BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041762
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 156/296 (52%), Gaps = 38/296 (12%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLV 81
RRVVVTGLGA+TP+G F+ L G SG+ I FD S LP RIA E+ + +
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVD-VDPGAYL 60
Query: 82 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRA------ 135
K +R D ++ YALIA + AL DAG+ + +L+ R G L+GT +G M
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 136 --LKDGIDAIKISYKKM-------------------------TCATGNCCILTAANHIIE 168
L+ G + I + M CATG + +A I
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 169 GDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEGAGVML 228
G+AD++L GG++ I P I F LS RN +P KASRP+ DGFVMGEGAGV++
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 229 LEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKALTNSGVSGE 283
LE +HAK+R A IYAE G G S A+HI+EP GA M +AL ++G++ E
Sbjct: 238 LEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPE 293
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 184 bits (467), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 158/298 (53%), Gaps = 37/298 (12%)
Query: 21 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGL 80
K+RVVVTGLGA+TP+G+ ++ L+EG +GI I FD S+ R GE+K
Sbjct: 6 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQF 65
Query: 81 VPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKD-- 138
+ K AKR D + +A+ A ++A+ DA + V ELN + GVLIGT +G ++ L+D
Sbjct: 66 LDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLEDQQ 122
Query: 139 -------------------------GIDAIKISYKK------MTCATGNCCILTAANHII 167
G+ AI + K CA G+ I A +
Sbjct: 123 TILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQ 182
Query: 168 EGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEGAGVM 227
G A M+CGG++ I P AGF + LS RN DP ASRP+D D DGFVMGEG+G++
Sbjct: 183 NGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGIL 242
Query: 228 LLEELDHAKRRRANIYAEFKGGSSTY-AYHISEPRLNALGAMACMEKALTNSGVSGEI 284
+LEEL+ A R A IY E G + T AYHI+ P + GA + AL +SG+ E+
Sbjct: 243 ILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEM 300
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 152/295 (51%), Gaps = 38/295 (12%)
Query: 21 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGL 80
KRRVVVTG+GAVTP+G+DA + +GV+G+++ + + P +IA E+K +
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKXTRLNPDDFPVKIAAELKDFDVEKY 62
Query: 81 VPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALK--- 137
+ K A++ D + YA+ + + A+ D+G+ V + N NR GV IG+ +G +
Sbjct: 63 LEKKEARKXDRFTHYAIASAEXAVQDSGL---VIDDSNANRVGVWIGSGIGGXETFETQY 119
Query: 138 ------------------------DGIDAIKISYKKMTCATGNC------CILTAANHII 167
G +I+ K + T I A I
Sbjct: 120 EIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIE 179
Query: 168 EGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEGAGVM 227
GDAD + GG++ I +AGF A LS N DP A RP+D D DGF++GEGAG++
Sbjct: 180 RGDADAXITGGAEAPITKXSLAGFTANKALS-LNPDPETACRPFDKDRDGFIIGEGAGIV 238
Query: 228 LLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKALTNSGVS 281
+LEE +HAK R A IYAE G G++ AYHI+ P N GA + A+ ++G++
Sbjct: 239 ILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDDAGLT 293
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 150/272 (55%), Gaps = 33/272 (12%)
Query: 21 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGL 80
KRRVVVTGLG ++P+G+ + LL G SGIS I+ FD S T+ AG +K + + +
Sbjct: 2 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 61
Query: 81 VPPKHAKRADNYLIYALIAGKKALADAG--ITEQ--------------VSGELNKNRCGV 124
+ K ++ D ++ Y ++AG +A+ D+G ITE+ G + +N +
Sbjct: 62 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSL 121
Query: 125 LIG-----------TAMGSMRA----LKDGIDAIKISYKKMTCATGNCCILTAANHIIEG 169
+ G + + +M A + G+ IS C +G I AA I G
Sbjct: 122 MNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIAT-ACTSGVHNIGHAARIIAYG 180
Query: 170 DADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEGAGVMLL 229
DAD+M+ GG++ P + GF A LS RN +P ASRPWD + DGFV+G+GAG+++L
Sbjct: 181 DADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVL 240
Query: 230 EELDHAKRRRANIYAEFKG-GSSTYAYHISEP 260
EE +HAK+R A IYAE G G S+ AYH++ P
Sbjct: 241 EEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 272
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 150/272 (55%), Gaps = 33/272 (12%)
Query: 21 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGL 80
KRRVVVTGLG ++P+G+ + LL G SGIS I+ FD S T+ AG +K + + +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 81 VPPKHAKRADNYLIYALIAGKKALADAG--ITEQ--------------VSGELNKNRCGV 124
+ K ++ D ++ Y ++AG +A+ D+G ITE+ G + +N +
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSL 136
Query: 125 LIG-----------TAMGSMRA----LKDGIDAIKISYKKMTCATGNCCILTAANHIIEG 169
+ G + + +M A + G+ IS C +G I AA I G
Sbjct: 137 MNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIAT-ACTSGVHNIGHAARIIAYG 195
Query: 170 DADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEGAGVMLL 229
DAD+M+ GG++ P + GF A LS RN +P ASRPWD + DGFV+G+GAG+++L
Sbjct: 196 DADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVL 255
Query: 230 EELDHAKRRRANIYAEFKG-GSSTYAYHISEP 260
EE +HAK+R A IYAE G G S+ AYH++ P
Sbjct: 256 EEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 150/272 (55%), Gaps = 33/272 (12%)
Query: 21 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGL 80
KRRVVVTGLG ++P+G+ + LL G SGIS I+ FD S T+ AG +K + + +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 81 VPPKHAKRADNYLIYALIAGKKALADAG--ITEQ--------------VSGELNKNRCGV 124
+ K ++ D ++ Y ++AG +A+ D+G ITE+ G + +N +
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSL 136
Query: 125 LIG-----------TAMGSMRA----LKDGIDAIKISYKKMTCATGNCCILTAANHIIEG 169
+ G + + +M A + G+ IS C +G I AA I G
Sbjct: 137 MNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIAT-ACTSGVHNIGHAARIIAYG 195
Query: 170 DADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEGAGVMLL 229
DAD+M+ GG++ P + GF A LS RN +P ASRPWD + DGFV+G+GAG+++L
Sbjct: 196 DADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVL 255
Query: 230 EELDHAKRRRANIYAEFKG-GSSTYAYHISEP 260
EE +HAK+R A IYAE G G S+ AYH++ P
Sbjct: 256 EEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 152/299 (50%), Gaps = 40/299 (13%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIK-------T 74
RRVV+TGLG V+PL + +LL G SG ++ F+ +L +IA I T
Sbjct: 10 RRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGT 69
Query: 75 LSTDGLVPPKHAKRADNYLIYALIAGKKALADAGI-----TEQV---------------- 113
+ D + PK ++ D +++YA+ A +AL DAG +QV
Sbjct: 70 FNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVLIGSGIGGIEGI 129
Query: 114 --SGELNKNRCGVLIGTAMGSMRALKDGIDAIKISYK--------KMTCATGNCCILTAA 163
+G +++ I R + + I +K CATG I AA
Sbjct: 130 VEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHAIGDAA 189
Query: 164 NHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLS-RRNSDPTKASRPWDSDHDGFVMGE 222
I GDAD+M+ GG++ + +AGF AC LS RN DPT ASRP+D D DGFVMGE
Sbjct: 190 RLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDGFVMGE 249
Query: 223 GAGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKALTNSGV 280
GAG+++LEEL+HA R A IYAE G G S A+HI+ P + GA CM AL +G+
Sbjct: 250 GAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAGI 308
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 153/295 (51%), Gaps = 38/295 (12%)
Query: 23 RVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLVP 82
RVVVTG G +P+G+ F+ L G GI I FD S+ A EI+ D
Sbjct: 25 RVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFV 84
Query: 83 PKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGIDA 142
K R DNY +YAL A ++A+ A + + LN++R GV++ + +G ++ ++D +
Sbjct: 85 KKDTNRFDNYSLYALYAAQEAVNHANLDVEA---LNRDRFGVIVASGIGGIKEIEDQVLR 141
Query: 143 IKIS----YKKMTC-------ATGNCCILTAANHIIE-------------GDA------- 171
+ K MT A+GN + AN + + GDA
Sbjct: 142 LHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFG 201
Query: 172 --DMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEGAGVMLL 229
D+ML GG++ I P IAGF A LS DPT+AS P+D D +GFVMGEG+G+++L
Sbjct: 202 FQDVMLVGGTEASITPFAIAGFQALTALS-TTEDPTRASIPFDKDRNGFVMGEGSGMLVL 260
Query: 230 EELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKALTNSGVSGE 283
E L+HA++R A I AE G G++ AYH++ P GA+ ++ AL + +S E
Sbjct: 261 ESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPE 315
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 153/295 (51%), Gaps = 38/295 (12%)
Query: 23 RVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLVP 82
RVVVTG G +P+G+ F+ L G GI I FD S+ A EI+ D
Sbjct: 24 RVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFV 83
Query: 83 PKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGIDA 142
K R DNY +YAL A ++A+ A + + LN++R GV++ + +G ++ ++D +
Sbjct: 84 KKDTNRFDNYSLYALYAAQEAVNHANLDVEA---LNRDRFGVIVASGIGGIKEIEDQVLR 140
Query: 143 IKIS----YKKMTC-------ATGNCCILTAANHIIE-------------GDA------- 171
+ K MT A+GN + AN + + GDA
Sbjct: 141 LHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFG 200
Query: 172 --DMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEGAGVMLL 229
D+ML GG++ I P IAGF A LS DPT+AS P+D D +GFVMGEG+G+++L
Sbjct: 201 FQDVMLVGGTEASITPFAIAGFQALTALS-TTEDPTRASIPFDKDRNGFVMGEGSGMLVL 259
Query: 230 EELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKALTNSGVSGE 283
E L+HA++R A I AE G G++ AYH++ P GA+ ++ AL + +S E
Sbjct: 260 ESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPE 314
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 151/273 (55%), Gaps = 35/273 (12%)
Query: 21 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGL 80
KRRVVVTGLG ++P+G+ + LL G SGIS I+ FD S T+ AG +K + + +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 81 VPPKHAKRADNYLIYALIAGKKALADAG--ITEQ--------------VSGELNKNRCGV 124
+ K ++ D ++ Y ++AG +A+ D+G ITE+ G + +N +
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSL 136
Query: 125 LIG-----------TAMGSMRA----LKDGIDAIKISYKKMTCAT-GNCCILTAANHIIE 168
+ G + + +M A + G+ IS T AT G I AA I
Sbjct: 137 MNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIA--TAATSGVHNIGHAARIIAY 194
Query: 169 GDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEGAGVML 228
GDAD+M+ GG++ P + GF A LS RN +P ASRPWD + DGFV+G+GAG+++
Sbjct: 195 GDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLV 254
Query: 229 LEELDHAKRRRANIYAEFKG-GSSTYAYHISEP 260
LEE +HAK+R A IYAE G G S+ AYH++ P
Sbjct: 255 LEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 154/304 (50%), Gaps = 58/304 (19%)
Query: 21 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGL 80
+RVV+TG+GA++P+G+D + L+GV+GI +I D +AGE+K + +
Sbjct: 27 NKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDH 86
Query: 81 VPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKN---RCGVLIGTAMGSMRALK 137
+ K A+R D + YA++A ++A+ DA + ++N+N R GV IG+ +G
Sbjct: 87 IDKKEARRMDRFTQYAIVAAREAVKDAQL------DINENTADRIGVWIGSGIG------ 134
Query: 138 DGIDAIKISYKKM----------------------------------------TCATGNC 157
G++ +I++K++ CATG
Sbjct: 135 -GMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTN 193
Query: 158 CILTAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDG 217
I A + GDAD M+ GG++ I IAGF A LS N D A RP+ DG
Sbjct: 194 SIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST-NDDIETACRPFQEGRDG 252
Query: 218 FVMGEGAGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKALT 276
FVMGEGAG++++E L+ A+ R ANIYAE G G++ AYHI+ P G M+ A+
Sbjct: 253 FVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMD 312
Query: 277 NSGV 280
++G+
Sbjct: 313 DAGI 316
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 149/272 (54%), Gaps = 33/272 (12%)
Query: 21 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGL 80
KRRVVVTGLG ++P+G+ + LL G SGIS I+ FD S T+ AG +K + + +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 81 VPPKHAKRADNYLIYALIAGKKALADAG--ITEQ--------------VSGELNKNRCGV 124
+ K ++ D ++ Y ++AG +A+ D+G ITE+ G + +N +
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSL 136
Query: 125 LIG-----------TAMGSMRA----LKDGIDAIKISYKKMTCATGNCCILTAANHIIEG 169
+ G + + +M A + G+ IS +G I AA I G
Sbjct: 137 MNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQT-SGVHNIGHAARIIAYG 195
Query: 170 DADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEGAGVMLL 229
DAD+M+ GG++ P + GF A LS RN +P ASRPWD + DGFV+G+GAG+++L
Sbjct: 196 DADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVL 255
Query: 230 EELDHAKRRRANIYAEFKG-GSSTYAYHISEP 260
EE +HAK+R A IYAE G G S+ AYH++ P
Sbjct: 256 EEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 152/296 (51%), Gaps = 38/296 (12%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLV 81
RVVVTG G +P+G+ F+ L G GI I FD S+ A EI+ D
Sbjct: 23 NRVVVTGYGVTSPIGNTPAEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYF 82
Query: 82 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 141
K R DNY +YAL A ++A+ A + LN++R GV++ + +G ++ ++D +
Sbjct: 83 VKKDTNRFDNYSLYALYAAQEAVNHANLD---VAALNRDRFGVIVASGIGGIKEIEDQVL 139
Query: 142 AIKIS----YKKMTC-------ATGNCCILTAANHIIE-------------GDA------ 171
+ K MT A+GN + AN + + GDA
Sbjct: 140 RLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKF 199
Query: 172 ---DMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEGAGVML 228
D+ML GG++ I P IAGF A LS DPT+AS P+D D +GFVMGEG+G+++
Sbjct: 200 GFQDVMLVGGTEASITPFAIAGFQALTALS-TTEDPTRASIPFDKDRNGFVMGEGSGMLV 258
Query: 229 LEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKALTNSGVSGE 283
LE L+HA++R A I AE G G++ AYH++ P GA+ ++ AL + +S E
Sbjct: 259 LESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPE 314
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 150 bits (379), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 156/306 (50%), Gaps = 44/306 (14%)
Query: 18 PEVKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIK---- 73
P RRVV+TGLG V+PL D + +LLEG SG+ +I FD S+L +IA I
Sbjct: 2 PGSMRRVVITGLGLVSPLAGDVEYSWKRLLEGKSGVRRITEFDVSDLSCQIAARIPVGDG 61
Query: 74 ---TLSTDGLVPPKHAKRADNYLIYALIAG----------KKALAD-------------- 106
T + D + K ++ D +++YA+ A K+ D
Sbjct: 62 TNGTYNADLHMESKEQRKVDAFIVYAIAAADQALADAEWFPKSDEDQICTGVLIGSGIGG 121
Query: 107 ------AGITEQVSGELNKNRC---GVLIGTAMGSMRALKDGIDAIKISYKKMTCATGNC 157
AG T + G + G LI A G + ++K G+ S C+TG
Sbjct: 122 IEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGYV-SIKYGLRGPNHSV-VTACSTGAH 179
Query: 158 CILTAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSR-RNSDPTKASRPWDSDHD 216
I AA I GDAD+ML GG++ I +AGF AC LS RN DP +ASRP+D D D
Sbjct: 180 AIGDAARLIALGDADVMLAGGTESPINRISLAGFSACRALSTCRNDDPERASRPYDVDRD 239
Query: 217 GFVMGEGAGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKAL 275
GFVMGEGA +++LEEL+HAK+R A IYAE G G S AYHI+ P + GA M AL
Sbjct: 240 GFVMGEGAAIVVLEELEHAKKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQRSMMAAL 299
Query: 276 TNSGVS 281
+ V+
Sbjct: 300 KRAQVN 305
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 144/304 (47%), Gaps = 43/304 (14%)
Query: 20 VKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDG 79
+ RRVV+TG+G VTPLG HL + +L+ G SGI + G + +P +A + S +G
Sbjct: 19 LHRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEG 78
Query: 80 ------LVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSM 133
V K + I A+ A + A+ D+G Q E ++ GV IG M +
Sbjct: 79 QFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPL 136
Query: 134 RALKD-------------------------GIDAIKISYK--------KMTCATGNCCIL 160
+ + + I YK C TG +
Sbjct: 137 EVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVG 196
Query: 161 TAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVM 220
+ I GDAD+M+ GG+D I P +AGF LS NSDP A RP+ DGFVM
Sbjct: 197 DSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALS-TNSDPKLACRPFHPKRDGFVM 255
Query: 221 GEGAGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKALTNSG 279
GEGA V++LEE +HA +RRA IYAE G G S A HI+ P GA+ CM AL ++G
Sbjct: 256 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAG 315
Query: 280 VSGE 283
V E
Sbjct: 316 VQPE 319
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 147/304 (48%), Gaps = 43/304 (14%)
Query: 20 VKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDG 79
+ RRVV+TG+G VTPLG HL + +L+ G SGI + G + +P +A + S +G
Sbjct: 25 LHRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEG 84
Query: 80 ------LVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSM 133
V K + I A+ A + A+ D+G Q E ++ GV IG M +
Sbjct: 85 QFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPL 142
Query: 134 RALKD-GIDAIKISYKKMT----------CATGNCCI---LTAANH-------------- 165
+ + ++ Y K++ A G I L NH
Sbjct: 143 EVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTGAHAVG 202
Query: 166 -----IIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVM 220
I GDAD+M+ GG+D I P +AGF LS NSDP A RP+ DGFVM
Sbjct: 203 DSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALS-TNSDPKLACRPFHPKRDGFVM 261
Query: 221 GEGAGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKALTNSG 279
GEGA V++LEE +HA +RRA IYAE G G S A HI+ P GA+ CM AL ++G
Sbjct: 262 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAG 321
Query: 280 VSGE 283
V E
Sbjct: 322 VQPE 325
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 153/309 (49%), Gaps = 50/309 (16%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGIS-------QIEGFD-------CSELPTR 67
RRVVVTGLG VTPLG + +L++G GI +++ FD +L ++
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 68 IAGEIKTLSTDGLVPPK---HAKRADNYLIYALIAGKKALADAGI--TEQVSGELNKNR- 121
+A + S G ++K N++ YA+ A +AL DA TE+ E
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSI 120
Query: 122 -------CGVLIGTAMGSMRALK---------------DGIDAIKISYKK------MTCA 153
C ++ + + L+ G ++K ++ CA
Sbjct: 121 GGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACA 180
Query: 154 TGNCCILTAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRR-NSDPTKASRPWD 212
TG I A I GDAD+M+ GG++ I +AGF LS + NS P +ASRP+D
Sbjct: 181 TGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFD 240
Query: 213 SDHDGFVMGEGAGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACM 271
D DGFV+GEG+GV++LEE +HAKRR A IYAE G G S A+HI++P + GA+ M
Sbjct: 241 CDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAM 300
Query: 272 EKALTNSGV 280
+AL SG+
Sbjct: 301 TRALRQSGL 309
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 146/304 (48%), Gaps = 45/304 (14%)
Query: 23 RVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTD---G 79
RVVVTG+G V+PLG L + +L+ G SG+ ++ EL ++ G ++ ++ D G
Sbjct: 25 RVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGG 84
Query: 80 L-----VPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMR 134
VP K ++ D ++ A++A +ALA+AG + E + R ++ + +G
Sbjct: 85 FDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVVASGIGGFP 142
Query: 135 ALKDGID-----------------------AIKISYKK----------MTCATGNCCILT 161
L + + A +IS K CA I
Sbjct: 143 GLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQAIGD 202
Query: 162 AANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNS-DPTKASRPWDSDHDGFVM 220
A I G+AD++L GG++ + GF A LS S +P +ASRP+D D DGFVM
Sbjct: 203 AMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVM 262
Query: 221 GEGAGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKALTNSG 279
GEGA ++++E LDHA R A AE G G++ AYH++ + GAM M+ AL
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGD 322
Query: 280 VSGE 283
V+ E
Sbjct: 323 VAPE 326
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 146/304 (48%), Gaps = 45/304 (14%)
Query: 23 RVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTD---G 79
RVVVTG+G V+PLG L + +L+ G SG+ ++ EL ++ G ++ ++ D G
Sbjct: 25 RVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGG 84
Query: 80 L-----VPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMR 134
VP K ++ D ++ A++A +ALA+AG + E + R ++ + +G
Sbjct: 85 FDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVVASGIGGFP 142
Query: 135 ALKDGI-----------DAIKISYKKMTCATGNC-----------CILTAANHIIE---- 168
L + + I + A G C +TA ++
Sbjct: 143 GLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTAXAASVQAIGD 202
Query: 169 -------GDADMMLCGGSDGVIIPECIAGFIACNNLSRRNS-DPTKASRPWDSDHDGFVM 220
G+AD++L GG++ + GF A LS S +P +ASRP+D D DGFVM
Sbjct: 203 AMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVM 262
Query: 221 GEGAGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKALTNSG 279
GEGA ++++E LDHA R A AE G G++ AYH++ + GAM M+ AL
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGD 322
Query: 280 VSGE 283
V+ E
Sbjct: 323 VAPE 326
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 143/290 (49%), Gaps = 42/290 (14%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLV 81
+RVV+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 82 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 141
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 142 AIK-----------ISYKKMT-----------------------CATGNCCILTAANHII 167
A++ + K M CAT CI A I
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 168 EGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSD-PTKASRPWDSDHDGFVMGEGAGV 226
G D++ GG + + E F A LS + +D P KASR +D+ DGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 227 MLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKAL 275
+++EEL+HA R A+IYAE G G+++ + P + GA+ CM+ A+
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM 297
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 143/290 (49%), Gaps = 42/290 (14%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLV 81
+RVV+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 82 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 141
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 142 AIK-----------ISYKKMT-----------------------CATGNCCILTAANHII 167
A++ + K M CAT CI A I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 168 EGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSD-PTKASRPWDSDHDGFVMGEGAGV 226
G D++ GG + + E F A LS + +D P KASR +D+ DGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 227 MLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKAL 275
+++EEL+HA R A+IYAE G G+++ + P + GA+ CM+ A+
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM 285
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 142/290 (48%), Gaps = 42/290 (14%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLV 81
+R V+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 82 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 141
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 142 AIK-----------ISYKKMT-----------------------CATGNCCILTAANHII 167
A++ + K M CAT CI A I
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 168 EGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSD-PTKASRPWDSDHDGFVMGEGAGV 226
G D++ GG + + E F A LS + +D P KASR +D+ DGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 227 MLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKAL 275
+++EEL+HA R A+IYAE G G+++ + P + GA+ CM+ A+
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM 297
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 142/290 (48%), Gaps = 42/290 (14%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLV 81
+R V+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 82 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 141
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 142 AIK-----------ISYKKMT-----------------------CATGNCCILTAANHII 167
A++ + K M CAT CI A I
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 168 EGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSD-PTKASRPWDSDHDGFVMGEGAGV 226
G D++ GG + + E F A LS + +D P KASR +D+ DGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 227 MLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKAL 275
+++EEL+HA R A+IYAE G G+++ + P + GA+ CM+ A+
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM 297
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 142/290 (48%), Gaps = 42/290 (14%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLV 81
+R V+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 82 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 141
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 142 AIK-----------ISYKKMT-----------------------CATGNCCILTAANHII 167
A++ + K M CAT CI A I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 168 EGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSD-PTKASRPWDSDHDGFVMGEGAGV 226
G D++ GG + + E F A LS + +D P KASR +D+ DGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 227 MLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKAL 275
+++EEL+HA R A+IYAE G G+++ + P + GA+ CM+ A+
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM 285
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 142/290 (48%), Gaps = 42/290 (14%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLV 81
+R V+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 82 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 141
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 142 AIK-----------ISYKKMT-----------------------CATGNCCILTAANHII 167
A++ + K M CAT CI A I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 168 EGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSD-PTKASRPWDSDHDGFVMGEGAGV 226
G D++ GG + + E F A LS + +D P KASR +D+ DGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 227 MLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKAL 275
+++EEL+HA R A+IYAE G G+++ + P + GA+ CM+ A+
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM 285
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 122/279 (43%), Gaps = 43/279 (15%)
Query: 20 VKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDG 79
+KRRVV+TG+G P G+ F+ L G + +I FD S +++A E
Sbjct: 1 MKRRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAE 60
Query: 80 LVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDG 139
P+ R D +A+ ++A A +G+ L+ R GV +G+A+ + +L+
Sbjct: 61 GFGPRELDRMDRASQFAVACAREAFAASGLDPDT---LDPARVGVSLGSAVAAATSLERE 117
Query: 140 ------------IDAIKISYKKMT---------------------------CATGNCCIL 160
+DA +S C +G +
Sbjct: 118 YLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVG 177
Query: 161 TAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVM 220
A I EG AD+M G +D I P +A F A + RN DP ASRP+D DGFV+
Sbjct: 178 NAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFVL 237
Query: 221 GEGAGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHIS 258
EGA + +LE+ D A R A I+AE G + AYH++
Sbjct: 238 AEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMT 276
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 141/290 (48%), Gaps = 42/290 (14%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLV 81
+RVV+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 82 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 141
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 142 AIK-----------ISYKKMTCATGNC-----------------------CILTAANHII 167
A++ + K M C CI A I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQ 178
Query: 168 EGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSD-PTKASRPWDSDHDGFVMGEGAGV 226
G D++ GG + + E F A LS + +D P KASR +D+ DGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 227 MLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKAL 275
+++EEL+HA R A+IYAE G G+++ + P + GA+ CM+ A+
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM 285
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 141/290 (48%), Gaps = 42/290 (14%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLV 81
+RVV+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 82 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 141
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 142 AIK-----------ISYKKMTCATGNC-----------------------CILTAANHII 167
A++ + K M C CI A I
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQ 190
Query: 168 EGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSD-PTKASRPWDSDHDGFVMGEGAGV 226
G D++ GG + + E F A LS + +D P KASR +D+ DGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 227 MLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKAL 275
+++EEL+HA R A+IYAE G G+++ + P + GA+ CM+ A+
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM 297
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 140/290 (48%), Gaps = 42/290 (14%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLV 81
+R V+TGLG V+ +G++ L EG SGI+ + S + + + G +K L T GL+
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 82 PPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGID 141
K + + IYA ++ ++A+ADAG++ + N R G++ G+ GS R G D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 142 AIK-----------ISYKKMTCATGNC-----------------------CILTAANHII 167
A++ + K M C CI A I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSAXATSAHCIGNAVEQIQ 178
Query: 168 EGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSD-PTKASRPWDSDHDGFVMGEGAGV 226
G D++ GG + + E F A LS + +D P KASR +D+ DGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 227 MLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKAL 275
+++EEL+HA R A+IYAE G G+++ + P + GA+ CM+ A+
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAM 285
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 128/278 (46%), Gaps = 38/278 (13%)
Query: 18 PEVKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSE-LPTRIAGEIKTLS 76
P +RVV+TG+G VT LG L G + + ++ +D E L TR+A + +
Sbjct: 2 PGSMKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFA 61
Query: 77 TDGLVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRAL 136
P K + +YA+ A + ALADAG S ++ R GV G++ GS+ +
Sbjct: 62 QPADWPRKKTRSMGRVSMYAVRASELALADAGFAGDES--ISDGRMGVAYGSSSGSVEPI 119
Query: 137 K---------DGIDAIKISYKKM------------------------TCATGNCCILTAA 163
+ D SY +M CA+G+ I A
Sbjct: 120 RAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTSSACASGSQAIGYAY 179
Query: 164 NHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEG 223
+I G +ML GG++ + P +A F S RN +P RP+D+ DG V+GEG
Sbjct: 180 ENIAMGKQTLMLAGGAEELSGP-AVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEG 238
Query: 224 AGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEP 260
A ++LEE +HAK R A I+AE G G ++ H+++P
Sbjct: 239 AATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP 276
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 142/305 (46%), Gaps = 52/305 (17%)
Query: 12 KSEKVAPEVKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIE-----GFDCSELPT 66
+++ P RRVVVTG+G V+ +G + L E SGIS+ E GF C
Sbjct: 13 EAQTQGPGSMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRC----- 67
Query: 67 RIAGEIKTLSTDGLVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLI 126
++ G + + LV + + + IA +A+ADAG+TE+ E++ R G+++
Sbjct: 68 QVHGA-PDIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIM 123
Query: 127 GTAMGSMRALKDGIDAIK--------------------------------ISYK-KMTCA 153
G+ S R + D D + I+Y CA
Sbjct: 124 GSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACA 183
Query: 154 TGNCCILTAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSD-PTKASRPWD 212
T N CI A I G D M GG + + + F A +S + +D P+ ASR +D
Sbjct: 184 TSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYD 242
Query: 213 SDHDGFVMGEGAGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACM 271
+ DGFV+ GAGV++LE+L+ A R A IY E G G+++ Y + P + GA+ CM
Sbjct: 243 KNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCM 300
Query: 272 EKALT 276
+ AL+
Sbjct: 301 KMALS 305
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 139/299 (46%), Gaps = 52/299 (17%)
Query: 18 PEVKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIE-----GFDCSELPTRIAGEI 72
P RRVVVTG+G V+ +G + L E SGIS+ E GF C ++ G
Sbjct: 2 PGSMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRC-----QVHGA- 55
Query: 73 KTLSTDGLVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGS 132
+ + LV + + + IA +A+ADAG+TE+ E++ R G+++G+ S
Sbjct: 56 PDIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPS 112
Query: 133 MRALKDGIDAIK--------------------------------ISYK-KMTCATGNCCI 159
R + D D + I+Y CAT N CI
Sbjct: 113 TRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCI 172
Query: 160 LTAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSD-PTKASRPWDSDHDGF 218
A I G D M GG + + + F A +S + +D P+ ASR +D + DGF
Sbjct: 173 GNAYEMIQYGKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYDKNRDGF 231
Query: 219 VMGEGAGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACMEKALT 276
V+ GAGV++LE+L+ A R A IY E G G+++ Y + P + GA+ CM+ AL+
Sbjct: 232 VIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALS 288
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 132/298 (44%), Gaps = 49/298 (16%)
Query: 24 VVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQ-----IEGFDCSELPTRIAGEIKTLSTD 78
VVVTG+ T L DA + LL+ SGI +E FD LP RI G + D
Sbjct: 30 VVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFD---LPVRIGGHLLE-EFD 85
Query: 79 GLVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKD 138
+ +R + + ++ +AG S E++ NR V IGT +GS L
Sbjct: 86 HQLTRIELRRMGYLQRMSTVLSRRLWENAG-----SPEVDTNRLMVSIGTGLGSAEELVF 140
Query: 139 GIDAIK---------ISYKK--------------------MT----CATGNCCILTAANH 165
D ++ ++ +K MT CA+G I A
Sbjct: 141 SYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASGAEAIARAWQQ 200
Query: 166 IIEGDADMMLCGGSDGVIIPECIAGFIACN-NLSRRNSDPTKASRPWDSDHDGFVMGEGA 224
I+ G+AD +CGG + I IAGF +S N DP A RP+D D DGFV GEG
Sbjct: 201 IVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEGG 260
Query: 225 GVMLLEELDHAKRRRANIYAEFKGGSSTY-AYHISEPRLNALGAMACMEKALTNSGVS 281
++L+E +HAK R ANI A G S T +H+ P N A + +A+ +G++
Sbjct: 261 ALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLA 318
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 152 CATGNCCILTAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPW 211
C++G+ I A I+ GDAD+ +CGG +G I IA F +S RN +P +ASRP+
Sbjct: 171 CSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPF 230
Query: 212 DSDHDGFVMGEGAGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMAC 270
D D DGFV GE +ML+E +HAK R A A G G ++ A+H+ P + + A
Sbjct: 231 DKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRA 290
Query: 271 MEKALTNSGVS 281
M ++L +G+S
Sbjct: 291 MTRSLELAGLS 301
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
Query: 153 ATGNCCILTAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWD 212
++G+ I A I+ GDAD+ +CGG +G I IA F +S RN +P +ASRP+D
Sbjct: 172 SSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFD 231
Query: 213 SDHDGFVMGEGAGVMLLEELDHAKRRRANIYAEFKG-GSSTYAYHISEPRLNALGAMACM 271
D DGFV GE +ML+E +HAK R A A G G ++ A+H+ P + + A M
Sbjct: 232 KDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAM 291
Query: 272 EKALTNSGVS 281
++L +G+S
Sbjct: 292 TRSLELAGLS 301
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 127/264 (48%), Gaps = 34/264 (12%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLST-DGL 80
+R V+TGLG V+ +G++ L EG SGI+ + F + + + G++K S L
Sbjct: 5 KRAVITGLGIVSSIGNNQQEVLASLQEGRSGITFAQEFKDAGXRSHVWGDVKLQSEPKDL 64
Query: 81 VPPKHAKRADNYLIYALIAGKKALADAGITE-QVSG---------ELNKNRCGVLIGTAM 130
+ K + + IYA +A ++A+AD+G+++ QVS R V A
Sbjct: 65 IDRKVLRFXSDASIYAYLAXQEAIADSGLSDSQVSNFRSGLVVGSGGGSPRNQVAGSDAX 124
Query: 131 GSMRALK------------DGIDA-------IK-ISYK-KMTCATGNCCILTAANHIIEG 169
+ R LK G+ A IK ++Y CAT CI A I G
Sbjct: 125 RTPRGLKGVGPYXVTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIGHALELIQLG 184
Query: 170 DADMMLCGGSDGVIIPECIAGFIACNNLSRRNSD-PTKASRPWDSDHDGFVMGEGAGVML 228
D++ GG + + E F A LS + +D P KASR +D D DGFV+ G G ++
Sbjct: 185 KQDIVFAGGGEELCW-EXACEFDAXGALSTKYNDTPAKASRTYDQDRDGFVIAGGGGXVV 243
Query: 229 LEELDHAKRRRANIYAEFKGGSST 252
+EEL+HA R A+IYAE G +T
Sbjct: 244 VEELEHALARGAHIYAEIVGYGAT 267
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 110/262 (41%), Gaps = 31/262 (11%)
Query: 22 RRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLSTDGLV 81
+ V++TG+G V P G +++ +L+G G+ + FD S P +AG+I +
Sbjct: 9 KSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHI 68
Query: 82 PPKHAKRADNYLIYALIAGKKALADA-----GITEQVSGELNKNRCG------------- 123
P + + D AL A AL DA +T+ G + N CG
Sbjct: 69 PGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKLW 128
Query: 124 ------VLIGTAMGSMRALKDGIDAIKISYKKMTCA-----TGNCCILTAANHIIEGDAD 172
V + + A+ G +I+ + + A G L A I
Sbjct: 129 SEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRGTP 188
Query: 173 MMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEGAGVMLLEEL 232
+++ GG D + P IA +S +DP +A P+D G+V GEG +++LE+
Sbjct: 189 LVVSGGVDSALDPWGWVSQIASGRIS-TATDPDRAYLPFDERAAGYVPGEGGAILVLEDS 247
Query: 233 DHAKRR-RANIYAEFKGGSSTY 253
A+ R R + Y E G +ST+
Sbjct: 248 AAAEARGRHDAYGELAGCASTF 269
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 37.0 bits (84), Expect = 0.013, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 21/149 (14%)
Query: 152 CATGNCCILTAANHIIEGDADMMLCGGSDGVIIPECIAGF-----IACNNLSR-RNSDPT 205
CAT + + I G AD+++ GG D + + E I GF A + R + +
Sbjct: 2740 CATAAVSVEEGVDKIKLGKADLVIAGGFDDLTL-EAIIGFGDMAATADTEMMRAKGISDS 2798
Query: 206 KASRPWDSDHDGFVMGEGAGVMLLEELDHAKRRRANIYA------EFKGGSSTYAYHISE 259
K SR D GF+ +G G +LL D A + + A F G T I
Sbjct: 2799 KFSRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHT---SIPA 2855
Query: 260 PRLNALGAM-----ACMEKALTNSGVSGE 283
P L ALGA + + ++L GV +
Sbjct: 2856 PGLGALGAARGGRESTLARSLAQLGVGAD 2884
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 34.3 bits (77), Expect = 0.071, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 152 CATGNCCILTAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPW 211
C++G + A + + + L GG P F + L+ +P+
Sbjct: 199 CSSGLTALHLAXESLRRDECGLALAGGVTVXSSPGAFTEFRSQGGLAADGR-----CKPF 253
Query: 212 DSDHDGFVMGEGAGVMLLEELDHAKRRRANIYAEFKGGS 250
DGF + EGAGV++L+ L A+R + A +G +
Sbjct: 254 SKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRGSA 292
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 91/252 (36%), Gaps = 42/252 (16%)
Query: 24 VVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIE---GFDCSELPTRIAGEIKTLSTDGL 80
VV+ G+ P ++ F+ L+ GV ++ + LP R +G++K LS
Sbjct: 6 VVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRR-SGKLKDLSRFDA 64
Query: 81 ----VPPKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTA------- 129
V PK A D L L +A+ D GI L GV +G +
Sbjct: 65 SFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPD---SLRGTHTGVWVGVSGSETSEA 121
Query: 130 -------------MGSMRALKDGIDAIKISYKKMTCATGNCC------ILTAANHIIEGD 170
+G RA+ + ++ + A C + A I G
Sbjct: 122 LSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQNAYQAIHSGQ 181
Query: 171 ADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKASRPWDSDHDGFVMGEGAGVMLLE 230
+ GG + ++ P F+ LS P + +D+ +G+ EG +LL
Sbjct: 182 CPAAIVGGINVLLKPNTSVQFLRLGMLS-----PEGTCKAFDTAGNGYCRSEGVVAVLLT 236
Query: 231 ELDHAKRRRANI 242
+ A+R A I
Sbjct: 237 KKSLARRVYATI 248
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 39/188 (20%)
Query: 81 VPPKHAKRADNYLIYALIAGKKALADAGITE--QVSGELNKNRCGVLIGTAMGSMRAL-- 136
VP ++ D +Y L++ +AL +GIT+ + ++ + G IG+ +G AL
Sbjct: 1175 VPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRG 1234
Query: 137 --KDGI-------DAIKISYKKMTCATGNCCILTAA---------------------NHI 166
KD D ++ S+ A N +L++ + I
Sbjct: 1235 MYKDRYLDKPVQKDILQESFVNTMAAWVNMLLLSSTGPIKTPVGACATAVESLDVGYDTI 1294
Query: 167 IEGDADMMLCGGSDGVIIPEC--IAGFIACNNLSR---RNSDPTKASRPWDSDHDGFVMG 221
++G A + L GG D A A +N R +P + SRP + +GF+
Sbjct: 1295 MQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFMES 1354
Query: 222 EGAGVMLL 229
+G GV ++
Sbjct: 1355 QGCGVQVI 1362
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 33.1 bits (74), Expect = 0.18, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 152 CATGNCCILTAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNSDPTKA-SRP 210
C++ + A + +G++ M + GG+ + P F SR+ + S+
Sbjct: 177 CSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDF------SRQRALAADGRSKA 230
Query: 211 WDSDHDGFVMGEGAGVMLLEELDHAKRRRANIYAEFKGGS 250
+ + DGF EG ++LLE L A+R + A +G +
Sbjct: 231 FGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRGSA 270
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 152 CATGNCCILTAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNS--------D 203
CAT + I+ G A + + GG D + F N + N+
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYDDF---QEEGSFEFGNMKATSNTLEEFEHGRT 1361
Query: 204 PTKASRPWDSDHDGFVMGEGAGVMLLEELDHAKRRRANIY 243
P + SRP + +GF+ +GAG+ ++ + D A + IY
Sbjct: 1362 PAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIY 1401
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 152 CATGNCCILTAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNS--------D 203
CAT + I+ G A + + GG D + F N + N+
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYDDF---QEEGSFEFGNMKATSNTLEEFEHGRT 1361
Query: 204 PTKASRPWDSDHDGFVMGEGAGVMLLEELDHAKRRRANIY 243
P + SRP + +GF+ +GAG+ ++ + D A + IY
Sbjct: 1362 PAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIY 1401
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 152 CATGNCCILTAANHIIEGDADMMLCGGSDGVIIPECIAGFIACNNLSRRNS--------D 203
CAT + I+ G A + + GG D + F N + N+
Sbjct: 1106 CATSVESVDIGVETILSGKARICIVGGYDDF---QEEGSFEFGNMKATSNTLEEFEHGRT 1162
Query: 204 PTKASRPWDSDHDGFVMGEGAGVMLLEELDHAKRRRANIY 243
P + SRP + +GF+ +GAG+ ++ + D A + IY
Sbjct: 1163 PAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIY 1202
>pdb|1N73|C Chain C, Fibrin D-Dimer, Lamprey Complexed With The Peptide Ligand:
Gly-His- Arg-Pro-Amide
pdb|1N73|F Chain F, Fibrin D-Dimer, Lamprey Complexed With The Peptide Ligand:
Gly-His- Arg-Pro-Amide
Length = 330
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 2 LLGKTTAVSAKSEKVAPEVKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDC 61
LL A + + E R G +TP D+ LFY+ L+G +G + +GFD
Sbjct: 157 LLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAG-NAFDGFDF 215
Query: 62 SELP 65
+ P
Sbjct: 216 GDDP 219
>pdb|1LWU|C Chain C, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|F Chain F, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|I Chain I, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|L Chain L, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
Length = 323
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 2 LLGKTTAVSAKSEKVAPEVKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDC 61
LL A + + E R G +TP D+ LFY+ L+G +G + +GFD
Sbjct: 157 LLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAG-NAFDGFDF 215
Query: 62 SELP 65
+ P
Sbjct: 216 GDDP 219
>pdb|1N93|X Chain X, Crystal Structure Of The Borna Disease Virus Nucleoprotein
Length = 375
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 122 CGVLIGTAMGSMRALKDGIDAIKISYKKMTCA 153
C +LIG +GS +K G + IK +K M A
Sbjct: 146 CSLLIGVVIGSSSKIKAGAEQIKKRFKTMMAA 177
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 15/135 (11%)
Query: 83 PKHAKRADNYLIYALIAGKKALADAGITEQVSGELNKNRCGVLIGTAMGSMRALKDGIDA 142
P AK L+ G A A I V ++ +++ TA G + + D +
Sbjct: 235 PNSAKDKQGRLLVGAAVGVTADAXTRIDALVKASVD----AIVLDTAHGHSQGVIDKVKE 290
Query: 143 IKISYKKMTCATGNCCILTAANHIIEGDADMMLCGGSDGVI----------IPECIAGFI 192
++ Y + GN A +IE A+++ G G I +P+ A +
Sbjct: 291 VRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVY- 349
Query: 193 ACNNLSRRNSDPTKA 207
C +R++ P A
Sbjct: 350 DCATEARKHGIPVIA 364
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 124 VLIGTAMGSMRALKDGIDAIKISYKKMTCATGNCCILTAANHIIEGDADMMLCGGSDGVI 183
+++ TA G + + D + ++ Y + GN A +IE A+++ G G I
Sbjct: 272 IVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSI 331
Query: 184 ----------IPECIAGFIACNNLSRRNSDPTKA 207
+P+ A + C +R++ P A
Sbjct: 332 CTTRVVAGVGVPQLTAVY-DCATEARKHGIPVIA 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,426,102
Number of Sequences: 62578
Number of extensions: 349054
Number of successful extensions: 989
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 94
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)