BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041748
         (479 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 9/80 (11%)

Query: 290 VAANLVFHLNTLKIYLKI-SDTLNLVRS--------IKPTIVTLVEQEGSRSPRNFLSRF 340
           +A  + F L+T K+ L+I  ++  LVR+        +  TI+T+V  EG RS  N L   
Sbjct: 14  IADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAG 73

Query: 341 MESLHYFAAMFDSLDDCLPQ 360
           ++    FA++   L D + Q
Sbjct: 74  LQRQMSFASVRIGLYDSVKQ 93


>pdb|1QQS|A Chain A, Neutrophil Gelatinase Associated Lipocalin Homodimer
          Length = 174

 Score = 30.0 bits (66), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 228 KATNGNRISFRITGFGRSIEELQETENRLVSFSKSF 263
           K  + NR  F+IT +GR+ E   E +N  + FSKS 
Sbjct: 121 KKVSQNREYFKITLYGRTKELTSELKNNFIRFSKSL 156


>pdb|3CMP|A Chain A, Crystal Structure Of Siderocalin (Ngal, Lipocalin 2) K125a
           Mutant Complexed With Ferric Enterobactin
 pdb|3CMP|B Chain B, Crystal Structure Of Siderocalin (Ngal, Lipocalin 2) K125a
           Mutant Complexed With Ferric Enterobactin
 pdb|3CMP|C Chain C, Crystal Structure Of Siderocalin (Ngal, Lipocalin 2) K125a
           Mutant Complexed With Ferric Enterobactin
          Length = 198

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 228 KATNGNRISFRITGFGRSIEELQETENRLVSFSKSF 263
           KA + NR  F+IT +GR+ E   E +   + FSKS 
Sbjct: 144 KAVSQNREYFKITLYGRTKELTSELKENFIRFSKSL 179


>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
           Homolog In Complex With Biochanin A And Sah
 pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
           Homolog In Complex With Biochanin A And Sah
          Length = 357

 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 11/61 (18%)

Query: 111 LALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPFYEMITKQPTE-EEEFLAF 169
           + L NL  + Q  S   D+VQR++ + A           + F+E+IT Q  E EEE  A 
Sbjct: 52  ITLSNLVSILQIPSTKVDNVQRLMRYLA----------HNGFFEIITNQELENEEEAYAL 101

Query: 170 T 170
           T
Sbjct: 102 T 102


>pdb|3HWD|A Chain A, Crystal Structure Of Siderocalin (Ngal, Lipocalin 2)
           K125a-K Mutant Complexed With Ferric Enterobactin
 pdb|3HWD|B Chain B, Crystal Structure Of Siderocalin (Ngal, Lipocalin 2)
           K125a-K Mutant Complexed With Ferric Enterobactin
 pdb|3HWD|C Chain C, Crystal Structure Of Siderocalin (Ngal, Lipocalin 2)
           K125a-K Mutant Complexed With Ferric Enterobactin
          Length = 198

 Score = 28.5 bits (62), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 228 KATNGNRISFRITGFGRSIEELQETENRLVSFSKSF 263
           KA + NR  F IT +GR+ E   E +   + FSKS 
Sbjct: 144 KAVSQNREYFAITLYGRTKELTSELKENFIRFSKSL 179


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,696,182
Number of Sequences: 62578
Number of extensions: 487285
Number of successful extensions: 1107
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 9
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)