Query 041758
Match_columns 183
No_of_seqs 192 out of 1889
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 17:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gp6_A Leucoanthocyanidin diox 100.0 1.7E-31 5.7E-36 230.7 11.4 152 30-182 4-168 (356)
2 3oox_A Putative 2OG-Fe(II) oxy 99.9 2.4E-24 8.3E-29 182.7 8.6 97 65-163 4-102 (312)
3 1w9y_A 1-aminocyclopropane-1-c 99.9 2.1E-24 7.3E-29 183.7 6.7 109 66-182 2-113 (319)
4 1dcs_A Deacetoxycephalosporin 99.9 5.8E-24 2E-28 180.4 5.9 109 66-182 3-118 (311)
5 3on7_A Oxidoreductase, iron/as 99.9 6.6E-23 2.3E-27 171.6 8.6 102 66-183 2-106 (280)
6 1odm_A Isopenicillin N synthas 99.9 7.4E-22 2.5E-26 168.7 10.2 92 65-166 6-109 (331)
7 2dbn_A Hypothetical protein YB 66.4 2.8 9.6E-05 36.9 2.3 57 63-123 96-152 (461)
8 4ay7_A Methylcobalamin\: coenz 58.5 18 0.0006 29.9 5.8 43 80-122 302-348 (348)
9 2opi_A L-fuculose-1-phosphate 45.6 6.9 0.00023 30.3 1.1 36 67-105 125-160 (212)
10 1m5a_B Insulin B chain; alpha 45.6 21 0.00072 19.3 2.8 19 82-100 9-27 (30)
11 2fk5_A Fuculose-1-phosphate al 43.6 12 0.00041 28.7 2.3 36 67-105 117-153 (200)
12 3o2g_A Gamma-butyrobetaine dio 41.6 16 0.00055 30.9 2.9 52 67-123 122-173 (388)
13 1e4c_P L-fuculose 1-phosphate 38.8 10 0.00035 29.3 1.1 37 66-105 121-157 (215)
14 1otj_A Alpha-ketoglutarate-dep 38.7 39 0.0013 26.7 4.7 51 64-120 14-64 (283)
15 2irp_A Putative aldolase class 37.9 18 0.00062 27.6 2.5 36 66-105 138-176 (208)
16 2do1_A Nuclear protein HCC-1; 36.0 37 0.0013 20.8 3.2 32 84-118 14-45 (55)
17 1pvt_A Sugar-phosphate aldolas 35.2 14 0.00047 29.0 1.4 37 66-105 160-196 (238)
18 2v9l_A Rhamnulose-1-phosphate 34.3 14 0.00048 29.8 1.3 36 67-105 179-214 (274)
19 3jsy_A Acidic ribosomal protei 33.8 69 0.0024 24.8 5.3 39 81-119 5-44 (213)
20 1oih_A Putative alkylsulfatase 33.1 55 0.0019 26.1 4.8 53 65-123 25-78 (301)
21 3pnt_A NAD+-glycohydrolase; gl 28.7 83 0.0028 24.8 4.8 51 43-104 190-240 (268)
22 3ocr_A Class II aldolase/adduc 26.5 25 0.00084 28.4 1.5 37 67-105 156-192 (273)
23 1zav_A 50S ribosomal protein L 26.2 1.3E+02 0.0045 22.4 5.6 40 81-120 8-48 (180)
24 3iz5_s 60S acidic ribosomal pr 25.8 1.3E+02 0.0046 24.7 6.0 39 81-119 11-50 (319)
25 3u5i_q A0, L10E, 60S acidic ri 23.7 1.2E+02 0.0042 24.9 5.4 39 81-119 8-47 (312)
26 4f3y_A DHPR, dihydrodipicolina 23.7 45 0.0016 26.8 2.6 40 83-122 110-149 (272)
27 3ijp_A DHPR, dihydrodipicolina 22.2 60 0.0021 26.4 3.1 40 83-122 125-164 (288)
28 3pvj_A Alpha-ketoglutarate-dep 22.0 94 0.0032 24.7 4.2 52 64-121 12-63 (277)
29 3qy9_A DHPR, dihydrodipicolina 21.9 51 0.0018 26.0 2.6 41 82-122 88-128 (243)
30 4f21_A Carboxylesterase/phosph 21.5 1.8E+02 0.0062 22.2 5.8 40 83-122 200-245 (246)
31 3j21_k Acidic ribosomal protei 20.9 1.4E+02 0.0049 24.7 5.2 39 81-119 8-47 (339)
32 2j01_J 50S ribosomal protein L 20.9 2.3E+02 0.0078 20.8 6.0 39 81-119 6-46 (173)
No 1
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=99.97 E-value=1.7e-31 Score=230.68 Aligned_cols=152 Identities=25% Similarity=0.456 Sum_probs=121.1
Q ss_pred cccHHHHHHCCCCCCCCcccCCCCCchhhhc---cC--CCCCCcceeeCCCCCC-C--cHHHHHHHHHHHHHHcceEEEE
Q 041758 30 KAGVKGLVDAGIVNIPRIFIRPPEELVEELT---SH--QTNSQVPVIDLDGVRG-N--KLEEIVDQVRAAAETWGFFQVV 101 (183)
Q Consensus 30 ~~~v~~l~~~g~~~vP~~yv~p~~~~p~~~~---~~--~~~~~IPvIDls~l~~-~--~~~~~~~~l~~A~~~~GFF~v~ 101 (183)
..+||+|+++|+.+||++|++|+++++.... .. .....||||||+.+.+ + .+.+++++|++||++||||||+
T Consensus 4 ~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~ 83 (356)
T 1gp6_A 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI 83 (356)
T ss_dssp CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred cccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEe
Confidence 4689999999999999999999887765311 00 0123699999999864 2 4678999999999999999999
Q ss_pred eCCCChhHHHHHHHHHHHHhcCCHHHHHhhhccCC-CCccccccCCCCCCCCCCCceeeeeeeeecCCC-CCCCCCC---
Q 041758 102 NHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDR-ARNVRFNSNFDLHYSRTANWRDTLTISALASTD-LDPNEYP--- 176 (183)
Q Consensus 102 nHGI~~~li~~~~~~~~~FF~lp~eeK~~~~~~~~-~~~~GY~~~~~~~~~~~~dwkE~~~~~~~~P~~-~~~~~~P--- 176 (183)
||||+.++++++++.+++||+||.|+|+++..... ....||+........+..||+|+|.+. ..|.. ..++.||
T Consensus 84 nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~-~~p~~~~~~~~wP~~~ 162 (356)
T 1gp6_A 84 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHL-AYPEEKRDLSIWPKTP 162 (356)
T ss_dssp SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEE-EESGGGCCGGGSCCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeee-cCCccccccccCCCcc
Confidence 99999999999999999999999999999864433 357899877655566789999999998 77742 1223454
Q ss_pred chhhcc
Q 041758 177 EVCRYI 182 (183)
Q Consensus 177 ~~~re~ 182 (183)
+.||++
T Consensus 163 ~~fr~~ 168 (356)
T 1gp6_A 163 SDYIEA 168 (356)
T ss_dssp TTHHHH
T ss_pred hhhhHH
Confidence 578875
No 2
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=99.90 E-value=2.4e-24 Score=182.68 Aligned_cols=97 Identities=10% Similarity=0.167 Sum_probs=81.4
Q ss_pred CCCcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCCChhHHHHHHHHHHHHhcCCHHHHHhhhccCCCCcccccc
Q 041758 65 NSQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVRFNS 144 (183)
Q Consensus 65 ~~~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~~~~FF~lp~eeK~~~~~~~~~~~~GY~~ 144 (183)
...||||||+.+.. .+.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... .....||..
T Consensus 4 ~~~iPvIDls~~~~-~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~-~~~~~Gy~~ 81 (312)
T 3oox_A 4 TSAIDPVSFSLYAK-DFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGV-KGGARGYIP 81 (312)
T ss_dssp CCSSCCEETHHHHH-CHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSS-GGGTSEEEC
T ss_pred CCCCCeEEChHhcc-cHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccC-CCCcccccc
Confidence 45799999997643 4778999999999999999999999999999999999999999999999998643 445689964
Q ss_pred CC--CCCCCCCCCceeeeeee
Q 041758 145 NF--DLHYSRTANWRDTLTIS 163 (183)
Q Consensus 145 ~~--~~~~~~~~dwkE~~~~~ 163 (183)
.. ........||+|+|.++
T Consensus 82 ~g~e~~~~~~~~D~kE~~~~~ 102 (312)
T 3oox_A 82 FGVETAKGADHYDLKEFWHMG 102 (312)
T ss_dssp CCCCCSTTSCSCCCCEEEEEC
T ss_pred ccceecCCCCCCCceeeeEee
Confidence 33 22334678999999986
No 3
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=99.90 E-value=2.1e-24 Score=183.75 Aligned_cols=109 Identities=23% Similarity=0.430 Sum_probs=88.3
Q ss_pred CCcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCCChhHHHHHHHHHHHHhcCCHHHHHhhhccCCCCccccccC
Q 041758 66 SQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVRFNSN 145 (183)
Q Consensus 66 ~~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~~~~FF~lp~eeK~~~~~~~~~~~~GY~~~ 145 (183)
..||||||+.+....+.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.. . ..||+..
T Consensus 2 ~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~-~---~~Gy~~~ 77 (319)
T 1w9y_A 2 ENFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELV-A---SKALEGV 77 (319)
T ss_dssp CCCCEEEGGGGGSTTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHTTC
T ss_pred CCCCEEECcccCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcc-C---CCCCCcc
Confidence 36999999987533578899999999999999999999999999999999999999999999999753 2 3488654
Q ss_pred CCCCCCCCCCceeeeeeeeecCCCCCCCCC---Cchhhcc
Q 041758 146 FDLHYSRTANWRDTLTISALASTDLDPNEY---PEVCRYI 182 (183)
Q Consensus 146 ~~~~~~~~~dwkE~~~~~~~~P~~~~~~~~---P~~~re~ 182 (183)
. ...+..||+|+|.+. ..|.. .++.| |+.||++
T Consensus 78 ~--~e~~~~d~ke~~~~~-~~p~~-~~~~wP~~~~~fr~~ 113 (319)
T 1w9y_A 78 Q--AEVTDMDWESTFFLK-HLPIS-NISEVPDLDEEYREV 113 (319)
T ss_dssp C--CCGGGCCCCEEEEEE-EESCC-GGGGCTTCCHHHHHH
T ss_pred c--ccCCCCChhhheeee-cCCcc-cccccccchhHHHHH
Confidence 2 224678999999999 77742 12345 4678875
No 4
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=99.89 E-value=5.8e-24 Score=180.39 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=79.4
Q ss_pred CCcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCCChhHHHHHHHHHHHHhcCC-HHHHHhhhccCCCCcccccc
Q 041758 66 SQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQD-VELKKEFYTRDRARNVRFNS 144 (183)
Q Consensus 66 ~~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~~~~FF~lp-~eeK~~~~~~~~~~~~GY~~ 144 (183)
..||||||+.+.++... ++|++||++||||||+||||+.++++++++.+++||+|| .|+|+++.........||+.
T Consensus 3 ~~iPvIDls~l~~~~~~---~~l~~A~~~~GFf~l~nHGi~~~l~~~~~~~~~~fF~lP~~e~K~~~~~~~~~~~~Gy~~ 79 (311)
T 1dcs_A 3 TTVPTFSLAELQQGLHQ---DEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTG 79 (311)
T ss_dssp CCCCEEEHHHHHTTCSH---HHHHHHHHHTCEEEEESSSCCHHHHHHHHHHHHHHHHHCCHHHHHHTBCSSCCSSSEEEE
T ss_pred CCCcEEEchhhcCCCHH---HHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCcHHHhHHhhccCCCCCCceee
Confidence 46999999876432111 399999999999999999999999999999999999999 99999986544455789986
Q ss_pred CCCC------CCCCCCCceeeeeeeeecCCCCCCCCCCchhhcc
Q 041758 145 NFDL------HYSRTANWRDTLTISALASTDLDPNEYPEVCRYI 182 (183)
Q Consensus 145 ~~~~------~~~~~~dwkE~~~~~~~~P~~~~~~~~P~~~re~ 182 (183)
.... ...+..||+|+|.+. ..|. .|| |+.||++
T Consensus 80 ~~~e~~~~~~~~~~~~d~~E~~~~~-~~~n-~wP---~~~fr~~ 118 (311)
T 1dcs_A 80 LESESTAQITNTGSYSDYSMCYSMG-TADN-LFP---SGDFERI 118 (311)
T ss_dssp C-----------------CEEEEEC-SSSC-CCS---CHHHHHH
T ss_pred ccccccccccCCCCCCCcceeeecc-CCCC-CCC---ChHHHHH
Confidence 5432 335678999999998 5532 233 5788875
No 5
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=99.88 E-value=6.6e-23 Score=171.63 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=79.6
Q ss_pred CCcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCCChhHHHHHHHHHHHHhcCCHHHHHhhhccCCCCccccccC
Q 041758 66 SQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQDVELKKEFYTRDRARNVRFNSN 145 (183)
Q Consensus 66 ~~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~~~~FF~lp~eeK~~~~~~~~~~~~GY~~~ 145 (183)
+.||||||+.. ..+++|.+||++||||||+||||+.++++++++.+++||+| |+|+++. ..+....||+..
T Consensus 2 ~~IPvIDls~~------~~~~~l~~A~~~~GFF~v~nHGi~~~li~~~~~~~~~FF~l--e~K~k~~-~~~~~~~GY~~~ 72 (280)
T 3on7_A 2 MKLETIDYRAA------DSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFM-FNRETHDGFFPA 72 (280)
T ss_dssp --CCEEETTST------THHHHHHHHHHHHSEEEEESCSSCHHHHHHHHHHHHHHHTS--GGGGGGB-CCTTTCCEEECC
T ss_pred CCCCEEECCCh------hHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHhhh--HHHHHhc-cCCCCCCccccC
Confidence 46999999974 25799999999999999999999999999999999999998 8999975 445567899764
Q ss_pred C---CCCCCCCCCceeeeeeeeecCCCCCCCCCCchhhccC
Q 041758 146 F---DLHYSRTANWRDTLTISALASTDLDPNEYPEVCRYII 183 (183)
Q Consensus 146 ~---~~~~~~~~dwkE~~~~~~~~P~~~~~~~~P~~~re~~ 183 (183)
. ........||+|+|.+. |+ + .+|+.||+++
T Consensus 73 ~~~e~~~~~~~~D~kE~~~~~---p~---~-~~p~~fr~~~ 106 (280)
T 3on7_A 73 SISETAKGHTVKDIKEYYHVY---PW---G-RIPDSLRANI 106 (280)
T ss_dssp C--------CCCCSCEEEEEC---TT---S-CCCGGGHHHH
T ss_pred ccccccCCCCcccHHHHHhcC---CC---C-CCCHHHHHHH
Confidence 3 22334578999999865 42 1 4688999763
No 6
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=99.86 E-value=7.4e-22 Score=168.69 Aligned_cols=92 Identities=22% Similarity=0.331 Sum_probs=75.5
Q ss_pred CCCcceeeCCCCCC-C--cHHHHHHHHHHHHHHcceEEEEeCCCChhHHHHHHHHHHHH-hcCCHHHHHhhhccCCCCcc
Q 041758 65 NSQVPVIDLDGVRG-N--KLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKF-NEQDVELKKEFYTRDRARNV 140 (183)
Q Consensus 65 ~~~IPvIDls~l~~-~--~~~~~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~~~~F-F~lp~eeK~~~~~~~~~~~~ 140 (183)
...||||||+.+.. + .+.+++++|++||++||||||+|||| +++++++.+++| |+||.|+|+++.. .
T Consensus 6 ~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi---l~~~~~~~~~~F~F~lP~eeK~~~~~------~ 76 (331)
T 1odm_A 6 KANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQKTKEFHMSITPEEKWDLAI------R 76 (331)
T ss_dssp BCCCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCC---CHHHHHHHHHHHHHHCCHHHHHHHBC------T
T ss_pred CCCCCEEEchHhcCCChHHHHHHHHHHHHHHHhCCEEEEEccce---eHHHHHHHHHhccCCCCHHHHHhhhh------c
Confidence 35799999998753 2 56789999999999999999999999 999999999999 9999999999853 4
Q ss_pred ccccCCC--CCC------CCCCCceeeeeeeeec
Q 041758 141 RFNSNFD--LHY------SRTANWRDTLTISALA 166 (183)
Q Consensus 141 GY~~~~~--~~~------~~~~dwkE~~~~~~~~ 166 (183)
||..... ... .++.||+|+|.+. ..
T Consensus 77 Gy~~~~~e~~~~~~~~~~~~~~d~kE~~~~~-~~ 109 (331)
T 1odm_A 77 AYNKEHQDQVRAGYYLSIPGKKAVESFCYLN-PN 109 (331)
T ss_dssp TTCTTCTTCSSSEEECCBTTTBCCEEEEECC-TT
T ss_pred CCCcCCccccccccccccCCCCChhheEecc-cC
Confidence 6654321 112 2578999999988 53
No 7
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=66.40 E-value=2.8 Score=36.88 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=42.6
Q ss_pred CCCCCcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCCChhHHHHHHHHHHHHhcC
Q 041758 63 QTNSQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQ 123 (183)
Q Consensus 63 ~~~~~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~~~~FF~l 123 (183)
.+...||.||++++.. ..+.++.....++.|++.|.|+ ||.+......+...+|.+.
T Consensus 96 ~G~~~iP~i~f~di~~---~~~s~~~~~~ir~rG~vVIRgv-vp~e~A~~~~~~~~~yl~~ 152 (461)
T 2dbn_A 96 QGDAVWPVLSYADIKA---GHVTAEQREQIKRRGCAVIKGH-FPREQALGWDQSMLDYLDR 152 (461)
T ss_dssp TTCCSSCEEEHHHHHH---TCCCHHHHHHHHHHSEEEEETS-SCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcceecHHHhcC---CCCCHHHHHHHHhccEEEECCC-CCHHHHHHHHHHHHHHHHh
Confidence 4556899999987631 1233566778899999977776 9999888888888887643
No 8
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=58.50 E-value=18 Score=29.90 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHHHcceEEEEeCCCC----hhHHHHHHHHHHHHhc
Q 041758 80 KLEEIVDQVRAAAETWGFFQVVNHGIP----LNVLEEIIEGIRKFNE 122 (183)
Q Consensus 80 ~~~~~~~~l~~A~~~~GFF~v~nHGI~----~~li~~~~~~~~~FF~ 122 (183)
..+++.+++.+.++.-||..=.+|||+ .+-+..+.+++++|++
T Consensus 302 ~~e~i~~~v~~~l~~~g~I~~~Ghgi~p~tp~env~a~v~av~ey~A 348 (348)
T 4ay7_A 302 PVDKIKAEAKEALEGGIDVLAPGCGIAPMTPLENVKALVAARDEFYA 348 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSSCCTTCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhCCCCEEeCCCccCCCCCHHHHHHHHHHHHHhcC
Confidence 355666777788888888777789974 5789999999999975
No 9
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron}
Probab=45.65 E-value=6.9 Score=30.26 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=27.8
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCC
Q 041758 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (183)
Q Consensus 67 ~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI 105 (183)
.||+++..... ..+.++.+.+++.+.-.+.+-|||+
T Consensus 125 ~v~~~~y~~~g---~~~la~~i~~~l~~~~avll~nHG~ 160 (212)
T 2opi_A 125 EIPVIPYYRPG---SPELAKAVVEAMLKHNSVLLTNHGQ 160 (212)
T ss_dssp CCCEECCCCTT---CHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CeEEEcCCCCC---cHHHHHHHHHHhccCCEEEEcCCCc
Confidence 69999886542 2456778888888778889999995
No 10
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=45.62 E-value=21 Score=19.27 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHcceEEE
Q 041758 82 EEIVDQVRAAAETWGFFQV 100 (183)
Q Consensus 82 ~~~~~~l~~A~~~~GFF~v 100 (183)
...++.|.-.|.+-|||+.
T Consensus 9 s~LVdaL~~vCgdRGF~~~ 27 (30)
T 1m5a_B 9 SHLVEALYLVCGERGFFYT 27 (30)
T ss_dssp HHHHHHHHHHHGGGCEEEC
T ss_pred HHHHHHHHHHhccCccccC
Confidence 4688899999999999973
No 11
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Probab=43.56 E-value=12 Score=28.69 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=27.6
Q ss_pred Cccee-eCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCC
Q 041758 67 QVPVI-DLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (183)
Q Consensus 67 ~IPvI-Dls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI 105 (183)
.||++ ++.... ..+.++.+.+++.+.-.+.+-|||+
T Consensus 117 ~ip~~~~y~~~g---~~ela~~i~~~l~~~~avll~nHG~ 153 (200)
T 2fk5_A 117 EVPVLAPKTVSA---TEEAALSVAEALREHRACLLRGHGA 153 (200)
T ss_dssp CEEEECCSCCSS---SHHHHHHHHHHHHHCSEEEETTTEE
T ss_pred CceEecCCCCCC---cHHHHHHHHHHhCcCCEEEECCCCc
Confidence 69999 665542 2467778888888888899999995
No 12
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=41.55 E-value=16 Score=30.89 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=38.5
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCCChhHHHHHHHHHHHHhcC
Q 041758 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNEQ 123 (183)
Q Consensus 67 ~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~~~~FF~l 123 (183)
.+|-||++.+.. ..+.+.++..++.++|+..+.|-.++.+. ..+.++.|=.+
T Consensus 122 ~~~~~~~~~~l~--~d~~~~~~~~~l~~~Gvv~frg~~~~~~~---~~~~a~~~G~l 173 (388)
T 3o2g_A 122 QLPTLDFEDVLR--YDEHAYKWLSTLKKVGIVRLTGASDKPGE---VSKLGKRMGFL 173 (388)
T ss_dssp CCCEEEHHHHHH--CHHHHHHHHHHHHHHSEEEEECCCSSTTH---HHHHHHHHSCC
T ss_pred CCCccCHHHHhc--CHHHHHHHHHHHHhcCEEEEeCCCCCHHH---HHHHHHHhCCC
Confidence 689999976542 24677899999999999999998887544 34556666443
No 13
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=38.75 E-value=10 Score=29.34 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=27.9
Q ss_pred CCcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCC
Q 041758 66 SQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (183)
Q Consensus 66 ~~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI 105 (183)
..||++++.... ..+.++.+.+++.+.-.+.+-|||+
T Consensus 121 ~~ip~~~y~~~g---~~~la~~i~~~l~~~~avll~nHG~ 157 (215)
T 1e4c_P 121 NSIPCAPYATFG---TRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_dssp SCBCEECCCCTT---CHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CCcceeeCCCCC---cHHHHHHHHHHhccCCEEEEcCCCc
Confidence 369999886542 2356678888887778888999995
No 14
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A
Probab=38.72 E-value=39 Score=26.70 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=36.8
Q ss_pred CCCCcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCCChhHHHHHHHHHHHH
Q 041758 64 TNSQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKF 120 (183)
Q Consensus 64 ~~~~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~~~~F 120 (183)
.+.+|+-|||+...+ .+...+|..++.++|+..+.+-.++.+.. .+.++.|
T Consensus 14 ~Gaei~gvdl~~~l~---~~~~~~l~~~l~~~Gvv~frg~~~~~~~~---~~~~~~~ 64 (283)
T 1otj_A 14 IGAQISGADLTRPLS---DNQFEQLYHAVLRHQVVFLRDQAITPQQQ---RALAQRF 64 (283)
T ss_dssp SCEEEESCCSSSCCC---HHHHHHHHHHHHHHSEEEECSCCCCHHHH---HHHHHTT
T ss_pred ceEEEECCCcCccCC---HHHHHHHHHHHHHCCEEEECCCCCCHHHH---HHHHHHh
Confidence 355788889987432 34678999999999999999888765433 3444554
No 15
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic mechanism; 2.40A {Aquifex aeolicus}
Probab=37.90 E-value=18 Score=27.64 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=27.0
Q ss_pred CCcceeeCCCCCCCcHHHHHHHHHHHHHHcc---eEEEEeCCC
Q 041758 66 SQVPVIDLDGVRGNKLEEIVDQVRAAAETWG---FFQVVNHGI 105 (183)
Q Consensus 66 ~~IPvIDls~l~~~~~~~~~~~l~~A~~~~G---FF~v~nHGI 105 (183)
..||+++.. . ...+.++.+.+++.+.+ .+.+-|||+
T Consensus 138 ~~vp~~~~~-~---g~~~La~~i~~~l~~~~~~~avll~nHG~ 176 (208)
T 2irp_A 138 IKIPIFPNE-Q---NIPLLAKEVENYFKTSEDKYGFLIRGHGL 176 (208)
T ss_dssp CEEEEECCC-S---CHHHHHHHHHHHHHHCSCCSCEEETTTEE
T ss_pred cceeeecCC-C---CHHHHHHHHHHHHhcCCCceEEEEcCCCC
Confidence 368888763 2 35677888888888765 788899995
No 16
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=36.04 E-value=37 Score=20.81 Aligned_cols=32 Identities=9% Similarity=0.270 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcceEEEEeCCCChhHHHHHHHHHH
Q 041758 84 IVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIR 118 (183)
Q Consensus 84 ~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~~~ 118 (183)
.+.+|...|+.+| +.--|.-.+|++++.....
T Consensus 14 kV~eLK~~L~~rG---L~~~G~KaeLieRL~~~l~ 45 (55)
T 2do1_A 14 KLAELKQECLARG---LETKGIKQDLIHRLQAYLE 45 (55)
T ss_dssp CHHHHHHHHHHHT---CCCCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcC---CCCCCcHHHHHHHHHHHHh
Confidence 5688999999999 3456777788888776543
No 17
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Probab=35.22 E-value=14 Score=29.04 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=27.9
Q ss_pred CCcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCC
Q 041758 66 SQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (183)
Q Consensus 66 ~~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI 105 (183)
..||++++.... ..+.++.+.+++++.-.+.+-|||+
T Consensus 160 ~~v~~~~y~~~g---~~ela~~i~~~l~~~~avll~nHG~ 196 (238)
T 1pvt_A 160 QGISVVEFEKPG---SVELGLKTVEKSEGKDAVLWDKHGV 196 (238)
T ss_dssp SCCEEECCCSTT---CHHHHHHHHHHTSSCSEEEETTSCE
T ss_pred CCceEecCCCCC---cHHHHHHHHHHhccCCEEEEcCCCc
Confidence 369999886542 2456777888888888889999995
No 18
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Probab=34.27 E-value=14 Score=29.77 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=28.1
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCC
Q 041758 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (183)
Q Consensus 67 ~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI 105 (183)
.||++++.... ..+.++.+.+++++.-.+.+-|||+
T Consensus 179 ~v~v~~y~~~g---~~ela~~i~~~l~~~~avll~nHG~ 214 (274)
T 2v9l_A 179 GVGILPWMVPG---TDAIGQATAQEMQKHSLVLWPFHGV 214 (274)
T ss_dssp CEEECCCCCSS---SHHHHHHHHHHHTTCSEEEETTTEE
T ss_pred ceeEecCCCCC---CHHHHHHHHHHHccCCEEEEcCCCc
Confidence 59998875542 2467788888888888899999995
No 19
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=33.80 E-value=69 Score=24.78 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHcceEEEEe-CCCChhHHHHHHHHHHH
Q 041758 81 LEEIVDQVRAAAETWGFFQVVN-HGIPLNVLEEIIEGIRK 119 (183)
Q Consensus 81 ~~~~~~~l~~A~~~~GFF~v~n-HGI~~~li~~~~~~~~~ 119 (183)
..+.+++|.+.+.++..+.|++ +|+....++++++..++
T Consensus 5 K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 44 (213)
T 3jsy_A 5 KIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRD 44 (213)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhC
Confidence 3456777777777777776666 57777777777777664
No 20
>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*
Probab=33.05 E-value=55 Score=26.11 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=38.1
Q ss_pred CCCcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCC-CChhHHHHHHHHHHHHhcC
Q 041758 65 NSQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHG-IPLNVLEEIIEGIRKFNEQ 123 (183)
Q Consensus 65 ~~~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHG-I~~~li~~~~~~~~~FF~l 123 (183)
+.+|+-|||+...+ .+..++|+.++.++|+..+.+-. ++. ++..+.++.|=.+
T Consensus 25 Gaei~gvdl~~~l~---~~~~~~l~~~l~~~Gvv~fRg~~~l~~---~~~~~~~~~fG~l 78 (301)
T 1oih_A 25 GAEIRGVKLSPDLD---AATVEAIQAALVRHKVIFFRGQTHLDD---QSQEGFAKLLGEP 78 (301)
T ss_dssp CEEEESCCCCTTCC---HHHHHHHHHHHHHHSEEEECCCTTCCH---HHHHHHHHTTSCB
T ss_pred ceEEeCCCccccCC---HHHHHHHHHHHHHCCEEEECCCCCCCH---HHHHHHHHHhCCC
Confidence 45688889987432 34678999999999999998877 774 4455556665443
No 21
>3pnt_A NAD+-glycohydrolase; glycohydrolase, NAD+, virulence factor, hydrolase-hydrolase complex; 2.80A {Streptococcus pyogenes}
Probab=28.74 E-value=83 Score=24.83 Aligned_cols=51 Identities=18% Similarity=0.375 Sum_probs=34.6
Q ss_pred CCCCcccCCCCCchhhhccCCCCCCcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCC
Q 041758 43 NIPRIFIRPPEELVEELTSHQTNSQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHG 104 (183)
Q Consensus 43 ~vP~~yv~p~~~~p~~~~~~~~~~~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHG 104 (183)
.||..=-|.-..... +....-.|.||.+.+. .+.+..|.+.-|+|-++|--
T Consensus 190 NIPG~qTwaGkni~~----SeSELimPSId~kgls-------~~dvLaaIe~kGYyEI~nPt 240 (268)
T 3pnt_A 190 NIPGCQTWSGKHIEN----SESELIFPSISVKDLK-------SKAVLAEIDAKGYFEIIDPT 240 (268)
T ss_dssp CCTTTCCCCTTCGGG----CCCCEEECEEECTTCC-------HHHHHHHHHHHSCCEEESCE
T ss_pred CCCcccccccccccc----cccceeecccccCCCc-------HHHHHHHHhhcCeEEecCCe
Confidence 466655555443321 3445568999999984 25667778889999999854
No 22
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, lyase; 1.95A {Pseudomonas syringae PV}
Probab=26.51 E-value=25 Score=28.42 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=28.1
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCC
Q 041758 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (183)
Q Consensus 67 ~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI 105 (183)
.||++++..+.. ..+..+.|.+++.+.-.+.|-|||+
T Consensus 156 ~v~~~~y~~~~~--~~el~~~i~~~l~~~~avlL~nHG~ 192 (273)
T 3ocr_A 156 RVAYHGYEGIAL--DLSERERLVADLGDKSVMILRNHGL 192 (273)
T ss_dssp TEEEECCCCSSC--CHHHHHHHHHHHTTCSEEEETTTEE
T ss_pred CEEEECCCCCCC--CHHHHHHHHHHhCcCCEEEEcCCce
Confidence 588888876421 2456678888888888999999995
No 23
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=26.23 E-value=1.3e+02 Score=22.36 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHcceEEEEe-CCCChhHHHHHHHHHHHH
Q 041758 81 LEEIVDQVRAAAETWGFFQVVN-HGIPLNVLEEIIEGIRKF 120 (183)
Q Consensus 81 ~~~~~~~l~~A~~~~GFF~v~n-HGI~~~li~~~~~~~~~F 120 (183)
....+++|.+.++++..+.|++ +|++...+.+++...++-
T Consensus 8 K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~ 48 (180)
T 1zav_A 8 KELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREK 48 (180)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 4567888999999888888886 579988888888877653
No 24
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=25.81 E-value=1.3e+02 Score=24.74 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHcceEEEEe-CCCChhHHHHHHHHHHH
Q 041758 81 LEEIVDQVRAAAETWGFFQVVN-HGIPLNVLEEIIEGIRK 119 (183)
Q Consensus 81 ~~~~~~~l~~A~~~~GFF~v~n-HGI~~~li~~~~~~~~~ 119 (183)
..+.+++|.+.+.++..++|++ +|+....++++++..|+
T Consensus 11 K~~~v~el~e~l~~y~~v~vv~~~gl~v~ql~~LR~~lR~ 50 (319)
T 3iz5_s 11 KVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRG 50 (319)
T ss_dssp SSHHHHHHHHHHHHCSEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhC
Confidence 4578899999999998888887 68999999999998875
No 25
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=23.69 E-value=1.2e+02 Score=24.87 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHcceEEEEe-CCCChhHHHHHHHHHHH
Q 041758 81 LEEIVDQVRAAAETWGFFQVVN-HGIPLNVLEEIIEGIRK 119 (183)
Q Consensus 81 ~~~~~~~l~~A~~~~GFF~v~n-HGI~~~li~~~~~~~~~ 119 (183)
..+.+++|.+.+.++..+.|++ +|+....++++++..|+
T Consensus 8 K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~ 47 (312)
T 3u5i_q 8 KAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRG 47 (312)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence 4567888888888888877777 67888888888887764
No 26
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=23.68 E-value=45 Score=26.79 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcceEEEEeCCCChhHHHHHHHHHHHHhc
Q 041758 83 EIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNE 122 (183)
Q Consensus 83 ~~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 122 (183)
+..++|.++|++.+.++.-|-++-..++.++.+.+..+|.
T Consensus 110 ~~~~~L~~aa~~~~vv~a~N~s~Gv~l~~~~~~~aa~~l~ 149 (272)
T 4f3y_A 110 PQKAQLRAAGEKIALVFSANMSVGVNVTMKLLEFAAKQFA 149 (272)
T ss_dssp HHHHHHHHHTTTSEEEECSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccCCEEEECCCCHHHHHHHHHHHHHHHhcC
Confidence 3467899999999999999999999999999988888874
No 27
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=22.16 E-value=60 Score=26.42 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcceEEEEeCCCChhHHHHHHHHHHHHhc
Q 041758 83 EIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNE 122 (183)
Q Consensus 83 ~~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 122 (183)
+..++|..+|++.++|+.-|-.+-..++.++.+.+..+|.
T Consensus 125 e~~~~L~~aa~~~~~~~a~N~SiGv~ll~~l~~~aa~~l~ 164 (288)
T 3ijp_A 125 TEEAQIADFAKYTTIVKSGNMSLGVNLLANLVKRAAKALD 164 (288)
T ss_dssp HHHHHHHHHHTTSEEEECSCCCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCcCCEEEECCCcHHHHHHHHHHHHHHHhcC
Confidence 3457889999999999999999888999988888888875
No 28
>3pvj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, Fe(II) binding, oxidoreductas; 1.85A {Pseudomonas putida KT2440} SCOP: b.82.2.5 PDB: 3v15_A 3v17_A*
Probab=22.01 E-value=94 Score=24.66 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=37.7
Q ss_pred CCCCcceeeCCCCCCCcHHHHHHHHHHHHHHcceEEEEeCCCChhHHHHHHHHHHHHh
Q 041758 64 TNSQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFN 121 (183)
Q Consensus 64 ~~~~IPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~~~~FF 121 (183)
-+.+|.=|||+...+ .+..++|+.|+.++|...+.|-.++.+ +..+.++.|=
T Consensus 12 ~Gaei~gvdl~~~l~---~~~~~~l~~~l~~~gvv~fR~q~l~~~---~~~~fa~~fG 63 (277)
T 3pvj_A 12 LGAQISGVDISRDIS---AEERDAIEQALLQHQVLFLRDQPINPE---QQARFAARFG 63 (277)
T ss_dssp SCEEEESCCTTSCCC---HHHHHHHHHHHHHHSEEEESSCCCCHH---HHHHHHGGGS
T ss_pred eeEEEeCCCccccCC---HHHHHHHHHHHHHCCEEEECCCCCCHH---HHHHHHHHhC
Confidence 356788899987432 356789999999999999998888754 3344555543
No 29
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=21.88 E-value=51 Score=25.99 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcceEEEEeCCCChhHHHHHHHHHHHHhc
Q 041758 82 EEIVDQVRAAAETWGFFQVVNHGIPLNVLEEIIEGIRKFNE 122 (183)
Q Consensus 82 ~~~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 122 (183)
.+..++|.++|++.+.++--|-.+-..++.++.+.+..+|.
T Consensus 88 ~e~~~~l~~aa~~~~v~~a~N~S~Gv~l~~~~~~~aa~~l~ 128 (243)
T 3qy9_A 88 EKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAAVPLLD 128 (243)
T ss_dssp HHHHHHHHHHTTTSEEEECSSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCEEEECCccHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999998888773
No 30
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=21.46 E-value=1.8e+02 Score=22.18 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcce---EEE---EeCCCChhHHHHHHHHHHHHhc
Q 041758 83 EIVDQVRAAAETWGF---FQV---VNHGIPLNVLEEIIEGIRKFNE 122 (183)
Q Consensus 83 ~~~~~l~~A~~~~GF---F~v---~nHGI~~~li~~~~~~~~~FF~ 122 (183)
+..+++.+.+++.|+ |.. .+|+|+.+.++++.+..++-|+
T Consensus 200 ~~~~~~~~~L~~~g~~v~~~~y~g~gH~i~~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 200 VLGHDLSDKLKVSGFANEYKHYVGMQHSVCMEEIKDISNFIAKTFK 245 (246)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEESSCCSSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCCccCHHHHHHHHHHHHHHhC
Confidence 455677777888885 333 3699999888888776666554
No 31
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.90 E-value=1.4e+02 Score=24.74 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHcceEEEEe-CCCChhHHHHHHHHHHH
Q 041758 81 LEEIVDQVRAAAETWGFFQVVN-HGIPLNVLEEIIEGIRK 119 (183)
Q Consensus 81 ~~~~~~~l~~A~~~~GFF~v~n-HGI~~~li~~~~~~~~~ 119 (183)
..+.+.+|...+.++..++|++ +|+....++++++..|+
T Consensus 8 K~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~ 47 (339)
T 3j21_k 8 KKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRE 47 (339)
T ss_dssp TTTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhc
Confidence 3467889999999998888877 68999999999998886
No 32
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=20.90 E-value=2.3e+02 Score=20.84 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHcc-eEEEEe-CCCChhHHHHHHHHHHH
Q 041758 81 LEEIVDQVRAAAETWG-FFQVVN-HGIPLNVLEEIIEGIRK 119 (183)
Q Consensus 81 ~~~~~~~l~~A~~~~G-FF~v~n-HGI~~~li~~~~~~~~~ 119 (183)
....+++|.+.++++. .+.|++ +|++...+.+++...++
T Consensus 6 K~~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~ 46 (173)
T 2j01_J 6 NVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQ 46 (173)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4567888888888888 666655 57888888888877764
Done!