Query 041748
Match_columns 479
No_of_seqs 157 out of 715
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 10:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 4E-107 9E-112 843.6 37.5 357 93-477 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.4 0.006 1.3E-07 60.2 15.8 192 173-416 33-226 (247)
3 TIGR00740 methyltransferase, p 96.8 0.061 1.3E-06 52.5 16.1 106 204-326 54-160 (239)
4 TIGR02752 MenG_heptapren 2-hep 95.5 1.5 3.2E-05 42.3 18.3 115 188-326 35-150 (231)
5 PF12847 Methyltransf_18: Meth 94.1 0.26 5.6E-06 41.5 7.9 105 206-326 4-110 (112)
6 PLN02233 ubiquinone biosynthes 94.0 2.4 5.2E-05 42.3 15.7 120 204-341 74-195 (261)
7 PRK06202 hypothetical protein; 91.5 3 6.5E-05 40.4 12.2 107 203-326 60-166 (232)
8 TIGR01934 MenG_MenH_UbiE ubiqu 90.8 14 0.00031 34.6 17.9 114 186-325 27-141 (223)
9 PF13489 Methyltransf_23: Meth 89.9 4.9 0.00011 35.6 11.1 92 203-326 22-114 (161)
10 PF13847 Methyltransf_31: Meth 89.0 4.2 9E-05 36.6 10.1 103 203-326 3-109 (152)
11 PLN02336 phosphoethanolamine N 88.5 39 0.00085 36.4 18.9 114 186-326 254-368 (475)
12 TIGR02716 C20_methyl_CrtF C-20 87.3 11 0.00024 38.2 13.0 116 187-329 138-257 (306)
13 TIGR03438 probable methyltrans 85.8 9.6 0.00021 38.9 11.7 111 204-328 64-178 (301)
14 PF09243 Rsm22: Mitochondrial 85.5 4.6 9.9E-05 40.8 9.1 144 181-344 12-156 (274)
15 PF13649 Methyltransf_25: Meth 85.1 1.7 3.6E-05 36.4 4.8 97 207-319 1-99 (101)
16 TIGR03439 methyl_EasF probable 84.8 10 0.00023 39.4 11.4 140 204-353 77-234 (319)
17 PF01209 Ubie_methyltran: ubiE 83.4 15 0.00032 36.3 11.5 171 203-419 47-219 (233)
18 TIGR00477 tehB tellurite resis 82.2 21 0.00046 33.8 11.7 111 185-322 17-128 (195)
19 PLN02336 phosphoethanolamine N 82.2 16 0.00035 39.4 12.1 114 188-326 27-141 (475)
20 COG2226 UbiE Methylase involve 81.6 61 0.0013 32.5 15.0 191 175-417 27-221 (238)
21 PRK00216 ubiE ubiquinone/menaq 80.6 53 0.0011 31.1 14.6 104 204-325 52-156 (239)
22 PLN02396 hexaprenyldihydroxybe 80.3 27 0.0006 36.3 12.6 101 204-326 132-234 (322)
23 PF03291 Pox_MCEL: mRNA cappin 79.7 14 0.00031 38.5 10.3 113 203-325 62-184 (331)
24 smart00138 MeTrc Methyltransfe 78.9 9.3 0.0002 38.3 8.4 53 203-255 99-151 (264)
25 PRK14103 trans-aconitate 2-met 76.8 19 0.00041 35.5 9.8 105 189-327 20-126 (255)
26 PRK11036 putative S-adenosyl-L 76.7 20 0.00044 35.3 10.0 110 189-325 36-147 (255)
27 TIGR03587 Pse_Me-ase pseudamin 76.5 21 0.00047 34.3 9.8 99 205-329 45-145 (204)
28 PRK11207 tellurite resistance 73.8 33 0.00071 32.6 10.3 113 185-325 17-132 (197)
29 PRK12335 tellurite resistance 71.7 36 0.00078 34.3 10.5 110 187-323 109-219 (287)
30 PLN02585 magnesium protoporphy 71.6 80 0.0017 32.8 13.2 104 204-326 145-249 (315)
31 PRK09489 rsmC 16S ribosomal RN 71.3 39 0.00084 35.4 10.9 116 186-326 184-302 (342)
32 PTZ00098 phosphoethanolamine N 69.9 97 0.0021 30.9 13.0 115 184-326 38-155 (263)
33 PF08242 Methyltransf_12: Meth 69.6 4.8 0.0001 33.3 3.1 95 208-321 1-97 (99)
34 PRK05785 hypothetical protein; 69.4 86 0.0019 30.5 12.3 94 204-327 52-146 (226)
35 TIGR02021 BchM-ChlM magnesium 66.5 54 0.0012 31.3 10.1 120 181-325 36-156 (219)
36 PF07521 RMMBL: RNA-metabolisi 66.5 8.8 0.00019 27.9 3.5 38 288-325 1-38 (43)
37 PF08241 Methyltransf_11: Meth 66.0 30 0.00065 27.3 7.0 93 208-324 1-94 (95)
38 COG4301 Uncharacterized conser 64.8 66 0.0014 32.9 10.4 133 184-328 59-194 (321)
39 PRK15001 SAM-dependent 23S rib 64.7 43 0.00094 35.7 9.8 109 206-327 231-340 (378)
40 PRK01683 trans-aconitate 2-met 64.1 66 0.0014 31.4 10.4 110 186-327 19-130 (258)
41 PLN02244 tocopherol O-methyltr 62.2 54 0.0012 34.0 9.8 100 204-325 119-221 (340)
42 PRK00121 trmB tRNA (guanine-N( 61.4 58 0.0013 31.1 9.2 107 204-325 41-154 (202)
43 PRK10909 rsmD 16S rRNA m(2)G96 59.6 1.3E+02 0.0029 28.9 11.4 105 205-332 55-164 (199)
44 TIGR02469 CbiT precorrin-6Y C5 59.1 23 0.00049 29.8 5.4 46 205-259 21-66 (124)
45 PF13679 Methyltransf_32: Meth 58.7 23 0.0005 31.8 5.6 51 202-257 24-74 (141)
46 PRK00107 gidB 16S rRNA methylt 58.6 1.3E+02 0.0029 28.6 11.1 95 205-326 47-144 (187)
47 PRK11873 arsM arsenite S-adeno 57.3 84 0.0018 31.0 9.9 100 204-325 78-181 (272)
48 PRK06922 hypothetical protein; 55.2 80 0.0017 36.3 10.2 103 205-325 420-535 (677)
49 TIGR02072 BioC biotin biosynth 54.8 71 0.0015 30.1 8.6 113 186-326 19-134 (240)
50 PRK07580 Mg-protoporphyrin IX 52.9 1.8E+02 0.0038 27.6 11.0 101 203-325 63-163 (230)
51 smart00828 PKS_MT Methyltransf 52.7 75 0.0016 30.2 8.4 100 206-325 2-102 (224)
52 TIGR00537 hemK_rel_arch HemK-r 52.1 1.9E+02 0.0042 26.5 12.3 41 206-257 22-62 (179)
53 PF00891 Methyltransf_2: O-met 52.1 1.2E+02 0.0027 29.2 10.0 100 204-331 101-204 (241)
54 PRK08317 hypothetical protein; 51.0 2.1E+02 0.0046 26.7 13.8 104 203-326 19-123 (241)
55 PRK04457 spermidine synthase; 50.6 1.8E+02 0.0038 29.2 11.0 107 205-326 68-176 (262)
56 PRK00274 ksgA 16S ribosomal RN 50.0 54 0.0012 32.9 7.2 72 173-256 12-84 (272)
57 TIGR02081 metW methionine bios 48.0 1.2E+02 0.0026 28.4 8.9 38 205-252 15-52 (194)
58 COG4106 Tam Trans-aconitate me 47.9 22 0.00047 35.6 3.8 106 203-333 30-135 (257)
59 PRK15068 tRNA mo(5)U34 methylt 47.8 1.2E+02 0.0027 31.3 9.6 100 205-326 124-225 (322)
60 PRK00811 spermidine synthase; 47.1 2.2E+02 0.0048 28.8 11.1 109 205-326 78-190 (283)
61 COG2227 UbiG 2-polyprenyl-3-me 46.8 57 0.0012 32.8 6.6 99 204-325 60-159 (243)
62 PLN02490 MPBQ/MSBQ methyltrans 44.3 1.2E+02 0.0026 31.9 8.9 98 203-325 113-213 (340)
63 smart00650 rADc Ribosomal RNA 43.0 1.8E+02 0.0038 26.7 9.0 100 205-328 15-114 (169)
64 PRK13944 protein-L-isoaspartat 40.7 2.2E+02 0.0048 27.1 9.5 96 204-325 73-171 (205)
65 TIGR00452 methyltransferase, p 40.5 2.1E+02 0.0046 29.7 10.0 100 205-326 123-224 (314)
66 TIGR00417 speE spermidine synt 38.3 3.4E+02 0.0074 27.0 10.9 109 206-326 75-185 (270)
67 PF05175 MTS: Methyltransferas 37.7 97 0.0021 28.6 6.4 118 185-325 18-138 (170)
68 COG1500 Predicted exosome subu 37.7 98 0.0021 30.9 6.6 85 349-441 75-161 (234)
69 PRK04148 hypothetical protein; 36.5 1.9E+02 0.0042 26.4 7.9 34 204-247 17-50 (134)
70 PRK11088 rrmA 23S rRNA methylt 36.0 1.2E+02 0.0026 30.2 7.2 45 204-254 86-130 (272)
71 PRK11705 cyclopropane fatty ac 35.0 3E+02 0.0065 29.2 10.3 98 204-326 168-266 (383)
72 PRK00517 prmA ribosomal protei 34.9 1E+02 0.0023 30.3 6.5 63 182-257 101-163 (250)
73 COG1341 Predicted GTPase or GT 34.1 4.5E+02 0.0097 28.5 11.2 39 288-329 173-211 (398)
74 PLN02232 ubiquinone biosynthes 33.3 3.8E+02 0.0082 24.4 12.2 79 240-326 1-81 (160)
75 COG2242 CobL Precorrin-6B meth 32.3 95 0.0021 30.1 5.4 45 204-260 35-82 (187)
76 TIGR00138 gidB 16S rRNA methyl 31.7 74 0.0016 30.0 4.6 97 204-326 43-141 (181)
77 TIGR00044 pyridoxal phosphate 31.7 1.1E+02 0.0024 29.9 6.0 86 176-264 92-189 (229)
78 PLN02366 spermidine synthase 30.4 5.4E+02 0.012 26.6 11.0 109 205-325 93-204 (308)
79 KOG2904 Predicted methyltransf 30.4 1E+02 0.0022 32.1 5.4 59 189-258 136-194 (328)
80 TIGR03534 RF_mod_PrmC protein- 30.1 1E+02 0.0023 29.5 5.5 45 204-257 88-132 (251)
81 PF05401 NodS: Nodulation prot 30.0 4.8E+02 0.01 25.6 9.8 111 189-327 33-146 (201)
82 PRK03522 rumB 23S rRNA methylu 29.5 4.1E+02 0.0089 27.1 10.0 98 204-326 174-273 (315)
83 PF03848 TehB: Tellurite resis 28.4 5.5E+02 0.012 24.8 10.5 112 188-326 20-132 (192)
84 PRK08287 cobalt-precorrin-6Y C 27.9 1.2E+02 0.0025 28.3 5.2 45 205-258 33-77 (187)
85 PF02353 CMAS: Mycolic acid cy 27.7 3.1E+02 0.0068 27.7 8.6 102 204-326 63-165 (273)
86 PRK13168 rumA 23S rRNA m(5)U19 27.2 4.7E+02 0.01 28.1 10.4 98 204-327 298-400 (443)
87 PRK10258 biotin biosynthesis p 27.1 5.8E+02 0.013 24.7 10.4 106 186-325 30-138 (251)
88 TIGR01716 RGG_Cterm transcript 26.4 1.4E+02 0.0029 28.4 5.5 56 92-147 126-182 (220)
89 PLN03075 nicotianamine synthas 26.3 5.5E+02 0.012 26.6 10.1 107 206-327 126-233 (296)
90 COG2230 Cfa Cyclopropane fatty 25.8 1.5E+02 0.0033 30.5 5.9 102 203-325 72-174 (283)
91 PRK07402 precorrin-6B methylas 25.8 2.7E+02 0.0058 26.0 7.3 65 181-259 23-87 (196)
92 COG2813 RsmC 16S RNA G1207 met 24.7 1.3E+02 0.0029 31.2 5.2 58 186-257 146-203 (300)
93 PRK01581 speE spermidine synth 24.4 4.3E+02 0.0094 28.4 9.1 108 205-325 152-266 (374)
94 TIGR00091 tRNA (guanine-N(7)-) 24.2 1E+02 0.0023 29.0 4.2 109 204-327 17-132 (194)
95 PHA03411 putative methyltransf 24.0 1.5E+02 0.0032 30.5 5.4 74 168-254 33-106 (279)
96 TIGR00406 prmA ribosomal prote 23.6 2.6E+02 0.0057 28.2 7.2 123 175-325 132-257 (288)
97 TIGR02085 meth_trns_rumB 23S r 23.0 6.3E+02 0.014 26.6 10.2 98 205-327 235-334 (374)
98 PRK14896 ksgA 16S ribosomal RN 22.5 1.8E+02 0.0039 28.8 5.7 62 184-257 11-72 (258)
99 TIGR00755 ksgA dimethyladenosi 22.3 1.8E+02 0.0039 28.6 5.6 61 184-256 11-71 (253)
100 TIGR03180 UraD_2 OHCU decarbox 22.3 2.1E+02 0.0045 26.8 5.7 90 166-271 10-114 (158)
101 PRK03612 spermidine synthase; 21.6 6.6E+02 0.014 27.8 10.4 110 205-327 299-415 (521)
102 COG2890 HemK Methylase of poly 21.4 1.1E+02 0.0025 31.0 4.1 44 206-258 113-156 (280)
103 PLN02446 (5-phosphoribosyl)-5- 21.4 1.2E+02 0.0026 30.8 4.2 25 202-227 57-81 (262)
104 PRK00377 cbiT cobalt-precorrin 20.7 1.9E+02 0.0042 27.2 5.3 48 203-258 40-87 (198)
105 PF11455 DUF3018: Protein of 20.2 65 0.0014 26.0 1.6 21 399-419 3-23 (65)
106 PF04716 ETC_C1_NDUFA5: ETC co 20.1 2E+02 0.0044 22.4 4.3 39 344-385 8-46 (57)
107 COG2263 Predicted RNA methylas 20.1 8.4E+02 0.018 23.9 10.0 114 204-344 46-159 (198)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=4.2e-107 Score=843.59 Aligned_cols=357 Identities=41% Similarity=0.701 Sum_probs=330.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhhHHHHHHHHHHHhhccCCCcccccccCCCC----cHHHHHH
Q 041748 93 LIHLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPFYEMITKQPT----EEEEFLA 168 (479)
Q Consensus 93 L~~LLl~CA~AV~~gd~~~A~~~L~~L~~~aS~~Gd~~qRlA~yFaeAL~~Rl~~~~~~~~~~~~~~~~----~~~~~~A 168 (479)
|+|||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+||.+.+++.|..+...+. ..+.+.|
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999988887766543322 3566899
Q ss_pred HHHHHhcCCCccchhhhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecC----
Q 041748 169 FTDLYRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGR---- 244 (479)
Q Consensus 169 ~~~f~e~sP~~kfah~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~---- 244 (479)
|+.||++|||+||||||||||||||++|+ ++||||||||++|+|||+|||+||.| ++|||+||||||++
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~-----~~vHIID~~i~~G~QW~~LiqaLa~R--~~gpp~LrIT~i~~~~~~ 153 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGE-----RRVHIIDFGIGFGVQWPSLIQALASR--PGGPPSLRITGIGPPNSG 153 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccC-----cceEEEeccCCcchHHHHHHHHHhcC--CCCCCeEEEEeccCCCCC
Confidence 99999999999999999999999999996 79999999999999999999999999 58999999999998
Q ss_pred ChHHHHHHHHHHHHHHhhcCCeeEEEEEeecc-c---eeccccCCCCcEEEEeeccccccccchh-----hhHHHHHHhH
Q 041748 245 SIEELQETENRLVSFSKSFRNLVFEFQGLIRG-S---RLVNIRKKKHETVAANLVFHLNTLKIYL-----KISDTLNLVR 315 (479)
Q Consensus 245 ~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~-~---~l~~L~~~~~EaLaVN~~~~Lh~L~~~~-----~~~~~L~~Ir 315 (479)
+.+.+++||+||.+||+++| |||||++|... + +..+|++++||+|||||+|+||||.+++ +++.||+.||
T Consensus 154 ~~~~l~~~g~rL~~fA~~lg-v~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir 232 (374)
T PF03514_consen 154 SADELQETGRRLAEFARSLG-VPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR 232 (374)
T ss_pred cHHHHHHHHHHHHHHHHHcC-ccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH
Confidence 78899999999999999998 99999996543 3 2345889999999999999999998643 4678999999
Q ss_pred ccCCcEEEEEeecCCCCCCchhHHHHHHHHHHHHHhhhhhhcCCCCChHHHHHHHHHHhHHHHhhhhcCCCCCCCCCCcc
Q 041748 316 SIKPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEIKSMLNCDESDNGNYDNYY 395 (479)
Q Consensus 316 ~L~P~VvtlvE~ea~~ns~~F~~RF~eaL~yYsalFDSLda~lp~~s~eR~~iEr~~lg~eI~niVa~eg~~~g~~~~R~ 395 (479)
+|+|+|||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+.+||++|+|||||||. +|+
T Consensus 233 ~L~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~------~R~ 306 (374)
T PF03514_consen 233 SLNPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGE------ERV 306 (374)
T ss_pred hcCCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccc------ccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 799
Q ss_pred ccccchhHHHHHHHcCCCccccCChHHHHHHHHHHHHhccCCCcccccccCCCCeEEEEeCCCeeEEeeeCCceEEEEee
Q 041748 396 PRYERMETWKARMESHEFGGIKMSSKSLIQAKLLLKIRTHYCPLQFDEENNNNGFKVFERYDGKAISLGWQDRCLLTATA 475 (479)
Q Consensus 396 ERhE~~~~W~~rm~~AGF~~v~ls~~~~~qak~lL~~~~~~~~~~~~~~~~~~Gf~v~~~d~g~~L~LgWk~~pL~~~Sa 475 (479)
||||++++|+.||++|||+++|+|++++.|||+||+.| .++||+|.+ ++|| |.||||++||+++||
T Consensus 307 eR~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~------------~~~g~~v~~-~~~~-l~L~Wk~~pL~~~Sa 372 (374)
T PF03514_consen 307 ERHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKF------------PGDGYTVEE-DGGC-LLLGWKGRPLVAASA 372 (374)
T ss_pred ccccchhHHHHHHHhcCCeecCCCHHHHHHHHHHHhcc------------CCCCeEEEE-cCCE-EEEEeCCcEEEEEeC
Confidence 99999999999999999999999999999999999976 357899886 4554 569999999999999
Q ss_pred ee
Q 041748 476 WH 477 (479)
Q Consensus 476 W~ 477 (479)
||
T Consensus 373 Wr 374 (374)
T PF03514_consen 373 WR 374 (374)
T ss_pred cC
Confidence 97
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.41 E-value=0.006 Score=60.25 Aligned_cols=192 Identities=16% Similarity=0.171 Sum_probs=104.4
Q ss_pred HhcCCCccchhhhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHH
Q 041748 173 YRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQET 252 (479)
Q Consensus 173 ~e~sP~~kfah~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~et 252 (479)
....|.+...|-.++.. +...-. ..-+|+|+|.|.|. +...|+.+ -..|..++|||+.+...++.+
T Consensus 33 ~~~~p~y~~~~~~~~~~-~~~~~~------~~~~vLDlGcGtG~----~~~~l~~~---~~~~~~~v~gvD~S~~ml~~A 98 (247)
T PRK15451 33 QRSVPGYSNIISMIGML-AERFVQ------PGTQVYDLGCSLGA----ATLSVRRN---IHHDNCKIIAIDNSPAMIERC 98 (247)
T ss_pred HhcCCChHHHHHHHHHH-HHHhCC------CCCEEEEEcccCCH----HHHHHHHh---cCCCCCeEEEEeCCHHHHHHH
Confidence 35578877777666543 333322 24689999999995 33334443 112457999999999988888
Q ss_pred HHHHHHHHhhcCCeeEEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCc-EEEEEeecCC
Q 041748 253 ENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPT-IVTLVEQEGS 330 (479)
Q Consensus 253 g~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~-VvtlvE~ea~ 330 (479)
.+++..+... -..+|. ..+. ..+.....++++.| +.||++.+. ....+|+.| +.|+|. +++++|.-..
T Consensus 99 ~~~~~~~~~~---~~v~~~--~~d~--~~~~~~~~D~vv~~--~~l~~l~~~-~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 99 RRHIDAYKAP---TPVDVI--EGDI--RDIAIENASMVVLN--FTLQFLEPS-ERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred HHHHHhcCCC---CCeEEE--eCCh--hhCCCCCCCEEehh--hHHHhCCHH-HHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 8877654221 134443 2222 12222334455544 457888653 345666655 678997 4456664332
Q ss_pred CCCCchhHHHHHHHHHHHHHhhhhhhcCCCCChHHHHHHHHHHhHHHHhhhhcCCCCCCCCCCccccccchhHHHHHHHc
Q 041748 331 RSPRNFLSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEIKSMLNCDESDNGNYDNYYPRYERMETWKARMES 410 (479)
Q Consensus 331 ~ns~~F~~RF~eaL~yYsalFDSLda~lp~~s~eR~~iEr~~lg~eI~niVa~eg~~~g~~~~R~ERhE~~~~W~~rm~~ 410 (479)
. .+...+.+.+..+.|. .....+ ...+++. .....| +-++.+.++...+|+.
T Consensus 169 ~-~~~~~~~~~~~~~~~~-----~~~g~s-----~~ei~~~--~~~~~~---------------~~~~~~~~~~~~~L~~ 220 (247)
T PRK15451 169 E-DAKVGELLFNMHHDFK-----RANGYS-----ELEISQK--RSMLEN---------------VMLTDSVETHKARLHK 220 (247)
T ss_pred C-cchhHHHHHHHHHHHH-----HHcCCC-----HHHHHHH--HHHHHh---------------hcccCCHHHHHHHHHH
Confidence 2 2333333333322221 111121 1222221 111222 2334788899999999
Q ss_pred CCCccc
Q 041748 411 HEFGGI 416 (479)
Q Consensus 411 AGF~~v 416 (479)
|||..+
T Consensus 221 aGF~~v 226 (247)
T PRK15451 221 AGFEHS 226 (247)
T ss_pred cCchhH
Confidence 999764
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.79 E-value=0.061 Score=52.51 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=64.9
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceecccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIR 283 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~ 283 (479)
.-+|+|+|.|.|. ++..|+.+ ...|..++|||+.+...++.+.+++.++... .+.+|. ..+. ..+.
T Consensus 54 ~~~iLDlGcG~G~----~~~~l~~~---~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~---~~v~~~--~~d~--~~~~ 119 (239)
T TIGR00740 54 DSNVYDLGCSRGA----ATLSARRN---INQPNVKIIGIDNSQPMVERCRQHIAAYHSE---IPVEIL--CNDI--RHVE 119 (239)
T ss_pred CCEEEEecCCCCH----HHHHHHHh---cCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC---CCeEEE--ECCh--hhCC
Confidence 4589999999993 55556655 1234689999999988888888777654221 233442 2222 1122
Q ss_pred CCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 284 KKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 284 ~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
..+..+++ +.+.|||+.+. ....+|+.+ +.|+|.-.+++-
T Consensus 120 ~~~~d~v~--~~~~l~~~~~~-~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 120 IKNASMVI--LNFTLQFLPPE-DRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred CCCCCEEe--eecchhhCCHH-HHHHHHHHHHHhcCCCeEEEEe
Confidence 22334444 44457888654 344566555 678998776654
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.54 E-value=1.5 Score=42.26 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=62.7
Q ss_pred HHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCee
Q 041748 188 QAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLV 267 (479)
Q Consensus 188 qAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvp 267 (479)
+.++..+.-. +.-+|+|+|.|.|. +...|+.+ .+|..++|||+.+...++.+.+++.+.. +.+
T Consensus 35 ~~~l~~l~~~-----~~~~vLDiGcG~G~----~~~~la~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~-- 97 (231)
T TIGR02752 35 KDTMKRMNVQ-----AGTSALDVCCGTAD----WSIALAEA----VGPEGHVIGLDFSENMLSVGRQKVKDAG--LHN-- 97 (231)
T ss_pred HHHHHhcCCC-----CCCEEEEeCCCcCH----HHHHHHHH----hCCCCEEEEEECCHHHHHHHHHHHHhcC--CCc--
Confidence 4455555321 24589999999995 33455554 1235689999998887777776654321 221
Q ss_pred EEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHH-HhHccCCcEEEEEe
Q 041748 268 FEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLN-LVRSIKPTIVTLVE 326 (479)
Q Consensus 268 FeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~-~Ir~L~P~VvtlvE 326 (479)
.+| +..+.....+....=+.|+.+ +.+|++.+. ..+|. ..+.|+|.-.+++-
T Consensus 98 v~~--~~~d~~~~~~~~~~fD~V~~~--~~l~~~~~~---~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 98 VEL--VHGNAMELPFDDNSFDYVTIG--FGLRNVPDY---MQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred eEE--EEechhcCCCCCCCccEEEEe--cccccCCCH---HHHHHHHHHHcCcCeEEEEE
Confidence 222 222221111211122445444 456777543 34555 44778998655543
No 5
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.15 E-value=0.26 Score=41.53 Aligned_cols=105 Identities=21% Similarity=0.169 Sum_probs=65.2
Q ss_pred EEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccccC-
Q 041748 206 HVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRK- 284 (479)
Q Consensus 206 HIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~- 284 (479)
+|+|+|.|.|. +...|+.+. |..++|||+.+.+.++.+.++..+....-+ |.|.-..+ ......
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~-----~~~~~~~ 68 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARLF-----PGARVVGVDISPEMLEIARERAAEEGLSDR-ITFVQGDA-----EFDPDFL 68 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHHH-----TTSEEEEEESSHHHHHHHHHHHHHTTTTTT-EEEEESCC-----HGGTTTS
T ss_pred EEEEEcCcCCH----HHHHHHhcC-----CCCEEEEEeCCHHHHHHHHHHHHhcCCCCC-eEEEECcc-----ccCcccC
Confidence 67999999993 344455531 246799999999999999988855444432 55433222 011111
Q ss_pred CCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 285 KKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 285 ~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
.+=++++.+. +.+|++.+......+|+.+ +.|+|.-.++++
T Consensus 69 ~~~D~v~~~~-~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 69 EPFDLVICSG-FTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SCEEEEEECS-GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEECC-CccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1224565555 5566665444556777766 579998887765
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=93.96 E-value=2.4 Score=42.32 Aligned_cols=120 Identities=19% Similarity=0.167 Sum_probs=68.4
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceecccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIR 283 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~ 283 (479)
.-+|+|+|.|.|. +...|+.+. +|.-+||||+.+.+.++.+.++....+.... -..+|. ..+ ...+.
T Consensus 74 ~~~VLDlGcGtG~----~~~~la~~~----~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~-~~i~~~--~~d--~~~lp 140 (261)
T PLN02233 74 GDRVLDLCCGSGD----LAFLLSEKV----GSDGKVMGLDFSSEQLAVAASRQELKAKSCY-KNIEWI--EGD--ATDLP 140 (261)
T ss_pred CCEEEEECCcCCH----HHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHhhhhhhccC-CCeEEE--Ecc--cccCC
Confidence 4689999999996 344566651 2345899999999988888776543232221 223332 222 22233
Q ss_pred CCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEE-EEEeecCCCCCCchhHHHH
Q 041748 284 KKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIV-TLVEQEGSRSPRNFLSRFM 341 (479)
Q Consensus 284 ~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~Vv-tlvE~ea~~ns~~F~~RF~ 341 (479)
..++..=+|-+.+.||++.+. ..+|+.+ |-|+|.-. +++|- ......|...+.
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d~---~~~l~ei~rvLkpGG~l~i~d~--~~~~~~~~~~~~ 195 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVDR---LKAMQEMYRVLKPGSRVSILDF--NKSTQPFTTSMQ 195 (261)
T ss_pred CCCCCEeEEEEecccccCCCH---HHHHHHHHHHcCcCcEEEEEEC--CCCCcHHHHHHH
Confidence 444434344456668888642 3455544 67999754 34443 223334555443
No 7
>PRK06202 hypothetical protein; Provisional
Probab=91.55 E-value=3 Score=40.44 Aligned_cols=107 Identities=11% Similarity=0.079 Sum_probs=58.3
Q ss_pred ceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccc
Q 041748 203 RALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNI 282 (479)
Q Consensus 203 ~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L 282 (479)
+...|+|+|.|.|. +.. .|+... +...|..+||||+.+.+.++.+.++.. .-+ +.|.... ... +
T Consensus 60 ~~~~iLDlGcG~G~-~~~---~L~~~~-~~~g~~~~v~gvD~s~~~l~~a~~~~~----~~~-~~~~~~~--~~~----l 123 (232)
T PRK06202 60 RPLTLLDIGCGGGD-LAI---DLARWA-RRDGLRLEVTAIDPDPRAVAFARANPR----RPG-VTFRQAV--SDE----L 123 (232)
T ss_pred CCcEEEEeccCCCH-HHH---HHHHHH-HhCCCCcEEEEEcCCHHHHHHHHhccc----cCC-CeEEEEe--ccc----c
Confidence 45789999999995 333 344321 011235799999998887776655431 223 5554321 111 1
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHHHhHccCCcEEEEEe
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVE 326 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~VvtlvE 326 (479)
...++..=+|-|.+.|||+.+. ....+|+.+.++.-..+++.+
T Consensus 124 ~~~~~~fD~V~~~~~lhh~~d~-~~~~~l~~~~r~~~~~~~i~d 166 (232)
T PRK06202 124 VAEGERFDVVTSNHFLHHLDDA-EVVRLLADSAALARRLVLHND 166 (232)
T ss_pred cccCCCccEEEECCeeecCChH-HHHHHHHHHHHhcCeeEEEec
Confidence 1122323233334458999764 345677777554434554443
No 8
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=90.85 E-value=14 Score=34.63 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCC
Q 041748 186 ANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRN 265 (479)
Q Consensus 186 ANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgn 265 (479)
.-+.+++.+.-. +...|+|+|.|.|. +...++.+ .|+..++|+++.+...++.+.+++. .+
T Consensus 27 ~~~~~~~~~~~~-----~~~~vldiG~G~G~----~~~~~~~~----~~~~~~~~~iD~~~~~~~~~~~~~~-----~~- 87 (223)
T TIGR01934 27 WRRRAVKLIGVF-----KGQKVLDVACGTGD----LAIELAKS----APDRGKVTGVDFSSEMLEVAKKKSE-----LP- 87 (223)
T ss_pred HHHHHHHHhccC-----CCCeEEEeCCCCCh----hHHHHHHh----cCCCceEEEEECCHHHHHHHHHHhc-----cC-
Confidence 334555555432 46799999999984 34455554 2334789999988877777766554 22
Q ss_pred eeEEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEE
Q 041748 266 LVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLV 325 (479)
Q Consensus 266 vpFeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~Vvtlv 325 (479)
-...|.. .+. ..+...++..=+|-+.+.+|++.+ ...+|..+ +.|+|.-.+++
T Consensus 88 ~~i~~~~--~d~--~~~~~~~~~~D~i~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 88 LNIEFIQ--ADA--EALPFEDNSFDAVTIAFGLRNVTD---IQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred CCceEEe--cch--hcCCCCCCcEEEEEEeeeeCCccc---HHHHHHHHHHHcCCCcEEEE
Confidence 2233332 111 111122222333334455777754 23455443 56788765543
No 9
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=89.87 E-value=4.9 Score=35.60 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=53.8
Q ss_pred ceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccc
Q 041748 203 RALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNI 282 (479)
Q Consensus 203 ~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L 282 (479)
+.-.|+|+|.|.| . +.+.|+.+ +. ++||++.+...++. . ++.+.-..... .
T Consensus 22 ~~~~vLDiGcG~G-~---~~~~l~~~----~~---~~~g~D~~~~~~~~-----------~-~~~~~~~~~~~------~ 72 (161)
T PF13489_consen 22 PGKRVLDIGCGTG-S---FLRALAKR----GF---EVTGVDISPQMIEK-----------R-NVVFDNFDAQD------P 72 (161)
T ss_dssp TTSEEEEESSTTS-H---HHHHHHHT----TS---EEEEEESSHHHHHH-----------T-TSEEEEEECHT------H
T ss_pred CCCEEEEEcCCCC-H---HHHHHHHh----CC---EEEEEECCHHHHhh-----------h-hhhhhhhhhhh------h
Confidence 5679999999999 3 45556554 22 99999998776655 2 23333221111 1
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
...++-.=+|-|...|||+.+ ...+|+.| +.|+|.-++++.
T Consensus 73 ~~~~~~fD~i~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHLPD---PEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp HCHSSSEEEEEEESSGGGSSH---HHHHHHHHHHCEEEEEEEEEE
T ss_pred hccccchhhHhhHHHHhhccc---HHHHHHHHHHhcCCCCEEEEE
Confidence 112222333333456899985 34666666 568886555544
No 10
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=89.02 E-value=4.2 Score=36.62 Aligned_cols=103 Identities=20% Similarity=0.276 Sum_probs=59.7
Q ss_pred ceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCee-EEEEEeeccc-eec
Q 041748 203 RALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLV-FEFQGLIRGS-RLV 280 (479)
Q Consensus 203 ~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvp-FeF~~v~~~~-~l~ 280 (479)
+..+|+|+|.|.|. +...|+.+- .|..+||||+.+.+.++.+.. .++..+ ++ .+|.. .+. ++.
T Consensus 3 ~~~~iLDlGcG~G~----~~~~l~~~~----~~~~~i~gvD~s~~~i~~a~~----~~~~~~-~~ni~~~~--~d~~~l~ 67 (152)
T PF13847_consen 3 SNKKILDLGCGTGR----LLIQLAKEL----NPGAKIIGVDISEEMIEYAKK----RAKELG-LDNIEFIQ--GDIEDLP 67 (152)
T ss_dssp TTSEEEEET-TTSH----HHHHHHHHS----TTTSEEEEEESSHHHHHHHHH----HHHHTT-STTEEEEE--SBTTCGC
T ss_pred CCCEEEEecCcCcH----HHHHHHHhc----CCCCEEEEEECcHHHHHHhhc----cccccc-ccccceEE--eehhccc
Confidence 56899999999994 344455331 124569999998887766665 445555 55 55543 222 222
Q ss_pred cccC-CCCcEEEEeeccccccccchhhhHHHHH-HhHccCCcEEEEEe
Q 041748 281 NIRK-KKHETVAANLVFHLNTLKIYLKISDTLN-LVRSIKPTIVTLVE 326 (479)
Q Consensus 281 ~L~~-~~~EaLaVN~~~~Lh~L~~~~~~~~~L~-~Ir~L~P~VvtlvE 326 (479)
.. + ..=+.++.+.. +|++.+. ..+|. ..+.|+|..++++.
T Consensus 68 ~~-~~~~~D~I~~~~~--l~~~~~~---~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 68 QE-LEEKFDIIISNGV--LHHFPDP---EKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp GC-SSTTEEEEEEEST--GGGTSHH---HHHHHHHHHHEEEEEEEEEE
T ss_pred cc-cCCCeeEEEEcCc--hhhccCH---HHHHHHHHHHcCCCcEEEEE
Confidence 11 3 22234444444 5777653 24444 46789988776654
No 11
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=88.53 E-value=39 Score=36.39 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=65.4
Q ss_pred hHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCC
Q 041748 186 ANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRN 265 (479)
Q Consensus 186 ANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgn 265 (479)
....+++.+.- .+.-+|+|+|.|.|. +...|+.+ . ..++|||+.+.+.++.+.++. ...+
T Consensus 254 ~te~l~~~~~~-----~~~~~vLDiGcG~G~----~~~~la~~--~----~~~v~gvDiS~~~l~~A~~~~----~~~~- 313 (475)
T PLN02336 254 TTKEFVDKLDL-----KPGQKVLDVGCGIGG----GDFYMAEN--F----DVHVVGIDLSVNMISFALERA----IGRK- 313 (475)
T ss_pred HHHHHHHhcCC-----CCCCEEEEEeccCCH----HHHHHHHh--c----CCEEEEEECCHHHHHHHHHHh----hcCC-
Confidence 33455565532 134689999999994 34557765 2 248999999887777665543 2333
Q ss_pred eeEEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 266 LVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 266 vpFeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
...+|... +. ..+...++..=+|-|...++|+.+. ..+|+.+ +.|+|.-.+++.
T Consensus 314 ~~v~~~~~--d~--~~~~~~~~~fD~I~s~~~l~h~~d~---~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 314 CSVEFEVA--DC--TKKTYPDNSFDVIYSRDTILHIQDK---PALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred CceEEEEc--Cc--ccCCCCCCCEEEEEECCcccccCCH---HHHHHHHHHHcCCCeEEEEE
Confidence 34555322 11 1122222323334444557888653 3455444 679999887665
No 12
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=87.26 E-value=11 Score=38.16 Aligned_cols=116 Identities=8% Similarity=-0.028 Sum_probs=64.8
Q ss_pred HHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCe
Q 041748 187 NQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNL 266 (479)
Q Consensus 187 NqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnv 266 (479)
.+.|++.+.-. +.-+|+|+|-|.| .+...++.+. |.+++|+++.+ ..++.+.+++ +..| +
T Consensus 138 ~~~l~~~~~~~-----~~~~vlDiG~G~G----~~~~~~~~~~-----p~~~~~~~D~~-~~~~~a~~~~----~~~g-l 197 (306)
T TIGR02716 138 IQLLLEEAKLD-----GVKKMIDVGGGIG----DISAAMLKHF-----PELDSTILNLP-GAIDLVNENA----AEKG-V 197 (306)
T ss_pred HHHHHHHcCCC-----CCCEEEEeCCchh----HHHHHHHHHC-----CCCEEEEEecH-HHHHHHHHHH----HhCC-c
Confidence 45677766432 3569999999999 3556666661 46899999863 4555554443 3333 3
Q ss_pred e--EEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCc-EEEEEeecC
Q 041748 267 V--FEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPT-IVTLVEQEG 329 (479)
Q Consensus 267 p--FeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~-VvtlvE~ea 329 (479)
. .+|. ..+. ....+.+.+++.+.- -||+..++ ....+|+.+ +.|+|. .++++|...
T Consensus 198 ~~rv~~~--~~d~--~~~~~~~~D~v~~~~--~lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 198 ADRMRGI--AVDI--YKESYPEADAVLFCR--ILYSANEQ-LSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred cceEEEE--ecCc--cCCCCCCCCEEEeEh--hhhcCChH-HHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 2 3443 2222 111122334544433 36776543 334566655 689995 445666533
No 13
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=85.81 E-value=9.6 Score=38.86 Aligned_cols=111 Identities=10% Similarity=0.090 Sum_probs=70.3
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccc-eeccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGS-RLVNI 282 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~-~l~~L 282 (479)
...|||+|.|.|.-=..|++++.. ..++|+|+-+.+.|+.+.++|.+ .++++++++ +..+. +...+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~--------~~~~~~iDiS~~mL~~a~~~l~~---~~p~~~v~~--i~gD~~~~~~~ 130 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQ--------PARYVPIDISADALKESAAALAA---DYPQLEVHG--ICADFTQPLAL 130 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhcc--------CCeEEEEECCHHHHHHHHHHHHh---hCCCceEEE--EEEcccchhhh
Confidence 367999999999655556665532 36799999999999999998864 233355443 43332 11111
Q ss_pred -c-CCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEeec
Q 041748 283 -R-KKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVEQE 328 (479)
Q Consensus 283 -~-~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE~e 328 (479)
. ...+..+++.+...++++..+ ....+|+.+ +.|+|.-..++.-+
T Consensus 131 ~~~~~~~~~~~~~~gs~~~~~~~~-e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 131 PPEPAAGRRLGFFPGSTIGNFTPE-EAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred hcccccCCeEEEEecccccCCCHH-HHHHHHHHHHHhcCCCCEEEEecc
Confidence 1 111246677766667777543 455778777 47899766665443
No 14
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=85.52 E-value=4.6 Score=40.83 Aligned_cols=144 Identities=20% Similarity=0.212 Sum_probs=79.6
Q ss_pred chhhhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHH
Q 041748 181 LAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFS 260 (479)
Q Consensus 181 fah~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA 260 (479)
-+++++-..||+.+.... ...+--+|+|||-|-|. .+.-+...- |....+|.|+.+... .+.++.|.+-.
T Consensus 12 p~~YA~~~~vl~El~~r~-p~f~P~~vLD~GsGpGt---a~wAa~~~~-----~~~~~~~~vd~s~~~-~~l~~~l~~~~ 81 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRL-PDFRPRSVLDFGSGPGT---ALWAAREVW-----PSLKEYTCVDRSPEM-LELAKRLLRAG 81 (274)
T ss_pred hHHHHHHHHHHHHHHHhC-cCCCCceEEEecCChHH---HHHHHHHHh-----cCceeeeeecCCHHH-HHHHHHHHhcc
Confidence 366788888888887421 01345699999999884 222111111 135789999987654 45676665533
Q ss_pred hhcCCeeEEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEeecCCCCCCchhHH
Q 041748 261 KSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVEQEGSRSPRNFLSR 339 (479)
Q Consensus 261 ~~lgnvpFeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE~ea~~ns~~F~~R 339 (479)
.... ........ ......+.+.+-|++. +.|..|.+ ..+..+++.+ ..++| ++||+|+ +...+-..+.+
T Consensus 82 ~~~~--~~~~~~~~---~~~~~~~~~~DLvi~s--~~L~EL~~-~~r~~lv~~LW~~~~~-~LVlVEp-Gt~~Gf~~i~~ 151 (274)
T PF09243_consen 82 PNNR--NAEWRRVL---YRDFLPFPPDDLVIAS--YVLNELPS-AARAELVRSLWNKTAP-VLVLVEP-GTPAGFRRIAE 151 (274)
T ss_pred cccc--cchhhhhh---hcccccCCCCcEEEEe--hhhhcCCc-hHHHHHHHHHHHhccC-cEEEEcC-CChHHHHHHHH
Confidence 3221 11111100 0011223333333332 33566666 5667777777 56677 7779986 44445556666
Q ss_pred HHHHH
Q 041748 340 FMESL 344 (479)
Q Consensus 340 F~eaL 344 (479)
.++.|
T Consensus 152 aR~~l 156 (274)
T PF09243_consen 152 ARDQL 156 (274)
T ss_pred HHHHH
Confidence 66665
No 15
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=85.08 E-value=1.7 Score=36.41 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=53.3
Q ss_pred EEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccccCCC
Q 041748 207 VIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKKK 286 (479)
Q Consensus 207 IIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~~~ 286 (479)
|+|+|.|.|..=..|.+.+ .+ + |..++|||+.+.+.++.+.++..+ .+ ++.+| +..+. ..+....
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~---~--~~~~~~gvD~s~~~l~~~~~~~~~----~~-~~~~~--~~~D~--~~l~~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA---G--PSSRVIGVDISPEMLELAKKRFSE----DG-PKVRF--VQADA--RDLPFSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------SEEEEEES-HHHHHHHHHHSHH----TT-TTSEE--EESCT--TCHHHHS
T ss_pred CEEeecCCcHHHHHHHHHh-hh---c--ccceEEEEECCHHHHHHHHHhchh----cC-CceEE--EECCH--hHCcccC
Confidence 7999999996655555555 22 2 458999999999888887766655 33 44455 33322 1122222
Q ss_pred CcE-EEEeeccccccccchhhhHHHHHHhH-ccCC
Q 041748 287 HET-VAANLVFHLNTLKIYLKISDTLNLVR-SIKP 319 (479)
Q Consensus 287 ~Ea-LaVN~~~~Lh~L~~~~~~~~~L~~Ir-~L~P 319 (479)
+.. +||++...+||+.+. .+..+|+.+. -++|
T Consensus 66 ~~~D~v~~~~~~~~~~~~~-~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHLSPE-ELEALLRRIARLLRP 99 (101)
T ss_dssp SSEEEEEE-TTGGGGSSHH-HHHHHHHHHHHTEEE
T ss_pred CCeeEEEEcCCccCCCCHH-HHHHHHHHHHHHhCC
Confidence 223 455545557887643 5566666654 3444
No 16
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=84.79 E-value=10 Score=39.40 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=88.4
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccc-eecc-
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGS-RLVN- 281 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~-~l~~- 281 (479)
...|||||.|.|..=..||++|... +. ..+-.+|+-+.+.|+++.++|. .+.++ ..++++|..+. +...
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~---~~--~~~Y~plDIS~~~L~~a~~~L~--~~~~p--~l~v~~l~gdy~~~l~~ 147 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQ---KK--SVDYYALDVSRSELQRTLAELP--LGNFS--HVRCAGLLGTYDDGLAW 147 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhc---CC--CceEEEEECCHHHHHHHHHhhh--hccCC--CeEEEEEEecHHHHHhh
Confidence 4589999999999999999999854 22 3678999999999999999997 34455 47778887643 1111
Q ss_pred cc---CCCCcEEEEeeccccccccchhhhHHHHHHhHc--cCCcEEEEEeecCC---------CCCC-chhHH-HHHHHH
Q 041748 282 IR---KKKHETVAANLVFHLNTLKIYLKISDTLNLVRS--IKPTIVTLVEQEGS---------RSPR-NFLSR-FMESLH 345 (479)
Q Consensus 282 L~---~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~--L~P~VvtlvE~ea~---------~ns~-~F~~R-F~eaL~ 345 (479)
+. ....-.++.-.-..+.++.. .....||+.+++ |+|.-..++--|.. +|.+ ....+ ..+.|.
T Consensus 148 l~~~~~~~~~r~~~flGSsiGNf~~-~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~ 226 (319)
T TIGR03439 148 LKRPENRSRPTTILWLGSSIGNFSR-PEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLV 226 (319)
T ss_pred cccccccCCccEEEEeCccccCCCH-HHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHH
Confidence 21 11112233333334444432 234579999977 89976666655543 2332 22233 356666
Q ss_pred HHHHHhhh
Q 041748 346 YFAAMFDS 353 (479)
Q Consensus 346 yYsalFDS 353 (479)
+--..++.
T Consensus 227 ~~Nr~Lg~ 234 (319)
T TIGR03439 227 HANEILGS 234 (319)
T ss_pred HHHHHhCc
Confidence 66666554
No 17
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=83.44 E-value=15 Score=36.31 Aligned_cols=171 Identities=16% Similarity=0.183 Sum_probs=64.9
Q ss_pred ceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccc
Q 041748 203 RALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNI 282 (479)
Q Consensus 203 ~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L 282 (479)
+-.+|+|++.|.|-- ...|+.+. +|.-+|||++.+.+-|+.+.+++.+.... ||.|. .. +..+|
T Consensus 47 ~g~~vLDv~~GtG~~----~~~l~~~~----~~~~~v~~vD~s~~ML~~a~~k~~~~~~~--~i~~v----~~--da~~l 110 (233)
T PF01209_consen 47 PGDRVLDVACGTGDV----TRELARRV----GPNGKVVGVDISPGMLEVARKKLKREGLQ--NIEFV----QG--DAEDL 110 (233)
T ss_dssp S--EEEEET-TTSHH----HHHHGGGS----S---EEEEEES-HHHHHHHHHHHHHTT----SEEEE----E---BTTB-
T ss_pred CCCEEEEeCCChHHH----HHHHHHHC----CCccEEEEecCCHHHHHHHHHHHHhhCCC--CeeEE----Ec--CHHHh
Confidence 457999999999943 33445551 23569999999999999999888866543 24332 22 22235
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHHHhHccCCcEE-EEEeecCCCCCCchhHHHHHHHHHHHHHh-hhhhhcCCC
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIV-TLVEQEGSRSPRNFLSRFMESLHYFAAMF-DSLDDCLPQ 360 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~Vv-tlvE~ea~~ns~~F~~RF~eaL~yYsalF-DSLda~lp~ 360 (479)
...++..=+|-|.|.||++.+.. ..+=...|-|+|.-. +++|-.... ..++ .....+|...+ =-+...+..
T Consensus 111 p~~d~sfD~v~~~fglrn~~d~~--~~l~E~~RVLkPGG~l~ile~~~p~--~~~~---~~~~~~y~~~ilP~~g~l~~~ 183 (233)
T PF01209_consen 111 PFPDNSFDAVTCSFGLRNFPDRE--RALREMYRVLKPGGRLVILEFSKPR--NPLL---RALYKFYFKYILPLIGRLLSG 183 (233)
T ss_dssp -S-TT-EEEEEEES-GGG-SSHH--HHHHHHHHHEEEEEEEEEEEEEB-S--SHHH---HHHHHH---------------
T ss_pred cCCCCceeEEEHHhhHHhhCCHH--HHHHHHHHHcCCCeEEEEeeccCCC--Cchh---hceeeeeeccccccccccccc
Confidence 56667777888999999997632 233345577899653 345532211 1223 33333444422 112222222
Q ss_pred CChHHHHHHHHHHhHHHHhhhhcCCCCCCCCCCccccccchhHHHHHHHcCCCccccCC
Q 041748 361 ESNKRLSIEKNYLGKEIKSMLNCDESDNGNYDNYYPRYERMETWKARMESHEFGGIKMS 419 (479)
Q Consensus 361 ~s~eR~~iEr~~lg~eI~niVa~eg~~~g~~~~R~ERhE~~~~W~~rm~~AGF~~v~ls 419 (479)
+ +.. -.+|.+-|.+... .++-.+.|+.+||+.+...
T Consensus 184 ~---~~~--Y~yL~~Si~~f~~------------------~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 184 D---REA--YRYLPESIRRFPS------------------PEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp -----------------------------------------------------------
T ss_pred c---ccc--ccccccccccccc------------------ccccccccccccccccccc
Confidence 1 122 2356655555433 2345678999999877543
No 18
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=82.22 E-value=21 Score=33.84 Aligned_cols=111 Identities=12% Similarity=0.171 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcC
Q 041748 185 TANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFR 264 (479)
Q Consensus 185 tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lg 264 (479)
++...|++++.-. +.-+|+|+|.|.|.. ...||.+ | .++|||+.+...++.+.++ ++.-+
T Consensus 17 ~~~~~l~~~~~~~-----~~~~vLDiGcG~G~~----a~~la~~---g----~~V~~iD~s~~~l~~a~~~----~~~~~ 76 (195)
T TIGR00477 17 TTHSAVREAVKTV-----APCKTLDLGCGQGRN----SLYLSLA---G----YDVRAWDHNPASIASVLDM----KAREN 76 (195)
T ss_pred CchHHHHHHhccC-----CCCcEEEeCCCCCHH----HHHHHHC---C----CeEEEEECCHHHHHHHHHH----HHHhC
Confidence 5667888888643 346899999999953 3344555 2 3789999887766665543 33344
Q ss_pred CeeEEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEE
Q 041748 265 NLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIV 322 (479)
Q Consensus 265 nvpFeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~Vv 322 (479)
++..+.. .+.....+. ..=+.++.+.+ +|++... .+..+++.+ +.|+|.-.
T Consensus 77 -~~v~~~~--~d~~~~~~~-~~fD~I~~~~~--~~~~~~~-~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 77 -LPLRTDA--YDINAAALN-EDYDFIFSTVV--FMFLQAG-RVPEIIANMQAHTRPGGY 128 (195)
T ss_pred -CCceeEe--ccchhcccc-CCCCEEEEecc--cccCCHH-HHHHHHHHHHHHhCCCcE
Confidence 6543332 221111121 12245554444 5777543 445666655 67899975
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=82.16 E-value=16 Score=39.39 Aligned_cols=114 Identities=11% Similarity=0.130 Sum_probs=62.0
Q ss_pred HHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCee
Q 041748 188 QAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLV 267 (479)
Q Consensus 188 qAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvp 267 (479)
..|++.+... ..-+|+|+|.|.|. +...|+.+ +. ++|||+.+...++.... + ....+|+.
T Consensus 27 ~~il~~l~~~-----~~~~vLDlGcG~G~----~~~~la~~---~~----~v~giD~s~~~l~~a~~-~---~~~~~~i~ 86 (475)
T PLN02336 27 PEILSLLPPY-----EGKSVLELGAGIGR----FTGELAKK---AG----QVIALDFIESVIKKNES-I---NGHYKNVK 86 (475)
T ss_pred hHHHhhcCcc-----CCCEEEEeCCCcCH----HHHHHHhh---CC----EEEEEeCCHHHHHHHHH-H---hccCCceE
Confidence 4555665432 23489999999993 44456655 21 78999988877754322 1 12222233
Q ss_pred EEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 268 FEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 268 FeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
|.- .+.....+...++..=+|-|.+.|||+.+. ....+|..+ +-|+|.-.++..
T Consensus 87 ~~~----~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~-~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 87 FMC----ADVTSPDLNISDGSVDLIFSNWLLMYLSDK-EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred EEE----ecccccccCCCCCCEEEEehhhhHHhCCHH-HHHHHHHHHHHhcCCCeEEEEE
Confidence 321 111111122223323233344558899764 345666655 558999877664
No 20
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=81.60 E-value=61 Score=32.45 Aligned_cols=191 Identities=16% Similarity=0.225 Sum_probs=113.4
Q ss_pred cCCCccchh-hhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHH
Q 041748 175 VSPYFQLAH-FTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETE 253 (479)
Q Consensus 175 ~sP~~kfah-~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg 253 (479)
..+++.|+. .+=+++..+.+.- .+--+|+|.+.|.| .| .-.|++. .| .-+|||++.+...|+...
T Consensus 27 ~n~~~S~g~~~~Wr~~~i~~~~~-----~~g~~vLDva~GTG-d~---a~~~~k~--~g---~g~v~~~D~s~~ML~~a~ 92 (238)
T COG2226 27 MNDLMSFGLHRLWRRALISLLGI-----KPGDKVLDVACGTG-DM---ALLLAKS--VG---TGEVVGLDISESMLEVAR 92 (238)
T ss_pred hcccccCcchHHHHHHHHHhhCC-----CCCCEEEEecCCcc-HH---HHHHHHh--cC---CceEEEEECCHHHHHHHH
Confidence 345666664 5556665555532 13589999999999 33 3334444 22 689999999999898888
Q ss_pred HHHHHHHhhcCCeeEEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEeecCCCC
Q 041748 254 NRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVEQEGSRS 332 (479)
Q Consensus 254 ~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE~ea~~n 332 (479)
+++.+ .++..++| |..+ ..+|...++-.=+|.+.|.||++.| .+.+|+-+ |=|+|...+++-.=....
T Consensus 93 ~k~~~----~~~~~i~f--v~~d--Ae~LPf~D~sFD~vt~~fglrnv~d---~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 93 EKLKK----KGVQNVEF--VVGD--AENLPFPDNSFDAVTISFGLRNVTD---IDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred HHhhc----cCccceEE--EEec--hhhCCCCCCccCEEEeeehhhcCCC---HHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 77654 33122444 3332 2335666776778888889999875 45666544 668999876554333344
Q ss_pred CCchhHHHHHHHH-HHHH-HhhhhhhcCCCCChHHHHHHHHHHhHHHHhhhhcCCCCCCCCCCccccccchhHHHHHHHc
Q 041748 333 PRNFLSRFMESLH-YFAA-MFDSLDDCLPQESNKRLSIEKNYLGKEIKSMLNCDESDNGNYDNYYPRYERMETWKARMES 410 (479)
Q Consensus 333 s~~F~~RF~eaL~-yYsa-lFDSLda~lp~~s~eR~~iEr~~lg~eI~niVa~eg~~~g~~~~R~ERhE~~~~W~~rm~~ 410 (479)
.+. |...++ ||.. ++=.+......+.. . ..+|..-|... -..+.-...|+.
T Consensus 162 ~~~----~~~~~~~~~~~~v~P~~g~~~~~~~~---~--y~yL~eSi~~~------------------p~~~~l~~~~~~ 214 (238)
T COG2226 162 NPV----LRKAYILYYFKYVLPLIGKLVAKDAE---A--YEYLAESIRRF------------------PDQEELKQMIEK 214 (238)
T ss_pred chh----hHHHHHHHHHHhHhhhhceeeecChH---H--HHHHHHHHHhC------------------CCHHHHHHHHHh
Confidence 433 333333 4444 55555544332222 2 23455444443 334455667788
Q ss_pred CCCcccc
Q 041748 411 HEFGGIK 417 (479)
Q Consensus 411 AGF~~v~ 417 (479)
+||..+.
T Consensus 215 ~gf~~i~ 221 (238)
T COG2226 215 AGFEEVR 221 (238)
T ss_pred cCceEEe
Confidence 9997764
No 21
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=80.56 E-value=53 Score=31.10 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=56.2
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceecccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIR 283 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~ 283 (479)
..+|+|+|.|.|. +...++.+ .|+..++|+++.+...++.+.+++... .+. .+..|.. .+.....+.
T Consensus 52 ~~~vldiG~G~G~----~~~~l~~~----~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~-~~~~~~~--~d~~~~~~~ 118 (239)
T PRK00216 52 GDKVLDLACGTGD----LAIALAKA----VGKTGEVVGLDFSEGMLAVGREKLRDL--GLS-GNVEFVQ--GDAEALPFP 118 (239)
T ss_pred CCeEEEeCCCCCH----HHHHHHHH----cCCCCeEEEEeCCHHHHHHHHHhhccc--ccc-cCeEEEe--cccccCCCC
Confidence 4789999999984 34445554 234689999998887777766655321 111 2333332 221111111
Q ss_pred CCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEE
Q 041748 284 KKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLV 325 (479)
Q Consensus 284 ~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~Vvtlv 325 (479)
...-+.|+. .+.||++.+ ...+|..+ +.|+|.-.+++
T Consensus 119 ~~~~D~I~~--~~~l~~~~~---~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 119 DNSFDAVTI--AFGLRNVPD---IDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred CCCccEEEE--ecccccCCC---HHHHHHHHHHhccCCcEEEE
Confidence 111234433 344677654 33455444 56888865544
No 22
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=80.34 E-value=27 Score=36.27 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=58.2
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcC-CeeEEEEEeeccceeccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFR-NLVFEFQGLIRGSRLVNI 282 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lg-nvpFeF~~v~~~~~l~~L 282 (479)
...|+|+|.|.|. +...|+.+ | .++|||+.+.+.++...++ ++.-+ .-..+|.. .+. .++
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~---g----~~V~GID~s~~~i~~Ar~~----~~~~~~~~~i~~~~--~da--e~l 192 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM---G----ATVTGVDAVDKNVKIARLH----ADMDPVTSTIEYLC--TTA--EKL 192 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc---C----CEEEEEeCCHHHHHHHHHH----HHhcCcccceeEEe--cCH--HHh
Confidence 3589999999996 45567653 2 3799999988777666544 22211 01233332 211 112
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
...++..=+|-|...|||+.+. ..+|+.+ +-|+|.-.+++.
T Consensus 193 ~~~~~~FD~Vi~~~vLeHv~d~---~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 193 ADEGRKFDAVLSLEVIEHVANP---AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred hhccCCCCEEEEhhHHHhcCCH---HHHHHHHHHHcCCCcEEEEE
Confidence 2222222233444568998764 3566655 457898887776
No 23
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=79.72 E-value=14 Score=38.53 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=65.2
Q ss_pred ceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCC--eeEEEEE--eeccc-
Q 041748 203 RALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRN--LVFEFQG--LIRGS- 277 (479)
Q Consensus 203 ~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgn--vpFeF~~--v~~~~- 277 (479)
+..+|+|++.|.|. .|.+=... + -=.+.||+.+.+.++++.+|..+.-+.-.. ..+.|.. +..+.
T Consensus 62 ~~~~VLDl~CGkGG---DL~Kw~~~-----~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f 131 (331)
T PF03291_consen 62 PGLTVLDLCCGKGG---DLQKWQKA-----K--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCF 131 (331)
T ss_dssp TT-EEEEET-TTTT---THHHHHHT-----T---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTC
T ss_pred CCCeEEEecCCCch---hHHHHHhc-----C--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccc
Confidence 46999999999994 12221111 2 235789999999999999999665532110 2334433 23322
Q ss_pred --eecc-ccCCCCcEEEEeeccccccccc-hhhhHHHHHHh-HccCCcEEEEE
Q 041748 278 --RLVN-IRKKKHETVAANLVFHLNTLKI-YLKISDTLNLV-RSIKPTIVTLV 325 (479)
Q Consensus 278 --~l~~-L~~~~~EaLaVN~~~~Lh~L~~-~~~~~~~L~~I-r~L~P~Vvtlv 325 (479)
.+.. +.......=+|+|+|.||+.-. +.....+|..| ..|+|--+.|.
T Consensus 132 ~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 132 SESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp CSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1211 2222346779999999999854 33455677666 67888766544
No 24
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=78.89 E-value=9.3 Score=38.32 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=38.9
Q ss_pred ceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHH
Q 041748 203 RALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENR 255 (479)
Q Consensus 203 ~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~r 255 (479)
+.++|.|.|.+.|--.-+|--.|++.-.....+..+|||++.+...|+.+.+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 46999999999998777776666654101113468999999988888777654
No 25
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=76.80 E-value=19 Score=35.45 Aligned_cols=105 Identities=19% Similarity=0.184 Sum_probs=61.6
Q ss_pred HHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeE
Q 041748 189 AILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVF 268 (479)
Q Consensus 189 AILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpF 268 (479)
.+++.+.-. +.-+|+|+|.|.| .+...|+.+. |..++|||+.+...++.+. .-+ +.|
T Consensus 20 ~ll~~l~~~-----~~~~vLDlGcG~G----~~~~~l~~~~-----p~~~v~gvD~s~~~~~~a~--------~~~-~~~ 76 (255)
T PRK14103 20 DLLARVGAE-----RARRVVDLGCGPG----NLTRYLARRW-----PGAVIEALDSSPEMVAAAR--------ERG-VDA 76 (255)
T ss_pred HHHHhCCCC-----CCCEEEEEcCCCC----HHHHHHHHHC-----CCCEEEEEECCHHHHHHHH--------hcC-CcE
Confidence 456665432 3568999999999 3556777761 2468999998876665543 233 554
Q ss_pred EEEEeeccceecccc-CCCCcEEEEeeccccccccchhhhHHHHHH-hHccCCcEEEEEee
Q 041748 269 EFQGLIRGSRLVNIR-KKKHETVAANLVFHLNTLKIYLKISDTLNL-VRSIKPTIVTLVEQ 327 (479)
Q Consensus 269 eF~~v~~~~~l~~L~-~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~-Ir~L~P~VvtlvE~ 327 (479)
. ..+. ..+. ...=+.|+.|.. |||+.+. ..+|.. .+.|+|.-.+++..
T Consensus 77 ~----~~d~--~~~~~~~~fD~v~~~~~--l~~~~d~---~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 77 R----TGDV--RDWKPKPDTDVVVSNAA--LQWVPEH---ADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred E----EcCh--hhCCCCCCceEEEEehh--hhhCCCH---HHHHHHHHHhCCCCcEEEEEc
Confidence 2 1221 1121 112245555554 7888653 345554 46799997776653
No 26
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=76.67 E-value=20 Score=35.27 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=62.8
Q ss_pred HHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeE
Q 041748 189 AILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVF 268 (479)
Q Consensus 189 AILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpF 268 (479)
.|++.+.. +.-+|+|+|.|.|. +...|+.+ + .++|+|+.+.+.++.+.+++.+ .| +.-
T Consensus 36 ~~l~~l~~------~~~~vLDiGcG~G~----~a~~la~~---g----~~v~~vD~s~~~l~~a~~~~~~----~g-~~~ 93 (255)
T PRK11036 36 RLLAELPP------RPLRVLDAGGGEGQ----TAIKLAEL---G----HQVILCDLSAEMIQRAKQAAEA----KG-VSD 93 (255)
T ss_pred HHHHhcCC------CCCEEEEeCCCchH----HHHHHHHc---C----CEEEEEECCHHHHHHHHHHHHh----cC-Ccc
Confidence 46666643 34699999999993 45566665 2 4799999998888877766543 33 321
Q ss_pred EEEEeeccc-eeccccCCCCcEEEEeeccccccccchhhhHHHHHH-hHccCCcEEEEE
Q 041748 269 EFQGLIRGS-RLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNL-VRSIKPTIVTLV 325 (479)
Q Consensus 269 eF~~v~~~~-~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~-Ir~L~P~Vvtlv 325 (479)
....+..+. ++..+.-..=++|+ |...|||+.+. ..+|.. .+-|+|.-.+++
T Consensus 94 ~v~~~~~d~~~l~~~~~~~fD~V~--~~~vl~~~~~~---~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 94 NMQFIHCAAQDIAQHLETPVDLIL--FHAVLEWVADP---KSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred ceEEEEcCHHHHhhhcCCCCCEEE--ehhHHHhhCCH---HHHHHHHHHHcCCCeEEEE
Confidence 122222222 11111111223443 34457888653 244444 467899887765
No 27
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=76.46 E-value=21 Score=34.31 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=58.2
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccccC
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRK 284 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~ 284 (479)
-.|+|+|.|.|.. +..|+.. . |..++|||+.+.+.++.+.+++ +++.+.- . ++.. ..
T Consensus 45 ~~VLDiGCG~G~~----~~~L~~~--~---~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~----~--d~~~-~~ 101 (204)
T TIGR03587 45 ASILELGANIGMN----LAALKRL--L---PFKHIYGVEINEYAVEKAKAYL-------PNINIIQ----G--SLFD-PF 101 (204)
T ss_pred CcEEEEecCCCHH----HHHHHHh--C---CCCeEEEEECCHHHHHHHHhhC-------CCCcEEE----e--eccC-CC
Confidence 4699999999943 3344443 1 1357999999888787665432 2233321 1 1111 11
Q ss_pred CCC--cEEEEeeccccccccchhhhHHHHHHhHccCCcEEEEEeecC
Q 041748 285 KKH--ETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQEG 329 (479)
Q Consensus 285 ~~~--EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~VvtlvE~ea 329 (479)
.++ ++|+. ...|||+.. ..+..+++.+.+..-+.++++|..+
T Consensus 102 ~~~sfD~V~~--~~vL~hl~p-~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 102 KDNFFDLVLT--KGVLIHINP-DNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred CCCCEEEEEE--CChhhhCCH-HHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 222 34443 444778853 3556777777777677888888654
No 28
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=73.80 E-value=33 Score=32.59 Aligned_cols=113 Identities=18% Similarity=0.223 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcC
Q 041748 185 TANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFR 264 (479)
Q Consensus 185 tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lg 264 (479)
.+++.+++.+... +.-.|+|+|.|.|. +...||.+ | .+||||+.+...++.+.++... -+
T Consensus 17 ~~~~~l~~~l~~~-----~~~~vLDiGcG~G~----~a~~La~~---g----~~V~gvD~S~~~i~~a~~~~~~----~~ 76 (197)
T PRK11207 17 RTHSEVLEAVKVV-----KPGKTLDLGCGNGR----NSLYLAAN---G----FDVTAWDKNPMSIANLERIKAA----EN 76 (197)
T ss_pred CChHHHHHhcccC-----CCCcEEEECCCCCH----HHHHHHHC---C----CEEEEEeCCHHHHHHHHHHHHH----cC
Confidence 3455666666542 34689999999995 33446655 2 3899999988777666554332 23
Q ss_pred Cee-EEEEEeeccceeccccCC-CCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEE
Q 041748 265 NLV-FEFQGLIRGSRLVNIRKK-KHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLV 325 (479)
Q Consensus 265 nvp-FeF~~v~~~~~l~~L~~~-~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~Vvtlv 325 (479)
++ .++. ..+. ..+... .=+.|+.+.. +|++.+. .+..+++.+ +.|+|.-.++.
T Consensus 77 -~~~v~~~--~~d~--~~~~~~~~fD~I~~~~~--~~~~~~~-~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 77 -LDNLHTA--VVDL--NNLTFDGEYDFILSTVV--LMFLEAK-TIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -CCcceEE--ecCh--hhCCcCCCcCEEEEecc--hhhCCHH-HHHHHHHHHHHHcCCCcEEEE
Confidence 32 2332 2222 112221 2244554444 5666532 345666555 67899987443
No 29
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=71.69 E-value=36 Score=34.29 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=62.4
Q ss_pred HHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCe
Q 041748 187 NQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNL 266 (479)
Q Consensus 187 NqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnv 266 (479)
.+.+++++.-- +.-+|+|+|.|.|. +...|+.+ | .++|||+.+...++.+.++ |+..+ +
T Consensus 109 ~~~~~~~~~~~-----~~~~vLDlGcG~G~----~~~~la~~---g----~~V~avD~s~~ai~~~~~~----~~~~~-l 167 (287)
T PRK12335 109 HSEVLEAVQTV-----KPGKALDLGCGQGR----NSLYLALL---G----FDVTAVDINQQSLENLQEI----AEKEN-L 167 (287)
T ss_pred cHHHHHHhhcc-----CCCCEEEeCCCCCH----HHHHHHHC---C----CEEEEEECCHHHHHHHHHH----HHHcC-C
Confidence 44566665431 12389999999995 34446655 2 4899999988777655543 44445 6
Q ss_pred eEEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEE
Q 041748 267 VFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVT 323 (479)
Q Consensus 267 pFeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~Vvt 323 (479)
++++.. .+.....+. ..=+.|+.+.+ ||++.++ ....+|+.+ +.|+|.-+.
T Consensus 168 ~v~~~~--~D~~~~~~~-~~fD~I~~~~v--l~~l~~~-~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 168 NIRTGL--YDINSASIQ-EEYDFILSTVV--LMFLNRE-RIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred ceEEEE--echhccccc-CCccEEEEcch--hhhCCHH-HHHHHHHHHHHhcCCCcEE
Confidence 555432 221111121 11245555544 6777543 455666655 678997763
No 30
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=71.56 E-value=80 Score=32.76 Aligned_cols=104 Identities=15% Similarity=0.090 Sum_probs=61.3
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHh-hcCCeeEEEEEeeccceeccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSK-SFRNLVFEFQGLIRGSRLVNI 282 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~-~lgnvpFeF~~v~~~~~l~~L 282 (479)
...|+|+|.|.|. +...|+.+ | .+||||+.+...++...++....-. ..++...+|... + +..+
T Consensus 145 ~~~VLDlGcGtG~----~a~~la~~---g----~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~--D--l~~l 209 (315)
T PLN02585 145 GVTVCDAGCGTGS----LAIPLALE---G----AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN--D--LESL 209 (315)
T ss_pred CCEEEEecCCCCH----HHHHHHHC---C----CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc--c--hhhc
Confidence 4689999999995 44556654 2 3899999999888887776543210 111123344321 1 1112
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHHHhHccCCcEEEEEe
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVE 326 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~VvtlvE 326 (479)
. ..=+ +|| |...|+|++++ ....+++.++.+.|..+++.-
T Consensus 210 ~-~~fD-~Vv-~~~vL~H~p~~-~~~~ll~~l~~l~~g~liIs~ 249 (315)
T PLN02585 210 S-GKYD-TVT-CLDVLIHYPQD-KADGMIAHLASLAEKRLIISF 249 (315)
T ss_pred C-CCcC-EEE-EcCEEEecCHH-HHHHHHHHHHhhcCCEEEEEe
Confidence 1 1112 233 44456787664 345677888888888776643
No 31
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=71.32 E-value=39 Score=35.39 Aligned_cols=116 Identities=18% Similarity=0.163 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCC
Q 041748 186 ANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRN 265 (479)
Q Consensus 186 ANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgn 265 (479)
....+++.+... ..=+|+|+|.|.|. +-..|+.+. |..++|+|+.+...++.+.+++.. -+
T Consensus 184 gt~lLl~~l~~~-----~~g~VLDlGCG~G~----ls~~la~~~-----p~~~v~~vDis~~Al~~A~~nl~~----n~- 244 (342)
T PRK09489 184 GSQLLLSTLTPH-----TKGKVLDVGCGAGV----LSAVLARHS-----PKIRLTLSDVSAAALESSRATLAA----NG- 244 (342)
T ss_pred HHHHHHHhcccc-----CCCeEEEeccCcCH----HHHHHHHhC-----CCCEEEEEECCHHHHHHHHHHHHH----cC-
Confidence 335566666532 12369999999996 445566651 357899999998888888776654 23
Q ss_pred eeEEEEEeeccceeccccCCCCcEEEEeeccccccccc--hhhhHHHHHH-hHccCCcEEEEEe
Q 041748 266 LVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKI--YLKISDTLNL-VRSIKPTIVTLVE 326 (479)
Q Consensus 266 vpFeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~--~~~~~~~L~~-Ir~L~P~VvtlvE 326 (479)
+..++.. .+. ...+ ..+=+.|+.|-.|+ .-.+ ......+++. .+.|+|.-..+..
T Consensus 245 l~~~~~~--~D~-~~~~-~~~fDlIvsNPPFH--~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 245 LEGEVFA--SNV-FSDI-KGRFDMIISNPPFH--DGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred CCCEEEE--ccc-cccc-CCCccEEEECCCcc--CCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 5555432 221 0011 12336788888763 3221 1233455554 4668998766554
No 32
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=69.87 E-value=97 Score=30.88 Aligned_cols=115 Identities=15% Similarity=0.171 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhc
Q 041748 184 FTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSF 263 (479)
Q Consensus 184 ~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~l 263 (479)
+-+.+.|++.+.- .+.-+|+|+|.|.|.- ...|+.+ . ..++|||+.+...++.+.++... .
T Consensus 38 ~~~~~~~l~~l~l-----~~~~~VLDiGcG~G~~----a~~la~~--~----~~~v~giD~s~~~~~~a~~~~~~----~ 98 (263)
T PTZ00098 38 IEATTKILSDIEL-----NENSKVLDIGSGLGGG----CKYINEK--Y----GAHVHGVDICEKMVNIAKLRNSD----K 98 (263)
T ss_pred hHHHHHHHHhCCC-----CCCCEEEEEcCCCChh----hHHHHhh--c----CCEEEEEECCHHHHHHHHHHcCc----C
Confidence 3445666666642 2457899999999963 2344443 1 24899999888777766665432 1
Q ss_pred CCeeEEEEEeeccceeccccCCCC--cEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 264 RNLVFEFQGLIRGSRLVNIRKKKH--ETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 264 gnvpFeF~~v~~~~~l~~L~~~~~--EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
+++. |.. .+. ......++ +.|+.+ ..++|+... ....+|+.+ +.|+|.-.+++.
T Consensus 99 ~~i~--~~~--~D~--~~~~~~~~~FD~V~s~--~~l~h~~~~-d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 99 NKIE--FEA--NDI--LKKDFPENTFDMIYSR--DAILHLSYA-DKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred CceE--EEE--CCc--ccCCCCCCCeEEEEEh--hhHHhCCHH-HHHHHHHHHHHHcCCCcEEEEE
Confidence 2233 322 111 11122222 333332 335666432 345666655 679998776653
No 33
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=69.56 E-value=4.8 Score=33.27 Aligned_cols=95 Identities=23% Similarity=0.245 Sum_probs=44.0
Q ss_pred EeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccccC-CC
Q 041748 208 IDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRK-KK 286 (479)
Q Consensus 208 IDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~-~~ 286 (479)
+|+|.|.|.= ...|..+ . |..++|+++.+...++.+.+++.+.-.. .+++-.+... +...... ..
T Consensus 1 LdiGcG~G~~----~~~l~~~--~---~~~~~~~~D~s~~~l~~a~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~ 66 (99)
T PF08242_consen 1 LDIGCGTGRL----LRALLEE--L---PDARYTGVDISPSMLERARERLAELGND----NFERLRFDVL-DLFDYDPPES 66 (99)
T ss_dssp -EESTTTS-T----TTTHHHH--C----EEEEEEEESSSSTTSTTCCCHHHCT-------EEEEE--SS-S---CCC---
T ss_pred CEeCccChHH----HHHHHHh--C---CCCEEEEEECCHHHHHHHHHHhhhcCCc----ceeEEEeecC-Chhhcccccc
Confidence 4778777743 3334443 1 5799999998887777777776654432 2222211111 1111111 12
Q ss_pred CcEEEEeeccccccccchhhhHHHHHHhH-ccCCcE
Q 041748 287 HETVAANLVFHLNTLKIYLKISDTLNLVR-SIKPTI 321 (479)
Q Consensus 287 ~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir-~L~P~V 321 (479)
=+.|+.+. .|||+. ....+|+.++ -|+|.-
T Consensus 67 fD~V~~~~--vl~~l~---~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 67 FDLVVASN--VLHHLE---DIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp -SEEEEE---TTS--S----HHHHHHHHTTT-TSS-
T ss_pred cceehhhh--hHhhhh---hHHHHHHHHHHHcCCCC
Confidence 23455443 478882 4457777764 577754
No 34
>PRK05785 hypothetical protein; Provisional
Probab=69.40 E-value=86 Score=30.55 Aligned_cols=94 Identities=9% Similarity=0.065 Sum_probs=53.9
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceecccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIR 283 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~ 283 (479)
.-.|+|+|.|.|. +...|+.+ . ..+||||+.+.+.++....+ . ++ +..+ ...+.
T Consensus 52 ~~~VLDlGcGtG~----~~~~l~~~--~----~~~v~gvD~S~~Ml~~a~~~--------~--~~----~~~d--~~~lp 105 (226)
T PRK05785 52 PKKVLDVAAGKGE----LSYHFKKV--F----KYYVVALDYAENMLKMNLVA--------D--DK----VVGS--FEALP 105 (226)
T ss_pred CCeEEEEcCCCCH----HHHHHHHh--c----CCEEEEECCCHHHHHHHHhc--------c--ce----EEec--hhhCC
Confidence 3579999999993 34456655 2 14899999988877664432 1 11 1111 12233
Q ss_pred CCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEee
Q 041748 284 KKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVEQ 327 (479)
Q Consensus 284 ~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE~ 327 (479)
..++..=+|-+.+.|||+.+. ..+|+.+ |-|+|.++ ++|-
T Consensus 106 ~~d~sfD~v~~~~~l~~~~d~---~~~l~e~~RvLkp~~~-ile~ 146 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASDNI---EKVIAEFTRVSRKQVG-FIAM 146 (226)
T ss_pred CCCCCEEEEEecChhhccCCH---HHHHHHHHHHhcCceE-EEEe
Confidence 444434444555568887653 3455544 56788543 5553
No 35
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=66.54 E-value=54 Score=31.30 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=66.4
Q ss_pred chhhhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHH
Q 041748 181 LAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFS 260 (479)
Q Consensus 181 fah~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA 260 (479)
.++-...+.+++.+.... .+.-+|+|+|.|.|. +...|+.+ + .+||||+.+.+.+..+.+++...-
T Consensus 36 ~~~~~~~~~~~~~l~~~~---~~~~~vLDiGcG~G~----~~~~la~~----~---~~v~gvD~s~~~i~~a~~~~~~~~ 101 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDP---LKGKRVLDAGCGTGL----LSIELAKR----G---AIVKAVDISEQMVQMARNRAQGRD 101 (219)
T ss_pred HHHHHHHHHHHHHHhcCC---CCCCEEEEEeCCCCH----HHHHHHHC----C---CEEEEEECCHHHHHHHHHHHHhcC
Confidence 345566677888776310 246799999999994 55566654 1 379999998888877777664321
Q ss_pred hhcCCeeEEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHHHhH-ccCCcEEEEE
Q 041748 261 KSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVR-SIKPTIVTLV 325 (479)
Q Consensus 261 ~~lgnvpFeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir-~L~P~Vvtlv 325 (479)
.. . ..+|.. .+. ..+. ..=++++.+ ..++|+... ....+++.+. .++|.+++..
T Consensus 102 ~~-~--~i~~~~--~d~--~~~~-~~fD~ii~~--~~l~~~~~~-~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 102 VA-G--NVEFEV--NDL--LSLC-GEFDIVVCM--DVLIHYPAS-DMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred CC-C--ceEEEE--CCh--hhCC-CCcCEEEEh--hHHHhCCHH-HHHHHHHHHHHHhCCCEEEEE
Confidence 10 1 334432 222 1121 222333332 235666432 3445565554 4567665443
No 36
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=66.49 E-value=8.8 Score=27.95 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=26.9
Q ss_pred cEEEEeeccccccccchhhhHHHHHHhHccCCcEEEEE
Q 041748 288 ETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLV 325 (479)
Q Consensus 288 EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~Vvtlv 325 (479)
|.+-|||....=+++..+...+++..|+.++|+-++++
T Consensus 1 e~i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSGHADREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp CEEE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEE
T ss_pred CEEEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEe
Confidence 45667766544346666778899999999999999887
No 37
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=66.01 E-value=30 Score=27.32 Aligned_cols=93 Identities=19% Similarity=0.160 Sum_probs=52.9
Q ss_pred EeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccccCCCC
Q 041748 208 IDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKKKH 287 (479)
Q Consensus 208 IDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~~~~ 287 (479)
+|+|.|.|.....|.+. +-.++|+++.+.+.++.+.+++ +..+ ++ |. .. +...+...++
T Consensus 1 LdiG~G~G~~~~~l~~~----------~~~~v~~~D~~~~~~~~~~~~~----~~~~-~~--~~--~~--d~~~l~~~~~ 59 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR----------GGASVTGIDISEEMLEQARKRL----KNEG-VS--FR--QG--DAEDLPFPDN 59 (95)
T ss_dssp EEET-TTSHHHHHHHHT----------TTCEEEEEES-HHHHHHHHHHT----TTST-EE--EE--ES--BTTSSSS-TT
T ss_pred CEecCcCCHHHHHHHhc----------cCCEEEEEeCCHHHHHHHHhcc----cccC-ch--he--ee--hHHhCccccc
Confidence 58888888655555443 2368999999888777666543 3333 55 21 12 2333555556
Q ss_pred cEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEE
Q 041748 288 ETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTL 324 (479)
Q Consensus 288 EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~Vvtl 324 (479)
..=+|-+...+||+. ....+++.+ |-|+|.-..+
T Consensus 60 sfD~v~~~~~~~~~~---~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 60 SFDVVFSNSVLHHLE---DPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp -EEEEEEESHGGGSS---HHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccccceeecc---CHHHHHHHHHHHcCcCeEEe
Confidence 555666666688882 334555444 6788876644
No 38
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=64.85 E-value=66 Score=32.88 Aligned_cols=133 Identities=17% Similarity=0.206 Sum_probs=92.3
Q ss_pred hhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhc
Q 041748 184 FTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSF 263 (479)
Q Consensus 184 ~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~l 263 (479)
.-+-.+||.+..+|-..-...-..||+|.|...-=.-|+++|+.| +. .+|...|+-+.+-|+.|.+-| ++..
T Consensus 59 TRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~---~~--~~ryvpiDv~a~iL~~ta~ai---~~~y 130 (321)
T COG4301 59 TRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHR---GS--LLRYVPIDVSASILRATATAI---LREY 130 (321)
T ss_pred chhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhc---CC--cceeeeecccHHHHHHHHHHH---HHhC
Confidence 446678998888763222235689999999998889999999998 33 489999999999998887655 3455
Q ss_pred CCeeEEEEEeeccce--eccccCCCCcEEEEeeccccccccchhhhHHHHHHhH-ccCCcEEEEEeec
Q 041748 264 RNLVFEFQGLIRGSR--LVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVR-SIKPTIVTLVEQE 328 (479)
Q Consensus 264 gnvpFeF~~v~~~~~--l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir-~L~P~VvtlvE~e 328 (479)
+ ..+.++|..+.+ +..+. +-|--|.|-.-..|..+... ....||..|+ .|+|-=-++.-.|
T Consensus 131 ~--~l~v~~l~~~~~~~La~~~-~~~~Rl~~flGStlGN~tp~-e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 131 P--GLEVNALCGDYELALAELP-RGGRRLFVFLGSTLGNLTPG-ECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred C--CCeEeehhhhHHHHHhccc-CCCeEEEEEecccccCCChH-HHHHHHHHHHhcCCCcceEEEecc
Confidence 4 567788876653 23333 45556666655555555432 3567888887 5889766655433
No 39
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=64.73 E-value=43 Score=35.68 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=63.1
Q ss_pred EEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccccCC
Q 041748 206 HVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKK 285 (479)
Q Consensus 206 HIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~~ 285 (479)
+|+|+|.|.|. +--.|+.+ . |..+||+|+.+...++.+.+++....-.-. -.++|. ..+. ...+.-.
T Consensus 231 ~VLDLGCGtGv----i~i~la~~----~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~-~~v~~~--~~D~-l~~~~~~ 297 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDK----N-PQAKVVFVDESPMAVASSRLNVETNMPEAL-DRCEFM--INNA-LSGVEPF 297 (378)
T ss_pred eEEEEeccccH----HHHHHHHh----C-CCCEEEEEECCHHHHHHHHHHHHHcCcccC-ceEEEE--Eccc-cccCCCC
Confidence 79999999995 34456665 1 467999999998888888777643321100 133443 2221 1112111
Q ss_pred CCcEEEEeeccccccccchhhhHHHHH-HhHccCCcEEEEEee
Q 041748 286 KHETVAANLVFHLNTLKIYLKISDTLN-LVRSIKPTIVTLVEQ 327 (479)
Q Consensus 286 ~~EaLaVN~~~~Lh~L~~~~~~~~~L~-~Ir~L~P~VvtlvE~ 327 (479)
.=+.|+.|-.|+..+-........++. .-+-|+|.-.+.++.
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 236788888876544222222234443 446789988777763
No 40
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=64.08 E-value=66 Score=31.44 Aligned_cols=110 Identities=21% Similarity=0.197 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCC
Q 041748 186 ANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRN 265 (479)
Q Consensus 186 ANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgn 265 (479)
-+..+++.+.-. +.-+|+|+|.|.| .+...|+.+ . |..++|||+.+...++.+.++ +.+
T Consensus 19 ~~~~ll~~~~~~-----~~~~vLDiGcG~G----~~~~~la~~--~---~~~~v~gvD~s~~~i~~a~~~-------~~~ 77 (258)
T PRK01683 19 PARDLLARVPLE-----NPRYVVDLGCGPG----NSTELLVER--W---PAARITGIDSSPAMLAEARSR-------LPD 77 (258)
T ss_pred HHHHHHhhCCCc-----CCCEEEEEcccCC----HHHHHHHHH--C---CCCEEEEEECCHHHHHHHHHh-------CCC
Confidence 355666665432 3568999999999 334566665 1 236899999988766665543 222
Q ss_pred eeEEEEEeeccceeccccC-CCCcEEEEeeccccccccchhhhHHHHHH-hHccCCcEEEEEee
Q 041748 266 LVFEFQGLIRGSRLVNIRK-KKHETVAANLVFHLNTLKIYLKISDTLNL-VRSIKPTIVTLVEQ 327 (479)
Q Consensus 266 vpFeF~~v~~~~~l~~L~~-~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~-Ir~L~P~VvtlvE~ 327 (479)
+. |.. .+. ..+.. .+=+.++.| ..||++.+. ..+|.. .+.|+|.-.+++..
T Consensus 78 ~~--~~~--~d~--~~~~~~~~fD~v~~~--~~l~~~~d~---~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 78 CQ--FVE--ADI--ASWQPPQALDLIFAN--ASLQWLPDH---LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred Ce--EEE--Cch--hccCCCCCccEEEEc--cChhhCCCH---HHHHHHHHHhcCCCcEEEEEC
Confidence 33 321 111 11111 122344444 457888653 244444 46789998877753
No 41
>PLN02244 tocopherol O-methyltransferase
Probab=62.24 E-value=54 Score=34.04 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=56.7
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCe--eEEEEEeeccceecc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNL--VFEFQGLIRGSRLVN 281 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnv--pFeF~~v~~~~~l~~ 281 (479)
.-+|+|+|.|.|. +...|+.+ . + .++|||+.+...++.+.++. +..| + ..+|. ..+. ..
T Consensus 119 ~~~VLDiGCG~G~----~~~~La~~--~-g---~~v~gvD~s~~~i~~a~~~~----~~~g-~~~~v~~~--~~D~--~~ 179 (340)
T PLN02244 119 PKRIVDVGCGIGG----SSRYLARK--Y-G---ANVKGITLSPVQAARANALA----AAQG-LSDKVSFQ--VADA--LN 179 (340)
T ss_pred CCeEEEecCCCCH----HHHHHHHh--c-C---CEEEEEECCHHHHHHHHHHH----HhcC-CCCceEEE--EcCc--cc
Confidence 4579999999994 45567765 2 2 48999998877665554432 2223 3 24443 2222 12
Q ss_pred ccCCCCcEEEEeeccccccccchhhhHHHHH-HhHccCCcEEEEE
Q 041748 282 IRKKKHETVAANLVFHLNTLKIYLKISDTLN-LVRSIKPTIVTLV 325 (479)
Q Consensus 282 L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~-~Ir~L~P~Vvtlv 325 (479)
+...++..=+|-+...+||+.+. ..+|+ ..|-|+|.-.+++
T Consensus 180 ~~~~~~~FD~V~s~~~~~h~~d~---~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 180 QPFEDGQFDLVWSMESGEHMPDK---RKFVQELARVAAPGGRIII 221 (340)
T ss_pred CCCCCCCccEEEECCchhccCCH---HHHHHHHHHHcCCCcEEEE
Confidence 22333333344455568888753 34554 4477899654433
No 42
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=61.37 E-value=58 Score=31.05 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=58.3
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccc-eeccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGS-RLVNI 282 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~-~l~~L 282 (479)
.-.|+|+|.|.|.-. ..|+.+ .|.-++|||+.+.+.++.+.+++... .++| ++| +..+. +....
T Consensus 41 ~~~VLDiGcGtG~~~----~~la~~-----~p~~~v~gVD~s~~~i~~a~~~~~~~--~~~~--v~~--~~~d~~~~l~~ 105 (202)
T PRK00121 41 APIHLEIGFGKGEFL----VEMAKA-----NPDINFIGIEVHEPGVGKALKKIEEE--GLTN--LRL--LCGDAVEVLLD 105 (202)
T ss_pred CCeEEEEccCCCHHH----HHHHHH-----CCCccEEEEEechHHHHHHHHHHHHc--CCCC--EEE--EecCHHHHHHH
Confidence 457999999999543 334544 12458999999988888777666543 1233 333 22322 11110
Q ss_pred cCCCC--cEEEEeeccccccccch---hhhHHHHHHh-HccCCcEEEEE
Q 041748 283 RKKKH--ETVAANLVFHLNTLKIY---LKISDTLNLV-RSIKPTIVTLV 325 (479)
Q Consensus 283 ~~~~~--EaLaVN~~~~Lh~L~~~---~~~~~~L~~I-r~L~P~Vvtlv 325 (479)
.+.++ +.+++|.....+..... .....+|+.+ +-|+|.-+++.
T Consensus 106 ~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 106 MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 12222 45666654332211111 1235677766 58999766554
No 43
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=59.61 E-value=1.3e+02 Score=28.93 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=60.6
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCee-EEEEEeeccc-eeccc
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLV-FEFQGLIRGS-RLVNI 282 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvp-FeF~~v~~~~-~l~~L 282 (479)
-.|+|++.|.| .--|.+|+.. . -+||+|+.+.+.++.+.+.+... + +. .+| +..+. +....
T Consensus 55 ~~vLDl~~GsG---~l~l~~lsr~-----a--~~V~~vE~~~~a~~~a~~Nl~~~----~-~~~v~~--~~~D~~~~l~~ 117 (199)
T PRK10909 55 ARCLDCFAGSG---ALGLEALSRY-----A--AGATLLEMDRAVAQQLIKNLATL----K-AGNARV--VNTNALSFLAQ 117 (199)
T ss_pred CEEEEcCCCcc---HHHHHHHHcC-----C--CEEEEEECCHHHHHHHHHHHHHh----C-CCcEEE--EEchHHHHHhh
Confidence 47999999998 2223445532 1 37999998877777666554443 3 32 222 22222 11100
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHHHhHc---cCCcEEEEEeecCCCC
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLVRS---IKPTIVTLVEQEGSRS 332 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~---L~P~VvtlvE~ea~~n 332 (479)
...+=+.|++|=+|+- .....++..|.. +.|+-++++|.....+
T Consensus 118 ~~~~fDlV~~DPPy~~------g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 118 PGTPHNVVFVDPPFRK------GLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred cCCCceEEEECCCCCC------ChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 1112367888877531 223456666665 7999999999766543
No 44
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=59.11 E-value=23 Score=29.82 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=32.2
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHH
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSF 259 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~f 259 (479)
=+|+|+|.|.|. +...|+.+ .| ..++|+|+.+...++.+.+++..+
T Consensus 21 ~~vldlG~G~G~----~~~~l~~~----~~-~~~v~~vD~s~~~~~~a~~~~~~~ 66 (124)
T TIGR02469 21 DVLWDIGAGSGS----ITIEAARL----VP-NGRVYAIERNPEALRLIERNARRF 66 (124)
T ss_pred CEEEEeCCCCCH----HHHHHHHH----CC-CceEEEEcCCHHHHHHHHHHHHHh
Confidence 389999999983 24445554 12 378999999887777776655443
No 45
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=58.74 E-value=23 Score=31.79 Aligned_cols=51 Identities=18% Similarity=0.353 Sum_probs=32.4
Q ss_pred CceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHH
Q 041748 202 NRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLV 257 (479)
Q Consensus 202 ~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~ 257 (479)
.+..+|||||-|.|. |=+.|+..= +...|.++|++|+.+....+...++..
T Consensus 24 ~~~~~vvD~GsG~Gy----Ls~~La~~l-~~~~~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 24 KRCITVVDLGSGKGY----LSRALAHLL-CNSSPNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred CCCCEEEEeCCChhH----HHHHHHHHH-HhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence 368999999999994 344444410 001257999999987665544444433
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=58.60 E-value=1.3e+02 Score=28.56 Aligned_cols=95 Identities=19% Similarity=0.198 Sum_probs=55.9
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCee-EEEEEeeccc-eeccc
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLV-FEFQGLIRGS-RLVNI 282 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvp-FeF~~v~~~~-~l~~L 282 (479)
-.|+|+|.|.|. .+ -.++.+ .|..++|+|+.+.+.++.+.+++.+ .+ ++ ++|. ..+. +.. .
T Consensus 47 ~~VLDiGcGtG~--~a--l~la~~-----~~~~~V~giD~s~~~l~~A~~~~~~----~~-l~~i~~~--~~d~~~~~-~ 109 (187)
T PRK00107 47 ERVLDVGSGAGF--PG--IPLAIA-----RPELKVTLVDSLGKKIAFLREVAAE----LG-LKNVTVV--HGRAEEFG-Q 109 (187)
T ss_pred CeEEEEcCCCCH--HH--HHHHHH-----CCCCeEEEEeCcHHHHHHHHHHHHH----cC-CCCEEEE--eccHhhCC-C
Confidence 579999999992 22 223333 1246899999988877777655444 33 43 4443 2222 211 1
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
..+-+.++.|+. ...+.+++.+ +.|+|.-.+++.
T Consensus 110 -~~~fDlV~~~~~---------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 110 -EEKFDVVTSRAV---------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred -CCCccEEEEccc---------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 223456666642 1345666654 789999887776
No 47
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=57.34 E-value=84 Score=31.03 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=53.7
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCe-eEEEEEeeccceeccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNL-VFEFQGLIRGSRLVNI 282 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnv-pFeF~~v~~~~~l~~L 282 (479)
.=+|+|+|.|.|. |.. .++.. . + +.-+||+|+.+...++.+.++... .+ + ..+|. ..+ +..+
T Consensus 78 g~~VLDiG~G~G~-~~~---~~a~~--~-g-~~~~v~gvD~s~~~l~~A~~~~~~----~g-~~~v~~~--~~d--~~~l 140 (272)
T PRK11873 78 GETVLDLGSGGGF-DCF---LAARR--V-G-PTGKVIGVDMTPEMLAKARANARK----AG-YTNVEFR--LGE--IEAL 140 (272)
T ss_pred CCEEEEeCCCCCH-HHH---HHHHH--h-C-CCCEEEEECCCHHHHHHHHHHHHH----cC-CCCEEEE--Ecc--hhhC
Confidence 4589999999883 221 22322 1 1 345899999988777776665432 33 2 12222 121 2222
Q ss_pred cCCCC--cEEEEeeccccccccchhhhHHHH-HHhHccCCcEEEEE
Q 041748 283 RKKKH--ETVAANLVFHLNTLKIYLKISDTL-NLVRSIKPTIVTLV 325 (479)
Q Consensus 283 ~~~~~--EaLaVN~~~~Lh~L~~~~~~~~~L-~~Ir~L~P~Vvtlv 325 (479)
.+.++ +.|+.|++ +|+..+. ..+| ...+-|+|.-.+++
T Consensus 141 ~~~~~~fD~Vi~~~v--~~~~~d~---~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 141 PVADNSVDVIISNCV--INLSPDK---ERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred CCCCCceeEEEEcCc--ccCCCCH---HHHHHHHHHHcCCCcEEEE
Confidence 23233 45666776 4565543 2333 34467888865544
No 48
>PRK06922 hypothetical protein; Provisional
Probab=55.22 E-value=80 Score=36.30 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=59.3
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceecccc-
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIR- 283 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~- 283 (479)
-.|+|+|.|.| .+...|+.+. |..++|||+.+...++.+.+++. ..+ .++++ +..+. .++.
T Consensus 420 ~rVLDIGCGTG----~ls~~LA~~~-----P~~kVtGIDIS~~MLe~Ararl~----~~g-~~ie~--I~gDa--~dLp~ 481 (677)
T PRK06922 420 DTIVDVGAGGG----VMLDMIEEET-----EDKRIYGIDISENVIDTLKKKKQ----NEG-RSWNV--IKGDA--INLSS 481 (677)
T ss_pred CEEEEeCCCCC----HHHHHHHHhC-----CCCEEEEEECCHHHHHHHHHHhh----hcC-CCeEE--EEcch--HhCcc
Confidence 57999999999 3455677651 35799999999888877766542 223 44444 22222 1122
Q ss_pred -CCCCcEEEEeeccccccccc----------hhhhHHHHHHh-HccCCcEEEEE
Q 041748 284 -KKKHETVAANLVFHLNTLKI----------YLKISDTLNLV-RSIKPTIVTLV 325 (479)
Q Consensus 284 -~~~~EaLaVN~~~~Lh~L~~----------~~~~~~~L~~I-r~L~P~Vvtlv 325 (479)
..++.+=+|-+.+.+|++.+ ......+|+.+ +.|+|.-.++.
T Consensus 482 ~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 482 SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 33443333334444676532 11234566554 78999755444
No 49
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=54.75 E-value=71 Score=30.09 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCC
Q 041748 186 ANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRN 265 (479)
Q Consensus 186 ANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgn 265 (479)
..+.+++.+.... ..+..+|+|+|.|.|. +...|+.+ + |..++|+++.+...++.+..++. .+
T Consensus 19 ~~~~l~~~~~~~~--~~~~~~vLDlG~G~G~----~~~~l~~~---~--~~~~~~~~D~~~~~~~~~~~~~~------~~ 81 (240)
T TIGR02072 19 MAKRLLALLKEKG--IFIPASVLDIGCGTGY----LTRALLKR---F--PQAEFIALDISAGMLAQAKTKLS------EN 81 (240)
T ss_pred HHHHHHHHhhhhc--cCCCCeEEEECCCccH----HHHHHHHh---C--CCCcEEEEeChHHHHHHHHHhcC------CC
Confidence 3444555555320 0234689999999994 34455554 1 35679999988776666655443 12
Q ss_pred eeEEEEEeeccceeccccCCCC--cEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 266 LVFEFQGLIRGSRLVNIRKKKH--ETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 266 vpFeF~~v~~~~~l~~L~~~~~--EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
+.| +..+. ..+...++ ++|+.+ ..|||+.+. ..+|..+ +.|+|.-+++..
T Consensus 82 ~~~----~~~d~--~~~~~~~~~fD~vi~~--~~l~~~~~~---~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 82 VQF----ICGDA--EKLPLEDSSFDLIVSN--LALQWCDDL---SQALSELARVLKPGGLLAFS 134 (240)
T ss_pred CeE----Eecch--hhCCCCCCceeEEEEh--hhhhhccCH---HHHHHHHHHHcCCCcEEEEE
Confidence 332 22222 11111222 344433 447777543 3566555 568898776665
No 50
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=52.92 E-value=1.8e+02 Score=27.60 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=53.9
Q ss_pred ceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccc
Q 041748 203 RALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNI 282 (479)
Q Consensus 203 ~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L 282 (479)
+...|+|+|.|.|. +...|+.+ + .++||++.+...++.+.+++...... + ...|.. .+.+ ..
T Consensus 63 ~~~~vLDvGcG~G~----~~~~l~~~---~----~~v~~~D~s~~~i~~a~~~~~~~~~~-~--~i~~~~--~d~~--~~ 124 (230)
T PRK07580 63 TGLRILDAGCGVGS----LSIPLARR---G----AKVVASDISPQMVEEARERAPEAGLA-G--NITFEV--GDLE--SL 124 (230)
T ss_pred CCCEEEEEeCCCCH----HHHHHHHc---C----CEEEEEECCHHHHHHHHHHHHhcCCc-c--CcEEEE--cCch--hc
Confidence 35689999999994 33455554 2 24999999888888777665432111 1 233432 1111 11
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHHHhHccCCcEEEEE
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLV 325 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~Vvtlv 325 (479)
. ..=+.++.+. .+||+.+. ....+++.+.++.+..+++.
T Consensus 125 ~-~~fD~v~~~~--~l~~~~~~-~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 125 L-GRFDTVVCLD--VLIHYPQE-DAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred c-CCcCEEEEcc--hhhcCCHH-HHHHHHHHHHhhcCCeEEEE
Confidence 1 1123444333 35676543 35566666665444434343
No 51
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=52.72 E-value=75 Score=30.21 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=55.0
Q ss_pred EEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccccCC
Q 041748 206 HVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKK 285 (479)
Q Consensus 206 HIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~~ 285 (479)
+|+|+|.|.|. +...++.+ . |..++||++.+.+.++.+.+++.+ .| +.-..+.+..+.....+. .
T Consensus 2 ~vLDiGcG~G~----~~~~la~~--~---~~~~v~gid~s~~~~~~a~~~~~~----~g-l~~~i~~~~~d~~~~~~~-~ 66 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAER--H---PHLQLHGYTISPEQAEVGRERIRA----LG-LQGRIRIFYRDSAKDPFP-D 66 (224)
T ss_pred eEEEECCCCCH----HHHHHHHH--C---CCCEEEEEECCHHHHHHHHHHHHh----cC-CCcceEEEecccccCCCC-C
Confidence 68999998884 34456665 1 246899999887777766665532 23 332222222222100111 1
Q ss_pred CCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEE
Q 041748 286 KHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLV 325 (479)
Q Consensus 286 ~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~Vvtlv 325 (479)
.=+.|+ +...+||+.+ ...+|+.+ +.|+|.-.+++
T Consensus 67 ~fD~I~--~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 67 TYDLVF--GFEVIHHIKD---KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CCCEee--hHHHHHhCCC---HHHHHHHHHHHcCCCCEEEE
Confidence 123333 3334677754 34666666 56899866554
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=52.09 E-value=1.9e+02 Score=26.55 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=31.7
Q ss_pred EEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHH
Q 041748 206 HVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLV 257 (479)
Q Consensus 206 HIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~ 257 (479)
.|+|+|.|.|. +...++.+ ++ ++|+|+.+.+.++.+.+++.
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~----~~---~v~~vD~s~~~~~~a~~~~~ 62 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK----GK---CILTTDINPFAVKELRENAK 62 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc----CC---EEEEEECCHHHHHHHHHHHH
Confidence 49999999993 45566665 22 89999999888888877764
No 53
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=52.05 E-value=1.2e+02 Score=29.24 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=54.9
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceecccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIR 283 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~ 283 (479)
.-+|||+|-|.| .+..+|+.+. |.||+|..+.+. .++.+.+ +. .|.|.-.-+. ..+.
T Consensus 101 ~~~vvDvGGG~G----~~~~~l~~~~-----P~l~~~v~Dlp~-v~~~~~~-----~~---rv~~~~gd~f-----~~~P 157 (241)
T PF00891_consen 101 FKTVVDVGGGSG----HFAIALARAY-----PNLRATVFDLPE-VIEQAKE-----AD---RVEFVPGDFF-----DPLP 157 (241)
T ss_dssp SSEEEEET-TTS----HHHHHHHHHS-----TTSEEEEEE-HH-HHCCHHH-----TT---TEEEEES-TT-----TCCS
T ss_pred ccEEEeccCcch----HHHHHHHHHC-----CCCcceeeccHh-hhhcccc-----cc---ccccccccHH-----hhhc
Confidence 458999999999 4456666662 578999998643 2222222 22 1333222111 1122
Q ss_pred CCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCc---EEEEEeecCCC
Q 041748 284 KKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPT---IVTLVEQEGSR 331 (479)
Q Consensus 284 ~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~---VvtlvE~ea~~ 331 (479)
. .+++.+.-+ ||..+++. ...+|+.+ ++|+|. .++|+|.-.+.
T Consensus 158 ~--~D~~~l~~v--Lh~~~d~~-~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 158 V--ADVYLLRHV--LHDWSDED-CVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp S--ESEEEEESS--GGGS-HHH-HHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred c--ccceeeehh--hhhcchHH-HHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 2 345544444 78888764 44566655 679986 77788865443
No 54
>PRK08317 hypothetical protein; Provisional
Probab=51.03 E-value=2.1e+02 Score=26.69 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=54.8
Q ss_pred ceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccc
Q 041748 203 RALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNI 282 (479)
Q Consensus 203 ~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L 282 (479)
+.-+|+|+|.|.|. | ...++.+ . +|.-++|||+.+...++.+.++.. . .+ ...+|.. .+.....+
T Consensus 19 ~~~~vLdiG~G~G~-~---~~~~a~~--~--~~~~~v~~~d~~~~~~~~a~~~~~---~-~~-~~~~~~~--~d~~~~~~ 83 (241)
T PRK08317 19 PGDRVLDVGCGPGN-D---ARELARR--V--GPEGRVVGIDRSEAMLALAKERAA---G-LG-PNVEFVR--GDADGLPF 83 (241)
T ss_pred CCCEEEEeCCCCCH-H---HHHHHHh--c--CCCcEEEEEeCCHHHHHHHHHHhh---C-CC-CceEEEe--cccccCCC
Confidence 35689999999883 3 4445554 1 235689999998877776665511 1 12 2333332 11111111
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHH-HhHccCCcEEEEEe
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLN-LVRSIKPTIVTLVE 326 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~-~Ir~L~P~VvtlvE 326 (479)
.-..-+.|+.+ ..++|+.+. ..+|+ ..+.|+|.-.++..
T Consensus 84 ~~~~~D~v~~~--~~~~~~~~~---~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 84 PDGSFDAVRSD--RVLQHLEDP---ARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred CCCCceEEEEe--chhhccCCH---HHHHHHHHHHhcCCcEEEEE
Confidence 11122334333 346777653 23443 33568888765554
No 55
>PRK04457 spermidine synthase; Provisional
Probab=50.58 E-value=1.8e+02 Score=29.17 Aligned_cols=107 Identities=10% Similarity=0.087 Sum_probs=57.5
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccc-eecccc
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGS-RLVNIR 283 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~-~l~~L~ 283 (479)
-+|+|+|.|.|. +...|+.+ .|..+||+|+-+.+.++.+.+.+ .. -+ ..=.++.+..+. +...-.
T Consensus 68 ~~vL~IG~G~G~----l~~~l~~~-----~p~~~v~~VEidp~vi~~A~~~f---~~-~~-~~~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 68 QHILQIGLGGGS----LAKFIYTY-----LPDTRQTAVEINPQVIAVARNHF---EL-PE-NGERFEVIEADGAEYIAVH 133 (262)
T ss_pred CEEEEECCCHhH----HHHHHHHh-----CCCCeEEEEECCHHHHHHHHHHc---CC-CC-CCCceEEEECCHHHHHHhC
Confidence 368999999883 55566665 24689999998877666555432 11 11 100223233332 111101
Q ss_pred CCCCcEEEEeeccccccccchhhhHHHHHHhH-ccCCcEEEEEe
Q 041748 284 KKKHETVAANLVFHLNTLKIYLKISDTLNLVR-SIKPTIVTLVE 326 (479)
Q Consensus 284 ~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir-~L~P~VvtlvE 326 (479)
...-++|+++. |.-...+......+++..++ .|+|.-++++-
T Consensus 134 ~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 134 RHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 12346888875 22112221112246777664 59999988774
No 56
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=49.97 E-value=54 Score=32.87 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=47.8
Q ss_pred HhcCCCccchh-hhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHH
Q 041748 173 YRVSPYFQLAH-FTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQE 251 (479)
Q Consensus 173 ~e~sP~~kfah-~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~e 251 (479)
+...|--++++ |..|+.|++.+-..-. ..+.-+|+|+|.|.| .+...|+.+ + + ++|||+.+.+.++.
T Consensus 12 ~~~~~~k~~gq~fl~~~~i~~~i~~~l~-~~~~~~VLEiG~G~G----~lt~~L~~~---~-~---~v~avE~d~~~~~~ 79 (272)
T PRK00274 12 YGHRAKKSLGQNFLIDENILDKIVDAAG-PQPGDNVLEIGPGLG----ALTEPLLER---A-A---KVTAVEIDRDLAPI 79 (272)
T ss_pred cCCCCCcccCcCcCCCHHHHHHHHHhcC-CCCcCeEEEeCCCcc----HHHHHHHHh---C-C---cEEEEECCHHHHHH
Confidence 34566667776 7777777766554210 023468999999998 466677776 2 2 78999988776666
Q ss_pred HHHHH
Q 041748 252 TENRL 256 (479)
Q Consensus 252 tg~rL 256 (479)
+.+++
T Consensus 80 ~~~~~ 84 (272)
T PRK00274 80 LAETF 84 (272)
T ss_pred HHHhh
Confidence 65443
No 57
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=48.02 E-value=1.2e+02 Score=28.36 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=26.5
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHH
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQET 252 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~et 252 (479)
-+|+|+|.|.|. ++..|+.+ . + .+++||+.+.+.++.+
T Consensus 15 ~~iLDiGcG~G~----~~~~l~~~--~-~---~~~~giD~s~~~i~~a 52 (194)
T TIGR02081 15 SRVLDLGCGDGE----LLALLRDE--K-Q---VRGYGIEIDQDGVLAC 52 (194)
T ss_pred CEEEEeCCCCCH----HHHHHHhc--c-C---CcEEEEeCCHHHHHHH
Confidence 479999999994 56677655 1 1 3569998876655543
No 58
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=47.88 E-value=22 Score=35.56 Aligned_cols=106 Identities=22% Similarity=0.197 Sum_probs=65.4
Q ss_pred ceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccc
Q 041748 203 RALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNI 282 (479)
Q Consensus 203 ~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L 282 (479)
.--.|+|+|.|-|-+ -+-|+.| =|-=.||||+++.+.++++. +.++|+.|+---+ ..|+.
T Consensus 30 ~~~~v~DLGCGpGns----TelL~~R-----wP~A~i~GiDsS~~Mla~Aa-------~rlp~~~f~~aDl-~~w~p--- 89 (257)
T COG4106 30 RPRRVVDLGCGPGNS----TELLARR-----WPDAVITGIDSSPAMLAKAA-------QRLPDATFEEADL-RTWKP--- 89 (257)
T ss_pred ccceeeecCCCCCHH----HHHHHHh-----CCCCeEeeccCCHHHHHHHH-------HhCCCCceecccH-hhcCC---
Confidence 356799999999954 4567777 23467999999988776654 4555444443222 12211
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHHHhHccCCcEEEEEeecCCCCC
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQEGSRSP 333 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~VvtlvE~ea~~ns 333 (479)
-.+-..|.-|.+| |-|+|.+ +-+-+.+-.|.|.-+.-|-.-.|+..
T Consensus 90 -~~~~dllfaNAvl--qWlpdH~--~ll~rL~~~L~Pgg~LAVQmPdN~de 135 (257)
T COG4106 90 -EQPTDLLFANAVL--QWLPDHP--ELLPRLVSQLAPGGVLAVQMPDNLDE 135 (257)
T ss_pred -CCccchhhhhhhh--hhccccH--HHHHHHHHhhCCCceEEEECCCccCc
Confidence 1234567778885 4577764 24456677889988866654444433
No 59
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=47.80 E-value=1.2e+02 Score=31.29 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=50.9
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccccC
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRK 284 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~ 284 (479)
-+|+|+|.|.|. ++..++.+ ++- +++||+.+...+.+.. ...+++..- .+.+|... + +..+..
T Consensus 124 ~~VLDIGCG~G~----~~~~la~~----g~~--~V~GiD~S~~~l~q~~-a~~~~~~~~--~~i~~~~~--d--~e~lp~ 186 (322)
T PRK15068 124 RTVLDVGCGNGY----HMWRMLGA----GAK--LVVGIDPSQLFLCQFE-AVRKLLGND--QRAHLLPL--G--IEQLPA 186 (322)
T ss_pred CEEEEeccCCcH----HHHHHHHc----CCC--EEEEEcCCHHHHHHHH-HHHHhcCCC--CCeEEEeC--C--HHHCCC
Confidence 479999999993 23345554 222 4999998775543221 112222211 12333322 1 112222
Q ss_pred -CCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 285 -KKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 285 -~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
..=++|+ |+..|||..+. ..+|..+ +.|+|.-.++.+
T Consensus 187 ~~~FD~V~--s~~vl~H~~dp---~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 187 LKAFDTVF--SMGVLYHRRSP---LDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred cCCcCEEE--ECChhhccCCH---HHHHHHHHHhcCCCcEEEEE
Confidence 1113443 33447887643 2445444 678998776665
No 60
>PRK00811 spermidine synthase; Provisional
Probab=47.11 E-value=2.2e+02 Score=28.78 Aligned_cols=109 Identities=10% Similarity=0.033 Sum_probs=58.8
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhc-CCeeEEEEEeeccc-eeccc
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSF-RNLVFEFQGLIRGS-RLVNI 282 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~l-gnvpFeF~~v~~~~-~l~~L 282 (479)
-+|+|+|.|.|. +...+..+ |+.-+||+|+-+...++...+.+..+.... .+-.+++ +..+. ....-
T Consensus 78 ~~VL~iG~G~G~----~~~~~l~~-----~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v--~~~Da~~~l~~ 146 (283)
T PRK00811 78 KRVLIIGGGDGG----TLREVLKH-----PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVEL--VIGDGIKFVAE 146 (283)
T ss_pred CEEEEEecCchH----HHHHHHcC-----CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEE--EECchHHHHhh
Confidence 368999988883 23334443 224589999988888887777766654422 1112232 33322 11000
Q ss_pred cCCCCcEEEEeeccccccccc-hhhhHHHHHHh-HccCCcEEEEEe
Q 041748 283 RKKKHETVAANLVFHLNTLKI-YLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~-~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
.-..=+++++++.-. .-.. ..--.+|++.+ +.|+|.-++++-
T Consensus 147 ~~~~yDvIi~D~~dp--~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 147 TENSFDVIIVDSTDP--VGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CCCcccEEEECCCCC--CCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 112236777765421 1111 11124666554 689999987764
No 61
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=46.82 E-value=57 Score=32.83 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=65.0
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceecccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIR 283 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~ 283 (479)
..-|+|+|.|-| .|-+.||.. | ..+|||+.+...++.+. ..|.+-| +..+|...... ++....
T Consensus 60 g~~vLDvGCGgG----~Lse~mAr~---G----a~VtgiD~se~~I~~Ak----~ha~e~g-v~i~y~~~~~e-dl~~~~ 122 (243)
T COG2227 60 GLRVLDVGCGGG----ILSEPLARL---G----ASVTGIDASEKPIEVAK----LHALESG-VNIDYRQATVE-DLASAG 122 (243)
T ss_pred CCeEEEecCCcc----HhhHHHHHC---C----CeeEEecCChHHHHHHH----Hhhhhcc-ccccchhhhHH-HHHhcC
Confidence 478999999999 788888887 3 88999998776665554 3455555 77666544321 222111
Q ss_pred CCCCcEEEEeeccccccccchhhhHHHHH-HhHccCCcEEEEE
Q 041748 284 KKKHETVAANLVFHLNTLKIYLKISDTLN-LVRSIKPTIVTLV 325 (479)
Q Consensus 284 ~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~-~Ir~L~P~Vvtlv 325 (479)
+-.=||-|+=-|+|++++. .|++ ..+-++|.-+++.
T Consensus 123 ---~~FDvV~cmEVlEHv~dp~---~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 123 ---GQFDVVTCMEVLEHVPDPE---SFLRACAKLVKPGGILFL 159 (243)
T ss_pred ---CCccEEEEhhHHHccCCHH---HHHHHHHHHcCCCcEEEE
Confidence 3344667777799998753 3554 4466889776655
No 62
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=44.29 E-value=1.2e+02 Score=31.90 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=55.7
Q ss_pred ceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccc
Q 041748 203 RALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNI 282 (479)
Q Consensus 203 ~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L 282 (479)
...+|+|+|.|.|.- ...|+.+ -+ ..++|+++.+.+.++.+.++.. ..|+.| +..+. ..+
T Consensus 113 ~~~~VLDLGcGtG~~----~l~La~~--~~---~~~VtgVD~S~~mL~~A~~k~~-----~~~i~~----i~gD~--e~l 172 (340)
T PLN02490 113 RNLKVVDVGGGTGFT----TLGIVKH--VD---AKNVTILDQSPHQLAKAKQKEP-----LKECKI----IEGDA--EDL 172 (340)
T ss_pred CCCEEEEEecCCcHH----HHHHHHH--CC---CCEEEEEECCHHHHHHHHHhhh-----ccCCeE----EeccH--HhC
Confidence 357999999999952 3344544 11 1579999988777776665421 122433 22222 222
Q ss_pred cCCC--CcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEE
Q 041748 283 RKKK--HETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLV 325 (479)
Q Consensus 283 ~~~~--~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~Vvtlv 325 (479)
.... =+.++.|.. ||++.+. ..+|+.+ +.|+|.-.+++
T Consensus 173 p~~~~sFDvVIs~~~--L~~~~d~---~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 173 PFPTDYADRYVSAGS--IEYWPDP---QRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred CCCCCceeEEEEcCh--hhhCCCH---HHHHHHHHHhcCCCcEEEE
Confidence 2222 245555544 6777653 3455544 67899866544
No 63
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=43.01 E-value=1.8e+02 Score=26.66 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=54.3
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccccC
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRK 284 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~ 284 (479)
=+|+|+|.|.|. |...|+.+ + -++|+|+.+...++.+.+++.. .+|+ ++ +..+.....+.-
T Consensus 15 ~~vLEiG~G~G~----lt~~l~~~---~----~~v~~vE~~~~~~~~~~~~~~~----~~~v--~i--i~~D~~~~~~~~ 75 (169)
T smart00650 15 DTVLEIGPGKGA----LTEELLER---A----ARVTAIEIDPRLAPRLREKFAA----ADNL--TV--IHGDALKFDLPK 75 (169)
T ss_pred CEEEEECCCccH----HHHHHHhc---C----CeEEEEECCHHHHHHHHHHhcc----CCCE--EE--EECchhcCCccc
Confidence 489999999984 55666665 1 3799999887777766655532 2223 32 233221111111
Q ss_pred CCCcEEEEeeccccccccchhhhHHHHHHhHccCCcEEEEEeec
Q 041748 285 KKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQE 328 (479)
Q Consensus 285 ~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~VvtlvE~e 328 (479)
..-..++-|..+++ . ..-+..++.... +.+..+++++.|
T Consensus 76 ~~~d~vi~n~Py~~---~-~~~i~~~l~~~~-~~~~~~l~~q~e 114 (169)
T smart00650 76 LQPYKVVGNLPYNI---S-TPILFKLLEEPP-AFRDAVLMVQKE 114 (169)
T ss_pred cCCCEEEECCCccc---H-HHHHHHHHhcCC-CcceEEEEEEHH
Confidence 11246666766542 1 112333443222 447777788776
No 64
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=40.65 E-value=2.2e+02 Score=27.10 Aligned_cols=96 Identities=13% Similarity=0.159 Sum_probs=52.6
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCee--EEEEEeeccc-eec
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLV--FEFQGLIRGS-RLV 280 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvp--FeF~~v~~~~-~l~ 280 (479)
.-+|+|+|.|.|..=..|.+.+ .. .-++++|+.+.+.++.+.+++.+ .+ +. .+|. ..+. +..
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~-~~-------~g~V~~iD~~~~~~~~a~~~l~~----~~-~~~~v~~~--~~d~~~~~ 137 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAI-ER-------RGKVYTVEIVKELAIYAAQNIER----LG-YWGVVEVY--HGDGKRGL 137 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhc-CC-------CCEEEEEeCCHHHHHHHHHHHHH----cC-CCCcEEEE--ECCcccCC
Confidence 4579999999996433332222 11 12799999988878777777753 33 32 3332 2222 111
Q ss_pred cccCCCCcEEEEeeccccccccchhhhHHHHHHhHccCCcEEEEE
Q 041748 281 NIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLV 325 (479)
Q Consensus 281 ~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~Vvtlv 325 (479)
....+=++++++.. ++++++ . ..+.|+|.-.++.
T Consensus 138 -~~~~~fD~Ii~~~~--~~~~~~-----~---l~~~L~~gG~lvi 171 (205)
T PRK13944 138 -EKHAPFDAIIVTAA--ASTIPS-----A---LVRQLKDGGVLVI 171 (205)
T ss_pred -ccCCCccEEEEccC--cchhhH-----H---HHHhcCcCcEEEE
Confidence 11234467777776 345542 2 3456777554433
No 65
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=40.49 E-value=2.1e+02 Score=29.66 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=52.5
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccccC
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRK 284 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~ 284 (479)
=+|+|+|.|.|. ++..++.+ ++ -++|||+++...+.+. +...+++..-+ ...+... . +..+..
T Consensus 123 ~~VLDvGCG~G~----~~~~~~~~----g~--~~v~GiDpS~~ml~q~-~~~~~~~~~~~--~v~~~~~--~--ie~lp~ 185 (314)
T TIGR00452 123 RTILDVGCGSGY----HMWRMLGH----GA--KSLVGIDPTVLFLCQF-EAVRKLLDNDK--RAILEPL--G--IEQLHE 185 (314)
T ss_pred CEEEEeccCCcH----HHHHHHHc----CC--CEEEEEcCCHHHHHHH-HHHHHHhccCC--CeEEEEC--C--HHHCCC
Confidence 489999999995 34455544 22 2689999887655442 22223332212 2222221 1 111111
Q ss_pred -CCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 285 -KKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 285 -~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
..=++|+.+. .|+|+.+. ..+|+.+ +.|+|.-.++.+
T Consensus 186 ~~~FD~V~s~g--vL~H~~dp---~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 186 LYAFDTVFSMG--VLYHRKSP---LEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CCCcCEEEEcc--hhhccCCH---HHHHHHHHHhcCCCCEEEEE
Confidence 1223444443 46787543 3455555 569998766655
No 66
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=38.26 E-value=3.4e+02 Score=27.03 Aligned_cols=109 Identities=10% Similarity=0.134 Sum_probs=59.2
Q ss_pred EEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccc-eeccccC
Q 041748 206 HVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGS-RLVNIRK 284 (479)
Q Consensus 206 HIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~-~l~~L~~ 284 (479)
+|+|+|.|.|. +...+..+ + +.-++|+|+.+.+.++...+.+......+.+-.+++. ..+. +...-.-
T Consensus 75 ~VL~iG~G~G~----~~~~ll~~--~---~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~--~~D~~~~l~~~~ 143 (270)
T TIGR00417 75 HVLVIGGGDGG----VLREVLKH--K---SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQ--IDDGFKFLADTE 143 (270)
T ss_pred EEEEEcCCchH----HHHHHHhC--C---CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEE--ECchHHHHHhCC
Confidence 89999999885 34445444 1 2457999998877777777766555432321123332 2222 1100001
Q ss_pred CCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 285 KKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 285 ~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
.+=++|+++.....+. ....-..++++.+ +.|+|.-++++.
T Consensus 144 ~~yDvIi~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 144 NTFDVIIVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCccEEEEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 2335777776532211 1011124666655 579999887775
No 67
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=37.74 E-value=97 Score=28.57 Aligned_cols=118 Identities=13% Similarity=0.155 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcC
Q 041748 185 TANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFR 264 (479)
Q Consensus 185 tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lg 264 (479)
.+-..+++.+... +.=+|+|+|.|.|. +=-.|+.+ -|..++|+++.+...++-+.+.+. ..+
T Consensus 18 ~~t~lL~~~l~~~-----~~~~vLDlG~G~G~----i~~~la~~-----~~~~~v~~vDi~~~a~~~a~~n~~----~n~ 79 (170)
T PF05175_consen 18 AGTRLLLDNLPKH-----KGGRVLDLGCGSGV----ISLALAKR-----GPDAKVTAVDINPDALELAKRNAE----RNG 79 (170)
T ss_dssp HHHHHHHHHHHHH-----TTCEEEEETSTTSH----HHHHHHHT-----STCEEEEEEESBHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHhhc-----cCCeEEEecCChHH----HHHHHHHh-----CCCCEEEEEcCCHHHHHHHHHHHH----hcC
Confidence 3556788888763 45679999999993 22233443 246889999998887777766543 333
Q ss_pred CeeEEEEEeeccceeccccCCCCcEEEEeeccccccccch--hhhHHHH-HHhHccCCcEEEEE
Q 041748 265 NLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIY--LKISDTL-NLVRSIKPTIVTLV 325 (479)
Q Consensus 265 nvpFeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~--~~~~~~L-~~Ir~L~P~Vvtlv 325 (479)
+.- .+.+..+. ...+...+=+.++.|=++ |.-.++ .....++ ..-+-|+|.-..+.
T Consensus 80 -~~~-v~~~~~d~-~~~~~~~~fD~Iv~NPP~--~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 80 -LEN-VEVVQSDL-FEALPDGKFDLIVSNPPF--HAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp -CTT-EEEEESST-TTTCCTTCEEEEEE---S--BTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -ccc-cccccccc-cccccccceeEEEEccch--hcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 441 33344333 111222233678888773 322221 1234444 44467999876533
No 68
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=37.74 E-value=98 Score=30.91 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=59.1
Q ss_pred HHhhhhhhc-CCCCChH-HHHHHHHHHhHHHHhhhhcCCCCCCCCCCccccccchhHHHHHHHcCCCccccCChHHHHHH
Q 041748 349 AMFDSLDDC-LPQESNK-RLSIEKNYLGKEIKSMLNCDESDNGNYDNYYPRYERMETWKARMESHEFGGIKMSSKSLIQA 426 (479)
Q Consensus 349 alFDSLda~-lp~~s~e-R~~iEr~~lg~eI~niVa~eg~~~g~~~~R~ERhE~~~~W~~rm~~AGF~~v~ls~~~~~qa 426 (479)
..-+-|... ++-...+ |.++|. -.++|.|+|+....+ .+.-+|-.-..=..-|+.|||..-|+.+ +..|+
T Consensus 75 I~~eIl~kGeiQlTaeqR~~m~e~--k~rqIi~~IsRn~Id-----P~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv 146 (234)
T COG1500 75 IAEEILKKGEIQLTAEQRREMLEE--KKRQIINIISRNAID-----PQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQV 146 (234)
T ss_pred HHHHHHhcCceeccHHHHHHHHHH--HHHHHHHHHHHhccC-----CCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHH
Confidence 333344432 3444444 444554 489999999998775 5666777788889999999999999875 77888
Q ss_pred HHHHHHhccCCCccc
Q 041748 427 KLLLKIRTHYCPLQF 441 (479)
Q Consensus 427 k~lL~~~~~~~~~~~ 441 (479)
...|+.-..--|..|
T Consensus 147 ~evlK~l~~i~pIrf 161 (234)
T COG1500 147 QEVLKALRPIIPIRF 161 (234)
T ss_pred HHHHHHHhhcCCcee
Confidence 888876544444444
No 69
>PRK04148 hypothetical protein; Provisional
Probab=36.53 E-value=1.9e+02 Score=26.39 Aligned_cols=34 Identities=15% Similarity=0.412 Sum_probs=23.2
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChH
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIE 247 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~ 247 (479)
...|+|.|+|+|+ ++-+.|++. | ..+|+|+-+..
T Consensus 17 ~~kileIG~GfG~---~vA~~L~~~---G----~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIGFYF---KVAKKLKES---G----FDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEecCCH---HHHHHHHHC---C----CEEEEEECCHH
Confidence 4679999999883 445566654 2 47888885544
No 70
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=36.00 E-value=1.2e+02 Score=30.19 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=28.6
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHH
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETEN 254 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~ 254 (479)
.-+|+|+|.|.|.--..|.+.+... ....++||+.+...++.+.+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~------~~~~v~giD~s~~~l~~A~~ 130 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEI------TTMQLFGLDISKVAIKYAAK 130 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccc------cCCeEEEECCCHHHHHHHHH
Confidence 4679999999995333333322211 12579999998877766543
No 71
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=34.98 E-value=3e+02 Score=29.23 Aligned_cols=98 Identities=17% Similarity=0.298 Sum_probs=55.2
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceecccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIR 283 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~ 283 (479)
.=+|+|+|.|.|. +...++.+ . + .++|||+.+.+.++.+.++. + + +..+|. ..+.. .+.
T Consensus 168 g~rVLDIGcG~G~----~a~~la~~--~-g---~~V~giDlS~~~l~~A~~~~----~--~-l~v~~~--~~D~~--~l~ 226 (383)
T PRK11705 168 GMRVLDIGCGWGG----LARYAAEH--Y-G---VSVVGVTISAEQQKLAQERC----A--G-LPVEIR--LQDYR--DLN 226 (383)
T ss_pred CCEEEEeCCCccH----HHHHHHHH--C-C---CEEEEEeCCHHHHHHHHHHh----c--c-CeEEEE--ECchh--hcC
Confidence 3589999998774 44555655 2 2 48999999888777776654 2 2 333332 12211 121
Q ss_pred CCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 284 KKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 284 ~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
..=+.|+.+- .++|+... ....+++.+ +-|+|.-.+++.
T Consensus 227 -~~fD~Ivs~~--~~ehvg~~-~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 227 -GQFDRIVSVG--MFEHVGPK-NYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred -CCCCEEEEeC--chhhCChH-HHHHHHHHHHHHcCCCcEEEEE
Confidence 1113343333 35677542 334566555 578998776664
No 72
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=34.93 E-value=1e+02 Score=30.30 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=40.7
Q ss_pred hhhhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHH
Q 041748 182 AHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLV 257 (479)
Q Consensus 182 ah~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~ 257 (479)
+|..+.+..++++.... ...-.|+|+|.|.|. |.-+++.. ++. +++||+.+...++.+.+++.
T Consensus 101 g~h~tt~~~l~~l~~~~---~~~~~VLDiGcGsG~----l~i~~~~~----g~~--~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 101 GTHPTTRLCLEALEKLV---LPGKTVLDVGCGSGI----LAIAAAKL----GAK--KVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred CCCHHHHHHHHHHHhhc---CCCCEEEEeCCcHHH----HHHHHHHc----CCC--eEEEEECCHHHHHHHHHHHH
Confidence 44555556777776421 234579999999983 33334433 232 59999998888887776643
No 73
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=34.09 E-value=4.5e+02 Score=28.50 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=26.4
Q ss_pred cEEEEeeccccccccchhhhHHHHHHhHccCCcEEEEEeecC
Q 041748 288 ETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQEG 329 (479)
Q Consensus 288 EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~VvtlvE~ea 329 (479)
+.++||+.=..+ ....++--...|...+|+.|+..|.+.
T Consensus 173 ~~ilIdT~GWi~---G~~g~elk~~li~~ikP~~Ii~l~~~~ 211 (398)
T COG1341 173 DFILIDTDGWIK---GWGGLELKRALIDAIKPDLIIALERAN 211 (398)
T ss_pred CEEEEcCCCcee---CchHHHHHHHHHhhcCCCEEEEecccc
Confidence 456777764322 213445566788999999999998754
No 74
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=33.26 E-value=3.8e+02 Score=24.43 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=41.7
Q ss_pred eeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHHHh-HccC
Q 041748 240 TGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIK 318 (479)
Q Consensus 240 TgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~ 318 (479)
|||+.+.+-|+...++....+.... -..+|. ..+. .++...++..=+|-+.+.||++.+ ...+|+.+ |-|+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~-~~i~~~--~~d~--~~lp~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCY-KCIEWI--EGDA--IDLPFDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCC-CceEEE--Eech--hhCCCCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcC
Confidence 6888888888877666544332221 123332 2222 223333332323334567888864 34566555 6799
Q ss_pred CcEEE-EEe
Q 041748 319 PTIVT-LVE 326 (479)
Q Consensus 319 P~Vvt-lvE 326 (479)
|.-.+ +.|
T Consensus 73 pGG~l~i~d 81 (160)
T PLN02232 73 PGSRVSILD 81 (160)
T ss_pred cCeEEEEEE
Confidence 97543 444
No 75
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=32.27 E-value=95 Score=30.08 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=36.4
Q ss_pred eeEEEecccccc---ccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHH
Q 041748 204 ALHVIDFDVSYG---FQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFS 260 (479)
Q Consensus 204 ~VHIIDf~I~~G---~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA 260 (479)
.=|++|+|-+.| .+|. + -.|+.|+++|+.+.+.++.+.+++.+|.
T Consensus 35 g~~l~DIGaGtGsi~iE~a--------~----~~p~~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWA--------L----AGPSGRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred CCEEEEeCCCccHHHHHHH--------H----hCCCceEEEEecCHHHHHHHHHHHHHhC
Confidence 449999999988 3443 2 1357999999999999999999999887
No 76
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=31.69 E-value=74 Score=29.98 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=52.0
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCee-EEEEEeeccceeccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLV-FEFQGLIRGSRLVNI 282 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvp-FeF~~v~~~~~l~~L 282 (479)
.-+|+|+|.|.|. .++ .|+.. .|..++|+|+.+...++.+.+++. ..+ ++ ++| +..+..-...
T Consensus 43 ~~~vLDiGcGtG~--~s~--~la~~-----~~~~~V~~iD~s~~~~~~a~~~~~----~~~-~~~i~~--i~~d~~~~~~ 106 (181)
T TIGR00138 43 GKKVIDIGSGAGF--PGI--PLAIA-----RPELKLTLLESNHKKVAFLREVKA----ELG-LNNVEI--VNGRAEDFQH 106 (181)
T ss_pred CCeEEEecCCCCc--cHH--HHHHH-----CCCCeEEEEeCcHHHHHHHHHHHH----HhC-CCCeEE--Eecchhhccc
Confidence 3589999999992 122 22322 124679999998876665554443 344 43 343 3332211111
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
..+=+.++.|+ ++++ ..++..+ +-|+|.-.+++.
T Consensus 107 -~~~fD~I~s~~---~~~~------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 107 -EEQFDVITSRA---LASL------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -cCCccEEEehh---hhCH------HHHHHHHHHhcCCCCEEEEE
Confidence 11224565554 3433 2344443 458898887776
No 77
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=31.66 E-value=1.1e+02 Score=29.88 Aligned_cols=86 Identities=19% Similarity=0.192 Sum_probs=46.0
Q ss_pred CCCccchhhhhHHHHHHHHHhchhcc--CceeEE-Eecc--cc-ccccchHHHHHhhcccCCCCCceEEEeeecC-----
Q 041748 176 SPYFQLAHFTANQAILEAFEEQIENN--NRALHV-IDFD--VS-YGFQWPSLIQSLSEKATNGNRISFRITGFGR----- 244 (479)
Q Consensus 176 sP~~kfah~tANqAILEA~~ge~~~~--~~~VHI-IDf~--I~-~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~----- 244 (479)
.+.+.+.+...+...++++.....+. .-.||| ||-| ++ .|+.+..+.+ ++.+- ..-|.|++.|+-.
T Consensus 92 ~~~~~l~~~vds~~~~~~l~~~a~~~~~~~~V~l~vdtg~gm~R~G~~~~e~~~-~~~~i--~~~~~l~l~Gl~th~~~~ 168 (229)
T TIGR00044 92 VENFDWVHTIDSLKIAKKLNEQREKLQPPLNVLLQINISDEESKSGIQPEELLE-LAIQI--EELKHLKLRGLMTIGAPT 168 (229)
T ss_pred hhhcCEEEEECCHHHHHHHHHHHHhcCCCceEEEEEECCCCCCCCCCCHHHHHH-HHHHH--hcCCCCeEEEEEEeCCCC
Confidence 34555555555555555554332111 125787 8884 44 7886544333 33221 2245799999952
Q ss_pred -ChHHHHHHHHHHHHHHhhcC
Q 041748 245 -SIEELQETENRLVSFSKSFR 264 (479)
Q Consensus 245 -~~~~l~etg~rL~~fA~~lg 264 (479)
+.+..++.-+.+.++.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~l~ 189 (229)
T TIGR00044 169 DSHEDQEENFRFMKLLFWQIK 189 (229)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 23445555566666665544
No 78
>PLN02366 spermidine synthase
Probab=30.40 E-value=5.4e+02 Score=26.59 Aligned_cols=109 Identities=11% Similarity=0.055 Sum_probs=58.8
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccc-e-eccc
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGS-R-LVNI 282 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~-~-l~~L 282 (479)
=+|+|+|.|.|. +...++.. |+.-+||.|+-+...++...+.+......+.+=.+++ +..+. + +...
T Consensus 93 krVLiIGgG~G~----~~rellk~-----~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~v--i~~Da~~~l~~~ 161 (308)
T PLN02366 93 KKVLVVGGGDGG----VLREIARH-----SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNL--HIGDGVEFLKNA 161 (308)
T ss_pred CeEEEEcCCccH----HHHHHHhC-----CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEE--EEChHHHHHhhc
Confidence 457888888885 55666654 3457999999887777766666655432221111222 23322 1 1111
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEE
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLV 325 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~Vvtlv 325 (479)
.-..=++|++.+.... ......--.+|++.+ +.|+|.-++++
T Consensus 162 ~~~~yDvIi~D~~dp~-~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 162 PEGTYDAIIVDSSDPV-GPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred cCCCCCEEEEcCCCCC-CchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 1123467777664321 111111124677665 67999988654
No 79
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=30.39 E-value=1e+02 Score=32.06 Aligned_cols=59 Identities=17% Similarity=0.298 Sum_probs=40.0
Q ss_pred HHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHH
Q 041748 189 AILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVS 258 (479)
Q Consensus 189 AILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~ 258 (479)
+++|++.... +.+.-||.|+|.|.|.-=-+|+..|. .-|+|+|+.+...+.-++++--.
T Consensus 136 ~Vid~~~~~~--~~~~~~ildlgtGSGaIslsll~~L~---------~~~v~AiD~S~~Ai~La~eN~qr 194 (328)
T KOG2904|consen 136 AVIDALNNSE--HSKHTHILDLGTGSGAISLSLLHGLP---------QCTVTAIDVSKAAIKLAKENAQR 194 (328)
T ss_pred HHHHHHhhhh--hcccceEEEecCCccHHHHHHHhcCC---------CceEEEEeccHHHHHHHHHHHHH
Confidence 4566665432 34567999999999964444443332 57999999988877777765433
No 80
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=30.12 E-value=1e+02 Score=29.53 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=32.0
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHH
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLV 257 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~ 257 (479)
..+|+|+|.|.| .+.-.++.+. |..++||++.+...++.+.+++.
T Consensus 88 ~~~ilDig~G~G----~~~~~l~~~~-----~~~~v~~iD~~~~~~~~a~~~~~ 132 (251)
T TIGR03534 88 PLRVLDLGTGSG----AIALALAKER-----PDARVTAVDISPEALAVARKNAA 132 (251)
T ss_pred CCeEEEEeCcHh----HHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHH
Confidence 468999999999 4444555541 34689999988877776665543
No 81
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=29.98 E-value=4.8e+02 Score=25.64 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=68.4
Q ss_pred HHHH-HHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCee
Q 041748 189 AILE-AFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLV 267 (479)
Q Consensus 189 AILE-A~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvp 267 (479)
++|. ++... +-=+++|.|.+-| .|=+.||.| -=++|+++-+...++.+.+||... +||.
T Consensus 33 ~~l~aaLp~~-----ry~~alEvGCs~G----~lT~~LA~r-------Cd~LlavDis~~Al~~Ar~Rl~~~----~~V~ 92 (201)
T PF05401_consen 33 ATLLAALPRR-----RYRRALEVGCSIG----VLTERLAPR-------CDRLLAVDISPRALARARERLAGL----PHVE 92 (201)
T ss_dssp HHHHHHHTTS-----SEEEEEEE--TTS----HHHHHHGGG-------EEEEEEEES-HHHHHHHHHHTTT-----SSEE
T ss_pred HHHHHhcCcc-----ccceeEecCCCcc----HHHHHHHHh-------hCceEEEeCCHHHHHHHHHhcCCC----CCeE
Confidence 4565 45543 5678999999988 577889988 358999999999999999999764 3365
Q ss_pred EEEEEeeccceeccccCCCC-cEEEEeeccccccccchhhhHHHHHH-hHccCCcEEEEEee
Q 041748 268 FEFQGLIRGSRLVNIRKKKH-ETVAANLVFHLNTLKIYLKISDTLNL-VRSIKPTIVTLVEQ 327 (479)
Q Consensus 268 FeF~~v~~~~~l~~L~~~~~-EaLaVN~~~~Lh~L~~~~~~~~~L~~-Ir~L~P~VvtlvE~ 327 (479)
|.--.|...+ .... +.+|+.-+ ++.|.+...+..++.. +..|.|.-..|+-.
T Consensus 93 ~~~~dvp~~~------P~~~FDLIV~SEV--lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 93 WIQADVPEFW------PEGRFDLIVLSEV--LYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEES-TTT---------SS-EEEEEEES---GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECcCCCCC------CCCCeeEEEEehH--hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5443332111 1111 23444433 6777654455666554 46899998877754
No 82
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=29.47 E-value=4.1e+02 Score=27.13 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=58.0
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCee-EEEEEeeccc-eecc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLV-FEFQGLIRGS-RLVN 281 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvp-FeF~~v~~~~-~l~~ 281 (479)
.-+|+|++.|.|. +--.||.+ + -+++||+.+...++.+.++.. ..| ++ .+|. ..+. +...
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~---~----~~V~gvD~s~~av~~A~~n~~----~~~-l~~v~~~--~~D~~~~~~ 235 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP---G----MQLTGIEISAEAIACAKQSAA----ELG-LTNVQFQ--ALDSTQFAT 235 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc---C----CEEEEEeCCHHHHHHHHHHHH----HcC-CCceEEE--EcCHHHHHH
Confidence 3589999999994 33445554 2 279999998888877765543 333 42 4443 2222 1111
Q ss_pred ccCCCCcEEEEeeccccccccchhhhHHHHHHhHccCCcEEEEEe
Q 041748 282 IRKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVE 326 (479)
Q Consensus 282 L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~VvtlvE 326 (479)
.....-++|++|=. ..+....++..+.+++|+-++.+.
T Consensus 236 ~~~~~~D~Vv~dPP-------r~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 236 AQGEVPDLVLVNPP-------RRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred hcCCCCeEEEECCC-------CCCccHHHHHHHHHcCCCeEEEEE
Confidence 00112357777733 112234677788889999887775
No 83
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=28.39 E-value=5.5e+02 Score=24.81 Aligned_cols=112 Identities=16% Similarity=0.106 Sum_probs=64.3
Q ss_pred HHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCee
Q 041748 188 QAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLV 267 (479)
Q Consensus 188 qAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvp 267 (479)
..|++|+.- -+.-.++|+|.|.|.- ---||.+ | ..+|+++.+...++. |.+.|+.-+ ++
T Consensus 20 s~v~~a~~~-----~~~g~~LDlgcG~GRN----alyLA~~----G---~~VtAvD~s~~al~~----l~~~a~~~~-l~ 78 (192)
T PF03848_consen 20 SEVLEAVPL-----LKPGKALDLGCGEGRN----ALYLASQ----G---FDVTAVDISPVALEK----LQRLAEEEG-LD 78 (192)
T ss_dssp HHHHHHCTT-----S-SSEEEEES-TTSHH----HHHHHHT----T----EEEEEESSHHHHHH----HHHHHHHTT--T
T ss_pred HHHHHHHhh-----cCCCcEEEcCCCCcHH----HHHHHHC----C---CeEEEEECCHHHHHH----HHHHHhhcC-ce
Confidence 456777653 2466899999999931 1236666 2 789999988776554 456677766 88
Q ss_pred EEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHHHhH-ccCCcEEEEEe
Q 041748 268 FEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVR-SIKPTIVTLVE 326 (479)
Q Consensus 268 FeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir-~L~P~VvtlvE 326 (479)
.+.... ++....+. ++.=+|.+...+++|..+ .++.++..++ .++|--+.+.+
T Consensus 79 i~~~~~----Dl~~~~~~-~~yD~I~st~v~~fL~~~-~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 79 IRTRVA----DLNDFDFP-EEYDFIVSTVVFMFLQRE-LRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEEEE-----BGCCBS-T-TTEEEEEEESSGGGS-GG-GHHHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEEe----cchhcccc-CCcCEEEEEEEeccCCHH-HHHHHHHHHHhhcCCcEEEEEE
Confidence 555432 22222332 333344454556777654 5667777765 68997554443
No 84
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=27.95 E-value=1.2e+02 Score=28.27 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=31.1
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHH
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVS 258 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~ 258 (479)
-.|+|+|.|.|. +--.++.+ . |..+||+|+.+...++.+.++...
T Consensus 33 ~~vLDiG~G~G~----~~~~la~~----~-~~~~v~~vD~s~~~~~~a~~n~~~ 77 (187)
T PRK08287 33 KHLIDVGAGTGS----VSIEAALQ----F-PSLQVTAIERNPDALRLIKENRQR 77 (187)
T ss_pred CEEEEECCcCCH----HHHHHHHH----C-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 469999999982 23334444 1 347899999988877776655543
No 85
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=27.70 E-value=3.1e+02 Score=27.72 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=57.6
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceecccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIR 283 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~ 283 (479)
-=||+|+|.| |=+++..+|++- | .++|||..+.+..+.+.++.. ..| ++=....+..+.. ++.
T Consensus 63 G~~vLDiGcG----wG~~~~~~a~~~---g---~~v~gitlS~~Q~~~a~~~~~----~~g-l~~~v~v~~~D~~--~~~ 125 (273)
T PF02353_consen 63 GDRVLDIGCG----WGGLAIYAAERY---G---CHVTGITLSEEQAEYARERIR----EAG-LEDRVEVRLQDYR--DLP 125 (273)
T ss_dssp T-EEEEES-T----TSHHHHHHHHHH--------EEEEEES-HHHHHHHHHHHH----CST-SSSTEEEEES-GG--G--
T ss_pred CCEEEEeCCC----ccHHHHHHHHHc---C---cEEEEEECCHHHHHHHHHHHH----hcC-CCCceEEEEeecc--ccC
Confidence 4699999876 558888899882 2 689999988876666655543 445 4422222233321 122
Q ss_pred CCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748 284 KKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE 326 (479)
Q Consensus 284 ~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE 326 (479)
..=|-++.|- .+-|+.. ...+.+++.+ +-|+|.-..++.
T Consensus 126 ~~fD~IvSi~---~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 GKFDRIVSIE---MFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp -S-SEEEEES---EGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCCCEEEEEe---chhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 2223233332 2566653 3566788887 579999887764
No 86
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=27.16 E-value=4.7e+02 Score=28.13 Aligned_cols=98 Identities=10% Similarity=0.102 Sum_probs=59.1
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCe-eEEEEEeeccc-e-ec
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNL-VFEFQGLIRGS-R-LV 280 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnv-pFeF~~v~~~~-~-l~ 280 (479)
.-+|+|+|.|.|. +--.||.+ + -+++||+.+.+.++.+.+++. ..+ + ..+|. ..+. + +.
T Consensus 298 ~~~VLDlgcGtG~----~sl~la~~---~----~~V~gvD~s~~al~~A~~n~~----~~~-~~~v~~~--~~d~~~~l~ 359 (443)
T PRK13168 298 GDRVLDLFCGLGN----FTLPLARQ---A----AEVVGVEGVEAMVERARENAR----RNG-LDNVTFY--HANLEEDFT 359 (443)
T ss_pred CCEEEEEeccCCH----HHHHHHHh---C----CEEEEEeCCHHHHHHHHHHHH----HcC-CCceEEE--EeChHHhhh
Confidence 4689999999994 33356665 2 379999999888888776553 222 3 23332 2222 1 11
Q ss_pred cccC--CCCcEEEEeeccccccccchhhhHHHHHHhHccCCcEEEEEee
Q 041748 281 NIRK--KKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQ 327 (479)
Q Consensus 281 ~L~~--~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~VvtlvE~ 327 (479)
.+.. ..-++|++|=... ...+++..+.+++|+-++.+.-
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~--------g~~~~~~~l~~~~~~~ivyvSC 400 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRA--------GAAEVMQALAKLGPKRIVYVSC 400 (443)
T ss_pred hhhhhcCCCCEEEECcCCc--------ChHHHHHHHHhcCCCeEEEEEe
Confidence 1111 1225666665421 1346678888899999988864
No 87
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=27.13 E-value=5.8e+02 Score=24.66 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCC
Q 041748 186 ANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRN 265 (479)
Q Consensus 186 ANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgn 265 (479)
.-+.+++.+... +.-+|+|+|.|.|. +.+.|+.+ + -++|+++.+.+.++...++.. .
T Consensus 30 ~a~~l~~~l~~~-----~~~~vLDiGcG~G~----~~~~l~~~---~----~~v~~~D~s~~~l~~a~~~~~------~- 86 (251)
T PRK10258 30 SADALLAMLPQR-----KFTHVLDAGCGPGW----MSRYWRER---G----SQVTALDLSPPMLAQARQKDA------A- 86 (251)
T ss_pred HHHHHHHhcCcc-----CCCeEEEeeCCCCH----HHHHHHHc---C----CeEEEEECCHHHHHHHHhhCC------C-
Confidence 344455655431 23569999999993 55666654 2 378999988776665544321 1
Q ss_pred eeEEEEEeeccceeccccCCCC--cEEEEeeccccccccchhhhHHHHHH-hHccCCcEEEEE
Q 041748 266 LVFEFQGLIRGSRLVNIRKKKH--ETVAANLVFHLNTLKIYLKISDTLNL-VRSIKPTIVTLV 325 (479)
Q Consensus 266 vpFeF~~v~~~~~l~~L~~~~~--EaLaVN~~~~Lh~L~~~~~~~~~L~~-Ir~L~P~Vvtlv 325 (479)
+. | +..+. ..+...++ +.|+.| +.+|+..+. ..+|.. .+-|+|.-.++.
T Consensus 87 ~~--~--~~~d~--~~~~~~~~~fD~V~s~--~~l~~~~d~---~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 87 DH--Y--LAGDI--ESLPLATATFDLAWSN--LAVQWCGNL---STALRELYRVVRPGGVVAF 138 (251)
T ss_pred CC--E--EEcCc--ccCcCCCCcEEEEEEC--chhhhcCCH---HHHHHHHHHHcCCCeEEEE
Confidence 11 2 22222 11222222 344444 446666542 345554 467899765554
No 88
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=26.43 E-value=1.4e+02 Score=28.38 Aligned_cols=56 Identities=25% Similarity=0.276 Sum_probs=46.0
Q ss_pred cHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCCChhhhHHHHHHHHHHHhhcc
Q 041748 92 HLIHLLLITA-TAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLT 147 (479)
Q Consensus 92 ~L~~LLl~CA-~AV~~gd~~~A~~~L~~L~~~aS~~Gd~~qRlA~yFaeAL~~Rl~~ 147 (479)
.+..+|+-+. ..+..++...|..++..|.+...|..+...|+...|.+|+..=..|
T Consensus 126 ~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 126 RVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 4666666665 7788889999999999999988777788899999999999765544
No 89
>PLN03075 nicotianamine synthase; Provisional
Probab=26.34 E-value=5.5e+02 Score=26.59 Aligned_cols=107 Identities=8% Similarity=-0.018 Sum_probs=58.6
Q ss_pred EEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccccCC
Q 041748 206 HVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKK 285 (479)
Q Consensus 206 HIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~~ 285 (479)
.|+|+|.|.|-=|..++.+-. .|.-++|||+.+.+.++.+.+.+.+ ...+.+ ..+|+..... +.. ....
T Consensus 126 ~VldIGcGpgpltaiilaa~~-------~p~~~~~giD~d~~ai~~Ar~~~~~-~~gL~~-rV~F~~~Da~-~~~-~~l~ 194 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHH-------LPTTSFHNFDIDPSANDVARRLVSS-DPDLSK-RMFFHTADVM-DVT-ESLK 194 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhc-------CCCCEEEEEeCCHHHHHHHHHHhhh-ccCccC-CcEEEECchh-hcc-cccC
Confidence 489999998755554443222 2234999999988877766544433 122221 2444432111 110 0112
Q ss_pred CCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEee
Q 041748 286 KHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVEQ 327 (479)
Q Consensus 286 ~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE~ 327 (479)
+=+.|.+. .||++....+ ..+|+.| +.|+|.-++++.-
T Consensus 195 ~FDlVF~~---ALi~~dk~~k-~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 195 EYDVVFLA---ALVGMDKEEK-VKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CcCEEEEe---cccccccccH-HHHHHHHHHhcCCCcEEEEec
Confidence 22344444 5777754333 4555555 6699999988875
No 90
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=25.80 E-value=1.5e+02 Score=30.50 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=59.5
Q ss_pred ceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccc
Q 041748 203 RALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNI 282 (479)
Q Consensus 203 ~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L 282 (479)
.--||+|+|.| |=+|+.-.|.+ - -.++|||.-+.+.+....+|+. ..| ++=..+.+..+++- +
T Consensus 72 ~G~~lLDiGCG----WG~l~~~aA~~--y----~v~V~GvTlS~~Q~~~~~~r~~----~~g-l~~~v~v~l~d~rd--~ 134 (283)
T COG2230 72 PGMTLLDIGCG----WGGLAIYAAEE--Y----GVTVVGVTLSEEQLAYAEKRIA----ARG-LEDNVEVRLQDYRD--F 134 (283)
T ss_pred CCCEEEEeCCC----hhHHHHHHHHH--c----CCEEEEeeCCHHHHHHHHHHHH----HcC-CCcccEEEeccccc--c
Confidence 45799999765 55888888887 2 2799999988887777766554 334 43112222233311 1
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHHHhHc-cCCcEEEEE
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLVRS-IKPTIVTLV 325 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~-L~P~Vvtlv 325 (479)
.-.-|-.| ++=.++|+..+ ..+++++.+++ |+|.-..+.
T Consensus 135 ~e~fDrIv---SvgmfEhvg~~-~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 135 EEPFDRIV---SVGMFEHVGKE-NYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred ccccceee---ehhhHHHhCcc-cHHHHHHHHHhhcCCCceEEE
Confidence 11112222 23335677643 46788888864 777755443
No 91
>PRK07402 precorrin-6B methylase; Provisional
Probab=25.80 E-value=2.7e+02 Score=26.05 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=41.8
Q ss_pred chhhhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHH
Q 041748 181 LAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSF 259 (479)
Q Consensus 181 fah~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~f 259 (479)
...-...+.+++.+.-. +.=.|+|+|.|.|. +-..++.. . |.-+||+|+.+.+.++.+.+++.++
T Consensus 23 ~t~~~v~~~l~~~l~~~-----~~~~VLDiG~G~G~----~~~~la~~--~---~~~~V~~vD~s~~~~~~a~~n~~~~ 87 (196)
T PRK07402 23 LTKREVRLLLISQLRLE-----PDSVLWDIGAGTGT----IPVEAGLL--C---PKGRVIAIERDEEVVNLIRRNCDRF 87 (196)
T ss_pred CCHHHHHHHHHHhcCCC-----CCCEEEEeCCCCCH----HHHHHHHH--C---CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 44555556667776532 23469999999995 22233433 1 1258999999988888777776543
No 92
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=24.70 E-value=1.3e+02 Score=31.22 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHH
Q 041748 186 ANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLV 257 (479)
Q Consensus 186 ANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~ 257 (479)
.-+.+|+-+... ..-+|+|||.|+|. |==.|+.+ .|..+||-++-+...++-....|.
T Consensus 146 GS~lLl~~l~~~-----~~~~vlDlGCG~Gv----lg~~la~~-----~p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 146 GSRLLLETLPPD-----LGGKVLDLGCGYGV----LGLVLAKK-----SPQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred HHHHHHHhCCcc-----CCCcEEEeCCCccH----HHHHHHHh-----CCCCeEEEEecCHHHHHHHHHhHH
Confidence 467889999875 23499999999994 22235555 248999999988887777776665
No 93
>PRK01581 speE spermidine synthase; Validated
Probab=24.44 E-value=4.3e+02 Score=28.36 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=54.6
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHH--HHHHHHhh-cCCeeEEEEEeeccc-eec
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETEN--RLVSFSKS-FRNLVFEFQGLIRGS-RLV 280 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~--rL~~fA~~-lgnvpFeF~~v~~~~-~l~ 280 (479)
=+|+++|.|.|. .+.+.| .. |+.-+||+|+-+.+.++.+.. .|.++.+. +. .=..+.+..+. +.
T Consensus 152 krVLIIGgGdG~---tlrelL-k~-----~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~--DpRV~vvi~Da~~f- 219 (374)
T PRK01581 152 KRVLILGGGDGL---ALREVL-KY-----ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFF--DNRVNVHVCDAKEF- 219 (374)
T ss_pred CEEEEECCCHHH---HHHHHH-hc-----CCCCeEEEEeCCHHHHHHHHhccccchhccccCC--CCceEEEECcHHHH-
Confidence 389999998885 444444 33 345689999877765544443 22222221 11 00222223222 10
Q ss_pred cccC--CCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEE
Q 041748 281 NIRK--KKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLV 325 (479)
Q Consensus 281 ~L~~--~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~Vvtlv 325 (479)
+.. ..=++|++++.--........--.+|++.+ +.|+|.-++++
T Consensus 220 -L~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~ 266 (374)
T PRK01581 220 -LSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVC 266 (374)
T ss_pred -HHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 111 223688888642211111111124677766 57999988665
No 94
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=24.21 E-value=1e+02 Score=29.01 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=59.0
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccc-eeccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGS-RLVNI 282 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~-~l~~L 282 (479)
.--|+|+|.|.| .++-.||.+. |...++||+.+.+.++.+.+++.+. .++|| +| +..+. ++...
T Consensus 17 ~~~ilDiGcG~G----~~~~~la~~~-----p~~~v~gvD~~~~~l~~a~~~~~~~--~l~ni--~~--i~~d~~~~~~~ 81 (194)
T TIGR00091 17 APLHLEIGCGKG----RFLIDMAKQN-----PDKNFLGIEIHTPIVLAANNKANKL--GLKNL--HV--LCGDANELLDK 81 (194)
T ss_pred CceEEEeCCCcc----HHHHHHHHhC-----CCCCEEEEEeeHHHHHHHHHHHHHh--CCCCE--EE--EccCHHHHHHh
Confidence 347999999998 4455667661 3568999999888887777666432 22333 22 33332 21111
Q ss_pred cCCCC--cEEEEeecccccccc---chhhhHHHHHHh-HccCCcEEEEEee
Q 041748 283 RKKKH--ETVAANLVFHLNTLK---IYLKISDTLNLV-RSIKPTIVTLVEQ 327 (479)
Q Consensus 283 ~~~~~--EaLaVN~~~~Lh~L~---~~~~~~~~L~~I-r~L~P~VvtlvE~ 327 (479)
-..++ +.+.+|+..-.+.-. .......+|+.+ +.|+|.-.+...-
T Consensus 82 ~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 82 FFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred hCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 11122 356666542111100 001124577665 6689987766654
No 95
>PHA03411 putative methyltransferase; Provisional
Probab=23.96 E-value=1.5e+02 Score=30.54 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=49.0
Q ss_pred HHHHHHhcCCCccchhhhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChH
Q 041748 168 AFTDLYRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIE 247 (479)
Q Consensus 168 A~~~f~e~sP~~kfah~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~ 247 (479)
.|..|..-. +...+.|++.+.|+..+--.. ...-+|+|+|.|.|. +...++.+. + ..+||+|+.+..
T Consensus 33 v~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~---~~~grVLDLGcGsGi----lsl~la~r~--~---~~~V~gVDisp~ 99 (279)
T PHA03411 33 CYNNYHGDG-LGGSGAFFTPEGLAWDFTIDA---HCTGKVLDLCAGIGR----LSFCMLHRC--K---PEKIVCVELNPE 99 (279)
T ss_pred HHHhccccc-ccCceeEcCCHHHHHHHHhcc---ccCCeEEEcCCCCCH----HHHHHHHhC--C---CCEEEEEECCHH
Confidence 455666666 777888999999986653211 224579999999993 333455541 1 268999998877
Q ss_pred HHHHHHH
Q 041748 248 ELQETEN 254 (479)
Q Consensus 248 ~l~etg~ 254 (479)
.++.+.+
T Consensus 100 al~~Ar~ 106 (279)
T PHA03411 100 FARIGKR 106 (279)
T ss_pred HHHHHHH
Confidence 6655543
No 96
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=23.65 E-value=2.6e+02 Score=28.19 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=66.5
Q ss_pred cCCCccch--hhhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHH
Q 041748 175 VSPYFQLA--HFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQET 252 (479)
Q Consensus 175 ~sP~~kfa--h~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~et 252 (479)
+-|-.-|+ +..+.+-.++.++... .+.-.|+|+|.|.|. |..+++.. | + -+++||+.+...++.+
T Consensus 132 ldpg~aFgtG~h~tt~l~l~~l~~~~---~~g~~VLDvGcGsG~----lai~aa~~---g-~--~~V~avDid~~al~~a 198 (288)
T TIGR00406 132 LDPGLAFGTGTHPTTSLCLEWLEDLD---LKDKNVIDVGCGSGI----LSIAALKL---G-A--AKVVGIDIDPLAVESA 198 (288)
T ss_pred ECCCCcccCCCCHHHHHHHHHHHhhc---CCCCEEEEeCCChhH----HHHHHHHc---C-C--CeEEEEECCHHHHHHH
Confidence 34544443 4556666777776421 234689999999984 33444443 2 2 3899999988888877
Q ss_pred HHHHHHHHhhcCCeeEEEEEeeccceeccccCCCCcEEEEeeccccccccchhhhHHHHHH-hHccCCcEEEEE
Q 041748 253 ENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNL-VRSIKPTIVTLV 325 (479)
Q Consensus 253 g~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~-Ir~L~P~Vvtlv 325 (479)
.+++. ..+ +...+..+.... ....-.+=+.|+.|... + .+..++.. .+.|+|.-.++.
T Consensus 199 ~~n~~----~n~-~~~~~~~~~~~~--~~~~~~~fDlVvan~~~--~------~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 199 RKNAE----LNQ-VSDRLQVKLIYL--EQPIEGKADVIVANILA--E------VIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred HHHHH----HcC-CCcceEEEeccc--ccccCCCceEEEEecCH--H------HHHHHHHHHHHHcCCCcEEEE
Confidence 76654 223 443333222211 11111122566666531 1 12334433 477889866555
No 97
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=23.02 E-value=6.3e+02 Score=26.56 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=58.1
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCee-EEEEEeeccc-eeccc
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLV-FEFQGLIRGS-RLVNI 282 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvp-FeF~~v~~~~-~l~~L 282 (479)
-+|+|++.|.| .+--.||.+ + -+++||+.+...++.+.+++. ..+ ++ .+|. ..+. +...-
T Consensus 235 ~~vLDL~cG~G----~~~l~la~~---~----~~v~~vE~~~~av~~a~~N~~----~~~-~~~~~~~--~~d~~~~~~~ 296 (374)
T TIGR02085 235 TQMWDLFCGVG----GFGLHCAGP---D----TQLTGIEIESEAIACAQQSAQ----MLG-LDNLSFA--ALDSAKFATA 296 (374)
T ss_pred CEEEEccCCcc----HHHHHHhhc---C----CeEEEEECCHHHHHHHHHHHH----HcC-CCcEEEE--ECCHHHHHHh
Confidence 36899999988 233344543 2 279999998888877776653 333 42 3332 2322 11110
Q ss_pred cCCCCcEEEEeeccccccccchhhhHHHHHHhHccCCcEEEEEee
Q 041748 283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQ 327 (479)
Q Consensus 283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~VvtlvE~ 327 (479)
...+-++|++|=+. .+....++..|..++|+-+|.++-
T Consensus 297 ~~~~~D~vi~DPPr-------~G~~~~~l~~l~~~~p~~ivyvsc 334 (374)
T TIGR02085 297 QMSAPELVLVNPPR-------RGIGKELCDYLSQMAPKFILYSSC 334 (374)
T ss_pred cCCCCCEEEECCCC-------CCCcHHHHHHHHhcCCCeEEEEEe
Confidence 01223678888442 123356788888899988888763
No 98
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=22.54 E-value=1.8e+02 Score=28.80 Aligned_cols=62 Identities=11% Similarity=0.181 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHH
Q 041748 184 FTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLV 257 (479)
Q Consensus 184 ~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~ 257 (479)
|..++.|++.+..... -.+.=+|+|+|.|.|. |...|+.+ + .++|+|+.+...++...+++.
T Consensus 11 fl~d~~~~~~iv~~~~-~~~~~~VLEIG~G~G~----lt~~L~~~---~----~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 11 FLIDDRVVDRIVEYAE-DTDGDPVLEIGPGKGA----LTDELAKR---A----KKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred ccCCHHHHHHHHHhcC-CCCcCeEEEEeCccCH----HHHHHHHh---C----CEEEEEECCHHHHHHHHHHhc
Confidence 5567777776654310 0123579999999994 55666665 1 279999988777766665553
No 99
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=22.34 E-value=1.8e+02 Score=28.64 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHH
Q 041748 184 FTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRL 256 (479)
Q Consensus 184 ~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL 256 (479)
|..|..|++.+-.... ..+.=.|+|+|.|.|. |...|+.+ + + ++++|+.+.+.++.+.+++
T Consensus 11 fl~d~~i~~~i~~~~~-~~~~~~VLEiG~G~G~----lt~~L~~~---~-~---~v~~iE~d~~~~~~l~~~~ 71 (253)
T TIGR00755 11 FLIDESVIQKIVEAAN-VLEGDVVLEIGPGLGA----LTEPLLKR---A-K---KVTAIEIDPRLAEILRKLL 71 (253)
T ss_pred cCCCHHHHHHHHHhcC-CCCcCEEEEeCCCCCH----HHHHHHHh---C-C---cEEEEECCHHHHHHHHHHh
Confidence 5556555555543210 0134589999999995 67777777 2 2 3999998877666555443
No 100
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=22.25 E-value=2.1e+02 Score=26.78 Aligned_cols=90 Identities=12% Similarity=0.188 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCCccchh----hhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceE--EE
Q 041748 166 FLAFTDLYRVSPYFQLAH----FTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISF--RI 239 (479)
Q Consensus 166 ~~A~~~f~e~sP~~kfah----~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~L--RI 239 (479)
..++-.+++.+||..-+. |..-.++++|+.. +..+..|...++.|..=|+=|+++.. .+
T Consensus 10 ~~~l~~~~e~~~W~~~~~~~RPf~s~~~L~~a~~~---------------~~~~~~~~~~~~~l~~HP~lg~~~~~~~~~ 74 (158)
T TIGR03180 10 SATLMECCAIPAWARTLVAARPFASAEALLAAADQ---------------AWQNLSEQDLFEALAGHPRIGEKPAGQAAY 74 (158)
T ss_pred HHHHHHhccChHHHHHHHHcCCCCCHHHHHHHHHH---------------HHHcCCHHHHHHHHHhCCcccCccccccch
Confidence 455666677777763222 4445666666665 23456777777777765544443221 11
Q ss_pred e--------eec-CChHHHHHHHHHHHHHHhhcCCeeEEEE
Q 041748 240 T--------GFG-RSIEELQETENRLVSFSKSFRNLVFEFQ 271 (479)
Q Consensus 240 T--------gI~-~~~~~l~etg~rL~~fA~~lgnvpFeF~ 271 (479)
| |++ .+.+..++..+-=..|-++|| .||=..
T Consensus 75 ~~~S~~EQagl~~~~~~~~~~L~~lN~~Y~~kFG-fpFii~ 114 (158)
T TIGR03180 75 AATSRREQAGVDGADEETRAALLEGNAAYEEKFG-RIFLIR 114 (158)
T ss_pred hhhhHHHHhcccCCCHHHHHHHHHHHHHHHHHCC-CeEEEe
Confidence 1 232 244556666666678999998 888664
No 101
>PRK03612 spermidine synthase; Provisional
Probab=21.61 E-value=6.6e+02 Score=27.81 Aligned_cols=110 Identities=9% Similarity=0.053 Sum_probs=56.9
Q ss_pred eEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHH--HHHHHHh-hcCCeeEEEEEeeccc-eec
Q 041748 205 LHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETEN--RLVSFSK-SFRNLVFEFQGLIRGS-RLV 280 (479)
Q Consensus 205 VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~--rL~~fA~-~lgnvpFeF~~v~~~~-~l~ 280 (479)
=.|+|+|.|.|. +...+.++ |+--+||+|+-+.+.++...+ .+.++.. .+.+ | .++.+..+. +..
T Consensus 299 ~rVL~IG~G~G~----~~~~ll~~-----~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~d-p-rv~vi~~Da~~~l 367 (521)
T PRK03612 299 RRVLVLGGGDGL----ALREVLKY-----PDVEQVTLVDLDPAMTELARTSPALRALNGGALDD-P-RVTVVNDDAFNWL 367 (521)
T ss_pred CeEEEEcCCccH----HHHHHHhC-----CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCC-C-ceEEEEChHHHHH
Confidence 368999999884 34445544 223699999988776666555 3333321 1110 1 122233332 111
Q ss_pred cccCCCCcEEEEeeccccccccchh--hhHHHHHHh-HccCCcEEEEEee
Q 041748 281 NIRKKKHETVAANLVFHLNTLKIYL--KISDTLNLV-RSIKPTIVTLVEQ 327 (479)
Q Consensus 281 ~L~~~~~EaLaVN~~~~Lh~L~~~~--~~~~~L~~I-r~L~P~VvtlvE~ 327 (479)
.-...+=+++++|+... .-.... --.++++.+ +.|+|.-++++.-
T Consensus 368 ~~~~~~fDvIi~D~~~~--~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 368 RKLAEKFDVIIVDLPDP--SNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred HhCCCCCCEEEEeCCCC--CCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 00113447888886531 111111 123566554 6799998877753
No 102
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=21.44 E-value=1.1e+02 Score=30.95 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=32.3
Q ss_pred EEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHH
Q 041748 206 HVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVS 258 (479)
Q Consensus 206 HIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~ 258 (479)
||+|+|.|.| .-+++-.. . -|..+|+|++-+.+.++-+.++...
T Consensus 113 ~ilDlGTGSG------~iai~la~--~-~~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 113 RILDLGTGSG------AIAIALAK--E-GPDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred cEEEecCChH------HHHHHHHh--h-CcCCeEEEEECCHHHHHHHHHHHHH
Confidence 9999999999 44444431 1 2458999999998888877766443
No 103
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=21.39 E-value=1.2e+02 Score=30.85 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=18.7
Q ss_pred CceeEEEeccccccccchHHHHHhhc
Q 041748 202 NRALHVIDFDVSYGFQWPSLIQSLSE 227 (479)
Q Consensus 202 ~~~VHIIDf~I~~G~QWpsLiqaLA~ 227 (479)
.+.+||||+|-+.+.+ -.+|.+++.
T Consensus 57 a~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 57 LTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCEEEEEECCCCCccc-HHHHHHHHh
Confidence 5899999999766666 445666665
No 104
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=20.68 E-value=1.9e+02 Score=27.19 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=32.0
Q ss_pred ceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHH
Q 041748 203 RALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVS 258 (479)
Q Consensus 203 ~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~ 258 (479)
..-.|+|+|.|.| .+.-.++... ++.-+|++|+.+.+.++.+.+++..
T Consensus 40 ~~~~vlDlG~GtG----~~s~~~a~~~----~~~~~v~avD~~~~~~~~a~~n~~~ 87 (198)
T PRK00377 40 KGDMILDIGCGTG----SVTVEASLLV----GETGKVYAVDKDEKAINLTRRNAEK 87 (198)
T ss_pred CcCEEEEeCCcCC----HHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHH
Confidence 3468999999998 2222333331 1235899999988888777766554
No 105
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=20.18 E-value=65 Score=26.01 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=17.3
Q ss_pred cchhHHHHHHHcCCCccccCC
Q 041748 399 ERMETWKARMESHEFGGIKMS 419 (479)
Q Consensus 399 E~~~~W~~rm~~AGF~~v~ls 419 (479)
++..+-+.+|+.+|++|+.+.
T Consensus 3 ~RV~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHHHcCCCcceee
Confidence 455677899999999999874
No 106
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=20.11 E-value=2e+02 Score=22.44 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=32.2
Q ss_pred HHHHHHHhhhhhhcCCCCChHHHHHHHHHHhHHHHhhhhcCC
Q 041748 344 LHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEIKSMLNCDE 385 (479)
Q Consensus 344 L~yYsalFDSLda~lp~~s~eR~~iEr~~lg~eI~niVa~eg 385 (479)
...|..+++.|+ .+|.++.-|...|. +-++-.+||..++
T Consensus 8 ~~lY~~~L~~L~-~~P~~a~YR~~tE~--it~~Rl~iv~~~~ 46 (57)
T PF04716_consen 8 ISLYNKTLKALK-KIPEDAAYRQYTEA--ITKHRLKIVEEEE 46 (57)
T ss_pred HHHHHHHHHHHH-hCCCccHHHHHHHH--HHHHHHHHHHccc
Confidence 356999999999 58999999999997 4677788887653
No 107
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=20.06 E-value=8.4e+02 Score=23.95 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=66.0
Q ss_pred eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceecccc
Q 041748 204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIR 283 (479)
Q Consensus 204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~ 283 (479)
---|+|+|.|.| |=+++.- --|| =|+++|+.+.+.++-..++..+ ++ ..++|- .+ ++..+.
T Consensus 46 g~~V~DlG~GTG------~La~ga~--~lGa--~~V~~vdiD~~a~ei~r~N~~~----l~-g~v~f~--~~--dv~~~~ 106 (198)
T COG2263 46 GKTVLDLGAGTG------ILAIGAA--LLGA--SRVLAVDIDPEALEIARANAEE----LL-GDVEFV--VA--DVSDFR 106 (198)
T ss_pred CCEEEEcCCCcC------HHHHHHH--hcCC--cEEEEEecCHHHHHHHHHHHHh----hC-CceEEE--Ec--chhhcC
Confidence 356999999999 5555543 1233 5889999988888777766665 44 466663 22 233344
Q ss_pred CCCCcEEEEeeccccccccchhhhHHHHHHhHccCCcEEEEEeecCCCCCCchhHHHHHHH
Q 041748 284 KKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQEGSRSPRNFLSRFMESL 344 (479)
Q Consensus 284 ~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~Ir~L~P~VvtlvE~ea~~ns~~F~~RF~eaL 344 (479)
...+ +++.|=.|....= . +...||..--.++=.|. .-..+ .+-+|+.+|.+.+
T Consensus 107 ~~~d-tvimNPPFG~~~r--h-aDr~Fl~~Ale~s~vVY--siH~a--~~~~f~~~~~~~~ 159 (198)
T COG2263 107 GKFD-TVIMNPPFGSQRR--H-ADRPFLLKALEISDVVY--SIHKA--GSRDFVEKFAADL 159 (198)
T ss_pred Cccc-eEEECCCCccccc--c-CCHHHHHHHHHhhheEE--Eeecc--ccHHHHHHHHHhc
Confidence 4444 8889999876521 1 22234443333442222 21112 2556777776655
Done!