Query 041759
Match_columns 525
No_of_seqs 437 out of 2666
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 17:42:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5E-43 1.7E-47 355.9 30.0 428 38-519 10-480 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2.1E-38 7.1E-43 318.3 25.9 393 41-503 29-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.7E-35 5.9E-40 295.9 28.9 365 41-497 27-427 (438)
4 2gfp_A EMRD, multidrug resista 100.0 2.1E-33 7E-38 274.8 11.0 342 42-476 2-348 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 1.1E-30 3.7E-35 265.1 19.8 381 104-502 46-471 (491)
6 2cfq_A Lactose permease; trans 99.9 1.4E-27 4.9E-32 236.4 14.5 362 100-509 30-407 (417)
7 2xut_A Proton/peptide symporte 99.9 1.3E-26 4.4E-31 237.0 20.0 147 101-251 37-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.3E-12 4.5E-17 130.3 14.3 148 100-251 275-430 (451)
9 3o7q_A L-fucose-proton symport 99.3 2.7E-11 9.1E-16 120.3 17.4 133 338-476 43-175 (438)
10 2cfq_A Lactose permease; trans 99.3 8.5E-12 2.9E-16 123.0 10.4 146 113-259 257-404 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.3 7.8E-11 2.7E-15 118.8 16.1 141 351-500 49-194 (491)
12 2gfp_A EMRD, multidrug resista 99.2 6.1E-11 2.1E-15 115.1 14.4 165 334-507 13-180 (375)
13 2xut_A Proton/peptide symporte 99.1 6.5E-10 2.2E-14 113.1 15.9 167 327-501 18-197 (524)
14 4gc0_A D-xylose-proton symport 99.0 1.2E-09 4.1E-14 110.1 12.4 155 100-259 300-467 (491)
15 2g9p_A Antimicrobial peptide l 43.6 5.3 0.00018 19.6 0.1 14 134-148 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5e-43 Score=355.91 Aligned_cols=428 Identities=18% Similarity=0.246 Sum_probs=311.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeecccccc-----c
Q 041759 38 IVEQAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLEC-----S 112 (525)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~-----~ 112 (525)
...+.++.+++.++.++|...++.+ +|.++++++... .
T Consensus 10 ~~~i~~~a~lg~~~~Gyd~~~i~~~-------------------------------------~~~~~~~~~~~~~~~~~~ 52 (491)
T 4gc0_A 10 IFSITLVATLGGLLFGYDTAVISGT-------------------------------------VESLNTVFVAPQNLSESA 52 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGT-------------------------------------HHHHHHHHTGGGCCCHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhcCCCCCCccc
Confidence 3346677889999999999998888 888888775422 1
Q ss_pred hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHH
Q 041759 113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTI------------------FSNNLWIYSL 174 (525)
Q Consensus 113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~~ 174 (525)
++.+.|++.+++.+|.++|++++|+++|| +|||++++++.+++.+++++++ +++|++++++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 45678999999999999999999999999 9999999999999999999998 4789999999
Q ss_pred HHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc---------cCCchHHHHHHHHHHHH
Q 041759 175 LRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN---------RSSSWTIIYLWTSIPTL 245 (525)
Q Consensus 175 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~---------~~~~wr~~f~~~~~~~~ 245 (525)
+|+++|++.|...+..+++++|+.|+++|++..++.+.+..+|.++++.+++.. ....||+.+.+..++.+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999886543 23568999988888888
Q ss_pred HHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHH
Q 041759 246 VYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALE 325 (525)
Q Consensus 246 ~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 325 (525)
+.. +..+++||||+|+..+++.+++++.+++... .+ ...++..+..+...+.+ + .......++.+....
T Consensus 212 ~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~-~~--~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~ 280 (491)
T 4gc0_A 212 LFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMG-NT--LATQAVQEIKHSLDHGR---K----TGGRLLMFGVGVIVI 280 (491)
T ss_dssp HHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHH---H----HTTHHHHSCCTHHHH
T ss_pred hhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhcC-Cc--hhHHHHHHHHHHHHhhh---h----hhhHHHHhcccHHHH
Confidence 877 7788999999999999999999888877622 11 11111111100000000 0 012222333443333
Q ss_pred HHHHHHHHH-HHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHH
Q 041759 326 RTLALMVPG-FGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICS 404 (525)
Q Consensus 326 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~ 404 (525)
......+.. .+.....++.+.+.+..+.+............+ ..+++.++++++.||+|||+.++.+.....+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGV----INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHH----HHHHHHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence 333222222 234445555566666666665554444444444 455899999999999999999999988888887
Q ss_pred HHHHHhccccccchhHHHHHHHHHHHHHH-HHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhc------
Q 041759 405 IMAVVANDISNAGKRMRIGLELASLFSAY-IAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAG------ 477 (525)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~------ 477 (525)
+.+..........+ ...+..++...+.. ...++.+.+.+|++|++.|+++.|+.+..++++++++|.+....
T Consensus 357 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~ 435 (491)
T 4gc0_A 357 FSLGTAFYTQAPGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL 435 (491)
T ss_dssp HHHHHHHHTTCCHH-HHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred HHHHHHHhcccchH-HHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665433311222 22333333333323 33467889999999999999999999999999998887766421
Q ss_pred --cCchhHHHHHHHHHHHHHHHH-HHhccCCCCCCccchHHHhcc
Q 041759 478 --SNNEFVSYGVFGLVIICCGFF-VICLPETRGSSLCDTIDQREH 519 (525)
Q Consensus 478 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 519 (525)
..+....+++++++++++.++ ++++||||+|+++|+++..|+
T Consensus 436 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 436 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence 123445677778777776654 577899999999987765443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.1e-38 Score=318.29 Aligned_cols=393 Identities=11% Similarity=0.001 Sum_probs=305.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759 41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP 120 (525)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~ 120 (525)
.+..++++.+...++....... .|.+.+++ + +..+.|++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~-~---s~~~~g~~ 67 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALA-------------------------------------MPYLVEQG-F---SRGDLGFA 67 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHH-------------------------------------HHHTTSST-T---CSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHh-c---cHhHHHHH
Confidence 6777778888888888888888 89999999 8 99999999
Q ss_pred HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhhcccchhhhhheeeEe
Q 041759 121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIF----SNNLWIYSLLRFFSGISRATIGTCTIVLLTE 196 (525)
Q Consensus 121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 196 (525)
.+++.++..++++++|+++|| +|||++++++.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|
T Consensus 68 ~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~ 146 (451)
T 1pw4_A 68 LSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 146 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence 999999999999999999999 99999999999999999999999 9999999999999999999999999999999
Q ss_pred eecCcchhhHHhHHHHHHHHHHHHHHHHH-HhccCCc-hHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHH
Q 041759 197 KVGTEWRGLVGILDSFFFTIGTLTLPAIA-YTNRSSS-WTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEV 274 (525)
Q Consensus 197 ~~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~ 274 (525)
++|+++|++++++.+.+..+|.+++|.++ .+....+ ||+.|++.+++.++..++.++++||+|+....+++.+
T Consensus 147 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 221 (451)
T 1pw4_A 147 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE----- 221 (451)
T ss_dssp TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT-----
T ss_pred HCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh-----
Confidence 99999999999999999999999999995 5566677 9999999999888877667778899875321111000
Q ss_pred HHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCC
Q 041759 275 IKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIEN-LGF 353 (525)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 353 (525)
. +++.+.+ . +.++.++... .....++++++|.++...+..++............+.++++ +|.
T Consensus 222 -------~-~~~~~~~---~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 285 (451)
T 1pw4_A 222 -------Y-KNDYPDD---Y--NEKAEQELTA---KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF 285 (451)
T ss_dssp -------T-CCC------------------CC---THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC
T ss_pred -------h-ccccccc---c--hhhhhccccc---ccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 0000000 0 0000000000 00125678888887777777666666665555566666666 899
Q ss_pred hhHHHHHHHHHhcccccccCchhHHHHHHHHHhh--cChhHHHHHHHHHH-HHHHHHHHhccccccchhHHHHHHHHHHH
Q 041759 354 DIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW--NRKSSLLVLFIISG-ICSIMAVVANDISNAGKRMRIGLELASLF 430 (525)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (525)
+....+...+...+ +.+++.++.+++.||+ +||+.+.++..+.. ++.+++...... +.....+..++.++
T Consensus 286 ~~~~~~~~~~~~~~----~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~ 358 (451)
T 1pw4_A 286 ALDKSSWAYFLYEY----AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG---NPTVDMICMIVIGF 358 (451)
T ss_dssp CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTT---CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhccc---CHHHHHHHHHHHHH
Confidence 98888888877777 7779999999999999 99998888777666 554444433221 23455566667777
Q ss_pred HHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHH-HHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHHhcc
Q 041759 431 SAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIF-AAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVICLP 503 (525)
Q Consensus 431 ~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (525)
+.+...+....+..|.+|++.|+++.|+.+....+ |..++|.+.|. +..++...+.+.+++.+++.++.++.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788889999999999999999999999999 99999999984 344677778888777777766655543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.7e-35 Score=295.85 Aligned_cols=365 Identities=12% Similarity=0.039 Sum_probs=284.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhH
Q 041759 41 QAILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLP 120 (525)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~ 120 (525)
.+.++++..+..+++....... .|.+++++|+ +..+.|++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~g~---s~~~~g~~ 66 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDIL-------------------------------------LPQFQQAFTL---TNFQAGLI 66 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHSCC---CSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH-------------------------------------HHHHHHHcCC---CHHHHHHH
Confidence 5667777788888888888888 8999999999 99999999
Q ss_pred HHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHhhcccchhhhhheeeEee
Q 041759 121 AASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLT---IFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEK 197 (525)
Q Consensus 121 ~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 197 (525)
.+++.++..++++++|+++|| +|||++++++.++.+++.++. +++++++.++++|++.|++.+...+...+++.|+
T Consensus 67 ~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 145 (438)
T 3o7q_A 67 QSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL 145 (438)
T ss_dssp HHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH
Confidence 999999999999999999999 999999999999999999999 8889999999999999999999999999999999
Q ss_pred ecCcchhhHHhHHHHHHHHHHHHHHHHH-Hhc-cCCc-------------------------hHHHHHHHHHHHHHHHhH
Q 041759 198 VGTEWRGLVGILDSFFFTIGTLTLPAIA-YTN-RSSS-------------------------WTIIYLWTSIPTLVYSGL 250 (525)
Q Consensus 198 ~~~~~r~~~~~~~~~~~~~G~~l~~~l~-~~~-~~~~-------------------------wr~~f~~~~~~~~~~~~~ 250 (525)
+|+++|++++++.+.+.++|.+++|.++ .+. ...+ ||+.|++.+++.++..++
T Consensus 146 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 225 (438)
T 3o7q_A 146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL 225 (438)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999994 444 3333 999998887777666533
Q ss_pred hh-eeecCCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHH
Q 041759 251 LY-IFVSESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLA 329 (525)
Q Consensus 251 ~~-~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 329 (525)
.+ ...||+++. + +++ + ++.+...++++++++|.++...+.
T Consensus 226 ~~~~~~p~~~~~-----~--------------~~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~~~ 266 (438)
T 3o7q_A 226 IMLTKFPALQSD-----N--------------HSD---------------A-----KQGSFSASLSRLARIRHWRWAVLA 266 (438)
T ss_dssp HHHCCCCCCTTT-----C--------------CCC---------------S-----STTSHHHHHHHHTTCSHHHHHHHH
T ss_pred HHHHcCCccccc-----c--------------ccc---------------c-----cccchhhhHHHHHhChHHHHHHHH
Confidence 32 223443210 0 000 0 000011467888999987777766
Q ss_pred HHHHHHHHHHHHhhhhhc-ccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHH
Q 041759 330 LMVPGFGIGVVYYGMTLG-IEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMA 407 (525)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~ 407 (525)
.++............+.+ .++ +|.+....+...+...+ +.+++.++.+++.||++||+.+.++.++..++.+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~ 342 (438)
T 3o7q_A 267 QFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV----CFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS 342 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH----HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 666555554444444555 555 58888888888877777 777999999999999999999999998888887776
Q ss_pred HHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh--ccCc-hhHH
Q 041759 408 VVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA--GSNN-EFVS 484 (525)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~-~~~~ 484 (525)
.+.+.. ......++.+++.+..++..+++..|.+|++ ++.+.++.. ...+|+.++|.+.|. +..+ ....
T Consensus 343 ~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~ 414 (438)
T 3o7q_A 343 AFAGGH------VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_dssp HHCCHH------HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred HHcCCc------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 665433 2344456677888888899999999999976 788888777 667999999999984 2223 5555
Q ss_pred HHHHHHHHHHHHH
Q 041759 485 YGVFGLVIICCGF 497 (525)
Q Consensus 485 ~~~~~~~~~~~~~ 497 (525)
+.+.+++.++..+
T Consensus 415 ~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 415 ELIPALCFAVIFI 427 (438)
T ss_dssp GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6655444444333
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=2.1e-33 Score=274.80 Aligned_cols=342 Identities=12% Similarity=0.056 Sum_probs=269.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCccccccCCCCCCCCCCCCCCCCCCceecCCCCccccceeeccccccchhhhhhhHH
Q 041759 42 AILVSLASLFDSQQSFISVYTEAEPTWHCLNNTTCSSASNICMFPKSSWAWDGNPTTTALTIISEWGLECSSAFIKGLPA 121 (525)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~p~~~~~~i~~~~~~~~~s~~~~g~~~ 121 (525)
+.++++..+...++....... +|.+.+++|. +..+.|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~g~---s~~~~g~~~ 41 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPA-------------------------------------IADMARDLNV---REGAVQSVM 41 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHTTSSS---TTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhh-------------------------------------hHHHHHHcCC---CHHHHHHHH
Confidence 356677778888888877777 8999999999 999999999
Q ss_pred HHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhheeeEeeecCc
Q 041759 122 ASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTE 201 (525)
Q Consensus 122 s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 201 (525)
+.+.++..+++++.|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.|++.+...+...+++.|++|++
T Consensus 42 ~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 120 (375)
T 2gfp_A 42 GAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT 120 (375)
T ss_dssp HHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHhHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHHHHHHHHhHhheeecCCchHhhhcCCHHHHHHHHHhhCC
Q 041759 202 WRGLVGILDSFFFTIGTLTLPAIAYT-NRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWLFMQGRQEEAVEVIKSLSP 280 (525)
Q Consensus 202 ~r~~~~~~~~~~~~~G~~l~~~l~~~-~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~ 280 (525)
+|++++++.+.+..+|.+++|.++.. .+..+||+.|++.++..++..++..+++||+++..
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 182 (375)
T 2gfp_A 121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD------------------ 182 (375)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC------------------
Confidence 99999999999999999999999554 44569999999999988888755677788865310
Q ss_pred CcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCChhHHHH
Q 041759 281 IKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIEN-LGFDIYLGV 359 (525)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 359 (525)
+++ + +. ..++++++++|.++...+..++............|.+.++ .|.+....+
T Consensus 183 -~~~--------------~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g 238 (375)
T 2gfp_A 183 -APR--------------T----RL-----LTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVS 238 (375)
T ss_dssp -CCC--------------C----CT-----TTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred -ccc--------------c----cH-----HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 000 0 00 0355677888887776666666666665555666777666 788877777
Q ss_pred HHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHH-HHHHHH--HHHHhccccccchhHHHHHHHHHHHHHHHHH
Q 041759 360 VFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFII-SGICSI--MAVVANDISNAGKRMRIGLELASLFSAYIAY 436 (525)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (525)
.......+ +.+++.++.+++.||.+++ ...+... ...+.. ........ +.....+..++.+++.+...
T Consensus 239 ~~~~~~~~----~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~ 309 (375)
T 2gfp_A 239 ILFILPIP----AAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVM---NVWTLLVPAALFFFGAGMLF 309 (375)
T ss_dssp HHHHTHHH----HHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHH---HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccc---cHHHHHHHHHHHHHHHHHhh
Confidence 77776666 7778888888888888762 2233222 222222 11111111 23345566677778888888
Q ss_pred HHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759 437 TVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA 476 (525)
Q Consensus 437 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~ 476 (525)
+....+..|..| ++|+++.|+.+....+|..++|.+.+.
T Consensus 310 ~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 310 PLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp STTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred HHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998 789999999999999999999988875
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=1.1e-30 Score=265.08 Aligned_cols=381 Identities=11% Similarity=0.049 Sum_probs=245.2
Q ss_pred eeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC-CchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 041759 104 ISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL-GRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGIS 182 (525)
Q Consensus 104 ~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~-Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 182 (525)
++|+|+ +..+.|++.+++.++..++++++|+++|| + |||+++.++.++.+++.+++++++|++.++++|+++|++
T Consensus 46 ~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 121 (491)
T 4aps_A 46 TGDLHI---TRATAASIMAIYASMVYLSGTIGGFVADR-IIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIG 121 (491)
T ss_dssp HTSCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHH
T ss_pred hhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344999 99999999999999999999999999998 7 999999999999999999999999999999999999999
Q ss_pred ccchhhhhheeeEeeecCcc--hhhHHhHHHHHHHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHHHhHhheeecCCc
Q 041759 183 RATIGTCTIVLLTEKVGTEW--RGLVGILDSFFFTIGTLTLPAIA-YTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESP 259 (525)
Q Consensus 183 ~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~l~~~l~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp 259 (525)
.+...+...+++.|++|+++ |+.++++++.+.++|.+++|.++ .+.+..+||+.|++.++..++..++..+..|+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4aps_A 122 TGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTL 201 (491)
T ss_dssp HHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 99999999999999999988 77788889999999999999984 5555689999999988777766633333323211
Q ss_pred h----HhhhcCCHHHHHHHHHhh--------------CCCcCCccchhhhhh--h----------ccCCCCccccccccc
Q 041759 260 R----WLFMQGRQEEAVEVIKSL--------------SPIKDSNQLSLSLVS--A----------VSFGHEPAASSKESS 309 (525)
Q Consensus 260 ~----~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~ 309 (525)
+ ....+.+.++.++..+.. .. .+..+..+.... . ....++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 273 (491)
T 4aps_A 202 DPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNL-VGWNSLPAYINLLTIVAIAIPVFYFAWMISSVK------- 273 (491)
T ss_dssp CSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHH-HSSCCTTHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHh-ccCcccccchhhhhHHHHHHHHHHHHHHhhccc-------
Confidence 0 000111222222211110 00 000000000000 0 00000000
Q ss_pred chhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhc
Q 041759 310 FLSSIRELFVRRWALERTLALMVPGFGIGVVYYGMTLGIEN-LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWN 388 (525)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 388 (525)
....+..+........+.....+.........++.+.++ .+.+....+.......+ +.+++.++.+++.||++
T Consensus 274 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~r~~ 347 (491)
T 4aps_A 274 --VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPL----FIMLYTPFFAWLWTAWK 347 (491)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHH----HHHHHHHHHHHHHHHTT
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchH----HHHHHHHHHHHHHHHHh
Confidence 000000011111222222222222222222233333332 33332222222222222 44478888999999999
Q ss_pred ChhHHH-----HHHHHHHHHHHHHHHhcc----ccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHH
Q 041759 389 RKSSLL-----VLFIISGICSIMAVVAND----ISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIM 459 (525)
Q Consensus 389 ~~~~~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~ 459 (525)
||+... .+..+.+++.+++..... ....++....+..++.+++.+...+....++.|.+|++.|+++.|+.
T Consensus 348 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 427 (491)
T 4aps_A 348 KNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMW 427 (491)
T ss_dssp TC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Confidence 886544 666666666655554320 00113445666777778888887888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh-ccCchhHHHHHHHHHHHHHHHHHHhc
Q 041759 460 RLAIIFAAIFSSVLVAA-GSNNEFVSYGVFGLVIICCGFFVICL 502 (525)
Q Consensus 460 ~~~~~~g~~~~p~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (525)
+....+|..++|.+.+. .+.+....+.+++++.+++.++.++.
T Consensus 428 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 428 FLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999985 33456677777777777666655444
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=1.4e-27 Score=236.41 Aligned_cols=362 Identities=16% Similarity=0.073 Sum_probs=227.0
Q ss_pred ccc-eeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHH---HHHhhhhHH-HHHH
Q 041759 100 ALT-IISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATS---LTIFSNNLW-IYSL 174 (525)
Q Consensus 100 ~~~-i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~---~~~~~~~~~-~l~~ 174 (525)
+|. +++++|+ +..+.|++.+.+.++..++++++|+++|| +|||++++++..+++++.. ...+++... .++.
T Consensus 30 ~~~~l~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (417)
T 2cfq_A 30 FPIWLHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105 (417)
T ss_dssp HHHHHHTTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCH
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5667999 99999999999999999999999999999 9999999998887765322 122332221 2455
Q ss_pred HHHHHhhcccchhhhhheeeEeeecC--cchhhHHhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhHhh
Q 041759 175 LRFFSGISRATIGTCTIVLLTEKVGT--EWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLY 252 (525)
Q Consensus 175 ~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~l~~~l~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 252 (525)
.+++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.++..+.+.+||+.|++.++..++.. +..
T Consensus 106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~-~~~ 184 (417)
T 2cfq_A 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA-VLL 184 (417)
T ss_dssp HHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHH-HHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH-HHH
Confidence 67777776665555444444444443 345666777777778888899888554444689999998877765554 344
Q ss_pred eeec-CCchHhhhcCCHHHHHHHHHhhCCCcCCccchhhhhhhccCCCCcccccccccchhhhhhhhcchhHHHHHHHHH
Q 041759 253 IFVS-ESPRWLFMQGRQEEAVEVIKSLSPIKDSNQLSLSLVSAVSFGHEPAASSKESSFLSSIRELFVRRWALERTLALM 331 (525)
Q Consensus 253 ~~lp-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 331 (525)
++.+ |+++ +.+ . .++. + ++.+ +.....+++++++|.++...+..+
T Consensus 185 ~~~~~~~~~----~~~------------~-~~~~-----------~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 230 (417)
T 2cfq_A 185 FFAKTDAPS----SAT------------V-ANAV-----------G-ANHS-----AFSLKLALELFRQPKLWFLSLYVI 230 (417)
T ss_dssp CSSCCCCSC----SSC------------S-SSSS-----------S-SCCC-----CCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCccccc----ccc------------c-cccc-----------c-cccc-----cccHHHHHHHhcCCchhhHHHHHH
Confidence 4444 3321 000 0 0000 0 0000 000135567888888665554433
Q ss_pred HHHHHHHHHHhhhhhcccc-cC---ChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHH
Q 041759 332 VPGFGIGVVYYGMTLGIEN-LG---FDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMA 407 (525)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~ 407 (525)
.............|.++.+ ++ .+....+...++..+ +.+++.++.+++.||+|||+.+..+..+.++..+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL----LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHH----HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 3322222211123333222 22 222333344444333 555889999999999999999988887777765555
Q ss_pred HHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHH-HHHHHHHHHHHHHHHhh--ccCchhHH
Q 041759 408 VVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIM-RLAIIFAAIFSSVLVAA--GSNNEFVS 484 (525)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~-~~~~~~g~~~~p~i~~~--~~~~~~~~ 484 (525)
....+ ....++..++.+++.+...+..+.+..|.+|++.|+++.++. +....+|+.++|.+.|. +..++...
T Consensus 307 ~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~ 381 (417)
T 2cfq_A 307 SFATS-----ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381 (417)
T ss_dssp TTCCS-----HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHH
T ss_pred HHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHH
Confidence 43322 223444444555555555666788999999999999999984 77788999999999985 22345666
Q ss_pred HHHHHHHHHHHHHHHHh-ccCCCCCC
Q 041759 485 YGVFGLVIICCGFFVIC-LPETRGSS 509 (525)
Q Consensus 485 ~~~~~~~~~~~~~~~~~-~~~~~~~~ 509 (525)
|.+.+++.+++.++.+. .+|+++.+
T Consensus 382 f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 382 YLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 77777777776665443 45544433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.94 E-value=1.3e-26 Score=237.03 Aligned_cols=147 Identities=10% Similarity=0.081 Sum_probs=132.2
Q ss_pred cceeeccc------cccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC-CchHHHHHHHHHHHHHHHHHHhhh-hHHHH
Q 041759 101 LTIISEWG------LECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL-GRKNLLFLSCLTMSVATSLTIFSN-NLWIY 172 (525)
Q Consensus 101 ~~i~~~~~------~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~-Grk~~~~~~~~~~~i~~~~~~~~~-~~~~l 172 (525)
+.+.+++| + +..+.|++.+++.++..++++++|+++|| + |||+++.++.++.+++.++.++++ +++.+
T Consensus 37 ~~l~~~~~~~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (524)
T 2xut_A 37 PFLMTALLLSIPEEL---RGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAFLAIFEHSVQGF 112 (524)
T ss_dssp HHHHHSCSSCCSSST---TTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHhcccccccc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 34566777 8 99999999999999999999999999999 9 999999999999999999999999 99999
Q ss_pred HHHHHHHhhcccchhhhhheeeEeeecCcchhhHHhH---HHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHH
Q 041759 173 SLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGIL---DSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYS 248 (525)
Q Consensus 173 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~ 248 (525)
++.|++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+ +.+....+||+.|++.+++.++..
T Consensus 113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 192 (524)
T 2xut_A 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVAT 192 (524)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876666 899999999999998 555566899999999888877666
Q ss_pred hHh
Q 041759 249 GLL 251 (525)
Q Consensus 249 ~~~ 251 (525)
++.
T Consensus 193 ~~~ 195 (524)
T 2xut_A 193 VFF 195 (524)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=1.3e-12 Score=130.26 Aligned_cols=148 Identities=14% Similarity=0.060 Sum_probs=127.7
Q ss_pred ccceeec-cccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccC--CchHHHHHHHHHHH-HHHHHHHhh--hhHHHHH
Q 041759 100 ALTIISE-WGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSL--GRKNLLFLSCLTMS-VATSLTIFS--NNLWIYS 173 (525)
Q Consensus 100 ~~~i~~~-~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~--Grk~~~~~~~~~~~-i~~~~~~~~--~~~~~l~ 173 (525)
.|.+.++ +|. +..+.+++.+...++..++.++.|++.|| + |||+.+.++.++.. ++.++..+. .+.+.+.
T Consensus 275 ~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T 1pw4_A 275 SPTYLKEVKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350 (451)
T ss_dssp HHHHBTTBSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 3444444 899 99999999999999999999999999999 9 99999888887776 666666665 4788888
Q ss_pred HHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHH-HHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHh
Q 041759 174 LLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTI-GTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLL 251 (525)
Q Consensus 174 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~ 251 (525)
+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+ +.+.+..||+..|++.+++.++..++.
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 8899999999988888889999999999999999999999999 99999988 666777899999999888887776333
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.33 E-value=2.7e-11 Score=120.27 Aligned_cols=133 Identities=9% Similarity=-0.013 Sum_probs=112.6
Q ss_pred HHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccccccc
Q 041759 338 GVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDISNAG 417 (525)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (525)
.......|.+.+++|.+..+.+.+.+...+ +.+++.++.|++.||+|||+.+.++.++.+++.++....... .+
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~----~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~ 116 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYF----GYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MN 116 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHH----HHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc--cc
Confidence 344455677788899999999988888888 778999999999999999999999999999988887332111 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 041759 418 KRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAA 476 (525)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~ 476 (525)
....++..++.+++.+...+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.
T Consensus 117 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999999999999999999999874
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.28 E-value=8.5e-12 Score=123.03 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=122.8
Q ss_pred hhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcccchhhhhhe
Q 041759 113 SAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIV 192 (525)
Q Consensus 113 s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 192 (525)
+....++..++..++..++.++.|+++|| +|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888999999999999999 99999999999888888888888888888888888888887777777788
Q ss_pred eeEeeecCcchhhHHhH-HHHHHHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhHhheeecCCc
Q 041759 193 LLTEKVGTEWRGLVGIL-DSFFFTIGTLTLPAI-AYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESP 259 (525)
Q Consensus 193 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~l~~~l-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~lpesp 259 (525)
++.|.+|++.|++..++ ++....+|.+++|.+ +.+.+..|++..|.+.+++.++..++.+++.||.+
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999888 478888999999988 55556678999999988888877755566667654
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.26 E-value=7.8e-11 Score=118.83 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=116.9
Q ss_pred cCChhHHHHHHHHHhcccccccCchhHHHHHHHHHh-hcChhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 041759 351 LGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQK-WNRKSSLLVLFIISGICSIMAVVANDISNAGKRMRIGLELASL 429 (525)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (525)
+|.+....+.+.+...+ +..++.++.|+++|| +|||+++..+.++..++.++.....+. ...++..++.+
T Consensus 49 ~~~s~~~~~~~~~~~~~----~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~g 119 (491)
T 4aps_A 49 LHITRATAASIMAIYAS----MVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGA-----SALFGSIILII 119 (491)
T ss_dssp CCSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCST-----THHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHH
Confidence 89999998888888888 888999999999999 899999999999999888887765443 46677788888
Q ss_pred HHHHHHHHHHHhhhccccCcch--hhhhhHHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHHHHHHHHH
Q 041759 430 FSAYIAYTVIFIYAIELFPTCV--RNSATSIMRLAIIFAAIFSSVLVAA--GSNNEFVSYGVFGLVIICCGFFVI 500 (525)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~g~~~~p~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 500 (525)
++.+...+...+++.|.+|++. |+.+.++.+....+|..++|.+.+. ...++...|.+.++..+++.++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 120 IGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 7778888889999999999999985 334677777777666665555443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.25 E-value=6.1e-11 Score=115.09 Aligned_cols=165 Identities=12% Similarity=0.091 Sum_probs=130.8
Q ss_pred HHHHHHHHhhhhhcccccCChhHHHHHHHHHhcccccccCchhHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhccc
Q 041759 334 GFGIGVVYYGMTLGIENLGFDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKWNRKSSLLVLFIISGICSIMAVVANDI 413 (525)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (525)
...........+.+.+++|.+..+.+...+...+ +..++.++.|++.||+|||+.+..+..+..++.++....++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~----~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 88 (375)
T 2gfp_A 13 QMAQTIYIPAIADMARDLNVREGAVQSVMGAYLL----TYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL 88 (375)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHH----HHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH
Confidence 3334444455677788899999988888888887 777999999999999999999999999999998888776543
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHHHHHHHHHhhccC--chhHHHHHHHHH
Q 041759 414 SNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSIMRLAIIFAAIFSSVLVAAGSN--NEFVSYGVFGLV 491 (525)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~p~i~~~~~~--~~~~~~~~~~~~ 491 (525)
...++..++.+++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.... ++...+.+.+++
T Consensus 89 -----~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 89 -----TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 4667778888899898999999999999999999999999999999999999999986433 455666666666
Q ss_pred HHHHHH-HHHhccCCCC
Q 041759 492 IICCGF-FVICLPETRG 507 (525)
Q Consensus 492 ~~~~~~-~~~~~~~~~~ 507 (525)
.++..+ ..+.+||+++
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHCcccCC
Confidence 555544 3344565543
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.13 E-value=6.5e-10 Score=113.05 Aligned_cols=167 Identities=10% Similarity=0.064 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHhhh-hhcccccC------ChhHHHHHHHHHhcccccccCchhHHHHHHHHHhh-cChhHHHHHHH
Q 041759 327 TLALMVPGFGIGVVYYGM-TLGIENLG------FDIYLGVVFNALLEIPNLASTIPSFFLTFFLIQKW-NRKSSLLVLFI 398 (525)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-g~~~~~~~~~~ 398 (525)
.+..++..+........+ +++.+++| .+....+.+.+...+ +.+++.++.|+++||+ |||+.+.++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~----~~~~~~~~~G~l~dr~~g~r~~~~~~~~ 93 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI----GVYFFPLLGGWIADRFFGKYNTILWLSL 93 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHH----HHHHTHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 333333333333333333 34445677 888888888887777 7778999999999999 99999999999
Q ss_pred HHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhhhhHH---HHHHHHHHHHHHHHHHh
Q 041759 399 ISGICSIMAVVANDISNAGKRMRIGLELASLFSAYIAYTVIFIYAIELFPTCVRNSATSI---MRLAIIFAAIFSSVLVA 475 (525)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~---~~~~~~~g~~~~p~i~~ 475 (525)
+..++.++..+.... ....++..++.+++.+...+...+++.|.+|++.|++..+. .+....+|..++|.+.+
T Consensus 94 ~~~~~~~~~~~~~~~----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~ 169 (524)
T 2xut_A 94 IYCVGHAFLAIFEHS----VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP 169 (524)
T ss_dssp HHHHHHHHHHHTSSC----HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHhccc----HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888887776512 34566777888888888899999999999999999776666 78888999999999887
Q ss_pred h--ccCchhHHHHHHHHHHHHHHHHHHh
Q 041759 476 A--GSNNEFVSYGVFGLVIICCGFFVIC 501 (525)
Q Consensus 476 ~--~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (525)
. ...++...|.+.+++.+++.+..++
T Consensus 170 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 170 LLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3346677777777766655554443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.03 E-value=1.2e-09 Score=110.09 Aligned_cols=155 Identities=17% Similarity=0.087 Sum_probs=113.8
Q ss_pred ccceeeccccccchhhhhhhHHHHHHHHHHHhHHhhHhcccccCCchHHHHHHHHHHHHHHHHHHhh-----hhHHHHH-
Q 041759 100 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFS-----NNLWIYS- 173 (525)
Q Consensus 100 ~~~i~~~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~G~l~dr~~Grk~~~~~~~~~~~i~~~~~~~~-----~~~~~l~- 173 (525)
.+.+.++.+. +............+...++.++.+++.|| +|||+.++.+....+++.+..+.. ++...++
T Consensus 300 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 375 (491)
T 4gc0_A 300 APEVFKTLGA---STDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 375 (491)
T ss_dssp HHHHHHHSSC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred chHHHHhcCC---CccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 4566666676 66666777777888899999999999999 999999999988888877765543 1222222
Q ss_pred HHHHHHhhcccchhhhhheeeEeeecCcchhhHHhHHHHHHHHHHHHHHHHHHhc-------cCCchHHHHHHHHHHHHH
Q 041759 174 LLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTN-------RSSSWTIIYLWTSIPTLV 246 (525)
Q Consensus 174 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~l~~~l~~~~-------~~~~wr~~f~~~~~~~~~ 246 (525)
+.-+..+++.+ ..+....+.+|.+|.+.|+++.++......+|.++++.+...+ ...++.+.|++.++++++
T Consensus 376 ~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~ 454 (491)
T 4gc0_A 376 MLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 454 (491)
T ss_dssp HHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22223333333 4466778899999999999999999999988888877653222 223566678888888888
Q ss_pred HHhHhheeecCCc
Q 041759 247 YSGLLYIFVSESP 259 (525)
Q Consensus 247 ~~~~~~~~lpesp 259 (525)
..++.++++|||.
T Consensus 455 ~~i~~~~~~PETk 467 (491)
T 4gc0_A 455 AALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHCCCCT
T ss_pred HHHHHHheecCCC
Confidence 8877888999984
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=43.62 E-value=5.3 Score=19.65 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.0
Q ss_pred hhHhcccccCCchHH
Q 041759 134 FLATLADSSLGRKNL 148 (525)
Q Consensus 134 ~~G~l~dr~~Grk~~ 148 (525)
++|.+..+ ||||.+
T Consensus 2 lfgklikk-fgrkai 15 (26)
T 2g9p_A 2 LFGKLIKK-FGRKAI 15 (26)
T ss_dssp HHHHHHHH-HTSHHH
T ss_pred cHHHHHHH-HhHHHH
Confidence 35788888 999864
Done!