Query 041751
Match_columns 213
No_of_seqs 203 out of 1443
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 17:33:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_6 NADH-quinone oxidoreduc 100.0 2.3E-55 7.9E-60 370.1 11.0 155 56-211 13-168 (181)
2 1yq9_A Periplasmic [NIFE] hydr 100.0 9E-41 3.1E-45 295.1 4.3 139 75-213 6-182 (264)
3 1wui_S Periplasmic [NIFE] hydr 100.0 2.4E-40 8.1E-45 292.7 3.1 139 74-213 5-185 (267)
4 1h2a_S Hydrogenase; SO ligand, 100.0 1.5E-40 5.2E-45 300.2 1.7 140 73-213 54-235 (317)
5 2wpn_A Periplasmic [nifese] hy 100.0 9.6E-40 3.3E-44 295.0 5.2 139 75-213 41-239 (317)
6 1cc1_S Hydrogenase (small subu 100.0 4.7E-39 1.6E-43 286.6 2.6 139 75-213 7-205 (283)
7 3ayx_B Membrane-bound hydrogen 100.0 1.7E-38 5.7E-43 283.1 4.4 139 75-213 12-193 (283)
8 1yqw_A Periplasmic [NIFE] hydr 100.0 3.2E-37 1.1E-41 272.4 3.6 137 75-213 6-181 (264)
9 3myr_A Hydrogenase (NIFE) smal 100.0 1.6E-36 5.3E-41 268.8 2.7 139 75-213 3-182 (269)
10 3uqy_S Hydrogenase-1 small cha 100.0 1.9E-36 6.4E-41 275.2 2.7 140 74-213 5-184 (335)
11 3rgw_S Membrane-bound hydrogen 100.0 5.5E-36 1.9E-40 272.4 5.5 140 74-213 5-184 (339)
12 2is8_A Molybdopterin biosynthe 63.9 1.9 6.5E-05 34.2 0.7 29 175-204 124-156 (164)
13 2g2c_A Putative molybdenum cof 57.8 4.2 0.00014 32.2 1.7 20 175-195 135-154 (167)
14 2pbq_A Molybdenum cofactor bio 57.6 4.8 0.00016 32.4 2.1 17 178-194 132-148 (178)
15 3cu5_A Two component transcrip 56.6 51 0.0017 23.5 8.4 79 116-205 49-128 (141)
16 1y5e_A Molybdenum cofactor bio 52.6 4.3 0.00015 32.3 1.0 17 175-192 136-152 (169)
17 1di6_A MOGA, molybdenum cofact 46.3 5.9 0.0002 32.6 0.9 18 175-193 128-145 (195)
18 3pzy_A MOG; ssgcid, seattle st 43.7 6.2 0.00021 31.4 0.6 30 175-205 128-161 (164)
19 2pjk_A 178AA long hypothetical 43.2 6 0.0002 31.9 0.4 17 175-192 146-162 (178)
20 3gra_A Transcriptional regulat 42.0 16 0.00055 29.3 2.9 40 114-153 69-110 (202)
21 3cne_A Putative protease I; st 41.2 13 0.00045 28.6 2.2 41 114-154 64-114 (175)
22 3ewn_A THIJ/PFPI family protei 40.1 28 0.00097 29.3 4.3 40 114-153 82-126 (253)
23 3h5i_A Response regulator/sens 38.1 1E+02 0.0035 21.6 8.1 81 115-207 49-131 (140)
24 1jlj_A Gephyrin; globular alph 37.4 6.9 0.00024 31.9 -0.0 15 116-130 78-92 (189)
25 3er6_A Putative transcriptiona 36.4 29 0.00098 27.9 3.6 39 115-153 73-117 (209)
26 3jte_A Response regulator rece 36.1 73 0.0025 22.3 5.4 80 115-205 48-128 (143)
27 3noq_A THIJ/PFPI family protei 35.8 34 0.0012 28.1 4.0 39 115-153 64-106 (231)
28 3hv2_A Response regulator/HD d 35.7 1.2E+02 0.004 21.6 6.7 79 116-205 58-138 (153)
29 3f5d_A Protein YDEA; unknow pr 35.6 28 0.00097 28.1 3.4 40 114-153 61-102 (206)
30 3cg4_A Response regulator rece 34.7 1.1E+02 0.0039 21.1 8.5 80 116-206 51-133 (142)
31 1u9c_A APC35852; structural ge 34.5 35 0.0012 27.3 3.8 41 114-154 87-132 (224)
32 2vrn_A Protease I, DR1199; cys 34.4 20 0.00068 27.9 2.2 40 115-154 74-118 (190)
33 1uz5_A MOEA protein, 402AA lon 34.0 36 0.0012 30.9 4.1 78 116-203 246-324 (402)
34 2qv0_A Protein MRKE; structura 33.6 92 0.0031 21.7 5.6 77 116-205 55-132 (143)
35 3rfq_A Pterin-4-alpha-carbinol 33.3 12 0.0004 30.7 0.7 17 115-131 88-104 (185)
36 3l18_A Intracellular protease 31.4 27 0.00093 26.5 2.5 39 115-153 62-104 (168)
37 2rk3_A Protein DJ-1; parkinson 31.1 21 0.00071 28.1 1.8 41 114-154 64-109 (197)
38 3efe_A THIJ/PFPI family protei 30.0 33 0.0011 27.6 2.9 41 114-154 72-115 (212)
39 4hcj_A THIJ/PFPI domain protei 29.5 39 0.0013 26.8 3.2 40 113-152 66-109 (177)
40 3ot1_A 4-methyl-5(B-hydroxyeth 29.1 22 0.00074 28.5 1.7 41 114-154 69-114 (208)
41 4e08_A DJ-1 beta; flavodoxin-l 28.3 24 0.00081 27.6 1.7 41 114-154 65-110 (190)
42 2fts_A Gephyrin; gephyrin, neu 27.8 69 0.0024 29.1 5.0 78 116-203 247-331 (419)
43 1vhq_A Enhancing lycopene bios 27.0 25 0.00085 28.7 1.7 41 114-154 88-143 (232)
44 3hdg_A Uncharacterized protein 25.7 88 0.003 21.7 4.3 80 116-206 51-131 (137)
45 2wcv_A L-fucose mutarotase; ri 25.5 41 0.0014 26.5 2.6 25 135-159 108-132 (140)
46 2ab0_A YAJL; DJ-1/THIJ superfa 25.4 23 0.0008 28.2 1.2 41 114-154 64-109 (205)
47 2ohh_A Type A flavoprotein FPR 25.4 74 0.0025 27.2 4.5 93 66-158 243-357 (404)
48 3e7n_A D-ribose high-affinity 24.7 40 0.0014 26.4 2.4 25 135-159 110-134 (142)
49 2fex_A Conserved hypothetical 24.5 28 0.00096 27.1 1.5 41 114-154 61-104 (188)
50 3mvk_A Protein FUCU, protein R 24.5 44 0.0015 26.5 2.6 25 135-159 113-137 (148)
51 1n57_A Chaperone HSP31, protei 24.1 62 0.0021 27.6 3.7 41 114-154 143-188 (291)
52 3dsa_A D-ribose high-affinity 24.1 38 0.0013 26.7 2.2 25 135-159 110-134 (142)
53 1ycg_A Nitric oxide reductase; 23.8 82 0.0028 26.9 4.5 90 65-154 237-345 (398)
54 1g8l_A Molybdopterin biosynthe 23.8 43 0.0015 30.5 2.8 79 116-204 243-322 (411)
55 1m46_B IQ4, IQ4 motif from MYO 23.3 52 0.0018 18.8 2.0 15 190-204 2-16 (26)
56 1ogd_A High affinity ribose tr 23.2 42 0.0014 26.2 2.2 25 135-159 99-123 (131)
57 3l5o_A Uncharacterized protein 22.4 36 0.0012 29.5 1.9 36 115-152 185-220 (270)
58 2fsv_C NAD(P) transhydrogenase 22.3 5 0.00017 34.0 -3.5 51 105-155 81-133 (203)
59 2wcu_A FUCU, protein FUCU homo 21.1 42 0.0014 26.7 1.9 25 135-159 117-141 (149)
60 1oi4_A Hypothetical protein YH 20.7 42 0.0014 26.4 1.8 41 114-154 84-128 (193)
No 1
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=100.00 E-value=2.3e-55 Score=370.12 Aligned_cols=155 Identities=52% Similarity=0.984 Sum_probs=132.6
Q ss_pred CCCCcceeehhhHHHHhhhhcCCcceecccCCccHHHHHhcCCCCcchhhhcc-eecCCCCCeeEEEEecccCCCChHHH
Q 041751 56 LSKASEYVISKVDNLLNWVRRGSLWPMTFGLACCAVEMMHTGAAGYDLDRFGI-IFRPSPRQSDVMIVAGTLTNKMAPAL 134 (213)
Q Consensus 56 ~~~~~~~~~~~~d~~~~w~R~~siW~~~~gc~GC~iE~l~~~~~~~Dl~rfgi-~~~~sPr~aDIliVeG~Vt~km~~~l 134 (213)
.....+++.+++|+++||+|++|+|++++||+||++||+++..|+||++|||+ .|+++|||+||++|||+|+++|++.+
T Consensus 13 ~~~~~~~~~~~~~~l~~w~R~~slW~~~~gc~cC~iEll~~~~p~yDl~rfGi~~~~aSPrqaDiliVeG~Vt~~m~~~l 92 (181)
T 3i9v_6 13 ELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRLSKKMAPVM 92 (181)
T ss_dssp --CTTSHHHHHHHHHHHHHHTTSCCCEEEECSTHHHHHTTTTTTC----------------CCCCEEEESCCBTTTHHHH
T ss_pred HhccCCchHHHHHHHHhhcccCCcccccCCCCchHHHHHHhhhchhhHHHcCcccccCCCCCceEEEEeccCCcccHHHH
Confidence 34457899999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHCCCCceEEEecCccCcCCCCCCCCccccCCCccccceEEccCCCCCHHHHHHHHHHHHHHHhhcCCccccc
Q 041751 135 RKVYDQMPEPRWVISMGSRANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKINRRRDFLHWW 211 (213)
Q Consensus 135 ~~l~e~~~~pk~VIA~GsCA~~GGi~~~sy~~~~gv~~vVpVDi~IPGCPP~Pe~il~~L~~Ll~ki~~~~~~~~~y 211 (213)
+++||+|++||+|||+|+||++||+| ++|++++|++++||||+|||||||+||+|+++|++|++||++++....|.
T Consensus 93 ~~~~e~~p~pk~VIAvGsCA~~GGi~-~~y~~~~gvd~iipVDv~IPGCPP~Pe~il~~l~~l~~ki~~~~~~~~~~ 168 (181)
T 3i9v_6 93 RRVWEQMPDPKWVISMGACASSGGMF-NNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAYNERGE 168 (181)
T ss_dssp HHHHHSSCSSCCEEEEHHHHHSCTTC-CSTTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHTTCCBCTTSC
T ss_pred HHHHHHcCCCceEEEeecccccCCCC-CCCcccCCcccCCCccEEeeCCCCCHHHHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999999 89999999999999999999999999999999999999999888765554
No 2
>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A
Probab=100.00 E-value=9e-41 Score=295.06 Aligned_cols=139 Identities=16% Similarity=0.288 Sum_probs=130.7
Q ss_pred hcCCcceecccCCccHHHHHhcCCCCcc---hhhhcceecCCC----------------CCeeEEEEecccCCCCh----
Q 041751 75 RRGSLWPMTFGLACCAVEMMHTGAAGYD---LDRFGIIFRPSP----------------RQSDVMIVAGTLTNKMA---- 131 (213)
Q Consensus 75 R~~siW~~~~gc~GC~iE~l~~~~~~~D---l~rfgi~~~~sP----------------r~aDIliVeG~Vt~km~---- 131 (213)
|.+++|++.++|+||++||+++.+|.+| +++|+++|++++ +|+||+||||+|+++|+
T Consensus 6 ~~~v~wl~~~~C~GC~isll~~~~p~~~~ll~~~i~i~~~~s~~~~~g~~a~~~~~~~~~~~diliVeGsV~~~~~g~~~ 85 (264)
T 1yq9_A 6 RPSVVYLHNAECTGCSESVLRTVDPYVDELILDVISMDYHETLMAGAGHAVEEALHEAIKGDFVCVIEGGIPMGDGGYWG 85 (264)
T ss_dssp SCEEEEEECBCCSHHHHHHHTCTTTTHHHHHHHTCEEEECTTTCSSCTHHHHHHHHHHTTSSEEEEEESBEECGGGSTTB
T ss_pred CCcEEEEeCCccCchHHHHHhcCCcCHHHHHhhheeeEecCChhhhcchhHHHHHhhhccCCeEEEEeCCcccCCCccee
Confidence 6789999999999999999999999888 389999999987 89999999999999995
Q ss_pred -----HHHHHHHHHCCCCceEEEecCccCcCCCCCC--CCccccCCCcccc----ceEEccCCCCCHHHHHHHHHHHHH-
Q 041751 132 -----PALRKVYDQMPEPRWVISMGSRANGGGYYHY--SYSVVRGCDRIVP----VDIYVPGCPPTAEALLYGILQLQK- 199 (213)
Q Consensus 132 -----~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~--sy~~~~gv~~vVp----VDi~IPGCPP~Pe~il~~L~~Ll~- 199 (213)
+.++++||+|++||+|||+|+||++||||+. +|+++.|++++|+ +|||||||||+||+|+++|++|++
T Consensus 86 ~~~~~~~~~~l~~~~~~~k~VIA~GsCA~~GGi~a~~~n~~~~~gv~~~l~~~~~~di~IPGCPP~Pe~i~~~l~~ll~~ 165 (264)
T 1yq9_A 86 KVGGRNMYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLTK 165 (264)
T ss_dssp EETTEEHHHHHHHHGGGSSEEEEEHHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHHT
T ss_pred ecCcHHHHHHHHHHhccCCEEEEeccccccCCCCCCCCCCccccChhHhccCCCCeEEEEECCCCCHHHHHHHHHHHHhC
Confidence 8899999999999999999999999999976 6788899999998 899999999999999999999998
Q ss_pred ---HHhhcCCccccccC
Q 041751 200 ---KINRRRDFLHWWTK 213 (213)
Q Consensus 200 ---ki~~~~~~~~~y~~ 213 (213)
++++.+||++||++
T Consensus 166 ~~p~Ld~~~RP~~~~~~ 182 (264)
T 1yq9_A 166 GMPELDKQGRPVMFFGE 182 (264)
T ss_dssp CSCCBCTTSCBHHHHSS
T ss_pred CCCCccccCCchhhhCC
Confidence 67999999999975
No 3
>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A*
Probab=100.00 E-value=2.4e-40 Score=292.69 Aligned_cols=139 Identities=19% Similarity=0.306 Sum_probs=126.8
Q ss_pred hhcCCcceecccCCccHHHHHhcCCCCcc---hhhhcceec-------------------CCCCCeeEEEEecccCCCCh
Q 041751 74 VRRGSLWPMTFGLACCAVEMMHTGAAGYD---LDRFGIIFR-------------------PSPRQSDVMIVAGTLTNKMA 131 (213)
Q Consensus 74 ~R~~siW~~~~gc~GC~iE~l~~~~~~~D---l~rfgi~~~-------------------~sPr~aDIliVeG~Vt~km~ 131 (213)
.|.+++|++.++|+||++||+++.+|.|| +++++++|+ ++|+| ||++|||+|+++|+
T Consensus 5 ~r~~v~wl~~~~C~GC~isll~~~~p~~d~lll~~i~l~y~~~l~~~~g~~~e~~~~~~~~~p~~-Dil~VeG~V~~~~~ 83 (267)
T 1wui_S 5 RRPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHG-FIAVVEGGIPTAAN 83 (267)
T ss_dssp SSCEEEEEECBCCSHHHHHHHTCTTTTHHHHHHTTCEEEECTTTCSCCHHHHHHHHHHHHTCTTC-EEEEEESBEECGGG
T ss_pred CCccEEEEecCccCcHHHHHHhcCCCCHHHHHhhheeeeecchhhhhhhHHHHHHHHHHhcCCCC-eEEEEeCCCccCCC
Confidence 46789999999999999999999999998 567777775 36899 99999999999998
Q ss_pred ---------HHHHHHHHHCCCCceEEEecCccCcCCCCCCCCc--cccCCCcccc---c-eEEccCCCCCHHHHHHHHHH
Q 041751 132 ---------PALRKVYDQMPEPRWVISMGSRANGGGYYHYSYS--VVRGCDRIVP---V-DIYVPGCPPTAEALLYGILQ 196 (213)
Q Consensus 132 ---------~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~sy~--~~~gv~~vVp---V-Di~IPGCPP~Pe~il~~L~~ 196 (213)
+.++++||+|++||+|||+|+||++||||+.+|+ .+.||+++|+ | |||||||||+||+|+++|++
T Consensus 84 g~~~~~~g~~~l~~~~e~~~~ak~VIAvGsCA~~GGi~a~~~n~t~~~gv~~vv~~~~vpdi~IPGCPP~Pe~i~~~l~~ 163 (267)
T 1wui_S 84 GIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVY 163 (267)
T ss_dssp GTTBEETTEEHHHHHHHHGGGSSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHH
T ss_pred cceeecCChHHHHHHHHHhccCCEEEEeeeccccCCCCCCcCCCcCCCCHHHhcCcCCceEEEEeCCCCCHHHHHHHHHH
Confidence 8899999999999999999999999999988665 6789999999 7 99999999999999999999
Q ss_pred HH-H----HHhhcCCccccccC
Q 041751 197 LQ-K----KINRRRDFLHWWTK 213 (213)
Q Consensus 197 Ll-~----ki~~~~~~~~~y~~ 213 (213)
|+ . ++++.+||++||++
T Consensus 164 ll~~g~~p~ld~~~RP~~~~~~ 185 (267)
T 1wui_S 164 YLKNKAAPELDSLNRPTMFFGQ 185 (267)
T ss_dssp HHHHSSCCCBCTTSCBHHHHSS
T ss_pred HHHcCCCcCccccCCchhhhCC
Confidence 75 3 47899999999975
No 4
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1
Probab=100.00 E-value=1.5e-40 Score=300.20 Aligned_cols=140 Identities=19% Similarity=0.295 Sum_probs=129.1
Q ss_pred hhhcCCcceecccCCccHHHHHhcCCCCcc---hhhhcceecC-------------------CCCCeeEEEEecccCCCC
Q 041751 73 WVRRGSLWPMTFGLACCAVEMMHTGAAGYD---LDRFGIIFRP-------------------SPRQSDVMIVAGTLTNKM 130 (213)
Q Consensus 73 w~R~~siW~~~~gc~GC~iE~l~~~~~~~D---l~rfgi~~~~-------------------sPr~aDIliVeG~Vt~km 130 (213)
..|.+++|++.+||+||++||+++.+|.|| +++++++|++ +|+| ||++|||+|+++|
T Consensus 54 ~~r~~v~Wl~~~~C~GC~is~l~~~~p~~d~lll~~i~l~y~~~lm~~~G~~ae~~~~~~~~~pr~-DIliVeGsV~~~~ 132 (317)
T 1h2a_S 54 PRRPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHG-FIAVVEGGIPTAA 132 (317)
T ss_dssp SSSCEEEEEECBCCSHHHHHHTTCTTTTHHHHHHTTCEEEECTTTCSCCHHHHHHHHHHHHSCTTC-CEEEEESBEECGG
T ss_pred CCCCeEEEeeCCccCcHHHHHHhcCCCCHHHHHhhceeeeecchhhhhchhHHHHHHHHHhcCCCC-eEEEEeCCCcCCC
Confidence 468899999999999999999999999999 5788888876 6899 9999999999999
Q ss_pred ---------hHHHHHHHHHCCCCceEEEecCccCcCCCCCC--CCccccCCCcccc---c-eEEccCCCCCHHHHHHHHH
Q 041751 131 ---------APALRKVYDQMPEPRWVISMGSRANGGGYYHY--SYSVVRGCDRIVP---V-DIYVPGCPPTAEALLYGIL 195 (213)
Q Consensus 131 ---------~~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~--sy~~~~gv~~vVp---V-Di~IPGCPP~Pe~il~~L~ 195 (213)
.+.++++||+|++||+|||+|+||++||||+. +|+++.||+++|| | |||||||||+||+|+++|+
T Consensus 133 ~g~~~~~~g~~~l~~l~e~~~~ak~VIAvGsCA~~GGi~a~~~npt~~~gv~~vvp~~~vpdi~IPGCPP~Pe~i~~~l~ 212 (317)
T 1h2a_S 133 NGIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIV 212 (317)
T ss_dssp GGTTBEETTEEHHHHHHHHGGGCSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCBCCCCSSCCHHHHHHHHH
T ss_pred CCcceeeCChHHHHHHHHHhccCCEEEEeccccccCCcCCCCCCCccCcCHHHhcCcCCceEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999999999999999999987 4558999999999 8 9999999999999999999
Q ss_pred HHH-H----HHhhcCCccccccC
Q 041751 196 QLQ-K----KINRRRDFLHWWTK 213 (213)
Q Consensus 196 ~Ll-~----ki~~~~~~~~~y~~ 213 (213)
+|+ . ++++.+||++||++
T Consensus 213 ~lL~~g~~p~Ld~~~RP~~~~~~ 235 (317)
T 1h2a_S 213 YYLKNKAAPELDSLNRPTMFFGQ 235 (317)
T ss_dssp HHHTTSSCCCBCTTSCBHHHHSS
T ss_pred HHHHcCCCCCccccCCchhhhcC
Confidence 985 2 48999999999975
No 5
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=100.00 E-value=9.6e-40 Score=294.96 Aligned_cols=139 Identities=15% Similarity=0.315 Sum_probs=129.2
Q ss_pred hcCCcceecccCCccHHHHHhcCCCCcch---hhhcceecCCC-------------------CCeeEEEEecccCCCCh-
Q 041751 75 RRGSLWPMTFGLACCAVEMMHTGAAGYDL---DRFGIIFRPSP-------------------RQSDVMIVAGTLTNKMA- 131 (213)
Q Consensus 75 R~~siW~~~~gc~GC~iE~l~~~~~~~Dl---~rfgi~~~~sP-------------------r~aDIliVeG~Vt~km~- 131 (213)
|.+++|++.++|+||++||+++..|.||. +++++.|++++ +|+||+||||+|+++|+
T Consensus 41 ~~~v~wl~~~~C~GC~isll~~~~p~~d~ll~~~i~l~~~~slm~~~g~~a~~~l~~~~~~~~~~DIliVEGsV~~~~~g 120 (317)
T 2wpn_A 41 RPPVFWLQGQGCTGCSVTLLNSVHPSIADVLLKVISLEFHPTVMAWEGEHAIEHMRKVAEKFKGKFFLVIEGSVPVEADG 120 (317)
T ss_dssp CCEEEEEESBCCSHHHHHHHTCCCTTHHHHHHHTCEEEECTTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBEECTGGG
T ss_pred CceEEEEeCCcCCcHHHHHHhcCCCCHHHHHhhceeeEecCchhhhcchHHHHHHHHHhccCCCCeEEEEeCCcccCCCc
Confidence 56899999999999999999999999997 89999999865 89999999999999998
Q ss_pred -------------HHHHHHHHHCCCCceEEEecCccCcCCCCC--CCCccccCCCccc-----cc-eEEccCCCCCHHHH
Q 041751 132 -------------PALRKVYDQMPEPRWVISMGSRANGGGYYH--YSYSVVRGCDRIV-----PV-DIYVPGCPPTAEAL 190 (213)
Q Consensus 132 -------------~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~--~sy~~~~gv~~vV-----pV-Di~IPGCPP~Pe~i 190 (213)
+.++++|++|++||+|||+|+||++||||+ .+|+.+.||+++| +| |||||||||+||+|
T Consensus 121 ~~~~~~~~~~~~~~~~e~l~e~~~~ak~VIAvGsCA~~GGI~a~~~n~t~~~gv~~il~~~~~~vp~I~IPGCPP~Pe~i 200 (317)
T 2wpn_A 121 KYCIIGEANHHEISMVDALKEFGPNAAAVLAVGTCAAYGGIPAAEGSETGATAVSKFLGDNGIKTPVVNIPGCPPHPDWI 200 (317)
T ss_dssp TTBEEEEETTEEEEHHHHHHHHGGGEEEEEEEHHHHHHCTGGGSTTCCSCEECHHHHHHHTTCCCCEEEECSSSCCHHHH
T ss_pred ceeeecccccCCcCHHHHHHHHhccCCEEEEeccccccCCCCCCCCCCccccCHHHHhhccCCCCCeEEeeCCCCCHHHH
Confidence 889999999999999999999999999997 4788899999999 67 99999999999999
Q ss_pred HHHHHHHHHHH----------------hhcCCccccccC
Q 041751 191 LYGILQLQKKI----------------NRRRDFLHWWTK 213 (213)
Q Consensus 191 l~~L~~Ll~ki----------------~~~~~~~~~y~~ 213 (213)
+++|++|++++ ++.+||++||++
T Consensus 201 ~~~L~~ll~~~~~~~~~~g~~~~~p~Ld~~~RP~~~~~~ 239 (317)
T 2wpn_A 201 VGTVVLALDAIKKNGLEGGLAEVVKVLDSDGRPTPFFGR 239 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTBCTTSCBHHHHSS
T ss_pred HHHHHHHHhcccccccccccccCCCCccccCCchhhcCC
Confidence 99999998765 678899999974
No 6
>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
Probab=100.00 E-value=4.7e-39 Score=286.56 Aligned_cols=139 Identities=15% Similarity=0.322 Sum_probs=128.2
Q ss_pred hcCCcceecccCCccHHHHHhcCCCCcch---hhhcceecCCC-------------------CCeeEEEEecccCCCCh-
Q 041751 75 RRGSLWPMTFGLACCAVEMMHTGAAGYDL---DRFGIIFRPSP-------------------RQSDVMIVAGTLTNKMA- 131 (213)
Q Consensus 75 R~~siW~~~~gc~GC~iE~l~~~~~~~Dl---~rfgi~~~~sP-------------------r~aDIliVeG~Vt~km~- 131 (213)
+.+++|++.++|+||++||+++..|.+|. +++++.|++++ +|+||++|||+|+++|+
T Consensus 7 ~~~v~wl~~~~C~GC~isll~~~~p~~~~ll~~~i~l~~~~sl~~~~g~~a~~~l~~~~~~~~~~DilvVEGsV~~~~~g 86 (283)
T 1cc1_S 7 KAPVIWVQGQGCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEG 86 (283)
T ss_dssp CEEEEEEESBCCSHHHHHHHTCBTTBHHHHHHHTEEEEECTTTCSCCHHHHHHHHHHHHHHTTTSSEEEEESBEECGGGG
T ss_pred CccEEEEecCccCcHHHHHHhccCCCHHHHHhhceeEEeccchhhhcchHHHHHHHHHHhcCCCceEEEEeCCcccCCCc
Confidence 56889999999999999999999999986 89999999986 89999999999999999
Q ss_pred ------------------HHHHHHHHHCCCCceEEEecCccCcCCCCCC--CCccccCCCccc-----cc-eEEccCCCC
Q 041751 132 ------------------PALRKVYDQMPEPRWVISMGSRANGGGYYHY--SYSVVRGCDRIV-----PV-DIYVPGCPP 185 (213)
Q Consensus 132 ------------------~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~--sy~~~~gv~~vV-----pV-Di~IPGCPP 185 (213)
+.++++|++|++||+|||+|+||++||||+. +|+.+.++++++ ++ |||||||||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~le~l~~~~~~ak~VIAvGtCA~~GGI~a~~~n~t~~~gv~~vl~~~~~~~p~i~IPGCPP 166 (283)
T 1cc1_S 87 RYCIVGETLDAKAHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPP 166 (283)
T ss_dssp TTBEEEC---CCSSSCCEEHHHHHHHHGGGSSEEEEESHHHHHCTGGGSTTCCSCEECHHHHHHHHTCCCCEEEECCSSC
T ss_pred eeeeecCccccccccccccHHHHHHHHhccCCEEEEEeeccccCCcCCCCCCCcccccHHHHhhcccCCCceEEeeCCCC
Confidence 8999999999999999999999999999975 777889999997 77 899999999
Q ss_pred CHHHHHHHHHHHHH-----------HHhhcCCccccccC
Q 041751 186 TAEALLYGILQLQK-----------KINRRRDFLHWWTK 213 (213)
Q Consensus 186 ~Pe~il~~L~~Ll~-----------ki~~~~~~~~~y~~ 213 (213)
+||+|+++|++|+. .+++.+||++||++
T Consensus 167 ~Pe~i~~~L~~l~~~~~~ll~~~~p~Ld~~~RP~~~~~~ 205 (283)
T 1cc1_S 167 HPDWMVGTLVAAWSHVLNPTEHPLPELDDDGRPLLFFGD 205 (283)
T ss_dssp CHHHHHHHHHHHHHHHHSTTTSCCCCBCTTSCBHHHHSS
T ss_pred CHHHHHHHHHHHhhhhhHHHhCCCCCccccCCchhhcCC
Confidence 99999999999543 46788899999974
No 7
>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B
Probab=100.00 E-value=1.7e-38 Score=283.08 Aligned_cols=139 Identities=19% Similarity=0.332 Sum_probs=127.7
Q ss_pred hcCCcceecccCCccHHHHHhcCCCCc-ch--hhhcceecCC-------------------CCCeeEEEEecccCCCCh-
Q 041751 75 RRGSLWPMTFGLACCAVEMMHTGAAGY-DL--DRFGIIFRPS-------------------PRQSDVMIVAGTLTNKMA- 131 (213)
Q Consensus 75 R~~siW~~~~gc~GC~iE~l~~~~~~~-Dl--~rfgi~~~~s-------------------Pr~aDIliVeG~Vt~km~- 131 (213)
|.+.+|++..+|+||++||+++..|.+ |+ +.+++.|+++ ++++||++|||+|+++|+
T Consensus 12 ~~~v~wl~~~~C~GC~islL~~~~P~~~d~l~~~i~l~~~~tl~~a~g~~a~~~l~~~~~~~~~~dilvVeG~V~~~~~g 91 (283)
T 3ayx_B 12 RTPVIWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDYDDTLMAASGHAAEAILDEIKEKYKGNYILAVEGNPPLNQDG 91 (283)
T ss_dssp CEEEEEEECBCCSHHHHHHHTCSSSCHHHHHHHTEEEEEETTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBCBCSGGG
T ss_pred CceEEEEeCCccCcHHHHHHhcCCCcHHHHHhhceeEEEecchhhhcchhHHHHHHHHhccCCCCeEEEEeCCCccCCCc
Confidence 778999999999999999999999988 74 4578889875 378999999999999998
Q ss_pred --------HHHHHHHHHCCCCceEEEecCccCcCCCCCC--CCccccCCCcccc--ce---EEccCCCCCHHHHHHHHHH
Q 041751 132 --------PALRKVYDQMPEPRWVISMGSRANGGGYYHY--SYSVVRGCDRIVP--VD---IYVPGCPPTAEALLYGILQ 196 (213)
Q Consensus 132 --------~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~--sy~~~~gv~~vVp--VD---i~IPGCPP~Pe~il~~L~~ 196 (213)
+.++++||+|++||+|||+|+||++||||+. +|+.+.|++++|+ || ||||||||+||+|+++|++
T Consensus 92 ~~~~~~g~~~l~~~~~~~~~ak~VIA~GsCA~~GGi~a~~pn~~~~~gv~~~i~~~vd~pvi~IPGCPP~Pe~i~~~l~~ 171 (283)
T 3ayx_B 92 MSCIIGGRPFSEQLKRMADDAKAIISWGSCASWGCVQAAKPNPTQATPVHKFLGGGYDKPIIKVPGCPPIAEVMTGVITY 171 (283)
T ss_dssp TTBEETTEEHHHHHHHHHHTEEEEEEEHHHHHTCTGGGSTTCTTCBCCHHHHHCTTCCSCEEEECSSSCCHHHHHHHHHH
T ss_pred ceeeeCCcHHHHHHHHHcccCCEEEEeeeccccCCCCCCCCCCccCcChhHhccccCCCceEEeeCCCCCHHHHHHHHHH
Confidence 8999999999999999999999999999986 7889999999999 99 9999999999999999999
Q ss_pred -HHH----HHhhcCCccccccC
Q 041751 197 -LQK----KINRRRDFLHWWTK 213 (213)
Q Consensus 197 -Ll~----ki~~~~~~~~~y~~ 213 (213)
|+. .+++.+||++||++
T Consensus 172 ~Ll~G~~p~Ld~~~RP~~~y~~ 193 (283)
T 3ayx_B 172 MLTFDRIPELDRQGRPKMFYSQ 193 (283)
T ss_dssp HHHHSSCCCBCTTSCBHHHHSS
T ss_pred HHHcCCCCCcccccCchhhhCC
Confidence 444 48999999999975
No 8
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=100.00 E-value=3.2e-37 Score=272.41 Aligned_cols=137 Identities=18% Similarity=0.339 Sum_probs=125.7
Q ss_pred hcCCcceecccCCccHHHHHhcCCCCcc-h--hhhcceecCC-------------------CCCeeEEEEecccCCCCh-
Q 041751 75 RRGSLWPMTFGLACCAVEMMHTGAAGYD-L--DRFGIIFRPS-------------------PRQSDVMIVAGTLTNKMA- 131 (213)
Q Consensus 75 R~~siW~~~~gc~GC~iE~l~~~~~~~D-l--~rfgi~~~~s-------------------Pr~aDIliVeG~Vt~km~- 131 (213)
|.+.+|++..+|+||++||+++.+|.+| + +++++.|+++ +++ ||++|||+|+++|+
T Consensus 6 ~~~v~wl~~~~C~GC~isll~~~~P~~d~ll~~~i~l~~~~tlm~a~g~~a~~~~~~~~~~~~~-dil~VeG~V~~~~~g 84 (264)
T 1yqw_A 6 RPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDG-YYLVVEGGLPTIDGG 84 (264)
T ss_dssp CCEEEEEECBCCSHHHHHHTTCBTTBHHHHHHHTCEEEEETTTCSCCHHHHHHHHHHHHTCTTC-EEEEEESBEECGGGG
T ss_pred CceEEEEeCCccCcHHHHHHHcCCCCHHHHHhcceEEEEecchhhhchhhHHHHHHHHhccCCC-eEEEEeCCcccCCCc
Confidence 6688999999999999999999999998 4 6788888865 367 99999999999998
Q ss_pred --------HHHHHHHHHCCCCceEEEecCccCcCCCCCC--CCccccCCCc--cccceEEccCCCCCHHHHHHHHHHHHH
Q 041751 132 --------PALRKVYDQMPEPRWVISMGSRANGGGYYHY--SYSVVRGCDR--IVPVDIYVPGCPPTAEALLYGILQLQK 199 (213)
Q Consensus 132 --------~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~--sy~~~~gv~~--vVpVDi~IPGCPP~Pe~il~~L~~Ll~ 199 (213)
+.++++||+|++||+|||+|+||++||||+. +|+.+.|+++ ++|| ||||||||+||+|+++|++|++
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~k~VIA~GsCA~~GGi~a~~~n~~~~~gv~~v~~~PV-i~IPGCPP~Pe~i~~~l~~ll~ 163 (264)
T 1yqw_A 85 QWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKT-INIPGCPPNPINFVGAVVHVLT 163 (264)
T ss_dssp TTBEETTEEHHHHHHHHHHTCSCEEEESHHHHHCCGGGSTTCTTCEECHHHHHTSCC-EEECSSSCCHHHHHHHHHHHHH
T ss_pred cceeeCChHHHHHHHHHhcCCCEEEEeccccccCCccCCCCCCcccccccccCCCCE-EEeeCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999999999999987 5667889998 6899 9999999999999999999998
Q ss_pred ----HHhhcCCccccccC
Q 041751 200 ----KINRRRDFLHWWTK 213 (213)
Q Consensus 200 ----ki~~~~~~~~~y~~ 213 (213)
.+++.+||++||.+
T Consensus 164 ~~~p~Ld~~~RP~~~~~~ 181 (264)
T 1yqw_A 164 KGIPDLDENGRPKLFYGE 181 (264)
T ss_dssp TCCCCBCTTSCBHHHHSS
T ss_pred CCCccccccCCchhhcCC
Confidence 78999999999974
No 9
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0
Probab=100.00 E-value=1.6e-36 Score=268.79 Aligned_cols=139 Identities=18% Similarity=0.282 Sum_probs=124.7
Q ss_pred hcCCcceecccCCccHHHHHhcCCCCcc--h-hhhcceecCCC-------------------CCeeEEEEecccC--CCC
Q 041751 75 RRGSLWPMTFGLACCAVEMMHTGAAGYD--L-DRFGIIFRPSP-------------------RQSDVMIVAGTLT--NKM 130 (213)
Q Consensus 75 R~~siW~~~~gc~GC~iE~l~~~~~~~D--l-~rfgi~~~~sP-------------------r~aDIliVeG~Vt--~km 130 (213)
|.+.+|++..+|+||+++|+++..|.+| + +.+.+.|+++- +++||++|||+|+ +++
T Consensus 3 r~~viWl~~~~C~GCt~SlL~~~~p~l~~ll~~~I~l~yhptl~~~~G~~a~~~l~~~~~~~~~~dilvVEGsV~~p~~~ 82 (269)
T 3myr_A 3 RPSVIWLSFQECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPDAN 82 (269)
T ss_dssp SCEEEEEECBCCSHHHHHHHHCCSSCHHHHHHHTCEEEECTTTCSSCHHHHHHHHHHHHHHTTTTCEEEEESBEECTTSC
T ss_pred CCeEEEEeCCccCchHHHHHCCCCCCHHHHHhCCeeEEechhhhhhhhHHHHHHHHHHHhcCCCCeEEEEeccCCCCcCC
Confidence 5688999999999999999999999998 3 55678888742 5689999999999 777
Q ss_pred --------hHHHHHHHHHCCCCceEEEecCccCcCCCCCCC--CccccCCCccc--cceEEccCCCCCHHHHHHHHHHHH
Q 041751 131 --------APALRKVYDQMPEPRWVISMGSRANGGGYYHYS--YSVVRGCDRIV--PVDIYVPGCPPTAEALLYGILQLQ 198 (213)
Q Consensus 131 --------~~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~s--y~~~~gv~~vV--pVDi~IPGCPP~Pe~il~~L~~Ll 198 (213)
.+.++.++|+|++||+|||+|+||++||||+.+ |+.+.|++++| +||||||||||+||+|+++|++|+
T Consensus 83 ~g~~~~gg~~~~e~l~e~~~~~k~VIA~G~CA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPp~Pe~i~~~l~~ll 162 (269)
T 3myr_A 83 PGFSTVAGHSNYSILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYL 162 (269)
T ss_dssp GGGBEETTEEHHHHHHHHHTTCSEEEEEHHHHHHCHHHHSTTCTTCEECHHHHCCSSCEEEECSSSCCHHHHHHHHHHHH
T ss_pred CccceeCChHHHHHHHHHcccCCEEEEeccccccCCccCCCCCccccCCHHHhCCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 488999999999999999999999999999765 45678999999 999999999999999999999988
Q ss_pred H-----HHhhcCCccccccC
Q 041751 199 K-----KINRRRDFLHWWTK 213 (213)
Q Consensus 199 ~-----ki~~~~~~~~~y~~ 213 (213)
. .+++.+||++||.+
T Consensus 163 ~~G~~p~Ld~~~RP~~~y~~ 182 (269)
T 3myr_A 163 VFGRLPELDGYGRPLAFYGQ 182 (269)
T ss_dssp HHSSCCCBCTTSCBHHHHSS
T ss_pred HcCCCCCCCcccCchHHhCC
Confidence 3 57899999999974
No 10
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*
Probab=100.00 E-value=1.9e-36 Score=275.15 Aligned_cols=140 Identities=16% Similarity=0.282 Sum_probs=125.5
Q ss_pred hhcCCcceecccCCccHHHHHhcCCCCcc--h-hhhcceecCC-------------------CCCeeEEEEecccCCCCh
Q 041751 74 VRRGSLWPMTFGLACCAVEMMHTGAAGYD--L-DRFGIIFRPS-------------------PRQSDVMIVAGTLTNKMA 131 (213)
Q Consensus 74 ~R~~siW~~~~gc~GC~iE~l~~~~~~~D--l-~rfgi~~~~s-------------------Pr~aDIliVeG~Vt~km~ 131 (213)
.|.+.+|++..+|+||+++|+++..|.+| + +.+.+.|+++ .+++||++|||+|+++|.
T Consensus 5 ~r~~ViWl~~~~CtGCs~SlL~~~~P~l~~lll~~I~L~yhptlm~~~G~~ae~~l~~~~~~~~~~dILlVeGsV~~~~~ 84 (335)
T 3uqy_S 5 PRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQ 84 (335)
T ss_dssp CCEEEEEEECBCCSHHHHHHHTCBTTBHHHHHHHTEEEEEETTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBCBCGGG
T ss_pred CCCcEEEEeCCccCchHHHHHCCCCCCHHHHHhcCceEeechhhhhhhhHHHHHHHHHHHhcCCCCeEEEEeccCCCCCC
Confidence 46789999999999999999999999998 3 5567788873 257899999999999998
Q ss_pred ---------HHHHHHHHHCCCCceEEEecCccCcCCCCCCCC--ccccCCCcccc--ceEEccCCCCCHHHHHHHHHHHH
Q 041751 132 ---------PALRKVYDQMPEPRWVISMGSRANGGGYYHYSY--SVVRGCDRIVP--VDIYVPGCPPTAEALLYGILQLQ 198 (213)
Q Consensus 132 ---------~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~sy--~~~~gv~~vVp--VDi~IPGCPP~Pe~il~~L~~Ll 198 (213)
+.++++||+|++||+|||+|+||++||||+.+| +.+.||+++|+ ||||||||||+||+|+++|++|+
T Consensus 85 G~y~~~gg~~~l~~l~e~~~~ak~VIAvGsCA~~GGi~a~~~npt~~~gv~~vi~~~~di~IPGCPP~Pe~i~~~l~~ll 164 (335)
T 3uqy_S 85 GMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 164 (335)
T ss_dssp GTTBEETTEEHHHHHHHHHHHEEEEEEEHHHHHTCHHHHSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHH
T ss_pred cceeccCCcHHHHHHHHHccCCCEEEEeccccccCCccCCCCCcccCcCHHHhCCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 889999999999999999999999999998754 56889999998 79999999999999999999976
Q ss_pred H-----HHhhcCCccccccC
Q 041751 199 K-----KINRRRDFLHWWTK 213 (213)
Q Consensus 199 ~-----ki~~~~~~~~~y~~ 213 (213)
. .+++.+||++||.+
T Consensus 165 ~~G~~p~LD~~~RP~~~y~~ 184 (335)
T 3uqy_S 165 TFDRLPDVDRMGRPLMFYGQ 184 (335)
T ss_dssp HHTSCCCBCTTSCBHHHHSS
T ss_pred hCCCCCCCCccCCchhhhCC
Confidence 3 46899999999974
No 11
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}
Probab=100.00 E-value=5.5e-36 Score=272.40 Aligned_cols=140 Identities=18% Similarity=0.312 Sum_probs=125.3
Q ss_pred hhcCCcceecccCCccHHHHHhcCCCCcc--h-hhhcceecCC-------------------CCCeeEEEEecccCCCC-
Q 041751 74 VRRGSLWPMTFGLACCAVEMMHTGAAGYD--L-DRFGIIFRPS-------------------PRQSDVMIVAGTLTNKM- 130 (213)
Q Consensus 74 ~R~~siW~~~~gc~GC~iE~l~~~~~~~D--l-~rfgi~~~~s-------------------Pr~aDIliVeG~Vt~km- 130 (213)
.|.+.+|++..+|+||+++|+++..|.+| + +.+.+.|+++ ++++||++|||+|+++|
T Consensus 5 ~r~~ViWl~~~~CtGCt~SlL~~~~P~l~~ll~~~I~L~yhptlm~~~G~~a~~~l~~~~~~~~~~dILlVEGsV~~~~~ 84 (339)
T 3rgw_S 5 PRTPVLWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDYDDTLMAAAGHQAEAILEEIMTKYKGNYILAVEGNPPLNQD 84 (339)
T ss_dssp CCEEEEEEECBCCSHHHHHHTTCBTTBHHHHHHHTEEEEEETTTCSCCHHHHHHHHHHHHHHTTTCSEEEEESBCBCSGG
T ss_pred CCCcEEEEECCcCCchHHHHHcCCCCCHHHHHhCCeeEEecchhhhhhhHHHHHHHHHHHhccCCCcEEEEeeeccCCCC
Confidence 46789999999999999999999999887 2 5567788873 36789999999999999
Q ss_pred --------hHHHHHHHHHCCCCceEEEecCccCcCCCCCCCC--ccccCCCcccc--ceEEccCCCCCHHHHHHHHHHHH
Q 041751 131 --------APALRKVYDQMPEPRWVISMGSRANGGGYYHYSY--SVVRGCDRIVP--VDIYVPGCPPTAEALLYGILQLQ 198 (213)
Q Consensus 131 --------~~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~sy--~~~~gv~~vVp--VDi~IPGCPP~Pe~il~~L~~Ll 198 (213)
.+.++++||+|++||+|||+|+||++||||+.+| +...|++++|+ ||||||||||+||+|+++|++|+
T Consensus 85 g~y~~~gg~~~~e~l~e~~~~~k~VIAvGtCA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPP~Pe~i~~~l~~ll 164 (339)
T 3rgw_S 85 GMSCIIGGRPFIEQLKYVAKDAKAIISWGSCASWGCVQAAKPNPTQATPVHKVITDKPIIKVPGCPPIAEVMTGVITYML 164 (339)
T ss_dssp GTTBEETTEEHHHHHHHHHTTCSEEEEEHHHHHTCTGGGSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHH
T ss_pred cceeccCChHHHHHHHHHccCCCEEEEeccccccCCcCCCCCCccccCCHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999998654 56789999998 99999999999999999999988
Q ss_pred H-----HHhhcCCccccccC
Q 041751 199 K-----KINRRRDFLHWWTK 213 (213)
Q Consensus 199 ~-----ki~~~~~~~~~y~~ 213 (213)
. .|++.+||++||.+
T Consensus 165 ~~G~~p~LD~~~RP~~fy~~ 184 (339)
T 3rgw_S 165 TFDRIPELDRQGRPKMFYSQ 184 (339)
T ss_dssp HHSSCCCBCTTSCBHHHHSS
T ss_pred hcCCCCCCCcccCchhhhCC
Confidence 3 57899999999974
No 12
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=63.92 E-value=1.9 Score=34.17 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=19.2
Q ss_pred cceEEccCCCCCHHHHHHHHH----HHHHHHhhc
Q 041751 175 PVDIYVPGCPPTAEALLYGIL----QLQKKINRR 204 (213)
Q Consensus 175 pVDi~IPGCPP~Pe~il~~L~----~Ll~ki~~~ 204 (213)
+| +.+||+|-.....++.++ +++..++..
T Consensus 124 ~v-~~LPG~P~~~~~~~~~v~p~l~~~~~~~~~~ 156 (164)
T 2is8_A 124 LI-LNLPGSPKGARESLEAVLPVLPHALSLVTGK 156 (164)
T ss_dssp EE-EEECSSHHHHHHHHHHHGGGHHHHHHHHHCC
T ss_pred EE-EECCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44 899999998877666543 344455543
No 13
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=57.81 E-value=4.2 Score=32.24 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=15.3
Q ss_pred cceEEccCCCCCHHHHHHHHH
Q 041751 175 PVDIYVPGCPPTAEALLYGIL 195 (213)
Q Consensus 175 pVDi~IPGCPP~Pe~il~~L~ 195 (213)
+| +.+||+|-.....++.+.
T Consensus 135 ~v-~~LPG~P~~~~~~~~~v~ 154 (167)
T 2g2c_A 135 LI-VNAPSSSGGITDTWAVIS 154 (167)
T ss_dssp EE-EEECSSHHHHHHHHHHHG
T ss_pred EE-EECCCCHHHHHHHHHHHH
Confidence 45 999999988888777443
No 14
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=57.63 E-value=4.8 Score=32.36 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=15.1
Q ss_pred EEccCCCCCHHHHHHHH
Q 041751 178 IYVPGCPPTAEALLYGI 194 (213)
Q Consensus 178 i~IPGCPP~Pe~il~~L 194 (213)
+.+||+|-.....++.+
T Consensus 132 ~~LPG~P~~~~~~~~~~ 148 (178)
T 2pbq_A 132 VNLPGKPQSIKVCLDAV 148 (178)
T ss_dssp EEECSSHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHH
Confidence 89999999988888876
No 15
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=56.55 E-value=51 Score=23.46 Aligned_cols=79 Identities=8% Similarity=0.100 Sum_probs=44.2
Q ss_pred CeeEEEEecccCCCC-hHHHHHHHHHCCCCceEEEecCccCcCCCCCCCCccccCCCccccceEEccCCCCCHHHHHHHH
Q 041751 116 QSDVMIVAGTLTNKM-APALRKVYDQMPEPRWVISMGSRANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI 194 (213)
Q Consensus 116 ~aDIliVeG~Vt~km-~~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~sy~~~~gv~~vVpVDi~IPGCPP~Pe~il~~L 194 (213)
+.|++|+.=..+... ...++++++..++.++|+- .+-....-. ....-.|+++++.. |.+++.|...|
T Consensus 49 ~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~l-s~~~~~~~~---~~~~~~ga~~~l~K-------P~~~~~L~~~i 117 (141)
T 3cu5_A 49 PPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFM-SGYSDKEYL---KAAIKFRAIRYVEK-------PIDPSEIMDAL 117 (141)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE-CCSTTTCCC---------CCCEEECS-------SCCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE-eCCCcHHHH---HHHHhCCccEEEeC-------CCCHHHHHHHH
Confidence 468888876665432 3557777777776665553 322111111 01112344444433 77999999999
Q ss_pred HHHHHHHhhcC
Q 041751 195 LQLQKKINRRR 205 (213)
Q Consensus 195 ~~Ll~ki~~~~ 205 (213)
..+++...+.+
T Consensus 118 ~~~~~~~~~~~ 128 (141)
T 3cu5_A 118 KQSIQTVLQHQ 128 (141)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 98887665433
No 16
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=52.60 E-value=4.3 Score=32.26 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=13.7
Q ss_pred cceEEccCCCCCHHHHHH
Q 041751 175 PVDIYVPGCPPTAEALLY 192 (213)
Q Consensus 175 pVDi~IPGCPP~Pe~il~ 192 (213)
+| +.+||+|-.....++
T Consensus 136 ~v-~~LPG~P~~~~~~~~ 152 (169)
T 1y5e_A 136 VV-FSMPGSSGAVRLAMN 152 (169)
T ss_dssp EE-EEECSSHHHHHHHHH
T ss_pred EE-EECCCCHHHHHHHHH
Confidence 44 899999998877766
No 17
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=46.30 E-value=5.9 Score=32.60 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=14.5
Q ss_pred cceEEccCCCCCHHHHHHH
Q 041751 175 PVDIYVPGCPPTAEALLYG 193 (213)
Q Consensus 175 pVDi~IPGCPP~Pe~il~~ 193 (213)
+| +++||+|-.....++.
T Consensus 128 ~v-~~LPG~P~a~~~~~~~ 145 (195)
T 1di6_A 128 LI-LNLPGQPKSIKETLEG 145 (195)
T ss_dssp EE-EEECSSHHHHHHHHHE
T ss_pred EE-EECCCCHHHHHHHHHH
Confidence 44 9999999988877665
No 18
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=43.74 E-value=6.2 Score=31.42 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=18.9
Q ss_pred cceEEccCCCCCHHHHHHHHH----HHHHHHhhcC
Q 041751 175 PVDIYVPGCPPTAEALLYGIL----QLQKKINRRR 205 (213)
Q Consensus 175 pVDi~IPGCPP~Pe~il~~L~----~Ll~ki~~~~ 205 (213)
+| +.+||+|.....-++.+. ++++.++..+
T Consensus 128 ~v-~~LPG~P~aa~~~~~~v~P~l~~~~~~~~g~~ 161 (164)
T 3pzy_A 128 LI-VNLPGSPGGVRDGLGVLAGVLDHALDQLAGKD 161 (164)
T ss_dssp EE-EEECSSHHHHHHHHHHHHTTHHHHHHHHTTC-
T ss_pred EE-EECCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45 999999998776666333 3444555443
No 19
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=43.18 E-value=6 Score=31.93 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=13.8
Q ss_pred cceEEccCCCCCHHHHHH
Q 041751 175 PVDIYVPGCPPTAEALLY 192 (213)
Q Consensus 175 pVDi~IPGCPP~Pe~il~ 192 (213)
+| +.+||+|-....-++
T Consensus 146 ~v-~~LPG~P~aa~~~~~ 162 (178)
T 2pjk_A 146 IV-YLLPGSPDAVKLALK 162 (178)
T ss_dssp EE-EEECSCHHHHHHHHH
T ss_pred EE-EECCCCcHHHHHHHH
Confidence 45 999999988877666
No 20
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=42.05 E-value=16 Score=29.33 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=29.5
Q ss_pred CCCeeEEEEecccCCCC--hHHHHHHHHHCCCCceEEEecCc
Q 041751 114 PRQSDVMIVAGTLTNKM--APALRKVYDQMPEPRWVISMGSR 153 (213)
Q Consensus 114 Pr~aDIliVeG~Vt~km--~~~l~~l~e~~~~pk~VIA~GsC 153 (213)
+.++|++||-|...... ...++.++++.++.|+|.|+++=
T Consensus 69 ~~~~D~livpGG~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G 110 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKYPELDRLLNDCAAHGMALGGLWNG 110 (202)
T ss_dssp GTTCSEEEEECCTTCCSCCTTHHHHHHHHHHHTCEEEEETTH
T ss_pred CCCCCEEEEeCCCchhhccHHHHHHHHHHHhhCCEEEEECHH
Confidence 45789999988764322 45667777888889999998763
No 21
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=41.17 E-value=13 Score=28.61 Aligned_cols=41 Identities=7% Similarity=0.060 Sum_probs=29.0
Q ss_pred CCCeeEEEEecc--c--CCC------ChHHHHHHHHHCCCCceEEEecCcc
Q 041751 114 PRQSDVMIVAGT--L--TNK------MAPALRKVYDQMPEPRWVISMGSRA 154 (213)
Q Consensus 114 Pr~aDIliVeG~--V--t~k------m~~~l~~l~e~~~~pk~VIA~GsCA 154 (213)
+.++|+++|-|. . ... ....++.++++.++-|+|.|+++=+
T Consensus 64 ~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~ 114 (175)
T 3cne_A 64 EDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGA 114 (175)
T ss_dssp GGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHH
T ss_pred cccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHH
Confidence 357899999987 4 211 2345666777888899999987644
No 22
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=40.08 E-value=28 Score=29.28 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=30.5
Q ss_pred CCCeeEEEEeccc-C----CCChHHHHHHHHHCCCCceEEEecCc
Q 041751 114 PRQSDVMIVAGTL-T----NKMAPALRKVYDQMPEPRWVISMGSR 153 (213)
Q Consensus 114 Pr~aDIliVeG~V-t----~km~~~l~~l~e~~~~pk~VIA~GsC 153 (213)
+..+|++||-|.. . .+....++.++++.++.|+|.|+++=
T Consensus 82 ~~~yD~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG 126 (253)
T 3ewn_A 82 PRDLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSG 126 (253)
T ss_dssp CSSCSEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTH
T ss_pred CCCCCEEEECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChH
Confidence 3456999999876 2 23456778888899999999998764
No 23
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=38.07 E-value=1e+02 Score=21.60 Aligned_cols=81 Identities=10% Similarity=-0.046 Sum_probs=45.9
Q ss_pred CCeeEEEEecccCC--CChHHHHHHHHHCCCCceEEEecCccCcCCCCCCCCccccCCCccccceEEccCCCCCHHHHHH
Q 041751 115 RQSDVMIVAGTLTN--KMAPALRKVYDQMPEPRWVISMGSRANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLY 192 (213)
Q Consensus 115 r~aDIliVeG~Vt~--km~~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~sy~~~~gv~~vVpVDi~IPGCPP~Pe~il~ 192 (213)
.+.|++|+.=.++. .....++.+++. ++.++|+--+. ....-.. .....|+++ ||. =|-+++.|..
T Consensus 49 ~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii~ls~~-~~~~~~~---~~~~~g~~~------~l~-KP~~~~~l~~ 116 (140)
T 3h5i_A 49 WYPDLILMDIELGEGMDGVQTALAIQQI-SELPVVFLTAH-TEPAVVE---KIRSVTAYG------YVM-KSATEQVLIT 116 (140)
T ss_dssp CCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEEEEESS-SSCCCCG---GGGGSCEEE------EEE-TTCCHHHHHH
T ss_pred CCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEEEEECC-CCHHHHH---HHHhCCCcE------EEe-CCCCHHHHHH
Confidence 35689998877753 233566777765 66665544332 1111000 001123333 333 2789999999
Q ss_pred HHHHHHHHHhhcCCc
Q 041751 193 GILQLQKKINRRRDF 207 (213)
Q Consensus 193 ~L~~Ll~ki~~~~~~ 207 (213)
.|..++++.++.+..
T Consensus 117 ~i~~~l~~~~~~~~~ 131 (140)
T 3h5i_A 117 IVEMALRLYEANVHA 131 (140)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhcCC
Confidence 999998877765543
No 24
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=37.45 E-value=6.9 Score=31.90 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=12.5
Q ss_pred CeeEEEEecccCCCC
Q 041751 116 QSDVMIVAGTLTNKM 130 (213)
Q Consensus 116 ~aDIliVeG~Vt~km 130 (213)
++|++|++|.+....
T Consensus 78 ~~DlVIttGGtg~g~ 92 (189)
T 1jlj_A 78 ELNLILTTGGTGFAP 92 (189)
T ss_dssp CCSEEEEESCCSSST
T ss_pred CCCEEEEcCCCCCCC
Confidence 689999999987654
No 25
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=36.42 E-value=29 Score=27.94 Aligned_cols=39 Identities=3% Similarity=0.072 Sum_probs=29.3
Q ss_pred CCeeEEEEecccC------CCChHHHHHHHHHCCCCceEEEecCc
Q 041751 115 RQSDVMIVAGTLT------NKMAPALRKVYDQMPEPRWVISMGSR 153 (213)
Q Consensus 115 r~aDIliVeG~Vt------~km~~~l~~l~e~~~~pk~VIA~GsC 153 (213)
.++|++||-|... .+....++.++++.++-|+|.|+++=
T Consensus 73 ~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G 117 (209)
T 3er6_A 73 DFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTG 117 (209)
T ss_dssp SCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTH
T ss_pred CCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHH
Confidence 4689999988753 22455677788888899999998753
No 26
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=36.13 E-value=73 Score=22.28 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=47.3
Q ss_pred CCeeEEEEecccCCCCh-HHHHHHHHHCCCCceEEEecCccCcCCCCCCCCccccCCCccccceEEccCCCCCHHHHHHH
Q 041751 115 RQSDVMIVAGTLTNKMA-PALRKVYDQMPEPRWVISMGSRANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG 193 (213)
Q Consensus 115 r~aDIliVeG~Vt~km~-~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~sy~~~~gv~~vVpVDi~IPGCPP~Pe~il~~ 193 (213)
.+.|++|+.-.++.... ..++.+++..++.++|+--+.- ...-. ....-.|+++++.. |-+++.|...
T Consensus 48 ~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~-~~~~~---~~~~~~g~~~~l~k-------p~~~~~l~~~ 116 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHG-DLDNA---ILAMKEGAFEYLRK-------PVTAQDLSIA 116 (143)
T ss_dssp TTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTT-CHHHH---HHHHHTTCSEEEES-------SCCHHHHHHH
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCC-CHHHH---HHHHHhCcceeEeC-------CCCHHHHHHH
Confidence 45789998877765443 5677788877777766543211 00000 00011344444433 7799999999
Q ss_pred HHHHHHHHhhcC
Q 041751 194 ILQLQKKINRRR 205 (213)
Q Consensus 194 L~~Ll~ki~~~~ 205 (213)
|..++++-+..+
T Consensus 117 l~~~~~~~~~~~ 128 (143)
T 3jte_A 117 INNAINRKKLLM 128 (143)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999887554443
No 27
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=35.79 E-value=34 Score=28.12 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=29.9
Q ss_pred CCeeEEEEecccCC----CChHHHHHHHHHCCCCceEEEecCc
Q 041751 115 RQSDVMIVAGTLTN----KMAPALRKVYDQMPEPRWVISMGSR 153 (213)
Q Consensus 115 r~aDIliVeG~Vt~----km~~~l~~l~e~~~~pk~VIA~GsC 153 (213)
.++|+++|-|.... .....++.++++.++.|+|.++++=
T Consensus 64 ~~~D~livpGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G 106 (231)
T 3noq_A 64 PPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTG 106 (231)
T ss_dssp CCCSEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTH
T ss_pred CcCCEEEECCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHH
Confidence 46899999987422 3345677888899999999998764
No 28
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=35.68 E-value=1.2e+02 Score=21.62 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=45.4
Q ss_pred CeeEEEEecccCCCC-hHHHHHHHHHCCCCceEEEecCccCcCCCCCCCCccccC-CCccccceEEccCCCCCHHHHHHH
Q 041751 116 QSDVMIVAGTLTNKM-APALRKVYDQMPEPRWVISMGSRANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALLYG 193 (213)
Q Consensus 116 ~aDIliVeG~Vt~km-~~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~sy~~~~g-v~~vVpVDi~IPGCPP~Pe~il~~ 193 (213)
+.|++|+.=.++... ...++++++..++.++|+--+.. ...-. ....-.| +++++ .- |-+++.|...
T Consensus 58 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~---~~~~~~g~~~~~l------~K-P~~~~~l~~~ 126 (153)
T 3hv2_A 58 EVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDP-DLKLI---AKAINEGEIYRYL------SK-PWDDQELLLA 126 (153)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCC-CHHHH---HHHHHTTCCSEEE------CS-SCCHHHHHHH
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCC-CHHHH---HHHHhCCCcceEE------eC-CCCHHHHHHH
Confidence 457888877766543 35677788877777766543211 00000 0000122 44443 33 8899999999
Q ss_pred HHHHHHHHhhcC
Q 041751 194 ILQLQKKINRRR 205 (213)
Q Consensus 194 L~~Ll~ki~~~~ 205 (213)
|..+++..+..+
T Consensus 127 i~~~l~~~~~~~ 138 (153)
T 3hv2_A 127 LRQALEHQHSER 138 (153)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHh
Confidence 999887554433
No 29
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=35.60 E-value=28 Score=28.15 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=30.1
Q ss_pred CCCeeEEEEecccCC--CChHHHHHHHHHCCCCceEEEecCc
Q 041751 114 PRQSDVMIVAGTLTN--KMAPALRKVYDQMPEPRWVISMGSR 153 (213)
Q Consensus 114 Pr~aDIliVeG~Vt~--km~~~l~~l~e~~~~pk~VIA~GsC 153 (213)
+.++|+++|-|.... .....++.++++.++-|+|.|+++=
T Consensus 61 ~~~~D~livpGG~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G 102 (206)
T 3f5d_A 61 PANFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAICGA 102 (206)
T ss_dssp CSCCSEEEECCBSCCCCCCHHHHHHHHHHHHTTCCEEEETHH
T ss_pred CcCCCEEEEcCCCChhhcCHHHHHHHHHHHHcCCEEEEECHH
Confidence 457899999887532 3455677778888899999998763
No 30
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=34.68 E-value=1.1e+02 Score=21.12 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=44.4
Q ss_pred CeeEEEEecccCCCC-hHHHHHHHH--HCCCCceEEEecCccCcCCCCCCCCccccCCCccccceEEccCCCCCHHHHHH
Q 041751 116 QSDVMIVAGTLTNKM-APALRKVYD--QMPEPRWVISMGSRANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLY 192 (213)
Q Consensus 116 ~aDIliVeG~Vt~km-~~~l~~l~e--~~~~pk~VIA~GsCA~~GGi~~~sy~~~~gv~~vVpVDi~IPGCPP~Pe~il~ 192 (213)
+.|++|+.-..+... ...++.+++ ..++..+|+ +.+-....-. ...+. ..++-||.- |-+++.|..
T Consensus 51 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~-~s~~~~~~~~-------~~~~~--~g~~~~l~k-p~~~~~l~~ 119 (142)
T 3cg4_A 51 FSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVM-LTAKNAPDAK-------MIGLQ--EYVVDYITK-PFDNEDLIE 119 (142)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEE-EECTTCCCCS-------STTGG--GGEEEEEES-SCCHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEE-EECCCCHHHH-------HHHHh--cCccEEEeC-CCCHHHHHH
Confidence 468999887666533 245666766 344444444 3322111100 01111 124444544 889999999
Q ss_pred HHHHHHHHHhhcCC
Q 041751 193 GILQLQKKINRRRD 206 (213)
Q Consensus 193 ~L~~Ll~ki~~~~~ 206 (213)
.|..+++..+....
T Consensus 120 ~i~~~~~~~~~~~~ 133 (142)
T 3cg4_A 120 KTTFFMGFVRNQTG 133 (142)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhccc
Confidence 99999987776554
No 31
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=34.50 E-value=35 Score=27.27 Aligned_cols=41 Identities=7% Similarity=0.050 Sum_probs=30.0
Q ss_pred CCCeeEEEEecccCC-----CChHHHHHHHHHCCCCceEEEecCcc
Q 041751 114 PRQSDVMIVAGTLTN-----KMAPALRKVYDQMPEPRWVISMGSRA 154 (213)
Q Consensus 114 Pr~aDIliVeG~Vt~-----km~~~l~~l~e~~~~pk~VIA~GsCA 154 (213)
+.++|+++|-|.... .....++.++++.++-|+|.|+++=+
T Consensus 87 ~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~ 132 (224)
T 1u9c_A 87 AHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGP 132 (224)
T ss_dssp GSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGG
T ss_pred hhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHH
Confidence 357899999987532 23456677778888999999988644
No 32
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=34.41 E-value=20 Score=27.90 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=28.7
Q ss_pred CCeeEEEEecccC-----CCChHHHHHHHHHCCCCceEEEecCcc
Q 041751 115 RQSDVMIVAGTLT-----NKMAPALRKVYDQMPEPRWVISMGSRA 154 (213)
Q Consensus 115 r~aDIliVeG~Vt-----~km~~~l~~l~e~~~~pk~VIA~GsCA 154 (213)
.++|++||-|... ......++.++++.++-|+|.++++=+
T Consensus 74 ~~~D~livpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~ 118 (190)
T 2vrn_A 74 SDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGP 118 (190)
T ss_dssp GGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTT
T ss_pred hhCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhH
Confidence 5789999999751 234456777788888899999886643
No 33
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=34.02 E-value=36 Score=30.91 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=38.3
Q ss_pred CeeEEEEecccCCCChHHHHHHHHHCCCCceEEEecCccCcCCCCCCCCccccCCCccccceEEccCCCCCHHHHHHH-H
Q 041751 116 QSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSRANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG-I 194 (213)
Q Consensus 116 ~aDIliVeG~Vt~km~~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~sy~~~~gv~~vVpVDi~IPGCPP~Pe~il~~-L 194 (213)
++|++|++|.+..........+.+... + ++-.|----=|. +....-++. .+| +.+||||-.....++. +
T Consensus 246 ~~DlVittGG~s~g~~D~t~~al~~~G--~-~~f~~va~~PG~-----p~~~g~~~~-~~v-~~LPG~P~sa~~~~~~~v 315 (402)
T 1uz5_A 246 VGDVVVISGGASGGTKDLTASVIEELG--E-VKVHGIAIQPGK-----PTIIGVIKG-KPV-FGLPGYPTSCLTNFTLLV 315 (402)
T ss_dssp HCSEEEEECCC-----CHHHHHHHHHS--E-EEEECBSEESCT-----TCEEEEETT-EEE-EEECSSHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCcccHHHHHHhhC--C-EEEeeEeecCCC-----CEEEEEECC-EEE-EECCCCHHHHHHHHHHHH
Confidence 479999999988776655555444332 2 222221100011 111111111 245 8999999999877775 4
Q ss_pred HHHHHHHhh
Q 041751 195 LQLQKKINR 203 (213)
Q Consensus 195 ~~Ll~ki~~ 203 (213)
.-++.++..
T Consensus 316 ~P~L~~~~g 324 (402)
T 1uz5_A 316 VPLLLRALG 324 (402)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 446666544
No 34
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=33.62 E-value=92 Score=21.72 Aligned_cols=77 Identities=6% Similarity=0.032 Sum_probs=40.8
Q ss_pred CeeEEEEecccCCCCh-HHHHHHHHHCCCCceEEEecCccCcCCCCCCCCccccCCCccccceEEccCCCCCHHHHHHHH
Q 041751 116 QSDVMIVAGTLTNKMA-PALRKVYDQMPEPRWVISMGSRANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI 194 (213)
Q Consensus 116 ~aDIliVeG~Vt~km~-~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~sy~~~~gv~~vVpVDi~IPGCPP~Pe~il~~L 194 (213)
+.|++|+.=.++.... ..++.+++..+.+.+ |.+.+- ... . .-..-.|++ -||.- |-+++.|...|
T Consensus 55 ~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i-i~~s~~---~~~-~-~~~~~~g~~------~~l~K-P~~~~~l~~~i 121 (143)
T 2qv0_A 55 KVDAIFLDINIPSLDGVLLAQNISQFAHKPFI-VFITAW---KEH-A-VEAFELEAF------DYILK-PYQESRIINML 121 (143)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHTTSTTCCEE-EEEESC---CTT-H-HHHHHTTCS------EEEES-SCCHHHHHHHH
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHccCCCceE-EEEeCC---HHH-H-HHHHhCCcc------eEEeC-CCCHHHHHHHH
Confidence 3678888766654332 344555543344444 444321 110 0 000112333 33433 78999999999
Q ss_pred HHHHHHHhhcC
Q 041751 195 LQLQKKINRRR 205 (213)
Q Consensus 195 ~~Ll~ki~~~~ 205 (213)
..+++..++.+
T Consensus 122 ~~~~~~~~~~~ 132 (143)
T 2qv0_A 122 QKLTTAWEQQN 132 (143)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99988776554
No 35
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=33.30 E-value=12 Score=30.67 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=13.4
Q ss_pred CCeeEEEEecccCCCCh
Q 041751 115 RQSDVMIVAGTLTNKMA 131 (213)
Q Consensus 115 r~aDIliVeG~Vt~km~ 131 (213)
.++|++|++|.+.....
T Consensus 88 ~~~DlVIttGGts~g~~ 104 (185)
T 3rfq_A 88 GGVDLVVSVGGTGVTPR 104 (185)
T ss_dssp TTCSEEEEESCCSSSTT
T ss_pred CCCCEEEECCCCCCCCc
Confidence 46899999998876553
No 36
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=31.36 E-value=27 Score=26.53 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=28.4
Q ss_pred CCeeEEEEecccCC----CChHHHHHHHHHCCCCceEEEecCc
Q 041751 115 RQSDVMIVAGTLTN----KMAPALRKVYDQMPEPRWVISMGSR 153 (213)
Q Consensus 115 r~aDIliVeG~Vt~----km~~~l~~l~e~~~~pk~VIA~GsC 153 (213)
.++|+++|-|.... +....++.++++.++-|.|.++++=
T Consensus 62 ~~~D~livpGG~~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G 104 (168)
T 3l18_A 62 DEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHG 104 (168)
T ss_dssp GGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTT
T ss_pred hhCCEEEECCCcCHHHhccCHHHHHHHHHHHHCCCEEEEECHh
Confidence 46899999987521 2345567777888899999988663
No 37
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=31.10 E-value=21 Score=28.15 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=29.9
Q ss_pred CCCeeEEEEecccC-C----CChHHHHHHHHHCCCCceEEEecCcc
Q 041751 114 PRQSDVMIVAGTLT-N----KMAPALRKVYDQMPEPRWVISMGSRA 154 (213)
Q Consensus 114 Pr~aDIliVeG~Vt-~----km~~~l~~l~e~~~~pk~VIA~GsCA 154 (213)
+.++|+++|-|... . .....++.++++.++-|+|.|+++=+
T Consensus 64 ~~~~D~livpGG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~ 109 (197)
T 2rk3_A 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGP 109 (197)
T ss_dssp TCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH
T ss_pred ccCCCEEEECCCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 46789999999752 1 13445677778888999999987654
No 38
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=30.04 E-value=33 Score=27.57 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=30.0
Q ss_pred CCCeeEEEEecccCCCC---hHHHHHHHHHCCCCceEEEecCcc
Q 041751 114 PRQSDVMIVAGTLTNKM---APALRKVYDQMPEPRWVISMGSRA 154 (213)
Q Consensus 114 Pr~aDIliVeG~Vt~km---~~~l~~l~e~~~~pk~VIA~GsCA 154 (213)
+.++|+++|-|...... ...++.++++.++-|+|.|+++=+
T Consensus 72 ~~~~D~livpGG~~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~ 115 (212)
T 3efe_A 72 LESKDLLILPGGTTWSEEIHQPILERIGQALKIGTIVAAICGAT 115 (212)
T ss_dssp CCTTCEEEECCCSCTTSGGGHHHHHHHHHHHHHTCEEEEETHHH
T ss_pred ccCCCEEEECCCCccccccCHHHHHHHHHHHHCCCEEEEEcHHH
Confidence 45789999988754332 345667778888899999987643
No 39
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=29.46 E-value=39 Score=26.83 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=28.2
Q ss_pred CCCCeeEEEEecccCC----CChHHHHHHHHHCCCCceEEEecC
Q 041751 113 SPRQSDVMIVAGTLTN----KMAPALRKVYDQMPEPRWVISMGS 152 (213)
Q Consensus 113 sPr~aDIliVeG~Vt~----km~~~l~~l~e~~~~pk~VIA~Gs 152 (213)
.+.++|+++|-|.... +....++.++++..+-|+|.|+++
T Consensus 66 ~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~ 109 (177)
T 4hcj_A 66 DAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGS 109 (177)
T ss_dssp CGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETT
T ss_pred CHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEecc
Confidence 3567899999886432 223456667777788999998854
No 40
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=29.14 E-value=22 Score=28.55 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=30.9
Q ss_pred CCCeeEEEEecccC-----CCChHHHHHHHHHCCCCceEEEecCcc
Q 041751 114 PRQSDVMIVAGTLT-----NKMAPALRKVYDQMPEPRWVISMGSRA 154 (213)
Q Consensus 114 Pr~aDIliVeG~Vt-----~km~~~l~~l~e~~~~pk~VIA~GsCA 154 (213)
+.++|+++|-|... .+....++.++++.++-|+|.|+++=+
T Consensus 69 ~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~ 114 (208)
T 3ot1_A 69 AEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATP 114 (208)
T ss_dssp GGGCSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHH
T ss_pred CcCCCEEEECCCchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhH
Confidence 35789999998752 134456777888888999999998765
No 41
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=28.30 E-value=24 Score=27.63 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=29.7
Q ss_pred CCCeeEEEEecccC-C----CChHHHHHHHHHCCCCceEEEecCcc
Q 041751 114 PRQSDVMIVAGTLT-N----KMAPALRKVYDQMPEPRWVISMGSRA 154 (213)
Q Consensus 114 Pr~aDIliVeG~Vt-~----km~~~l~~l~e~~~~pk~VIA~GsCA 154 (213)
+.++|+++|-|... . +....++.++++.++-|+|.|+++=+
T Consensus 65 ~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~ 110 (190)
T 4e08_A 65 SDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAP 110 (190)
T ss_dssp TCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH
T ss_pred cccCCEEEECCCChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHH
Confidence 45789999998742 1 23345667778888999999987754
No 42
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=27.81 E-value=69 Score=29.07 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=43.1
Q ss_pred CeeEEEEecccCCCChHHHHHHH-HHCCCCceEEEecCccCcCCCCCC--CCcccc--CCC-ccccceEEccCCCCCHHH
Q 041751 116 QSDVMIVAGTLTNKMAPALRKVY-DQMPEPRWVISMGSRANGGGYYHY--SYSVVR--GCD-RIVPVDIYVPGCPPTAEA 189 (213)
Q Consensus 116 ~aDIliVeG~Vt~km~~~l~~l~-e~~~~pk~VIA~GsCA~~GGi~~~--sy~~~~--gv~-~vVpVDi~IPGCPP~Pe~ 189 (213)
++|++|++|.+........+.+. +... .+.+ ++|+.-. .+.... +++ .-.+| +.+||+|-....
T Consensus 247 ~~DlVittGG~s~g~~D~t~~al~~~lg-~~~~--------f~~v~~~PG~p~~~g~~~~~~~~~~v-~~LPG~P~sa~~ 316 (419)
T 2fts_A 247 RADVIITSGGVSMGEKDYLKQVLDIDLH-AQIH--------FGRVFMKPGLPTTFATLDIDGVRKII-FALPGNPVSAVV 316 (419)
T ss_dssp HCSEEEEESCCSSSCCHHHHHHHHTTTC-CEEE--------ESEEECBSCTTCEEEEEEETTEEEEE-EEECSSHHHHHH
T ss_pred cCCEEEEcCCCcCCCcccHHHHHHHHcC-CceE--------EeEEecCCCCceEEEEEeecCCCeEE-EECCCCHHHHHH
Confidence 47999999999988776666665 2221 1222 2333210 111111 111 01244 899999998887
Q ss_pred HHHH-HHHHHHHHhh
Q 041751 190 LLYG-ILQLQKKINR 203 (213)
Q Consensus 190 il~~-L~~Ll~ki~~ 203 (213)
.++. +.-++.++..
T Consensus 317 ~~~~~v~P~L~~~~g 331 (419)
T 2fts_A 317 TCNLFVVPALRKMQG 331 (419)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC
Confidence 7773 4445555543
No 43
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=27.03 E-value=25 Score=28.67 Aligned_cols=41 Identities=12% Similarity=-0.036 Sum_probs=28.8
Q ss_pred CCCeeEEEEecccCC---------------CChHHHHHHHHHCCCCceEEEecCcc
Q 041751 114 PRQSDVMIVAGTLTN---------------KMAPALRKVYDQMPEPRWVISMGSRA 154 (213)
Q Consensus 114 Pr~aDIliVeG~Vt~---------------km~~~l~~l~e~~~~pk~VIA~GsCA 154 (213)
+.++|+++|-|.... .....++.++++.++-|+|.|+++=+
T Consensus 88 ~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~ 143 (232)
T 1vhq_A 88 AAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAP 143 (232)
T ss_dssp GGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGG
T ss_pred cccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 457899999997532 13445666777777889999987543
No 44
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=25.68 E-value=88 Score=21.65 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=44.9
Q ss_pred CeeEEEEecccCCCCh-HHHHHHHHHCCCCceEEEecCccCcCCCCCCCCccccCCCccccceEEccCCCCCHHHHHHHH
Q 041751 116 QSDVMIVAGTLTNKMA-PALRKVYDQMPEPRWVISMGSRANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI 194 (213)
Q Consensus 116 ~aDIliVeG~Vt~km~-~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~sy~~~~gv~~vVpVDi~IPGCPP~Pe~il~~L 194 (213)
+.|++|+.-..+.... +.++.+++..++..+++ +.+-....-. ....-.|+++++.. |-+++.|...|
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~-~s~~~~~~~~---~~~~~~g~~~~l~k-------P~~~~~l~~~i 119 (137)
T 3hdg_A 51 APDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIV-ISAFSEMKYF---IKAIELGVHLFLPK-------PIEPGRLMETL 119 (137)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEE-CCCCCCHHHH---HHHHHHCCSEECCS-------SCCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE-EecCcChHHH---HHHHhCCcceeEcC-------CCCHHHHHHHH
Confidence 3578888877665443 55777777766666444 3221100000 00011344444433 77999999999
Q ss_pred HHHHHHHhhcCC
Q 041751 195 LQLQKKINRRRD 206 (213)
Q Consensus 195 ~~Ll~ki~~~~~ 206 (213)
.+++++-.....
T Consensus 120 ~~~~~~~~~~~~ 131 (137)
T 3hdg_A 120 EDFRHIKLAKEG 131 (137)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHhcCCC
Confidence 999876554443
No 45
>2wcv_A L-fucose mutarotase; ribose, pyranase, isomerase, fucose metabolism; HET: FUC; 1.90A {Escherichia coli}
Probab=25.48 E-value=41 Score=26.47 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.3
Q ss_pred HHHHHHCCCCceEEEecCccCcCCC
Q 041751 135 RKVYDQMPEPRWVISMGSRANGGGY 159 (213)
Q Consensus 135 ~~l~e~~~~pk~VIA~GsCA~~GGi 159 (213)
...|+..++++.||.=|-|+-+|.+
T Consensus 108 ~~Fy~~ak~a~aVVrTGE~~pYaNi 132 (140)
T 2wcv_A 108 FAFYERAQKAFAIVITGERAKYGNI 132 (140)
T ss_dssp HHHHHHHTTSSEEEEECCCSTTCCE
T ss_pred HHHHHHHhCCeEEEECCCCCcccEE
Confidence 4578999999999999999999876
No 46
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=25.43 E-value=23 Score=28.21 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=30.3
Q ss_pred CCCeeEEEEecccC--C---CChHHHHHHHHHCCCCceEEEecCcc
Q 041751 114 PRQSDVMIVAGTLT--N---KMAPALRKVYDQMPEPRWVISMGSRA 154 (213)
Q Consensus 114 Pr~aDIliVeG~Vt--~---km~~~l~~l~e~~~~pk~VIA~GsCA 154 (213)
+.++|+++|-|... . .....++.++++..+-|+|.|+++=+
T Consensus 64 ~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~ 109 (205)
T 2ab0_A 64 DGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAP 109 (205)
T ss_dssp TSCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHH
T ss_pred cccCCEEEECCCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhH
Confidence 46789999999752 1 23445667778888999999987765
No 47
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=25.36 E-value=74 Score=27.22 Aligned_cols=93 Identities=13% Similarity=0.112 Sum_probs=48.5
Q ss_pred hhHHHHhhhh---cCCcceecccCCccHHHHHhcCCCCcchhhhcceec---C--------CCCCeeEEEEe-----ccc
Q 041751 66 KVDNLLNWVR---RGSLWPMTFGLACCAVEMMHTGAAGYDLDRFGIIFR---P--------SPRQSDVMIVA-----GTL 126 (213)
Q Consensus 66 ~~d~~~~w~R---~~siW~~~~gc~GC~iE~l~~~~~~~Dl~rfgi~~~---~--------sPr~aDIliVe-----G~V 126 (213)
.+++..+|++ ...+....++-.|.+..+.......+.-..+.+... . .-.++|.+|+- |.+
T Consensus 243 ~~~~~~~~~~~~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y~~~~ 322 (404)
T 2ohh_A 243 IIEAYTGWATGMVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEP 322 (404)
T ss_dssp HHHHHHHHHTTCCCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEETTEE
T ss_pred HHHHHHHHhccCCCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccccccc
Confidence 4566677764 234555556666766666543322221111111110 0 12467888876 444
Q ss_pred CCCChHHHHHHHHHCC---CCceEEEecCccCcCC
Q 041751 127 TNKMAPALRKVYDQMP---EPRWVISMGSRANGGG 158 (213)
Q Consensus 127 t~km~~~l~~l~e~~~---~pk~VIA~GsCA~~GG 158 (213)
+..+...++++..... +-|.+..+|++...|+
T Consensus 323 ~~~~k~~ld~l~~~~~~~l~~k~~~~~~~~g~~~~ 357 (404)
T 2ohh_A 323 YPSVGDLLMYLRGLKFNRTLTRKALVFGSMGGNGG 357 (404)
T ss_dssp CTHHHHHHHHHHHHCGGGTCCEEEEEEEEESSSCC
T ss_pred hHHHHHHHHHhhhccccccCCCEEEEEEecCCCCh
Confidence 4445556666655444 5678888887654433
No 48
>3e7n_A D-ribose high-affinity transport system; D-ribose transport system, RBSD,csgid, structural genomics; 2.45A {Salmonella typhimurium}
Probab=24.69 E-value=40 Score=26.42 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.4
Q ss_pred HHHHHHCCCCceEEEecCccCcCCC
Q 041751 135 RKVYDQMPEPRWVISMGSRANGGGY 159 (213)
Q Consensus 135 ~~l~e~~~~pk~VIA~GsCA~~GGi 159 (213)
...|+..++++.||.=|-|+-+|.+
T Consensus 110 ~~Fy~~a~~a~aVVrTGE~~pYaNi 134 (142)
T 3e7n_A 110 EQFKKLTADSQAVIRSGECSPYANV 134 (142)
T ss_dssp HHHHHHHTTSSEEEECCCCSTTCCE
T ss_pred HHHHHHHhcceEEEECCCCCceeEE
Confidence 4578999999999999999999876
No 49
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=24.53 E-value=28 Score=27.15 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=28.1
Q ss_pred CCCeeEEEEecccC---CCChHHHHHHHHHCCCCceEEEecCcc
Q 041751 114 PRQSDVMIVAGTLT---NKMAPALRKVYDQMPEPRWVISMGSRA 154 (213)
Q Consensus 114 Pr~aDIliVeG~Vt---~km~~~l~~l~e~~~~pk~VIA~GsCA 154 (213)
+.++|+++|-|... ......++.++++.++.|+|.|+++=+
T Consensus 61 ~~~~D~livpGG~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~ 104 (188)
T 2fex_A 61 PVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAA 104 (188)
T ss_dssp TTTCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEEEETHHH
T ss_pred cccCCEEEECCCCcccccccHHHHHHHHHHHHCCCEEEEECHHH
Confidence 35789999999742 122334566677777899999987643
No 50
>3mvk_A Protein FUCU, protein RBSD; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; HET: PGE; 1.65A {Bifidobacterium longum subsp} SCOP: c.133.1.0
Probab=24.47 E-value=44 Score=26.50 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.2
Q ss_pred HHHHHHCCCCceEEEecCccCcCCC
Q 041751 135 RKVYDQMPEPRWVISMGSRANGGGY 159 (213)
Q Consensus 135 ~~l~e~~~~pk~VIA~GsCA~~GGi 159 (213)
...|+..++++.||.=|-|+-+|.+
T Consensus 113 ~~Fy~~~k~a~aVVrTGE~~pYaNi 137 (148)
T 3mvk_A 113 FAFYEQAKNAYCVIASGESAQYANL 137 (148)
T ss_dssp HHHHHHHTTCSEEEEECCCSTTCCE
T ss_pred HHHHHHHhCceEEEECCCCCceeeE
Confidence 4578999999999999999999876
No 51
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=24.13 E-value=62 Score=27.62 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=30.1
Q ss_pred CCCeeEEEEecccCCC-----ChHHHHHHHHHCCCCceEEEecCcc
Q 041751 114 PRQSDVMIVAGTLTNK-----MAPALRKVYDQMPEPRWVISMGSRA 154 (213)
Q Consensus 114 Pr~aDIliVeG~Vt~k-----m~~~l~~l~e~~~~pk~VIA~GsCA 154 (213)
+.++|++||-|..... ....++.++++..+-|+|.|+++=+
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp 188 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGP 188 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGG
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccH
Confidence 6789999999974221 2345666777778899999998754
No 52
>3dsa_A D-ribose high-affinity transport system; D-ribose transport system, RBSD, decamer, csgid, transport protein, structural genomics; 2.45A {Salmonella typhimurium} PDB: 3e7n_A
Probab=24.09 E-value=38 Score=26.70 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.2
Q ss_pred HHHHHHCCCCceEEEecCccCcCCC
Q 041751 135 RKVYDQMPEPRWVISMGSRANGGGY 159 (213)
Q Consensus 135 ~~l~e~~~~pk~VIA~GsCA~~GGi 159 (213)
...|+..++++.||.=|-|+-+|.+
T Consensus 110 ~~Fy~~~k~a~aVVrTGE~~pYaNi 134 (142)
T 3dsa_A 110 EQFKKLTADSQAVIRSGECSPYANV 134 (142)
T ss_dssp HHHHHHGGGSSEEEECCCCSTTCCE
T ss_pred HHHHHHHhcCeEEEECCCCCccceE
Confidence 4588999999999999999998875
No 53
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=23.84 E-value=82 Score=26.88 Aligned_cols=90 Identities=12% Similarity=0.186 Sum_probs=49.5
Q ss_pred hhhHHHHhhhhc---CCcceecccCCccHHHHHhcCCCCcchhhhcce-ec-C-C--------CCCeeEEEEec-----c
Q 041751 65 SKVDNLLNWVRR---GSLWPMTFGLACCAVEMMHTGAAGYDLDRFGII-FR-P-S--------PRQSDVMIVAG-----T 125 (213)
Q Consensus 65 ~~~d~~~~w~R~---~siW~~~~gc~GC~iE~l~~~~~~~Dl~rfgi~-~~-~-s--------Pr~aDIliVeG-----~ 125 (213)
..++++.+|.+. ..+.+..++-.|.+..+.......+.-+.+.+. +. . . -.++|.+++-- .
T Consensus 237 ~~l~~~~~~~~~~~~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~p~y~~~ 316 (398)
T 1ycg_A 237 RIIEAYARWAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINND 316 (398)
T ss_dssp HHHHHHHHHHHTCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCCBTTB
T ss_pred HHHHHHHHHhccCCcCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCcc
Confidence 346777788875 456667777788777766543222111111111 10 0 0 13567766643 3
Q ss_pred cCCCChHHHHHHHHHCCCCceEEEecCcc
Q 041751 126 LTNKMAPALRKVYDQMPEPRWVISMGSRA 154 (213)
Q Consensus 126 Vt~km~~~l~~l~e~~~~pk~VIA~GsCA 154 (213)
++..+...++++....-+-|.+..+|++.
T Consensus 317 ~~~~~~~~l~~l~~~~~~~k~~~~~~s~g 345 (398)
T 1ycg_A 317 ILPVVSPLLDDLVGLRPKNKVGLAFGAYG 345 (398)
T ss_dssp CCGGGHHHHHHHHHHCCSSCEEEEEEEES
T ss_pred chHHHHHHHHHHhccccCCCEEEEEEeCC
Confidence 33345566676665555668888888753
No 54
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=23.83 E-value=43 Score=30.46 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=41.5
Q ss_pred CeeEEEEecccCCCChHHHHHHHHHCCCCceEEEecCccCcCCCCCCCCccccCCCccccceEEccCCCCCHHHHHHH-H
Q 041751 116 QSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSRANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG-I 194 (213)
Q Consensus 116 ~aDIliVeG~Vt~km~~~l~~l~e~~~~pk~VIA~GsCA~~GGi~~~sy~~~~gv~~vVpVDi~IPGCPP~Pe~il~~-L 194 (213)
++|++|++|.+..........+.+... ++ +-.|----=|+. ....-++. .+| +.+||||-.....++. +
T Consensus 243 ~~DlvittGG~s~g~~D~t~~al~~~G--~i-~f~~va~~PG~p-----~~~g~~~~-~~v-~~LPGnP~sa~~~~~~~v 312 (411)
T 1g8l_A 243 QADVVISSGGVSVGEADYTKTILEELG--EI-AFWKLAIKPGKP-----FAFGKLSN-SWF-CGLPGNPVSATLTFYQLV 312 (411)
T ss_dssp HCSEEEECSSSCSSSCSHHHHHHHHHS--EE-EEEEBSEESCCE-----EEEEECSS-SEE-EECCSSHHHHHHHHHHTH
T ss_pred cCCEEEECCCCCCCCcccHHHHHHhcC--cE-EEEEEEeeCCCc-----EEEEEECC-EEE-EEcCCChHHHHHHHHHHH
Confidence 578999999887776555555444332 21 111111111111 01111111 245 8999999998887774 4
Q ss_pred HHHHHHHhhc
Q 041751 195 LQLQKKINRR 204 (213)
Q Consensus 195 ~~Ll~ki~~~ 204 (213)
.-++.++...
T Consensus 313 ~P~L~~l~g~ 322 (411)
T 1g8l_A 313 QPLLAKLSGN 322 (411)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhCC
Confidence 4466655443
No 55
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=23.27 E-value=52 Score=18.81 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhc
Q 041751 190 LLYGILQLQKKINRR 204 (213)
Q Consensus 190 il~~L~~Ll~ki~~~ 204 (213)
++.+|..|++||+++
T Consensus 2 vlrtitnlqkkirke 16 (26)
T 1m46_B 2 VLRTITNLQKKIRKE 16 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467889999998754
No 56
>1ogd_A High affinity ribose transport protein RBSD; sugar transport; HET: RIP; 1.95A {Bacillus subtilis} SCOP: c.133.1.1 PDB: 1ogc_A* 1oge_A* 1ogf_A
Probab=23.16 E-value=42 Score=26.16 Aligned_cols=25 Identities=12% Similarity=0.018 Sum_probs=22.3
Q ss_pred HHHHHHCCCCceEEEecCccCcCCC
Q 041751 135 RKVYDQMPEPRWVISMGSRANGGGY 159 (213)
Q Consensus 135 ~~l~e~~~~pk~VIA~GsCA~~GGi 159 (213)
...|+..++++.||.=|-|+-+|.+
T Consensus 99 ~~Fy~~~~~a~avVrTGE~~pYaNi 123 (131)
T 1ogd_A 99 EEFKLLTKDAKAVIRTGEFTPYANC 123 (131)
T ss_dssp HHHHHHGGGCSEEEECCCCSTTCCE
T ss_pred HHHHHHHhCceEEEECCCCCcccEE
Confidence 4588889999999999999999876
No 57
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=22.40 E-value=36 Score=29.54 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=27.5
Q ss_pred CCeeEEEEecccCCCChHHHHHHHHHCCCCceEEEecC
Q 041751 115 RQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGS 152 (213)
Q Consensus 115 r~aDIliVeG~Vt~km~~~l~~l~e~~~~pk~VIA~Gs 152 (213)
.++|+++++|+-=-+.. ++++.+..++++.||=+|-
T Consensus 185 p~~D~viiTgstlvN~T--l~~lL~~~~~a~~vvl~GP 220 (270)
T 3l5o_A 185 PECDYVYITCASVVDKT--LPRLLELSRNARRITLVGP 220 (270)
T ss_dssp GGCSEEEEETHHHHHTC--HHHHHHHTTTSSEEEEEST
T ss_pred ccCCEEEEEeehhhcCC--HHHHHhhCCCCCEEEEECC
Confidence 36899999997544433 6777888889999998884
No 58
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=22.29 E-value=5 Score=34.00 Aligned_cols=51 Identities=10% Similarity=0.192 Sum_probs=41.8
Q ss_pred hhcceecC--CCCCeeEEEEecccCCCChHHHHHHHHHCCCCceEEEecCccC
Q 041751 105 RFGIIFRP--SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSRAN 155 (213)
Q Consensus 105 rfgi~~~~--sPr~aDIliVeG~Vt~km~~~l~~l~e~~~~pk~VIA~GsCA~ 155 (213)
||+|..++ .|.|-.||+-|..|+.+.-..++.+-+..++...++-+|++=+
T Consensus 81 ~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDv 133 (203)
T 2fsv_C 81 SYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDV 133 (203)
T ss_dssp EEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHHGGGSTTCSEEEEESCCGG
T ss_pred EEEecccccCCCCCccEEEEEecCCHHHHhhHHHHhhhhhhcCEEEEeccccc
Confidence 34444433 6899999999999999876668889999999999999998744
No 59
>2wcu_A FUCU, protein FUCU homolog; fucose, ribose, pyranase, mutarotase, alternative splicing, isomerase; HET: FUC; 1.90A {Mus musculus}
Probab=21.14 E-value=42 Score=26.69 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.1
Q ss_pred HHHHHHCCCCceEEEecCccCcCCC
Q 041751 135 RKVYDQMPEPRWVISMGSRANGGGY 159 (213)
Q Consensus 135 ~~l~e~~~~pk~VIA~GsCA~~GGi 159 (213)
...|+..++++.||.=|-|+-+|.+
T Consensus 117 ~~Fy~~ak~a~aVVrTGE~~pYaNi 141 (149)
T 2wcu_A 117 FEFYERAKKAFAVVATGEMALYGNI 141 (149)
T ss_dssp HHHHHHHHTSSEEEEECCCSTTCCE
T ss_pred HHHHHHHhCCeEEEECCCCCcccEE
Confidence 3578888999999999999999876
No 60
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=20.67 E-value=42 Score=26.42 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=28.5
Q ss_pred CCCeeEEEEecccCC----CChHHHHHHHHHCCCCceEEEecCcc
Q 041751 114 PRQSDVMIVAGTLTN----KMAPALRKVYDQMPEPRWVISMGSRA 154 (213)
Q Consensus 114 Pr~aDIliVeG~Vt~----km~~~l~~l~e~~~~pk~VIA~GsCA 154 (213)
+.++|+++|-|.... .....++.++++.++-|.|.++++=+
T Consensus 84 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~ 128 (193)
T 1oi4_A 84 PAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP 128 (193)
T ss_dssp GGGCSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTH
T ss_pred cccCCEEEECCCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 357899999997321 22345666777777889998887643
Done!