BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041759
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Xylose
pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Glucose
pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To
6-Bromo-6-Deoxy-D-Glucose
Length = 491
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 119/297 (40%), Gaps = 35/297 (11%)
Query: 229 RSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLS 288
+ W ++ IP L++ LLY V ESPRWL +G+QE+A +++ + + Q
Sbjct: 195 NTDGWRYMFASECIPALLFLMLLYT-VPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253
Query: 289 LSLVSAVSFGHEPAAXXXXXXXXXXIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGI 348
+ ++ G + + + L++ GI VV Y
Sbjct: 254 QEIKHSLDHGRKTGGRLLMFGVGVIV---------IGVMLSIFQQFVGINVVLYYAPEVF 304
Query: 349 ENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAV 408
+ LG + ++ ++ + NL T+ L + K+ RK L II + + +
Sbjct: 305 KTLGASTDIALLQTIIVGVINLTFTV----LAIMTVDKFGRKP----LQIIGALGMAIGM 356
Query: 409 VANDISNAGKRMRIGLELASLFSAYIAY------TVIFIYAIELFPTCVRNSATSIMRLA 462
+ + + I L+ LF Y+A V ++ E+FP +R A +I A
Sbjct: 357 FSLGTAFYTQAPGIVALLSMLF--YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 414
Query: 463 IIFAAIFSSVLVAAGSNNEFV--------SYGVFGLVIICCGFFV-ICLPETRGSSL 510
A F S N ++ SY ++G + + F+ +PET+G +L
Sbjct: 415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471
>pdb|1ND5|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
Length = 354
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 231 SSWTIIYLWTSIP----TLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKD 283
S W I LW IP L LLY+ PR+ ++ ++ E K L P KD
Sbjct: 98 SIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKD 154
>pdb|2HPA|A Chain A, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|B Chain B, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|C Chain C, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|D Chain D, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|1CVI|A Chain A, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|B Chain B, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|C Chain C, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|D Chain D, Crystal Structure Of Human Prostatic Acid Phosphatase
Length = 342
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 231 SSWTIIYLWTSIP----TLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKD 283
S W I LW IP L LLY+ PR+ ++ ++ E K L P KD
Sbjct: 98 SIWNPILLWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKD 154
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 17/112 (15%)
Query: 214 FTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAV- 272
F+ G +AY + + L + P + Y G + SP WL +QG Q+E V
Sbjct: 112 FSFGAYISAKVAYDQK-----VAQLISVAPPVFYEGFASLTQMASP-WLIVQGDQDEVVP 165
Query: 273 -EVIKSLSPIKDSNQLSLSLVSAVSFGHEPAAXXXXXXXXXXIRELFVRRWA 323
E +K+ NQ+S S V F A +REL VR A
Sbjct: 166 FEQVKAF-----VNQIS----SPVEFVVMSGASHFFHGRLIELRELLVRNLA 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,521,533
Number of Sequences: 62578
Number of extensions: 495096
Number of successful extensions: 1116
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1112
Number of HSP's gapped (non-prelim): 6
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)