKTSIAIDTIINQK 187 (510)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 3677899999999999999 66777765
No 412
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.88 E-value=0.44 Score=39.41 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
...-+.|+|+.|+|||++++.+....
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~ 77 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTG 77 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999998776654
No 413
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=86.69 E-value=0.41 Score=40.81 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=17.7
Q ss_pred CCeEEEEEcCCCCcHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLK 191 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~ 191 (211)
+..++.+.|.+|.|||||+.
T Consensus 212 ~g~~~~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 212 QGDVTVFFGLSGTGKTTLSA 231 (524)
T ss_dssp TCCEEEEECCTTSSHHHHHC
T ss_pred CCCEEEEEccCCcchhhhhh
Confidence 45789999999999999985
No 414
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=86.29 E-value=0.44 Score=40.66 Aligned_cols=21 Identities=33% Similarity=0.639 Sum_probs=18.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKK 192 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~ 192 (211)
+..++.+.|.+|.|||||+..
T Consensus 240 ~g~~~lffGlSGtGKTTLs~d 260 (540)
T 2olr_A 240 KGDVAVFFGLSGTGKTTLSTD 260 (540)
T ss_dssp TSCEEEEECSTTSSHHHHHCC
T ss_pred CCCEEEEEccCCCCHHHHhcC
Confidence 457899999999999999853
No 415
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=86.12 E-value=0.37 Score=41.09 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKK 192 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~ 192 (211)
+-.++.+.|.+|.|||||+..
T Consensus 224 ~g~~~~ffGlSGtGKTtLs~~ 244 (529)
T 1j3b_A 224 EGDVAVFFGLSGTGKTTLSTD 244 (529)
T ss_dssp TCCEEEEEECTTSCHHHHTCB
T ss_pred CCcEEEEEccccCChhhHhhc
Confidence 446888899999999999965
No 416
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=85.83 E-value=0.51 Score=40.59 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLN 194 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~ 194 (211)
++|=|+|+|-.+.|||||+-.+.
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEEeCCCCCHHHHHHHHH
Confidence 78899999999999999999874
No 417
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=85.47 E-value=0.49 Score=42.63 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=18.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
..+.-|.|++|.||||++..+..
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34677999999999988776644
No 418
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=85.29 E-value=0.46 Score=40.59 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=17.0
Q ss_pred eEEEEEcCCCCcHHHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLLKK 192 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~ 192 (211)
.++.+.|.+|.|||||+..
T Consensus 236 ~~~~ffGlSGtGKTTLs~d 254 (532)
T 1ytm_A 236 NTAIFFGLSGTGKTTLSTD 254 (532)
T ss_dssp SEEEEECCTTSSHHHHHCC
T ss_pred eEEEEEecCCCCHHHHhhC
Confidence 6899999999999999853
No 419
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.50 E-value=0.63 Score=45.26 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..++|=|+|+.|+||||||-++....
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~ 1455 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA 1455 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999988654
No 420
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=84.14 E-value=0.51 Score=42.71 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=20.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHH-HHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKK-LNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~-i~~ 195 (211)
+.-+.+.|.|.+|+||+|||-- ||.
T Consensus 34 P~~~l~viTGvSGSGKSSLafdtl~a 59 (842)
T 2vf7_A 34 PRDALVVFTGVSGSGKSSLAFGTLYA 59 (842)
T ss_dssp ESSSEEEEESSTTSSHHHHHTTTHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999954 443
No 421
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=83.87 E-value=1.3 Score=33.19 Aligned_cols=27 Identities=19% Similarity=0.000 Sum_probs=20.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....+.-++|.-|.||||.+-.+..+.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356788899999999998776654443
No 422
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=82.53 E-value=0.57 Score=35.79 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=15.3
Q ss_pred EcCCCCcHHHHHHHHHh
Q 041747 179 YGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 179 ~G~~GiGKTTLa~~i~~ 195 (211)
.|..|+|||||++.+.+
T Consensus 34 ~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 34 KGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp TTTCCCSHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHh
Confidence 48889999999999986
No 423
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=82.38 E-value=1.8 Score=37.41 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..-+.|.|..|.|||++++.+.-..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999876544
No 424
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=81.44 E-value=1.7 Score=38.95 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+..|+|+|..++|||||.+.+.+.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~ 74 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGR 74 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 6789999999999999999999875
No 425
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=80.74 E-value=0.82 Score=41.95 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=20.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHH-HHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKK-LNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~-i~~ 195 (211)
+.-+.+.|.|.+|+||++||-- ||.
T Consensus 42 P~~~lvv~tG~SGSGKSSLafdtlya 67 (972)
T 2r6f_A 42 PRGKLVVLTGLSGSGKSSLAFDTIYA 67 (972)
T ss_dssp ETTSEEEEEESTTSSHHHHHTTTHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999964 443
No 426
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=80.63 E-value=0.79 Score=39.84 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=14.9
Q ss_pred eEEEEEcCCCCcHHHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLLKK 192 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~ 192 (211)
..+-|.|.+|+||||.+-.
T Consensus 23 ~~~lV~a~aGsGKT~~l~~ 41 (647)
T 3lfu_A 23 SNLLVLAGAGSGKTRVLVH 41 (647)
T ss_dssp SCEEEEECTTSCHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHH
Confidence 3467899999999987544
No 427
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=80.61 E-value=0.83 Score=42.03 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=20.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHH-HHh
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKK-LNN 195 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~-i~~ 195 (211)
+.-+.+.|.|.+|+||++||-- ||.
T Consensus 44 P~~~lvv~tG~SGSGKSSLafdtlya 69 (993)
T 2ygr_A 44 PRDALIVFTGLSGSGKSSLAFDTIFA 69 (993)
T ss_dssp ESSSEEEEEESTTSSHHHHHTTTHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHH
Confidence 3567899999999999999964 443
No 428
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=80.09 E-value=0.96 Score=33.41 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=17.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 173 CRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...|-|++..|.||||+|--+--.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalR 51 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAAR 51 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345666777779999999776443
No 429
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=79.99 E-value=2.4 Score=31.90 Aligned_cols=21 Identities=24% Similarity=0.074 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 041747 176 IGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 176 i~I~G~~GiGKTTLa~~i~~~ 196 (211)
+-|+|+.|.|||.++..+...
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 678899999999999877654
No 430
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=79.14 E-value=1.1 Score=45.70 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=22.5
Q ss_pred HHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 164 VWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 164 l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
++..+.. ..+-+=++|+.|+|||+||+.+...
T Consensus 1259 ll~~~l~-~~~~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A 1259 IFYDLLN-SKRGIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp HHHHHHH-HTCEEEEECSTTSSHHHHHHHHHHS
T ss_pred HHHHHHH-CCCeEEEECCCCCCHHHHHHHHHhc
Confidence 3443333 3356678999999999999776654
No 431
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=79.07 E-value=1.9 Score=32.98 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=23.7
Q ss_pred hccCCCeEEEEEcCC-CCcHHHHHHHHHhhh
Q 041747 168 IADYRCRIIGLYGIG-GVGKTTLLKKLNNKF 197 (211)
Q Consensus 168 L~~~~~~vi~I~G~~-GiGKTTLa~~i~~~~ 197 (211)
+..++.+.|-|.|.+ |+||||++-.+....
T Consensus 21 ~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l 51 (251)
T 3fgn_A 21 YFQSHMTILVVTGTGTGVGKTVVCAALASAA 51 (251)
T ss_dssp -CCSSCEEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred hcccCCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 334567889999997 899999998887655
No 432
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=78.82 E-value=1.4 Score=41.50 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....|+|+|..|+|||||+..+.+.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 4467999999999999999998764
No 433
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=78.69 E-value=0.81 Score=41.84 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=19.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHH-HHh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKK-LNN 195 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~-i~~ 195 (211)
.-+.+.|.|.+|+||++||-- ||.
T Consensus 23 ~~~l~v~tG~SGSGKSsLafdtl~a 47 (916)
T 3pih_A 23 KNRLVVITGVSGSGKSSLAMDTIYA 47 (916)
T ss_dssp TTSEEEEEESTTSSSHHHHTTTHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 567899999999999999943 554
No 434
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=77.18 E-value=16 Score=25.52 Aligned_cols=50 Identities=10% Similarity=0.215 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHHHHHHHHH
Q 041747 32 LNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDVI 84 (211)
Q Consensus 32 v~~L~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~v~~~~~~~ed~ 84 (211)
++.+.+++..++..+..++......+ ..+...+..|+.+...-|...++.
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq---~EN~~LV~RWM~rk~qEAe~MN~a 147 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLK---KEHSQLVARWLKKTEKETEAMNSE 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444333332222 223466777877766655555444
No 435
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=76.44 E-value=1.8 Score=36.65 Aligned_cols=41 Identities=12% Similarity=0.030 Sum_probs=29.3
Q ss_pred ccchHHHHHHHHHhhccCC-----CeEEEEEcCCCCcHHHHHHHH-Hh
Q 041747 154 TVGFDSMLDEVWGHIADYR-----CRIIGLYGIGGVGKTTLLKKL-NN 195 (211)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~-----~~vi~I~G~~GiGKTTLa~~i-~~ 195 (211)
++|.+..+.-|+-.|.... ---|-++|.+|+ ||+||+.+ ..
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~ 261 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDH 261 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHH
Confidence 7788776655555554211 015889999999 99999999 54
No 436
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=76.20 E-value=3.8 Score=34.74 Aligned_cols=39 Identities=33% Similarity=0.300 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcc-CC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 159 SMLDEVWGHIAD-YR-CRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 159 ~~~~~l~~~L~~-~~-~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+-++-.+|.+ .+ .-+|.+=|+-|.||+|.++.|+...
T Consensus 27 ~~L~~lQ~~~~~~~~~~vlIvfEG~D~AGKg~~Ik~l~~~l 67 (500)
T 3czp_A 27 EALLEAQFELKQQARFPVIILINGIEGAGKGETVKLLNEWM 67 (500)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEEEECTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCcCCCCHHHHHHHHHHhc
Confidence 344455555554 34 4455666999999999999999875
No 437
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=74.91 E-value=1.9 Score=34.84 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=17.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKL 193 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i 193 (211)
+.-.+-+.|.|++||||+.+.+
T Consensus 31 ~~~klLlLG~geSGKST~~KQm 52 (353)
T 1cip_A 31 REVKLLLLGAGESGKSTIVKQM 52 (353)
T ss_dssp CEEEEEEECSTTSSHHHHHHHH
T ss_pred ccceEEEEcCCCCCchhHHHHH
Confidence 3445667899999999997764
No 438
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=74.41 E-value=5.9 Score=28.94 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=13.3
Q ss_pred eEEEEEcCCCCcHHHH
Q 041747 174 RIIGLYGIGGVGKTTL 189 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTL 189 (211)
+-+-++++.|.|||..
T Consensus 52 ~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 3477889999999976
No 439
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=73.55 E-value=4.4 Score=34.37 Aligned_cols=32 Identities=9% Similarity=0.147 Sum_probs=23.4
Q ss_pred HhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 166 GHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 166 ~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
.++...+.. +|.+=|+-|.||+|.++.|+...
T Consensus 292 ~~~~~~~~~vlIvfEG~DaAGKg~~Ik~l~~~l 324 (500)
T 3czp_A 292 RDKRFRQHSLVAVFEGNDAAGKGGAIRRVTDAL 324 (500)
T ss_dssp HSGGGGGCEEEEEEEESTTSCHHHHHHHHHTTS
T ss_pred HHHHhCCCCEEEEEeccCCCCHHHHHHHHHHhc
Confidence 333334444 55556999999999999999875
No 440
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=73.23 E-value=2 Score=43.80 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...-|-++|+.|.||||+.+.+.+-
T Consensus 922 ~r~gvmlvGptgsGKTt~~~~La~a 946 (2695)
T 4akg_A 922 TQQALILVGKAGCGKTATWKTVIDA 946 (2695)
T ss_dssp HCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred hcceEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999988764
No 441
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=71.35 E-value=4.6 Score=31.99 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=20.7
Q ss_pred CCeEEEE--EcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGL--YGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I--~G~~GiGKTTLa~~i~~~~ 197 (211)
.+.||+| .-.||.|||-++..+.+..
T Consensus 35 ~vPVI~VGNitvGGTGKTP~vi~L~~~L 62 (315)
T 4ehx_A 35 PVPVISVGNLSVGGSGKTSFVMYLADLL 62 (315)
T ss_dssp SSCEEEEEESBSSCCSHHHHHHHHHHHT
T ss_pred CCCEEEECCEEeCCCChHHHHHHHHHHH
Confidence 4556655 4589999999999999876
No 442
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=71.04 E-value=6 Score=29.25 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=13.4
Q ss_pred eEEEEEcCCCCcHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa 190 (211)
+-+-+.++.|.|||+.+
T Consensus 63 ~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEEeCCCCcHHHHH
Confidence 44668899999999853
No 443
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=70.94 E-value=8.1 Score=30.62 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=19.3
Q ss_pred HHHhhccCCCeEEEEEcCCCCcHHHHHHH
Q 041747 164 VWGHIADYRCRIIGLYGIGGVGKTTLLKK 192 (211)
Q Consensus 164 l~~~L~~~~~~vi~I~G~~GiGKTTLa~~ 192 (211)
.+..+.+.+.+-+-+.++.|.|||..+-.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~~~ 63 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAFSL 63 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHHHH
Confidence 33444433446677889999999986543
No 444
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=70.65 E-value=4.5 Score=31.67 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 041747 175 IIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+|.+=|+.|.||.+.++.|....
T Consensus 77 lIvfEG~DaAGKgg~Ik~l~~~l 99 (289)
T 3rhf_A 77 LLILQAMDTAGKGGIVSHVVGAM 99 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCChHHHHHHHHHhc
Confidence 44445999999999999999875
No 445
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=69.80 E-value=2.5 Score=30.60 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=17.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 041747 174 RIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
+-+-|+++.|.|||..+-.+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAK 70 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999998876554
No 446
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=68.96 E-value=2.4 Score=33.24 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
..+.|-|+|+ ||+||++.+....
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~ 126 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEF 126 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHC
T ss_pred CCCEEEEECC---CHHHHHHHHHhhC
Confidence 4577889998 6999999998865
No 447
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=68.42 E-value=8.8 Score=30.71 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=18.0
Q ss_pred HHhhccCCCeEEEEEcCCCCcHHHHH
Q 041747 165 WGHIADYRCRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 165 ~~~L~~~~~~vi~I~G~~GiGKTTLa 190 (211)
+..+...+.+.+-++++.|.|||..+
T Consensus 56 i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 56 LPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHhcCCCCeEEEECCCCchHHHHH
Confidence 33334333466778899999999865
No 448
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=67.37 E-value=3.4 Score=33.98 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=17.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKL 193 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i 193 (211)
+.-.+-+.|.|++||||+.+.+
T Consensus 39 ~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 39 ATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp TEEEEEEEESTTSSHHHHHHHH
T ss_pred ccceEEEecCCCCchhhHHHHH
Confidence 3456677899999999998874
No 449
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=65.72 E-value=5.1 Score=28.81 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=14.1
Q ss_pred eEEEEEcCCCCcHHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLLK 191 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~ 191 (211)
+-+-+.++.|.|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 447788999999998633
No 450
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=64.69 E-value=9.7 Score=29.81 Aligned_cols=20 Identities=25% Similarity=0.066 Sum_probs=15.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLLKKL 193 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i 193 (211)
+.+-+.++.|.|||+.+-..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~ 64 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIP 64 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHH
Confidence 45678899999999876543
No 451
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=63.81 E-value=12 Score=26.75 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=13.8
Q ss_pred eEEEEEcCCCCcHHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLLK 191 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~ 191 (211)
+-+-++++.|.|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 447788999999996443
No 452
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=63.26 E-value=4.6 Score=35.62 Aligned_cols=21 Identities=29% Similarity=0.161 Sum_probs=17.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTLLKK 192 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~ 192 (211)
+.+.+-++|+.|.|||+.+-.
T Consensus 154 ~rk~vlv~apTGSGKT~~al~ 174 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQ 174 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 568899999999999995443
No 453
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=62.59 E-value=18 Score=28.93 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=20.1
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHH
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa 190 (211)
...++..+.+.--..|--+|..|.|||.-+
T Consensus 72 ~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 72 VQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp THHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 444555555444445667999999999754
No 454
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=62.32 E-value=14 Score=22.49 Aligned_cols=14 Identities=7% Similarity=0.081 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHH
Q 041747 69 GWFDAVESQIKEVD 82 (211)
Q Consensus 69 ~Wl~~v~~~~~~~e 82 (211)
..++++.++.|.++
T Consensus 55 ~l~~~I~~ILYat~ 68 (75)
T 3mtu_A 55 PVLQRIVDILYATD 68 (75)
T ss_dssp HHHHHHHHHHHCBT
T ss_pred HHHHHHHHHHhccC
Confidence 56666767666554
No 455
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=61.28 E-value=13 Score=30.78 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=23.6
Q ss_pred HHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747 160 MLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNN 195 (211)
Q Consensus 160 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~ 195 (211)
.+..+++.|.+ .+.++|+|.|.+ ||||-+..+..
T Consensus 37 r~~~ll~~lg~p~~~~~vI~VtGTN--GKgSt~~~l~~ 72 (437)
T 3nrs_A 37 RVKQVAERLDLLKPAPKIFTVAGTN--GKGTTCCTLEA 72 (437)
T ss_dssp HHHHHHHHTTCSCSSSEEEEEECSS--SHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccCCEEEEECCc--ChHHHHHHHHH
Confidence 55666666643 467899999987 58776666654
No 456
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=60.80 E-value=16 Score=30.19 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=18.9
Q ss_pred HHHhhccCCCeEEEEEcCCCCcHHHHH
Q 041747 164 VWGHIADYRCRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 164 l~~~L~~~~~~vi~I~G~~GiGKTTLa 190 (211)
.+..+.....+.+-+.|+.|.|||..+
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 333444334577889999999999763
No 457
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=60.10 E-value=18 Score=29.00 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=19.6
Q ss_pred HHHHHhhccCCCeEEEEEcCCCCcHHHHH
Q 041747 162 DEVWGHIADYRCRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 162 ~~l~~~L~~~~~~vi~I~G~~GiGKTTLa 190 (211)
..++..+.+.--..|--+|..|.|||.-+
T Consensus 67 ~plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 67 APIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34555445444445666999999999865
No 458
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=60.08 E-value=13 Score=26.93 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=14.2
Q ss_pred EEEEEcCCCCcHHHHHHH
Q 041747 175 IIGLYGIGGVGKTTLLKK 192 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~ 192 (211)
-+-+.++.|.|||..+-.
T Consensus 53 ~~li~~~TGsGKT~~~~~ 70 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVL 70 (220)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred CEEEECCCCCchhhhhhH
Confidence 367789999999976554
No 459
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=58.99 E-value=14 Score=30.25 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=23.8
Q ss_pred HHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 161 LDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 161 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
...+++.|.+ .+.++|+|.|.+ ||||-...+..=
T Consensus 35 ~~~~l~~lg~p~~~~~vI~VTGTn--GKtTT~~~l~~i 70 (422)
T 1w78_A 35 VSLVAARLGVLKPAPFVFTVAGTN--GKGTTCRTLESI 70 (422)
T ss_dssp HHHHHHHHTCSSCSSEEEEEECSS--CHHHHHHHHHHH
T ss_pred HHHHHHHcCCcccCCcEEEEeCCc--ChHHHHHHHHHH
Confidence 4555666654 457889998886 698888777654
No 460
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=58.08 E-value=5.7 Score=35.21 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.0
Q ss_pred EEEEEcCCCCcHHHHHHH
Q 041747 175 IIGLYGIGGVGKTTLLKK 192 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~~ 192 (211)
-+-|.|.+|+|||+.+-.
T Consensus 26 ~~lV~AgAGSGKT~vL~~ 43 (724)
T 1pjr_A 26 PLLIMAGAGSGKTRVLTH 43 (724)
T ss_dssp CEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCHHHHHHH
Confidence 456889999999986544
No 461
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=56.67 E-value=26 Score=28.29 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=20.7
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHH
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa 190 (211)
...++..+.+.--..|--+|..|.|||.-+
T Consensus 73 ~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 73 AKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp THHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 345555555444456777999999999765
No 462
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=56.56 E-value=29 Score=27.92 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=21.5
Q ss_pred HHHHHHHhhccCCCeEEEEEcCCCCcHHHHH
Q 041747 160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa 190 (211)
....++..+.+.--..|--+|..|.|||.-+
T Consensus 68 ~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 68 SIKPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 4455665555544456677999999999765
No 463
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=56.44 E-value=15 Score=30.16 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=24.1
Q ss_pred HHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 160 MLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 160 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
....++..|.. .+.++|+|.|.+ ||||-...+..=.
T Consensus 24 ~~~~~l~~lg~p~~~~~vI~VtGTn--GKtTT~~~l~~iL 61 (428)
T 1jbw_A 24 RILTLLHALGNPQQQGRYIHVTGTN--GKGSAANAIAHVL 61 (428)
T ss_dssp HHHHHHHHTTCGGGSSCEEEEECSS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhcCcEEEEECCC--ChHHHHHHHHHHH
Confidence 34445555543 457899998886 6998888876543
No 464
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=56.38 E-value=23 Score=28.48 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=20.1
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHH
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa 190 (211)
...++..+.+.--..|--+|..|.|||.-+
T Consensus 78 ~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 78 FKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp THHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 344555555444456667999999999754
No 465
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=56.31 E-value=21 Score=28.86 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=28.5
Q ss_pred HHHHhhccCCCeEEEEEcCCCCcHHHHH--------------HHHHhhhhhcCCCccEEEEe
Q 041747 163 EVWGHIADYRCRIIGLYGIGGVGKTTLL--------------KKLNNKFLDINHHFDLVIWV 210 (211)
Q Consensus 163 ~l~~~L~~~~~~vi~I~G~~GiGKTTLa--------------~~i~~~~~~v~~~F~~~~wv 210 (211)
.++..+.+.--..|--+|..|.|||.-+ +.||+........+++.++|
T Consensus 70 ~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~v 131 (369)
T 3cob_A 70 YLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKA 131 (369)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred hhhHhhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEE
Confidence 3444444443445667899999999765 56776541223335555554
No 466
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=55.86 E-value=16 Score=30.21 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=23.3
Q ss_pred HHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 160 MLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 160 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....++..|.. .+.++|+|.|.+ ||||-+..+..=
T Consensus 37 ~~~~~l~~lg~p~~~~~vI~VTGTn--GKtTT~~~l~~i 73 (442)
T 1o5z_A 37 RISMLLSKLGNPHLEYKTIHIGGTN--GKGSVANMVSNI 73 (442)
T ss_dssp HHHHHHHHTTCGGGSSEEEEEECSS--SHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhcCCEEEEECCc--CHHHHHHHHHHH
Confidence 34455555543 367888888886 688888777653
No 467
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=55.38 E-value=30 Score=28.06 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=20.3
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHH
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa 190 (211)
...++..+++.--..|--+|..|.|||.-+
T Consensus 90 ~~plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 90 FRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 445555555444456667999999999754
No 468
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=55.37 E-value=24 Score=30.04 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=21.2
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
++.++..+.. +.+-+-+++..|.|||..+-.+...
T Consensus 187 i~~~~~~~~~-~~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 187 INRAVQSVLQ-GKKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp HHHHHHHHHT-TCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCceEEEecCCCChHHHHHHHHHH
Confidence 3344433332 3344567799999999887655443
No 469
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=55.29 E-value=12 Score=28.89 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=15.4
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLLKKL 193 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~i 193 (211)
+-+-++++.|.|||..+-..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~ 51 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIP 51 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHH
Confidence 35778899999999865543
No 470
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.27 E-value=13 Score=38.76 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747 176 IGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV 210 (211)
Q Consensus 176 i~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv 210 (211)
+-+||++|.||||.-+.+..-. ..-.....+..+
T Consensus 909 vmlVGp~gsGKTt~~~~L~~al-~~l~~~~~~~~~ 942 (3245)
T 3vkg_A 909 VMMVGPSGGGKTTSWEVYLEAI-EQVDNIKSEAHV 942 (3245)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH-TTTTTCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHhhCCCceEEE
No 471
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=55.24 E-value=25 Score=29.90 Aligned_cols=18 Identities=22% Similarity=0.047 Sum_probs=14.5
Q ss_pred CCeEEEEEcCCCCcHHHH
Q 041747 172 RCRIIGLYGIGGVGKTTL 189 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTL 189 (211)
..+-+-+.++.|.|||..
T Consensus 59 ~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEEcCCCcHHHHH
Confidence 456677889999999983
No 472
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=54.51 E-value=6.7 Score=30.72 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccE
Q 041747 171 YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDL 206 (211)
Q Consensus 171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~ 206 (211)
...+-|-|+|+ ||+||.+.+..+. .+.|..
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~---p~~f~~ 127 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEY---PDKFGS 127 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHC---TTTEEC
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhC---hhhccc
Confidence 35577888888 4999999999875 345544
No 473
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=54.38 E-value=24 Score=27.91 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=14.4
Q ss_pred eEEEEEcCCCCcHHHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLLKK 192 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa~~ 192 (211)
+-+-+.++.|.|||..+-.
T Consensus 46 ~~~lv~a~TGsGKT~~~~~ 64 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVL 64 (391)
T ss_dssp CCEEEECSSCSSHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHH
Confidence 3467789999999986543
No 474
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.29 E-value=36 Score=21.05 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=37.2
Q ss_pred hhHhHHHHHhhhccchhhchhHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHHHHHHH
Q 041747 9 DILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVD 82 (211)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~v~~L~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~v~~~~~~~e 82 (211)
.++.+|-..+..-+.-+.-+.-++++|+.+-..+......+....+.-......-......|=.+++.+...++
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35555555555544444445555666666655555544443322111111111112556678888887766544
No 475
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=53.49 E-value=28 Score=29.31 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=17.2
Q ss_pred HHhhccCCCeEEEEEcCCCCcHHHH
Q 041747 165 WGHIADYRCRIIGLYGIGGVGKTTL 189 (211)
Q Consensus 165 ~~~L~~~~~~vi~I~G~~GiGKTTL 189 (211)
+..+.....+-+-++++.|.|||..
T Consensus 103 i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 103 IKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHhcCCCCeEEEECCCCCCccHH
Confidence 3333333456778889999999973
No 476
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=52.05 E-value=18 Score=28.74 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=13.7
Q ss_pred EEEEcCCCCcHHHHHHH
Q 041747 176 IGLYGIGGVGKTTLLKK 192 (211)
Q Consensus 176 i~I~G~~GiGKTTLa~~ 192 (211)
+-+.++.|.|||+.+..
T Consensus 61 ~li~a~TGsGKT~~~~~ 77 (400)
T 1s2m_A 61 ILARAKNGTGKTAAFVI 77 (400)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCcHHHHHHHH
Confidence 67889999999986544
No 477
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=51.90 E-value=30 Score=25.79 Aligned_cols=17 Identities=35% Similarity=0.204 Sum_probs=13.5
Q ss_pred eEEEEEcCCCCcHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa 190 (211)
+-+-+.++.|.|||..+
T Consensus 81 ~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAF 97 (249)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEEcCCCCCchhHh
Confidence 44677899999999753
No 478
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=51.72 E-value=35 Score=27.12 Aligned_cols=29 Identities=28% Similarity=0.198 Sum_probs=19.5
Q ss_pred HHHHHhhccCCCeEEEEEcCCCCcHHHHH
Q 041747 162 DEVWGHIADYRCRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 162 ~~l~~~L~~~~~~vi~I~G~~GiGKTTLa 190 (211)
..++..+.+.--..|--+|..|.|||.-+
T Consensus 70 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 70 QALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 34555555444456677999999999754
No 479
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=50.47 E-value=21 Score=17.26 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 041747 34 SLSEARRELEDLSEDVSRRVEE 55 (211)
Q Consensus 34 ~L~~~l~~l~~~l~~~~~~~~~ 55 (211)
.|+.++..+++....++.+++.
T Consensus 3 rlee~~r~l~~ivq~lq~r~dr 24 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDR 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666555443
No 480
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=50.09 E-value=41 Score=27.03 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=20.1
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHH
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa 190 (211)
...++..+.+..-..|--+|..|.|||.-+
T Consensus 92 ~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 92 AKDVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp THHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 344555555444455667899999999764
No 481
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=50.07 E-value=21 Score=29.92 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=24.3
Q ss_pred HHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 160 MLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 160 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
....+...|.+ .+.++|+|.|.+ ||||-+..+..=
T Consensus 49 r~~~ll~~lg~p~~~~~vI~VtGTN--GKtST~~~l~~i 85 (487)
T 2vos_A 49 RISALMDLLGSPQRSYPSIHIAGTN--GKTSVARMVDAL 85 (487)
T ss_dssp HHHHHHHHTTCGGGSSCEEEEECSS--SHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhcCeEEEEeCCC--CcHHHHHHHHHH
Confidence 45556666643 467899999987 688877777653
No 482
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=49.64 E-value=42 Score=27.47 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccCCCeEEEEEcCCCCcHHHHH------------HHHHhhhhhc--CCCccEEEEeC
Q 041747 159 SMLDEVWGHIADYRCRIIGLYGIGGVGKTTLL------------KKLNNKFLDI--NHHFDLVIWVA 211 (211)
Q Consensus 159 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa------------~~i~~~~~~v--~~~F~~~~wv~ 211 (211)
..+..++..+.+..-..|--+|..|.|||.-+ +.||+.. .- ...+++.++|+
T Consensus 127 ~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i-~~~~~~~~~~~v~vS 192 (403)
T 4etp_A 127 KEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWI-NKLKTKGWDYKVNAE 192 (403)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHH-HHHHTTTEEEEEEEE
T ss_pred HHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHH-HhhhccCceEEEEEE
No 483
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=49.61 E-value=45 Score=20.77 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=40.7
Q ss_pred chhHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHHHHHHHHHhHhhH
Q 041747 27 HLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDVISRKGE 89 (211)
Q Consensus 27 ~~~~~v~~L~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~v~~~~~~~ed~ld~~~ 89 (211)
.-.+.+..|..++..+...+..++..+.+.+-. ..+...+.....++..+..+.+.+.+++.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y-~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFF-SQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGG-GSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888877777766433211 12235677778888887777777766654
No 484
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=49.57 E-value=14 Score=32.65 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 170 DYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+..-..|-|.|-.|.|||.=++.|....
T Consensus 91 ~~~nQsIiisGESGAGKTe~tK~i~~yl 118 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEASKKIMQFL 118 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhHHHHHHHH
Confidence 4566788899999999999999987654
No 485
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=49.57 E-value=7.9 Score=29.60 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=15.7
Q ss_pred EEEcCCCCcHHHHHHHHHhh
Q 041747 177 GLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 177 ~I~G~~GiGKTTLa~~i~~~ 196 (211)
-+++..|.|||..+-.+...
T Consensus 132 ll~~~tGsGKT~~~~~~~~~ 151 (282)
T 1rif_A 132 ILNLPTSAGRSLIQALLARY 151 (282)
T ss_dssp EECCCTTSCHHHHHHHHHHH
T ss_pred EEEcCCCCCcHHHHHHHHHH
Confidence 34899999999998665543
No 486
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=49.48 E-value=8 Score=34.03 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=16.9
Q ss_pred CeEEEEEcCCCCcHHHHHHH
Q 041747 173 CRIIGLYGIGGVGKTTLLKK 192 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~ 192 (211)
-..+-|+|+.|.|||+.+..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHH
Confidence 46788999999999999844
No 487
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=49.41 E-value=8 Score=36.56 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=14.9
Q ss_pred CeEEEEEcCCCCcHHHHH
Q 041747 173 CRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa 190 (211)
-..+-|.|.+|+||||.+
T Consensus 23 ~~~~~v~a~AGSGKT~vl 40 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVL 40 (1232)
T ss_dssp SSCEEEEECTTCCHHHHH
T ss_pred CCCEEEEecCCCcHHHHH
Confidence 456788899999999874
No 488
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=48.90 E-value=18 Score=28.85 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=13.3
Q ss_pred EEEEcCCCCcHHHHHH
Q 041747 176 IGLYGIGGVGKTTLLK 191 (211)
Q Consensus 176 i~I~G~~GiGKTTLa~ 191 (211)
+-+.++.|.|||+.+-
T Consensus 80 ~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 80 VIAQAQSGTGKTATFA 95 (414)
T ss_dssp EEECCCSCSSSHHHHH
T ss_pred EEEECCCCCcccHHHH
Confidence 6778999999998643
No 489
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=48.88 E-value=16 Score=26.45 Aligned_cols=17 Identities=24% Similarity=0.081 Sum_probs=13.1
Q ss_pred EEEEEcCCCCcHHHHHH
Q 041747 175 IIGLYGIGGVGKTTLLK 191 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~ 191 (211)
-+-+.++.|.|||..+.
T Consensus 43 ~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 43 SMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CEEEECCSSHHHHHHHH
T ss_pred CEEEECCCCChHHHHHH
Confidence 35678999999998533
No 490
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=48.24 E-value=15 Score=32.86 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=23.1
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 169 ADYRCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 169 ~~~~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
.+..-..|-|.|-.|.|||.=++.|...
T Consensus 168 ~~~~nQsIiisGESGAGKTe~tK~i~~y 195 (770)
T 1w9i_A 168 DDRQNQSLLITGESGAGKTENTKKVIQY 195 (770)
T ss_dssp HHCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhcCCcEEEEecCCCCcchHHHHHHHHH
Confidence 3456778889999999999999988664
No 491
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=48.05 E-value=27 Score=28.46 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=18.8
Q ss_pred HHHHHhhccCCCeEEEEEcCCCCcHHHHH
Q 041747 162 DEVWGHIADYRCRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 162 ~~l~~~L~~~~~~vi~I~G~~GiGKTTLa 190 (211)
..++..+.+..-..|--+|..|.|||.-+
T Consensus 88 ~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 88 QPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp GGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 33444444443445667999999999755
No 492
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=47.76 E-value=22 Score=31.25 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=26.6
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
-.+++..+.+-...+..|.|..|-||||++..+....
T Consensus 180 Q~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~ 216 (671)
T 2zpa_A 180 QQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI 216 (671)
T ss_dssp HHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH
Confidence 3344444443233577899999999999999998765
No 493
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=47.73 E-value=15 Score=26.79 Aligned_cols=17 Identities=24% Similarity=0.116 Sum_probs=13.2
Q ss_pred eEEEEEcCCCCcHHHHH
Q 041747 174 RIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 174 ~vi~I~G~~GiGKTTLa 190 (211)
+-+-+.++.|.|||..+
T Consensus 58 ~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 34577899999999754
No 494
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=47.61 E-value=29 Score=27.67 Aligned_cols=17 Identities=24% Similarity=0.220 Sum_probs=13.3
Q ss_pred EEEEEcCCCCcHHHHHH
Q 041747 175 IIGLYGIGGVGKTTLLK 191 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa~ 191 (211)
-+-+.++.|.|||..+-
T Consensus 76 ~~lv~a~TGsGKT~~~~ 92 (410)
T 2j0s_A 76 DVIAQSQSGTGKTATFS 92 (410)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred CEEEECCCCCCchHHHH
Confidence 36688999999996544
No 495
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=47.56 E-value=25 Score=25.75 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=12.7
Q ss_pred EEEEEcCCCCcHHHHH
Q 041747 175 IIGLYGIGGVGKTTLL 190 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa 190 (211)
-+-+.++.|.|||..+
T Consensus 63 ~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVF 78 (230)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred CEEEECCCCCcHHHHH
Confidence 3667899999999753
No 496
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=46.89 E-value=21 Score=29.50 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=17.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747 172 RCRIIGLYGIGGVGKTTLLKKLNNK 196 (211)
Q Consensus 172 ~~~vi~I~G~~GiGKTTLa~~i~~~ 196 (211)
+.++|+|.|..| |||-...++.=
T Consensus 111 ~~~~IaVTGTnG--KTTTt~ml~~i 133 (451)
T 3lk7_A 111 ESQLIGITGSNG--KTTTTTMIAEV 133 (451)
T ss_dssp CSEEEEEECSSC--HHHHHHHHHHH
T ss_pred CCCEEEEECCCC--HHHHHHHHHHH
Confidence 358999999875 99988777653
No 497
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=46.68 E-value=40 Score=26.02 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=14.1
Q ss_pred CeEEEEEcCCCCcHHHHH
Q 041747 173 CRIIGLYGIGGVGKTTLL 190 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa 190 (211)
.+-+-+.++.|.|||...
T Consensus 131 ~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 356778899999999653
No 498
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=46.64 E-value=22 Score=26.20 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=12.9
Q ss_pred EEEEEcCCCCcHHHHH
Q 041747 175 IIGLYGIGGVGKTTLL 190 (211)
Q Consensus 175 vi~I~G~~GiGKTTLa 190 (211)
-+-++++.|.|||..+
T Consensus 69 ~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 69 DVIAQAQSGTGKTATF 84 (237)
T ss_dssp CEEECCCSSHHHHHHH
T ss_pred CEEEECCCCCcHHHHH
Confidence 3667899999999763
No 499
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=46.45 E-value=17 Score=32.66 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747 170 DYRCRIIGLYGIGGVGKTTLLKKLNNKF 197 (211)
Q Consensus 170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~~ 197 (211)
+..-..|-|.|-.|.|||+=++.|....
T Consensus 168 ~~~nQsIiiSGESGAGKTe~tK~im~yl 195 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNTKRVIQYF 195 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHHHHHHHhh
Confidence 4567788899999999999999887643
No 500
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=45.09 E-value=9.1 Score=33.62 Aligned_cols=20 Identities=25% Similarity=0.087 Sum_probs=16.4
Q ss_pred CeEEEEEcCCCCcHHHHHHH
Q 041747 173 CRIIGLYGIGGVGKTTLLKK 192 (211)
Q Consensus 173 ~~vi~I~G~~GiGKTTLa~~ 192 (211)
-+.+-|+|+.|.|||+.+..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHH
Confidence 35678899999999998843
Done!