BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041751
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|6 Chain 6, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|F Chain F, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|6 Chain 6, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|6 Chain 6, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|G Chain G, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 181
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/140 (54%), Positives = 100/140 (71%), Gaps = 2/140 (1%)
Query: 63 VISKVDNLLNWVRRGSLWPMTFGLACCAVEMMHTGAAGYDLDRFGI-IFRPSPRQSDVMI 121
+ + ++ L+ W R SLWP TFGLACCA+EMM + A DL RFG +FR SPRQ+DVMI
Sbjct: 20 LFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMI 79
Query: 122 VAGTLTNKMAPALRKVYDQMPEPRWVISMGSRANXXXXXXXXXXXXXXCDRIVPVDIYVP 181
VAG L+ KMAP +R+V++QMP+P+WVISMG+ A+ D +VPVD+YVP
Sbjct: 80 VAGRLSKKMAPVMRRVWEQMPDPKWVISMGACAS-SGGMFNNYAIVQNVDSVVPVDVYVP 138
Query: 182 GCPPTAEALLYGILQLQKKI 201
GCPP EAL+Y ++QLQKK+
Sbjct: 139 GCPPRPEALIYAVMQLQKKV 158
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 107 GIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 145
G R + + DV +V TL+ A ++K++DQM PR
Sbjct: 76 GATMRRAIEKYDVNVVGLTLSENQAGHVQKMFDQMDTPR 114
>pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From
Mycobacterium Tuberculosis
Length = 287
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 107 GIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 145
G R + Q DV +V TL+ A ++K +D+M PR
Sbjct: 76 GATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDEMDTPR 114
>pdb|3IZR|B Chain B, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 261
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 48 RATFGPVGLSKASEYVISKVDNLLNWVR-RGSLWPMTFGLACCAVEMMHTGAAGYDLDRF 106
RA G V +E + K N + R + + WP G+A VE H G +
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHA 222
Query: 107 GIIFRPSPRQSDVMIVAGTLTNKM 130
+ R +P V ++A T ++
Sbjct: 223 STVRRDAPPGQKVGLIAARRTGRL 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,252,122
Number of Sequences: 62578
Number of extensions: 172411
Number of successful extensions: 403
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 5
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)