BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041758
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 15/138 (10%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEEL-------VEELTSHQTNSQVPVIDLDGVRGN--KLEE 83
V+ L +GI++IP+ +IRP EEL +EE + QVP IDL + + K+ E
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEE--KKEDGPQVPTIDLKNIESDDEKIRE 63
Query: 84 -IVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRA--RNV 140
+++++ A+ WG ++NHGIP +++E + + +F VE +KE Y D+A +
Sbjct: 64 NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVE-EKEKYANDQATGKIQ 122
Query: 141 RFNSNFDLHYSRTANWRD 158
+ S + S W D
Sbjct: 123 GYGSKLANNASGQLEWED 140
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 15/138 (10%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEEL-------VEELTSHQTNSQVPVIDLDGVRGN--KLEE 83
V+ L +GI++IP+ +IRP EEL +EE + QVP IDL + + K+ E
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEE--KKEDGPQVPTIDLKNIESDDEKIRE 64
Query: 84 -IVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRA--RNV 140
+++++ A+ WG ++NHGIP +++E + + +F VE +KE Y D+A +
Sbjct: 65 NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVE-EKEKYANDQATGKIQ 123
Query: 141 RFNSNFDLHYSRTANWRD 158
+ S + S W D
Sbjct: 124 GYGSKLANNASGQLEWED 141
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 15/138 (10%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEEL-------VEELTSHQTNSQVPVIDLDGVRGNK---LE 82
V+ L +GI++IP+ +IRP EEL +EE + QVP IDL + + E
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEE--KKEDGPQVPTIDLKNIESDDEKIRE 64
Query: 83 EIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRA--RNV 140
+++++ A+ WG ++NHGIP ++ E + + +F VE +KE Y D+A +
Sbjct: 65 NCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVE-EKEKYANDQATGKIQ 123
Query: 141 RFNSNFDLHYSRTANWRD 158
+ S + S W D
Sbjct: 124 GYGSKLANNASGQLEWED 141
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 69 PVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEI 113
P+I LD V G + + ++ A E WGFF++VNHGIP V + +
Sbjct: 5 PIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTV 49
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 64 TNSQVPVIDLDGVRGNKLE---EIVDQVRAAAETWGFFQVVNHGIPLNVLEE 112
+ + VP ID+ + G+ + Q+ AA+ GFF VNHGI + L +
Sbjct: 5 SKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ 56
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 64 TNSQVPVIDLDGVRGNKLE---EIVDQVRAAAETWGFFQVVNHGIPLNVLEE 112
+ + VP ID+ + G+ + Q+ AA+ GFF VNHGI + L +
Sbjct: 5 SKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ 56
>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate
Kinase From Bacillus Stearothermophilus At 1.65
Angstroms
Length = 394
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 70 VIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKK 129
V D GV N LE++ + + + F + + H + ++LEE +EL K
Sbjct: 198 VKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEE----------DKIELAK 247
Query: 130 EFYTRDRARNVRFNSNFDL 148
F + + + VRF D+
Sbjct: 248 SFMEKAKEKGVRFYMPVDV 266
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 102 NHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVRFNSNFDLHYSRTANWRDTLT 161
+HG PL EE+I +K EQ + +A +RF S +L A W+D L
Sbjct: 258 SHGAPLG--EEVI---KKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLE 312
Query: 162 ISA-------LASTDLDPNEYPE 177
SA L + D + YP+
Sbjct: 313 KSAKKELLERLLNPDFNKIAYPD 335
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 102 NHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVRFNSNFDLHYSRTANWRDTLT 161
+HG PL EE+I +K EQ + +A +RF S +L A W+D L
Sbjct: 255 SHGAPLG--EEVI---KKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLE 309
Query: 162 ISA-------LASTDLDPNEYPE 177
SA L + D + YP+
Sbjct: 310 KSAKKELLERLLNPDFNKIAYPD 332
>pdb|1EV4|A Chain A, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y
With Gso3 Bound
pdb|1EV4|C Chain C, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y
With Gso3 Bound
pdb|1EV4|D Chain D, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y
With Gso3 Bound
Length = 221
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEELVEELT--SHQTNSQVPVIDLDGVRGNKLEEIVDQVRA 90
++ L+ A V FI+ PE+L E+L + QVP++++DG++ + I++ +
Sbjct: 18 IRFLLAAAGVEFDEKFIQSPEDL-EKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIAT 76
Query: 91 AAETWG 96
+ +G
Sbjct: 77 KYDLYG 82
>pdb|1EV9|A Chain A, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|C Chain C, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|D Chain D, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
Length = 221
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEELVEELT--SHQTNSQVPVIDLDGVRGNKLEEIVDQVRA 90
++ L+ A V FI+ PE+L E+L + QVP++++DG++ + I++ +
Sbjct: 18 IRFLLAAAGVEFDEKFIQSPEDL-EKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIAT 76
Query: 91 AAETWG 96
+ +G
Sbjct: 77 KYDLYG 82
>pdb|1F3A|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Gsh
pdb|1F3A|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Gsh
Length = 222
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEELVEELT--SHQTNSQVPVIDLDGVRGNKLEEIVDQVRA 90
++ L+ A V FI+ PE+L E+L + QVP++++DG++ + I++ +
Sbjct: 18 IRWLLAAAGVEFEEKFIQSPEDL-EKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIAT 76
Query: 91 AAETWG 96
+ +G
Sbjct: 77 KYDLYG 82
>pdb|1F3B|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With
Glutathione Conjugate Of Benzo[a]pyrene Epoxide
pdb|1F3B|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With
Glutathione Conjugate Of Benzo[a]pyrene Epoxide
Length = 222
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEELVEELT--SHQTNSQVPVIDLDGVRGNKLEEIVDQVRA 90
++ L+ A V FI+ PE+L E+L + QVP++++DG++ + I++ +
Sbjct: 18 IRWLLAAAGVEFEEKFIQSPEDL-EKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIAT 76
Query: 91 AAETWG 96
+ +G
Sbjct: 77 KYDLYG 82
>pdb|2VC6|A Chain A, Structure Of Mosa From S. Meliloti With Pyruvate Bound
pdb|2VC6|B Chain B, Structure Of Mosa From S. Meliloti With Pyruvate Bound
Length = 292
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 9 TTTQTVTDY--DRAKEVQAFD----DTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSH 62
+ T VT + DR EV D + G GLV G + E V E+T
Sbjct: 5 SITALVTPFADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIK 64
Query: 63 QTNSQVPVIDLDGVRGNKLEEIVDQVRAA 91
N +VPVI G N E + VR A
Sbjct: 65 TANGRVPVI--AGAGSNSTAEAIAFVRHA 91
>pdb|1ML6|A Chain A, Crystal Structure Of Mgsta2-2 In Complex With The
Glutathione Conjugate Of Benzo[a]pyrene-7(R),8(S)-Diol-
9(S),10(R)-Epoxide
pdb|1ML6|B Chain B, Crystal Structure Of Mgsta2-2 In Complex With The
Glutathione Conjugate Of Benzo[a]pyrene-7(R),8(S)-Diol-
9(S),10(R)-Epoxide
Length = 221
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEELVEELT--SHQTNSQVPVIDLDGVRGNKLEEIVDQVRA 90
++ L+ A V FI+ PE+L E+L + QVP++++DG++ + I++ +
Sbjct: 18 IRWLLAAAGVEFEEKFIQSPEDL-EKLKKDGNLMFDQVPMVEIDGMKLVQTRAILNYIAT 76
Query: 91 AAETWG 96
+ +G
Sbjct: 77 KYDLYG 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,482,718
Number of Sequences: 62578
Number of extensions: 223970
Number of successful extensions: 718
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 707
Number of HSP's gapped (non-prelim): 21
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)