Query 041752
Match_columns 72
No_of_seqs 102 out of 896
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 17:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041752.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041752hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gcca_ d.10.1.2 (A:) GCC-box 99.9 9.7E-26 7.1E-30 127.7 5.1 53 20-72 2-55 (63)
2 d1utaa_ d.58.52.1 (A:) Cell di 72.9 2.4 0.00017 22.0 3.6 32 34-65 33-64 (77)
3 d1z1ba1 d.10.1.4 (A:11-59) lam 39.7 19 0.0014 17.6 3.2 21 36-58 16-36 (49)
4 d2j01q1 d.41.4.2 (Q:6-141) Rib 38.2 31 0.0023 19.9 4.7 33 31-67 87-120 (136)
5 d1wg1a_ d.58.7.1 (A:) Probable 37.7 12 0.00086 19.3 2.5 17 47-63 44-60 (88)
6 d1zj8a1 d.58.36.1 (A:327-406) 32.2 13 0.00093 19.0 1.9 20 20-39 4-23 (80)
7 d1x4ea1 d.58.7.1 (A:8-79) RNA- 31.7 10 0.00074 18.5 1.4 15 49-63 46-60 (72)
8 d2cpia1 d.58.7.1 (A:101-189) E 31.4 10 0.00074 19.6 1.4 15 49-63 62-76 (89)
9 d2cq1a1 d.58.7.1 (A:51-138) Po 30.8 15 0.0011 18.6 2.1 21 44-64 45-65 (88)
10 d1bb8a_ d.10.1.1 (A:) DNA-bind 30.8 21 0.0015 18.7 2.7 25 22-47 13-37 (71)
11 d2adca2 d.58.7.1 (A:444-531) P 30.0 13 0.00098 18.8 1.8 18 45-62 50-67 (88)
12 d2fh1a2 d.109.1.1 (A:533-628) 28.9 38 0.0028 17.7 4.7 31 34-64 34-64 (96)
13 d2csua3 c.23.4.1 (A:291-453) A 28.6 15 0.0011 20.8 1.9 19 47-65 138-156 (163)
14 d1z96a1 a.5.2.1 (A:295-332) UB 28.2 15 0.0011 16.7 1.5 12 52-63 15-26 (38)
15 d1a8ya2 c.47.1.3 (A:127-228) C 27.4 17 0.0012 19.7 2.0 27 44-70 20-47 (102)
16 d1qhka_ d.100.1.2 (A:) N-termi 27.3 12 0.00085 17.9 1.1 10 48-57 34-43 (47)
17 d2cr9a1 d.297.1.1 (A:8-133) Po 27.2 13 0.00096 21.1 1.5 23 43-65 80-102 (126)
18 d1wi6a1 d.58.7.1 (A:69-143) Ri 26.2 14 0.0011 18.3 1.4 17 47-63 37-53 (75)
19 d1vqoh1 d.41.4.1 (H:1-163) Rib 25.1 44 0.0032 19.8 3.8 33 32-67 123-157 (163)
20 d2pa2a1 d.41.4.1 (A:40-176) Ri 24.9 30 0.0022 20.1 2.9 33 32-67 86-120 (137)
21 d2ghpa1 d.58.7.1 (A:116-196) U 24.7 21 0.0015 17.6 2.0 14 49-62 49-62 (81)
22 d3begb1 d.58.7.1 (B:121-207) S 24.5 16 0.0012 18.6 1.4 14 49-62 41-54 (87)
23 d2bz2a1 d.58.7.1 (A:35-113) Ne 24.0 22 0.0016 17.6 2.0 16 49-64 45-60 (79)
24 d1rk8a_ d.58.7.1 (A:) RNA-bind 23.9 17 0.0012 18.5 1.4 16 48-63 54-69 (88)
25 d1b7fa2 d.58.7.1 (A:205-289) S 23.8 17 0.0012 18.3 1.4 16 48-63 53-68 (85)
26 d1no8a_ d.58.7.1 (A:) Nuclear 23.3 17 0.0013 18.0 1.4 14 49-62 47-60 (78)
27 d2cpha1 d.58.7.1 (A:454-547) P 22.7 20 0.0015 18.5 1.6 16 48-63 56-71 (94)
28 d2cq2a1 d.58.7.1 (A:25-125) Al 22.5 20 0.0015 18.9 1.6 15 48-62 61-75 (101)
29 d1whya_ d.58.7.1 (A:) Putative 22.3 22 0.0016 18.3 1.8 20 44-63 54-73 (97)
30 d1vlha_ c.26.1.3 (A:) Phosphop 22.2 22 0.0016 19.0 1.8 24 44-67 3-26 (157)
31 d1x4da1 d.58.7.1 (A:8-96) Matr 22.1 23 0.0017 18.1 1.8 21 44-64 46-66 (89)
32 d1od6a_ c.26.1.3 (A:) Phosphop 21.9 25 0.0018 18.7 2.1 24 44-67 3-26 (160)
33 d1wg4a_ d.58.7.1 (A:) Splicing 21.7 19 0.0014 18.8 1.4 14 49-62 56-69 (98)
34 d1o0pa_ d.58.7.1 (A:) Splicing 21.3 16 0.0011 19.4 1.0 19 49-67 64-82 (104)
35 d2cpea1 d.58.7.1 (A:353-453) R 21.3 23 0.0017 18.1 1.7 14 49-62 64-77 (101)
36 d2msta_ d.58.7.1 (A:) Neural R 20.9 23 0.0017 17.0 1.6 12 49-60 47-58 (75)
37 d1b7fa1 d.58.7.1 (A:123-204) S 20.8 21 0.0015 17.6 1.4 15 49-63 50-64 (82)
38 d1f9aa_ c.26.1.3 (A:) Nicotina 20.8 22 0.0016 19.3 1.7 25 44-68 3-27 (164)
39 d2akja1 d.58.36.1 (A:346-430) 20.7 44 0.0032 17.2 2.8 21 19-39 6-27 (85)
40 d2cqba1 d.58.7.1 (A:1-89) Pept 20.4 37 0.0027 17.0 2.5 16 48-63 52-67 (89)
No 1
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.92 E-value=9.7e-26 Score=127.72 Aligned_cols=53 Identities=45% Similarity=0.832 Sum_probs=49.2
Q ss_pred CeeeeEECCCCcEEEEeecC-CCceEEecCCCCCHHHHHHHHHHHHHhhcCCCC
Q 041752 20 EKKTLRARPWGKWAAETRDR-YKGICIWLGIFNITKEAARAYAEAAKHIRSNKA 72 (72)
Q Consensus 20 ~~~GV~~~~~gkw~A~i~~~-~~~k~~~LG~f~t~eeAa~AYd~aa~~~~g~~A 72 (72)
.|+||+++++|||.|+|++| .+++++|||+|+|+||||+|||.++++++|++|
T Consensus 2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a 55 (63)
T d1gcca_ 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRA 55 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCC
T ss_pred CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCc
Confidence 49999988899999999986 577999999999999999999999999999875
No 2
>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}
Probab=72.88 E-value=2.4 Score=21.95 Aligned_cols=32 Identities=6% Similarity=-0.041 Sum_probs=22.7
Q ss_pred EEeecCCCceEEecCCCCCHHHHHHHHHHHHH
Q 041752 34 AETRDRYKGICIWLGIFNITKEAARAYAEAAK 65 (72)
Q Consensus 34 A~i~~~~~~k~~~LG~f~t~eeAa~AYd~aa~ 65 (72)
+.|.....--++.+|.|++.++|..+.+....
T Consensus 33 ~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 64 (77)
T d1utaa_ 33 SKITTNNGWNRVVIGPVKGKENADSTLNRLKM 64 (77)
T ss_dssp EEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred ceecCCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 33433334567889999999999999776543
No 3
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=39.75 E-value=19 Score=17.61 Aligned_cols=21 Identities=29% Similarity=0.145 Sum_probs=15.6
Q ss_pred eecCCCceEEecCCCCCHHHHHH
Q 041752 36 TRDRYKGICIWLGIFNITKEAAR 58 (72)
Q Consensus 36 i~~~~~~k~~~LG~f~t~eeAa~ 58 (72)
-++|..|+-+-||+ +..+|..
T Consensus 16 yr~P~tGk~~~LG~--d~~~A~~ 36 (49)
T d1z1ba1 16 YRDPRTGKEFGLGR--DRRIAIT 36 (49)
T ss_dssp EECTTTCCEEEEES--CHHHHHH
T ss_pred eecCCCCceecCCc--cHHHHHH
Confidence 45779999999999 5444443
No 4
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]}
Probab=38.23 E-value=31 Score=19.86 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=25.9
Q ss_pred cEEEEeecCCCceEEe-cCCCCCHHHHHHHHHHHHHhh
Q 041752 31 KWAAETRDRYKGICIW-LGIFNITKEAARAYAEAAKHI 67 (72)
Q Consensus 31 kw~A~i~~~~~~k~~~-LG~f~t~eeAa~AYd~aa~~~ 67 (72)
-|++.|. -|+-++ ++. .++++|..|...++.+|
T Consensus 87 ~wv~~Vk---~G~ilfEi~g-v~~~~a~~al~~a~~KL 120 (136)
T d2j01q1 87 GYVAVVK---PGRVMFEVAG-VTEEQAMEALRIAGHKL 120 (136)
T ss_dssp EEEEEEC---TTCEEEEEES-SCHHHHHHHHHHHHHHS
T ss_pred eEEEEec---CCcEEEEEcC-CCHHHHHHHHHHHHhhC
Confidence 3999997 455444 655 78899999999999887
No 5
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.70 E-value=12 Score=19.26 Aligned_cols=17 Identities=12% Similarity=-0.080 Sum_probs=13.6
Q ss_pred cCCCCCHHHHHHHHHHH
Q 041752 47 LGIFNITKEAARAYAEA 63 (72)
Q Consensus 47 LG~f~t~eeAa~AYd~a 63 (72)
.=+|+++++|..|....
T Consensus 44 fV~f~~~~~A~~Ai~~l 60 (88)
T d1wg1a_ 44 FVTLLNGEQAQNAIQMF 60 (88)
T ss_dssp EECCSCHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHh
Confidence 45799999999887653
No 6
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=32.23 E-value=13 Score=19.03 Aligned_cols=20 Identities=10% Similarity=-0.069 Sum_probs=16.1
Q ss_pred CeeeeEECCCCcEEEEeecC
Q 041752 20 EKKTLRARPWGKWAAETRDR 39 (72)
Q Consensus 20 ~~~GV~~~~~gkw~A~i~~~ 39 (72)
.+.||..++.|.|...|+.|
T Consensus 4 dh~Gv~~q~dG~~~vri~~p 23 (80)
T d1zj8a1 4 DHVGVQRLKNGLNAVGVAPI 23 (80)
T ss_dssp CCCEEEECTTSSEEEEEBCB
T ss_pred CcceEeeecCCcEEEEEecc
Confidence 35699988889999899853
No 7
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.72 E-value=10 Score=18.50 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAEA 63 (72)
Q Consensus 49 ~f~t~eeAa~AYd~a 63 (72)
+|.++++|..|....
T Consensus 46 ~f~~~~~A~~Ai~~l 60 (72)
T d1x4ea1 46 DFDSPSAAQKAVTAL 60 (72)
T ss_dssp EESCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHh
Confidence 689999999988753
No 8
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.38 E-value=10 Score=19.60 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAEA 63 (72)
Q Consensus 49 ~f~t~eeAa~AYd~a 63 (72)
+|+++|+|..|.+..
T Consensus 62 ~f~~~~~A~~Ai~~l 76 (89)
T d2cpia1 62 TYIRSEDALRAIQCV 76 (89)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred ecccchhHHHHHHHh
Confidence 589999999987653
No 9
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.82 E-value=15 Score=18.60 Aligned_cols=21 Identities=5% Similarity=-0.230 Sum_probs=16.8
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 041752 44 CIWLGIFNITKEAARAYAEAA 64 (72)
Q Consensus 44 ~~~LG~f~t~eeAa~AYd~aa 64 (72)
..-+-.|++.|+|..|.+...
T Consensus 45 ~~afV~f~~~e~A~~a~~~~~ 65 (88)
T d2cq1a1 45 NQAFLELATEEAAITMVNYYS 65 (88)
T ss_dssp TEEEEEESSHHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHc
Confidence 345678999999999988755
No 10
>d1bb8a_ d.10.1.1 (A:) DNA-binding domain from tn916 integrase {Enterococcus faecalis [TaxId: 1351]}
Probab=30.79 E-value=21 Score=18.73 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=18.8
Q ss_pred eeeEECCCCcEEEEeecCCCceEEec
Q 041752 22 KTLRARPWGKWAAETRDRYKGICIWL 47 (72)
Q Consensus 22 ~GV~~~~~gkw~A~i~~~~~~k~~~L 47 (72)
.|-++++.|+|+..-.++ .|++.++
T Consensus 13 ~GEsQR~DGrY~ykY~d~-~Gk~k~v 37 (71)
T d1bb8a_ 13 TGESQRKDGRYLYKYIDS-FGEPQFV 37 (71)
T ss_dssp TTCEECTTSCEEEEEECT-TCCEEEE
T ss_pred CCccCcCCCcEEEEEEcC-CCCEEEE
Confidence 367889999999988774 5666554
No 11
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.04 E-value=13 Score=18.78 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=14.0
Q ss_pred EecCCCCCHHHHHHHHHH
Q 041752 45 IWLGIFNITKEAARAYAE 62 (72)
Q Consensus 45 ~~LG~f~t~eeAa~AYd~ 62 (72)
.-+=.|++.++|..|...
T Consensus 50 ~afV~f~~~~~A~~A~~~ 67 (88)
T d2adca2 50 MALIQMGSVEEAVQALID 67 (88)
T ss_dssp CEEEEESSHHHHHHHHHH
T ss_pred eeEEEECCHHHHHHHHHh
Confidence 334589999999999764
No 12
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.89 E-value=38 Score=17.70 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=24.4
Q ss_pred EEeecCCCceEEecCCCCCHHHHHHHHHHHH
Q 041752 34 AETRDRYKGICIWLGIFNITKEAARAYAEAA 64 (72)
Q Consensus 34 A~i~~~~~~k~~~LG~f~t~eeAa~AYd~aa 64 (72)
+.|-+..+...+|.|...+.+|-..|.+.|.
T Consensus 34 ~fILd~~~~iyvW~G~~s~~~er~~a~~~a~ 64 (96)
T d2fh1a2 34 AFVLKTPSAAYLWVGTGASEAEKTGAQELLR 64 (96)
T ss_dssp EEEEECSSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEECCCEEEEEECCCCCHHHHHHHHHHHH
Confidence 4455545778899999999999999887664
No 13
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=28.58 E-value=15 Score=20.79 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=15.6
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 041752 47 LGIFNITKEAARAYAEAAK 65 (72)
Q Consensus 47 LG~f~t~eeAa~AYd~aa~ 65 (72)
+-.|+++|+|++|+-....
T Consensus 138 ip~f~~pe~a~~Al~~l~~ 156 (163)
T d2csua3 138 IPTYERPEDVASAAYALVE 156 (163)
T ss_dssp CCEESSHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHH
Confidence 5789999999999876554
No 14
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=28.20 E-value=15 Score=16.74 Aligned_cols=12 Identities=42% Similarity=0.241 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHH
Q 041752 52 ITKEAARAYAEA 63 (72)
Q Consensus 52 t~eeAa~AYd~a 63 (72)
++-||+.|.|++
T Consensus 15 dpleaaqaldaa 26 (38)
T d1z96a1 15 DPLEAAQALDAA 26 (38)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHhhh
Confidence 477889998875
No 15
>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=27.43 E-value=17 Score=19.74 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=20.9
Q ss_pred EEecCCCCCH-HHHHHHHHHHHHhhcCC
Q 041752 44 CIWLGIFNIT-KEAARAYAEAAKHIRSN 70 (72)
Q Consensus 44 ~~~LG~f~t~-eeAa~AYd~aa~~~~g~ 70 (72)
-.-||.|++. .+...+|..+|..++..
T Consensus 20 v~VvGfF~~~~~~~~~~F~~~A~~~rd~ 47 (102)
T d1a8ya2 20 IKLIGYFKNKDSEHYKAFKEAAEEFHPY 47 (102)
T ss_dssp CEEEEECSSTTCHHHHHHHHHHHHHTTT
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHcCCC
Confidence 3568999875 46789999999888653
No 16
>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.26 E-value=12 Score=17.89 Aligned_cols=10 Identities=30% Similarity=0.295 Sum_probs=7.6
Q ss_pred CCCCCHHHHH
Q 041752 48 GIFNITKEAA 57 (72)
Q Consensus 48 G~f~t~eeAa 57 (72)
-.|+|.+||.
T Consensus 34 k~F~t~~eA~ 43 (47)
T d1qhka_ 34 KKFNSYEQAK 43 (47)
T ss_dssp EEESCHHHHH
T ss_pred CCcCCHHHHH
Confidence 4688888884
No 17
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.15 E-value=13 Score=21.15 Aligned_cols=23 Identities=9% Similarity=-0.025 Sum_probs=17.8
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q 041752 43 ICIWLGIFNITKEAARAYAEAAK 65 (72)
Q Consensus 43 k~~~LG~f~t~eeAa~AYd~aa~ 65 (72)
....+..|.+.++|..++.+.=.
T Consensus 80 g~~~~~~~~~~~~Ai~~F~kkF~ 102 (126)
T d2cr9a1 80 GSNKLEQMPSKEDAIEHFMKLYE 102 (126)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccEecCCcCCHHHHHHHHHHHHH
Confidence 34557889999999999987533
No 18
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.18 E-value=14 Score=18.33 Aligned_cols=17 Identities=12% Similarity=-0.058 Sum_probs=13.5
Q ss_pred cCCCCCHHHHHHHHHHH
Q 041752 47 LGIFNITKEAARAYAEA 63 (72)
Q Consensus 47 LG~f~t~eeAa~AYd~a 63 (72)
.=+|++.++|..|.+..
T Consensus 37 fv~f~~~~~A~~Ai~~l 53 (75)
T d1wi6a1 37 FVTLLNGEQAEAAINTF 53 (75)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHh
Confidence 34689999999998764
No 19
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=25.15 E-value=44 Score=19.79 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=24.0
Q ss_pred EEEEeecCCCceEEe-cC-CCCCHHHHHHHHHHHHHhh
Q 041752 32 WAAETRDRYKGICIW-LG-IFNITKEAARAYAEAAKHI 67 (72)
Q Consensus 32 w~A~i~~~~~~k~~~-LG-~f~t~eeAa~AYd~aa~~~ 67 (72)
|+|+|. -|.-++ ++ .-++.|.|..|...|+.+|
T Consensus 123 ~aArVk---~G~ilfei~~~~~~~~~akeALr~A~~KL 157 (163)
T d1vqoh1 123 TAARVQ---AGEQLFTAYCNVEDAEHVKEAFRRAYNKI 157 (163)
T ss_dssp EEEEEC---TTCEEEEEEECSTTHHHHHHHHHHHGGGS
T ss_pred EEEEEC---CCCEEEEEEeccccHHHHHHHHHHHhccC
Confidence 999997 455554 44 3456788889998888776
No 20
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.93 E-value=30 Score=20.07 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=24.8
Q ss_pred EEEEeecCCCceEEe-cCC-CCCHHHHHHHHHHHHHhh
Q 041752 32 WAAETRDRYKGICIW-LGI-FNITKEAARAYAEAAKHI 67 (72)
Q Consensus 32 w~A~i~~~~~~k~~~-LG~-f~t~eeAa~AYd~aa~~~ 67 (72)
|.|+|. .|+-++ ++. -.+.+.|..|...++.+|
T Consensus 86 waArVk---~G~ilfEi~g~~~~~~~Ak~ALr~Aa~KL 120 (137)
T d2pa2a1 86 TVARVH---IGQVIMSIRTKLQNKEHVIEALRRAKFKF 120 (137)
T ss_dssp CEEEEC---TTBEEEEEEECGGGHHHHHHHHHHHGGGS
T ss_pred EEEEec---CCcEEEEEeecccCHHHHHHHHHHHhccC
Confidence 999997 555554 543 356788999999998887
No 21
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.69 E-value=21 Score=17.60 Aligned_cols=14 Identities=7% Similarity=-0.007 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAE 62 (72)
Q Consensus 49 ~f~t~eeAa~AYd~ 62 (72)
.|.+.|+|..|...
T Consensus 49 ~f~~~e~A~~Ai~~ 62 (81)
T d2ghpa1 49 DVTSKEDARYCVEK 62 (81)
T ss_dssp ECSSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 58999999988654
No 22
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.45 E-value=16 Score=18.55 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAE 62 (72)
Q Consensus 49 ~f~t~eeAa~AYd~ 62 (72)
+|.+.++|..|.+.
T Consensus 41 ~f~~~~~a~~Ai~~ 54 (87)
T d3begb1 41 EFVRKEDMTYAVRK 54 (87)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHH
Confidence 79999999998765
No 23
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.97 E-value=22 Score=17.60 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAEAA 64 (72)
Q Consensus 49 ~f~t~eeAa~AYd~aa 64 (72)
.|++.++|..|.+..-
T Consensus 45 ~f~~~~~A~~Ai~~ln 60 (79)
T d2bz2a1 45 TYEKMESADQAVAELN 60 (79)
T ss_dssp ECSSHHHHHHHHHHHT
T ss_pred EEcccHHHHHHHHHhC
Confidence 4899999999887643
No 24
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=23.89 E-value=17 Score=18.52 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHHHHH
Q 041752 48 GIFNITKEAARAYAEA 63 (72)
Q Consensus 48 G~f~t~eeAa~AYd~a 63 (72)
=.|.+.++|..|.+..
T Consensus 54 V~f~~~~~A~~A~~~l 69 (88)
T d1rk8a_ 54 VEYETHKQALAAKEAL 69 (88)
T ss_dssp EEESSHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHc
Confidence 3689999999998753
No 25
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=23.79 E-value=17 Score=18.28 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHHHHH
Q 041752 48 GIFNITKEAARAYAEA 63 (72)
Q Consensus 48 G~f~t~eeAa~AYd~a 63 (72)
=+|.+.++|..|.+..
T Consensus 53 V~f~~~~~A~~Ai~~l 68 (85)
T d1b7fa2 53 VRYNKREEAQEAISAL 68 (85)
T ss_dssp EEESSHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHH
Confidence 3699999999887753
No 26
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.28 E-value=17 Score=17.99 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAE 62 (72)
Q Consensus 49 ~f~t~eeAa~AYd~ 62 (72)
.|.++++|..|...
T Consensus 47 ~f~~~~~A~~Ai~~ 60 (78)
T d1no8a_ 47 HFERKADALKAMKQ 60 (78)
T ss_dssp EESCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998765
No 27
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.65 E-value=20 Score=18.47 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=13.4
Q ss_pred CCCCCHHHHHHHHHHH
Q 041752 48 GIFNITKEAARAYAEA 63 (72)
Q Consensus 48 G~f~t~eeAa~AYd~a 63 (72)
=.|.+.++|..|....
T Consensus 56 V~f~~~~~A~~Ai~~l 71 (94)
T d2cpha1 56 VDFITKQDAKKAFNAL 71 (94)
T ss_dssp EEESSHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHc
Confidence 3689999999998764
No 28
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.51 E-value=20 Score=18.94 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.5
Q ss_pred CCCCCHHHHHHHHHH
Q 041752 48 GIFNITKEAARAYAE 62 (72)
Q Consensus 48 G~f~t~eeAa~AYd~ 62 (72)
=.|.+.|+|..|.+.
T Consensus 61 V~f~~~e~A~~A~~~ 75 (101)
T d2cq2a1 61 ARYRTTEESKRAYVT 75 (101)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 458999999999874
No 29
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.33 E-value=22 Score=18.32 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=15.2
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 041752 44 CIWLGIFNITKEAARAYAEA 63 (72)
Q Consensus 44 ~~~LG~f~t~eeAa~AYd~a 63 (72)
..-+=.|.+.|+|..|.+..
T Consensus 54 ~~afV~f~~~~~A~~A~~~l 73 (97)
T d1whya_ 54 SFAYIQYESLDAAQAACAKM 73 (97)
T ss_dssp CCEEEEESSHHHHHHHHHHH
T ss_pred cEEEeccCCHHHHHHHHHHh
Confidence 34445799999999998764
No 30
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}
Probab=22.22 E-value=22 Score=18.99 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=19.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhh
Q 041752 44 CIWLGIFNITKEAARAYAEAAKHI 67 (72)
Q Consensus 44 ~~~LG~f~t~eeAa~AYd~aa~~~ 67 (72)
-++.|+||=+...|...-..++..
T Consensus 3 aifgGsFdPiH~GHl~i~~~a~~~ 26 (157)
T d1vlha_ 3 AVYPGSFDPITLGHVDIIKRALSI 26 (157)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHTT
T ss_pred EEEeecCCCCcHHHHHHHHHHHHh
Confidence 478999999999998887776654
No 31
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.08 E-value=23 Score=18.14 Aligned_cols=21 Identities=14% Similarity=-0.122 Sum_probs=16.5
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 041752 44 CIWLGIFNITKEAARAYAEAA 64 (72)
Q Consensus 44 ~~~LG~f~t~eeAa~AYd~aa 64 (72)
..-+-.|++.++|..|.+...
T Consensus 46 ~~afV~f~~~~~A~~A~~~l~ 66 (89)
T d1x4da1 46 NEAFIEMATTEDAQAAVDYYT 66 (89)
T ss_dssp SCEEEEESSHHHHHHHHHHHH
T ss_pred eEEEEEEcchhhHHHHHHHHh
Confidence 345578999999999988654
No 32
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=21.94 E-value=25 Score=18.73 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=19.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhh
Q 041752 44 CIWLGIFNITKEAARAYAEAAKHI 67 (72)
Q Consensus 44 ~~~LG~f~t~eeAa~AYd~aa~~~ 67 (72)
-++.|+||-..-+|...-..+.+.
T Consensus 3 ~ifgGsFdP~H~GHl~ii~~a~~~ 26 (160)
T d1od6a_ 3 VVYPGSFDPLTNGHLDVIQRASRL 26 (160)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHHHHh
Confidence 378999999988888877766654
No 33
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.66 E-value=19 Score=18.81 Aligned_cols=14 Identities=7% Similarity=0.038 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAE 62 (72)
Q Consensus 49 ~f~t~eeAa~AYd~ 62 (72)
+|.|.|+|..|.+.
T Consensus 56 ~f~~~~~a~~Ai~~ 69 (98)
T d1wg4a_ 56 EYLRKEDMEYALRK 69 (98)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 79999999998764
No 34
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.35 E-value=16 Score=19.39 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 041752 49 IFNITKEAARAYAEAAKHI 67 (72)
Q Consensus 49 ~f~t~eeAa~AYd~aa~~~ 67 (72)
.|.++++|..|....--+.
T Consensus 64 ~f~~~e~A~~A~~~l~Gr~ 82 (104)
T d1o0pa_ 64 EFTSVFDCQKAMQGLTGRK 82 (104)
T ss_dssp EESCHHHHHHHHHHHSSCC
T ss_pred EECCHHHHHHHHHHHCCCE
Confidence 3899999999877654333
No 35
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.34 E-value=23 Score=18.10 Aligned_cols=14 Identities=14% Similarity=-0.040 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAE 62 (72)
Q Consensus 49 ~f~t~eeAa~AYd~ 62 (72)
.|.++++|..|...
T Consensus 64 ~f~~~~~a~~Ai~~ 77 (101)
T d2cpea1 64 SYEDPPTAKAAVEW 77 (101)
T ss_dssp EBSSHHHHHHHHHH
T ss_pred EecCHHHHHHHHHH
Confidence 68999999988764
No 36
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.90 E-value=23 Score=17.00 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=9.9
Q ss_pred CCCCHHHHHHHH
Q 041752 49 IFNITKEAARAY 60 (72)
Q Consensus 49 ~f~t~eeAa~AY 60 (72)
+|++.|+|..|.
T Consensus 47 ~F~~~~~a~~al 58 (75)
T d2msta_ 47 TFESEDIVEKVC 58 (75)
T ss_dssp ECSCHHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 699999987775
No 37
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=20.82 E-value=21 Score=17.58 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHHHHH
Q 041752 49 IFNITKEAARAYAEA 63 (72)
Q Consensus 49 ~f~t~eeAa~AYd~a 63 (72)
.|.+.++|.+|.+..
T Consensus 50 ~f~~~~~A~~ai~~l 64 (82)
T d1b7fa1 50 DFTSEMDSQRAIKVL 64 (82)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHh
Confidence 589999999887653
No 38
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=20.76 E-value=22 Score=19.29 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=20.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhc
Q 041752 44 CIWLGIFNITKEAARAYAEAAKHIR 68 (72)
Q Consensus 44 ~~~LG~f~t~eeAa~AYd~aa~~~~ 68 (72)
-+++|+||-..-.|...-..+.+..
T Consensus 3 gl~~G~FdP~H~GH~~li~~a~~~~ 27 (164)
T d1f9aa_ 3 GFIIGRFQPFHKGHLEVIKKIAEEV 27 (164)
T ss_dssp EEEEECCTTCCHHHHHHHHHHTTTC
T ss_pred EEEecccCCCCHHHHHHHHHHHHhC
Confidence 4789999999888888877776654
No 39
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=20.65 E-value=44 Score=17.18 Aligned_cols=21 Identities=10% Similarity=-0.110 Sum_probs=16.2
Q ss_pred CCeeeeE-ECCCCcEEEEeecC
Q 041752 19 TEKKTLR-ARPWGKWAAETRDR 39 (72)
Q Consensus 19 s~~~GV~-~~~~gkw~A~i~~~ 39 (72)
..+-||. ++..|.|..+|+.|
T Consensus 6 ~~~~Gv~~Qk~~g~~~vri~~p 27 (85)
T d2akja1 6 REYLGVHPQKQQGLSFVGLHIP 27 (85)
T ss_dssp CCCBEEEECSSTTEEEEEECCG
T ss_pred ccceEEeecCCCCeEEEEEEcC
Confidence 3588997 55689999999853
No 40
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.40 E-value=37 Score=17.00 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=12.8
Q ss_pred CCCCCHHHHHHHHHHH
Q 041752 48 GIFNITKEAARAYAEA 63 (72)
Q Consensus 48 G~f~t~eeAa~AYd~a 63 (72)
=.|.++++|..|.+..
T Consensus 52 V~f~~~~~A~~ai~~l 67 (89)
T d2cqba1 52 VEFELAEDAAAAIDNM 67 (89)
T ss_dssp ECCSSHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHc
Confidence 3699999999887653
Done!