Query 041752
Match_columns 72
No_of_seqs 102 out of 896
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:34:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.4E-25 4.8E-30 128.1 5.1 53 20-72 2-55 (63)
2 1u3e_M HNH homing endonuclease 96.7 7.1E-06 2.4E-10 53.1 -7.2 56 2-61 91-146 (174)
3 3igm_B PF14_0633 protein; AP2 94.1 0.049 1.7E-06 31.6 3.1 44 16-62 3-56 (77)
4 1z1b_A Integrase; protein-DNA 90.2 0.53 1.8E-05 31.4 5.0 40 23-66 15-54 (356)
5 3jtz_A Integrase; four strande 89.4 1.3 4.4E-05 25.5 5.6 44 24-67 28-75 (88)
6 3ju0_A Phage integrase; four s 78.8 5.4 0.00018 23.7 5.1 44 24-67 28-75 (108)
7 1x60_A Sporulation-specific N- 75.8 2.4 8.2E-05 23.1 2.7 24 42-65 45-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 74.0 5.3 0.00018 21.9 3.9 25 41-65 44-68 (81)
9 1b69_A Protein (integrase); in 73.9 5.5 0.00019 22.3 3.9 28 18-46 9-36 (69)
10 2ftc_I Mitochondrial ribosomal 63.9 15 0.00052 22.2 4.7 36 31-68 79-114 (118)
11 3r8s_M 50S ribosomal protein L 50.3 26 0.00089 21.8 4.2 32 32-67 92-124 (136)
12 3bbo_O Ribosomal protein L16; 40.5 14 0.00049 22.9 1.8 35 31-68 92-126 (135)
13 4esq_A Serine/threonine protei 33.7 25 0.00085 22.3 2.2 23 46-68 89-111 (194)
14 2lfv_A Protein DAMX; cell divi 38.9 9.3 0.00032 22.7 0.0 19 46-64 67-85 (106)
15 2cqh_A IGF-II mRNA-binding pro 28.6 44 0.0015 17.7 2.5 15 49-63 50-64 (93)
16 1ffk_F Ribosomal protein L10E; 28.5 74 0.0025 20.2 3.8 34 31-67 110-143 (157)
17 3efd_K KCSA; helix bundle, C-t 27.1 38 0.0013 15.8 1.6 16 53-68 2-17 (30)
18 2qwo_B Putative tyrosine-prote 26.3 53 0.0018 18.8 2.6 19 51-69 45-63 (92)
19 3awu_B MELC; tyrosinase, binar 25.7 38 0.0013 21.2 1.9 12 48-59 99-110 (134)
20 2cqb_A Peptidyl-prolyl CIS-tra 25.5 54 0.0019 17.6 2.5 14 49-62 60-73 (102)
21 2cq2_A Hypothetical protein LO 24.5 30 0.001 20.5 1.3 15 48-62 68-82 (114)
22 3j21_N 50S ribosomal protein L 23.2 1.1E+02 0.0039 19.9 4.0 34 32-68 122-157 (181)
23 2lxi_A RNA-binding protein 10; 22.7 42 0.0014 18.1 1.6 14 49-62 50-63 (91)
24 1wg1_A KIAA1579 protein, homol 22.1 70 0.0024 16.8 2.5 14 49-62 46-59 (88)
25 2fc8_A NCL protein; structure 22.0 53 0.0018 17.7 2.0 16 47-62 58-73 (102)
26 1vq8_H 50S ribosomal protein L 22.0 73 0.0025 20.6 2.8 33 32-67 123-157 (171)
27 3bid_A UPF0339 protein NMB1088 21.6 1.1E+02 0.0036 16.4 5.1 37 25-62 6-43 (64)
28 2dgt_A RNA-binding protein 30; 20.9 44 0.0015 17.7 1.4 15 48-62 49-63 (92)
29 2cqc_A Arginine/serine-rich sp 20.8 45 0.0015 17.6 1.4 15 48-62 62-76 (95)
30 2hvz_A Splicing factor, argini 20.7 59 0.002 17.5 2.0 15 49-63 43-57 (101)
31 2ra8_A Uncharacterized protein 20.6 61 0.0021 22.3 2.4 18 46-63 39-56 (362)
32 2dgu_A Heterogeneous nuclear r 20.3 46 0.0016 18.1 1.4 14 49-62 51-64 (103)
33 2fc9_A NCL protein; structure 20.1 56 0.0019 17.6 1.8 15 48-62 58-72 (101)
34 2dnq_A RNA-binding protein 4B; 20.1 48 0.0016 17.5 1.4 14 49-62 48-61 (90)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=1.4e-25 Score=128.12 Aligned_cols=53 Identities=45% Similarity=0.832 Sum_probs=49.6
Q ss_pred CeeeeEECCCCcEEEEeecCC-CceEEecCCCCCHHHHHHHHHHHHHhhcCCCC
Q 041752 20 EKKTLRARPWGKWAAETRDRY-KGICIWLGIFNITKEAARAYAEAAKHIRSNKA 72 (72)
Q Consensus 20 ~~~GV~~~~~gkw~A~i~~~~-~~k~~~LG~f~t~eeAa~AYd~aa~~~~g~~A 72 (72)
+|+||+++++|||+|+|++|. +|+++|||+|+|+||||+|||.++++++|.+|
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a 55 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRA 55 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCccc
Confidence 699999889999999999875 58999999999999999999999999999875
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=96.73 E-value=7.1e-06 Score=53.08 Aligned_cols=56 Identities=9% Similarity=-0.155 Sum_probs=37.9
Q ss_pred CcccccccccccCCCCCCCeeeeEECCCCcEEEEeecCCCceEEecCCCCCHHHHHHHHH
Q 041752 2 SSAKAEDSSYKAAHDEGTEKKTLRARPWGKWAAETRDRYKGICIWLGIFNITKEAARAYA 61 (72)
Q Consensus 2 ~~~~~n~~n~~~~~~~~s~~~GV~~~~~gkw~A~i~~~~~~k~~~LG~f~t~eeAa~AYd 61 (72)
.|.++|+.+......+.+ .+||.....++|.+.|.. + +.++||.|+|.+||+++|.
T Consensus 91 ~t~~eN~~~~~~~~~~~~-~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 91 VTQKINVENQMSRGTLNV-SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp ECHHHHHHHHHHHTCCCC-HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred CCHHHHhhcccccCcccc-eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 467777777654433322 456643333568888884 4 5677999999999999953
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=94.07 E-value=0.049 Score=31.63 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=28.8
Q ss_pred CCCCCeeeeE-ECCCCcEEEEeecCCCceEEe-------cCCC--CCHHHHHHHHHH
Q 041752 16 DEGTEKKTLR-ARPWGKWAAETRDRYKGICIW-------LGIF--NITKEAARAYAE 62 (72)
Q Consensus 16 ~~~s~~~GV~-~~~~gkw~A~i~~~~~~k~~~-------LG~f--~t~eeAa~AYd~ 62 (72)
..+|+++||+ ....+.|.|.-.+ +|++.. +| | +.+.++|..|.+
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rrsRtF~~k~yG-f~~e~Ak~~AIef~k 56 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRRSRTFHPKHFN-MDKEKARLAAVEFMK 56 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEEEEEECCTTHH-HHHHHHHHHHHHHHH
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEeeeeechhhcC-cCHHHHHHHHHHHHH
Confidence 4679999998 5666899999885 455542 34 4 345555555544
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=90.24 E-value=0.53 Score=31.37 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=30.5
Q ss_pred eeEECCCCcEEEEeecCCCceEEecCCCCCHHHHHHHHHHHHHh
Q 041752 23 TLRARPWGKWAAETRDRYKGICIWLGIFNITKEAARAYAEAAKH 66 (72)
Q Consensus 23 GV~~~~~gkw~A~i~~~~~~k~~~LG~f~t~eeAa~AYd~aa~~ 66 (72)
||..+++|.|..+.. .+|+++-+|. |..||......+...
T Consensus 15 ~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~ 54 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIE 54 (356)
T ss_dssp TEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHH
Confidence 577778899998765 6888999996 888887776654443
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=89.42 E-value=1.3 Score=25.54 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=29.8
Q ss_pred eEECCCCc--EEEEeecCCCceEEecCCCCC--HHHHHHHHHHHHHhh
Q 041752 24 LRARPWGK--WAAETRDRYKGICIWLGIFNI--TKEAARAYAEAAKHI 67 (72)
Q Consensus 24 V~~~~~gk--w~A~i~~~~~~k~~~LG~f~t--~eeAa~AYd~aa~~~ 67 (72)
++-.++|. |.-+-+.....+++-||.|+. .+||....+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 34456653 988887433345667999984 888887777766554
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=78.83 E-value=5.4 Score=23.73 Aligned_cols=44 Identities=27% Similarity=0.367 Sum_probs=28.5
Q ss_pred eEECCCCc--EEEEeecCCCceEEecCCCCC--HHHHHHHHHHHHHhh
Q 041752 24 LRARPWGK--WAAETRDRYKGICIWLGIFNI--TKEAARAYAEAAKHI 67 (72)
Q Consensus 24 V~~~~~gk--w~A~i~~~~~~k~~~LG~f~t--~eeAa~AYd~aa~~~ 67 (72)
++-.++|. |.-+.+.....+.+-||.|+. ..+|...-+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 34456654 988887433334567999985 788877766655444
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=75.84 E-value=2.4 Score=23.07 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=19.5
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q 041752 42 GICIWLGIFNITKEAARAYAEAAK 65 (72)
Q Consensus 42 ~k~~~LG~f~t~eeAa~AYd~aa~ 65 (72)
-.++.+|.|.+.+||..+.+....
T Consensus 45 ~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 45 LYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHHH
Confidence 357889999999999988776554
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=73.98 E-value=5.3 Score=21.91 Aligned_cols=25 Identities=8% Similarity=-0.059 Sum_probs=19.9
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHH
Q 041752 41 KGICIWLGIFNITKEAARAYAEAAK 65 (72)
Q Consensus 41 ~~k~~~LG~f~t~eeAa~AYd~aa~ 65 (72)
.-.++.+|.|.+.+||..+.+....
T Consensus 44 ~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 44 GWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHH
Confidence 3467889999999999988776554
No 9
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=73.86 E-value=5.5 Score=22.34 Aligned_cols=28 Identities=18% Similarity=0.031 Sum_probs=20.8
Q ss_pred CCCeeeeEECCCCcEEEEeecCCCceEEe
Q 041752 18 GTEKKTLRARPWGKWAAETRDRYKGICIW 46 (72)
Q Consensus 18 ~s~~~GV~~~~~gkw~A~i~~~~~~k~~~ 46 (72)
..-..|+++++.|+|+....+ ..|++..
T Consensus 9 r~L~~GesqR~dG~Y~yry~d-~~Gkr~~ 36 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYID-SFGEPQF 36 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEEC-TTSSEEE
T ss_pred CccCCCeEEccCCcEEEEEEc-CCCCEEE
Confidence 344678999999999999987 3455543
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=63.88 E-value=15 Score=22.22 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=27.2
Q ss_pred cEEEEeecCCCceEEecCCCCCHHHHHHHHHHHHHhhc
Q 041752 31 KWAAETRDRYKGICIWLGIFNITKEAARAYAEAAKHIR 68 (72)
Q Consensus 31 kw~A~i~~~~~~k~~~LG~f~t~eeAa~AYd~aa~~~~ 68 (72)
-|+|.|. .+..-+-++...+.+.|..|...|+.+|=
T Consensus 79 ~wva~Vk--~G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVK--AGRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEEC--CCCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 3999997 34444446666889999999999998873
No 11
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=50.29 E-value=26 Score=21.75 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=25.2
Q ss_pred EEEEeecCCCceEE-ecCCCCCHHHHHHHHHHHHHhh
Q 041752 32 WAAETRDRYKGICI-WLGIFNITKEAARAYAEAAKHI 67 (72)
Q Consensus 32 w~A~i~~~~~~k~~-~LG~f~t~eeAa~AYd~aa~~~ 67 (72)
|+|.|. .|+-+ -++. .+.+.|..|...|+.+|
T Consensus 92 wva~Vk---~G~ilfEi~g-~~~~~A~eAlr~a~~KL 124 (136)
T 3r8s_M 92 WVALIQ---PGKVLYEMDG-VPEELAREAFKLAAAKL 124 (136)
T ss_dssp EEEEEC---TTCEEEEEES-SCHHHHHHHHHHHHTTC
T ss_pred EEEEEC---CCCEEEEEeC-CCHHHHHHHHHHHHhcC
Confidence 999997 44444 4665 58999999999998876
No 12
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=40.53 E-value=14 Score=22.90 Aligned_cols=35 Identities=26% Similarity=0.154 Sum_probs=26.9
Q ss_pred cEEEEeecCCCceEEecCCCCCHHHHHHHHHHHHHhhc
Q 041752 31 KWAAETRDRYKGICIWLGIFNITKEAARAYAEAAKHIR 68 (72)
Q Consensus 31 kw~A~i~~~~~~k~~~LG~f~t~eeAa~AYd~aa~~~~ 68 (72)
-|+|.|. .+..-+-++. .+++.|..|...|+.+|=
T Consensus 92 ~wva~Vk--~G~ilfEi~g-v~~~~A~eAlr~a~~KLP 126 (135)
T 3bbo_O 92 YWVAVVK--PGRILYEISG-VAENIARRAVAIAASKMP 126 (135)
T ss_dssp CCCCCCC--TTCEEEEECS-SCTTHHHHHHHHHHHHCS
T ss_pred EEEEEEC--CCCEEEEEec-CCHHHHHHHHHHHHhhCC
Confidence 4999997 3444444666 899999999999998873
No 13
>4esq_A Serine/threonine protein kinase; receptor kinase, membrane, transferase; HET: BTB; 1.70A {Mycobacterium tuberculosis}
Probab=33.74 E-value=25 Score=22.33 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=19.5
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhc
Q 041752 46 WLGIFNITKEAARAYAEAAKHIR 68 (72)
Q Consensus 46 ~LG~f~t~eeAa~AYd~aa~~~~ 68 (72)
-++.|+++++|...|+..+....
T Consensus 89 aVv~fps~~~A~~~f~~~~~~w~ 111 (194)
T 4esq_A 89 AVVAFPTADKARAFVQTSADKWK 111 (194)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHh
Confidence 36889999999999999887653
No 14
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=38.90 E-value=9.3 Score=22.68 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=15.5
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 041752 46 WLGIFNITKEAARAYAEAA 64 (72)
Q Consensus 46 ~LG~f~t~eeAa~AYd~aa 64 (72)
..|.|+|.++|-.|-...-
T Consensus 67 lyG~Y~s~~~A~~A~~~LP 85 (106)
T 2lfv_A 67 VSGVYASKEEAKKAVSTLP 85 (106)
Confidence 3699999999999877643
No 15
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.63 E-value=44 Score=17.72 Aligned_cols=15 Identities=20% Similarity=-0.002 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAEA 63 (72)
Q Consensus 49 ~f~t~eeAa~AYd~a 63 (72)
.|.+.++|..|....
T Consensus 50 ~f~~~~~A~~A~~~l 64 (93)
T 2cqh_A 50 DYPDQNWAIRAIETL 64 (93)
T ss_dssp CCSCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHc
Confidence 799999999887643
No 16
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=28.54 E-value=74 Score=20.24 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=24.4
Q ss_pred cEEEEeecCCCceEEecCCCCCHHHHHHHHHHHHHhh
Q 041752 31 KWAAETRDRYKGICIWLGIFNITKEAARAYAEAAKHI 67 (72)
Q Consensus 31 kw~A~i~~~~~~k~~~LG~f~t~eeAa~AYd~aa~~~ 67 (72)
-|+|.|. -|.-++-=.=.+.+.|..|...|+.+|
T Consensus 110 ~wvArVk---~G~ilfei~gv~~~~A~eAlr~A~~Kl 143 (157)
T 1ffk_F 110 GTAARSH---GANHDFIAWVNPDPAVEFAWRRAYMKV 143 (157)
T ss_pred EEEEEEc---CCCEEEEEeccCHHHHHHHHHHHHhhC
Confidence 3999997 555555323356778889998888877
No 17
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=27.06 E-value=38 Score=15.81 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhc
Q 041752 53 TKEAARAYAEAAKHIR 68 (72)
Q Consensus 53 ~eeAa~AYd~aa~~~~ 68 (72)
++.|..||..+-+.+|
T Consensus 2 E~Aa~eay~~atRALH 17 (30)
T 3efd_K 2 EKAAEEAYTRTTRALH 17 (30)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 4566778887776665
No 18
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=26.27 E-value=53 Score=18.81 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHhhcC
Q 041752 51 NITKEAARAYAEAAKHIRS 69 (72)
Q Consensus 51 ~t~eeAa~AYd~aa~~~~g 69 (72)
.|.+|-.+||.++++++|.
T Consensus 45 as~~eIKkAYRklal~~HP 63 (92)
T 2qwo_B 45 VTPEQVKKVYRKAVLVVHP 63 (92)
T ss_dssp SSHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHCc
Confidence 4689999999999999984
No 19
>3awu_B MELC; tyrosinase, binary complex, type-3 copper, copper transfer, oxidoreductase-metal transport complex; 1.16A {Streptomyces castaneoglobisporus} PDB: 3awt_B 3aws_B 3awv_B 3aww_B 3ax0_B 3awy_B 3awz_B 3awx_B 1wxc_B 1wx2_B 1wx4_B 1wx5_B 1wx3_B 2ahk_B 2ahl_B 2zmx_B 2zmy_B 2zmz_B 2zwd_B 2zwe_B* ...
Probab=25.72 E-value=38 Score=21.24 Aligned_cols=12 Identities=33% Similarity=0.302 Sum_probs=9.9
Q ss_pred CCCCCHHHHHHH
Q 041752 48 GIFNITKEAARA 59 (72)
Q Consensus 48 G~f~t~eeAa~A 59 (72)
=.|+|+-+||+|
T Consensus 99 es~pTPl~AARa 110 (134)
T 3awu_B 99 DPVPTPRAAARA 110 (134)
T ss_dssp EEESSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 468999999886
No 20
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.53 E-value=54 Score=17.62 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAE 62 (72)
Q Consensus 49 ~f~t~eeAa~AYd~ 62 (72)
.|.+.++|..|.+.
T Consensus 60 ~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 60 EFELAEDAAAAIDN 73 (102)
T ss_dssp CCSSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 79999999998764
No 21
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.54 E-value=30 Score=20.45 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.4
Q ss_pred CCCCCHHHHHHHHHH
Q 041752 48 GIFNITKEAARAYAE 62 (72)
Q Consensus 48 G~f~t~eeAa~AYd~ 62 (72)
=+|.+.++|..|++.
T Consensus 68 V~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 68 ARYRTTEESKRAYVT 82 (114)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 378999999999764
No 22
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.22 E-value=1.1e+02 Score=19.88 Aligned_cols=34 Identities=24% Similarity=0.022 Sum_probs=26.1
Q ss_pred EEEEeecCCCceEEe-c-CCCCCHHHHHHHHHHHHHhhc
Q 041752 32 WAAETRDRYKGICIW-L-GIFNITKEAARAYAEAAKHIR 68 (72)
Q Consensus 32 w~A~i~~~~~~k~~~-L-G~f~t~eeAa~AYd~aa~~~~ 68 (72)
|+|+|. -|..++ + |.-.+.+.|..|...|+.+|=
T Consensus 122 wvArVk---~Gqilfei~~~~~~~~~A~eAlr~A~~KlP 157 (181)
T 3j21_N 122 LAARLK---KDQKILSIRVNRQHLKFAIEGARRAAMKFP 157 (181)
T ss_dssp CEEEEC---SSEEEEEEEECSTTHHHHHHHHHHHHHSSS
T ss_pred EEEEEc---CCCEEEEEEecCCCHHHHHHHHHHHhccCC
Confidence 999997 566654 3 334679999999999998874
No 23
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=22.74 E-value=42 Score=18.13 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAE 62 (72)
Q Consensus 49 ~f~t~eeAa~AYd~ 62 (72)
.|.+.|+|.+|.+.
T Consensus 50 ~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 50 EFSHLQDATRWMEA 63 (91)
T ss_dssp ECSSHHHHHHHHHT
T ss_pred EecCHHHHHHHHHh
Confidence 59999999998653
No 24
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=22.09 E-value=70 Score=16.82 Aligned_cols=14 Identities=14% Similarity=-0.012 Sum_probs=11.9
Q ss_pred CCCCHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAE 62 (72)
Q Consensus 49 ~f~t~eeAa~AYd~ 62 (72)
.|.+.++|..|.+.
T Consensus 46 ~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 46 TLLNGEQAQNAIQM 59 (88)
T ss_dssp CCSCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 79999999988763
No 25
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.98 E-value=53 Score=17.65 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=12.7
Q ss_pred cCCCCCHHHHHHHHHH
Q 041752 47 LGIFNITKEAARAYAE 62 (72)
Q Consensus 47 LG~f~t~eeAa~AYd~ 62 (72)
.=.|.+.++|..|.+.
T Consensus 58 fV~f~~~~~A~~A~~~ 73 (102)
T 2fc8_A 58 FVDFNSEEDAKAAKEA 73 (102)
T ss_dssp EEECSSHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHH
Confidence 3379999999988764
No 26
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=21.97 E-value=73 Score=20.60 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=25.3
Q ss_pred EEEEeecCCCceEEe-c-CCCCCHHHHHHHHHHHHHhh
Q 041752 32 WAAETRDRYKGICIW-L-GIFNITKEAARAYAEAAKHI 67 (72)
Q Consensus 32 w~A~i~~~~~~k~~~-L-G~f~t~eeAa~AYd~aa~~~ 67 (72)
|+|.|. -|..++ + |.-.+.+.|..|...|+.+|
T Consensus 123 wvArVk---~G~ilfei~~~~v~~~~A~eAlr~A~~KL 157 (171)
T 1vq8_H 123 TAARVQ---AGEQLFTAYCNVEDAEHVKEAFRRAYNKI 157 (171)
T ss_dssp EEEEEC---TTCEEEEEEECTTTHHHHHHHHHHHGGGS
T ss_pred EEEEEC---CCCEEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 999997 555554 3 33478999999999998887
No 27
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=21.61 E-value=1.1e+02 Score=16.45 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=28.4
Q ss_pred EECCCCcEEEEeecCCCceEEecCC-CCCHHHHHHHHHH
Q 041752 25 RARPWGKWAAETRDRYKGICIWLGI-FNITKEAARAYAE 62 (72)
Q Consensus 25 ~~~~~gkw~A~i~~~~~~k~~~LG~-f~t~eeAa~AYd~ 62 (72)
.+...|+|.=++.. .+|..|.-+. |.+..+|..+-+.
T Consensus 6 ~~~~~G~frfrLka-~NGevI~sSe~Y~sk~~a~~gI~s 43 (64)
T 3bid_A 6 YKDAKGEYRWRLKA-ANHEIIAQGEGYTSKQNCQHAVDL 43 (64)
T ss_dssp EECTTSCEEEEEEC-TTSCEEEECCCBSCHHHHHHHHHH
T ss_pred EECCCCCEEEEEEe-CCCCEEEECCCcCCHHHHHHHHHH
Confidence 45677999999986 5888887665 9999988877543
No 28
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.85 E-value=44 Score=17.74 Aligned_cols=15 Identities=13% Similarity=0.054 Sum_probs=12.1
Q ss_pred CCCCCHHHHHHHHHH
Q 041752 48 GIFNITKEAARAYAE 62 (72)
Q Consensus 48 G~f~t~eeAa~AYd~ 62 (72)
=.|.+.++|..|...
T Consensus 49 V~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 49 VHMERAEDAVEAIRG 63 (92)
T ss_dssp EEESCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 368999999988764
No 29
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.76 E-value=45 Score=17.61 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=12.5
Q ss_pred CCCCCHHHHHHHHHH
Q 041752 48 GIFNITKEAARAYAE 62 (72)
Q Consensus 48 G~f~t~eeAa~AYd~ 62 (72)
=.|.+.++|..|...
T Consensus 62 V~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 62 VYFENVDDAKEAKER 76 (95)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 379999999988764
No 30
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=20.67 E-value=59 Score=17.48 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAEA 63 (72)
Q Consensus 49 ~f~t~eeAa~AYd~a 63 (72)
.|.+.++|..|.+..
T Consensus 43 ~f~~~~~a~~A~~~l 57 (101)
T 2hvz_A 43 EFEDPRDAEDAVRGL 57 (101)
T ss_dssp ECSSHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHH
Confidence 689999999987753
No 31
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=20.62 E-value=61 Score=22.34 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=15.0
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 041752 46 WLGIFNITKEAARAYAEA 63 (72)
Q Consensus 46 ~LG~f~t~eeAa~AYd~a 63 (72)
-.-+|+++++|..++++.
T Consensus 39 ~~~~f~~~~~a~~~~~~l 56 (362)
T 2ra8_A 39 QVKNFSSAGEAEKAAGKL 56 (362)
T ss_dssp EEEECSSHHHHHHHHHHH
T ss_pred EeeeCCCHHHHHHHHHHH
Confidence 345799999999999973
No 32
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=20.29 E-value=46 Score=18.12 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAE 62 (72)
Q Consensus 49 ~f~t~eeAa~AYd~ 62 (72)
.|.+.++|..|.+.
T Consensus 51 ~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 51 HFDERDGAVKAMEE 64 (103)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHH
Confidence 68999999988764
No 33
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.13 E-value=56 Score=17.57 Aligned_cols=15 Identities=20% Similarity=0.093 Sum_probs=12.1
Q ss_pred CCCCCHHHHHHHHHH
Q 041752 48 GIFNITKEAARAYAE 62 (72)
Q Consensus 48 G~f~t~eeAa~AYd~ 62 (72)
=.|.+.++|..|...
T Consensus 58 V~f~~~~~A~~A~~~ 72 (101)
T 2fc9_A 58 IEFASFEDAKEALNS 72 (101)
T ss_dssp EECSSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 369999999988663
No 34
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.06 E-value=48 Score=17.52 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAE 62 (72)
Q Consensus 49 ~f~t~eeAa~AYd~ 62 (72)
.|.+.++|..|.+.
T Consensus 48 ~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 48 HIEDKTAAEDAIRN 61 (90)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998764
Done!