Query 041764
Match_columns 175
No_of_seqs 132 out of 1552
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 17:48:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nxu_A Cytochrome P450 3A4; al 99.9 2.7E-25 9.4E-30 168.4 12.6 144 30-175 9-169 (485)
2 3tbg_A Cytochrome P450 2D6; mo 99.9 4.8E-24 1.6E-28 161.3 13.9 145 30-175 5-171 (479)
3 3swz_A Steroid 17-alpha-hydrox 99.9 7.7E-24 2.6E-28 160.9 13.2 144 31-175 4-168 (494)
4 3s79_A Cytochrome P450 19A1; o 99.9 8.2E-24 2.8E-28 161.0 11.9 141 32-175 42-206 (503)
5 3e6i_A CYPIIE1, P450-J, cytoch 99.9 2.2E-23 7.6E-28 157.6 13.7 144 31-175 6-166 (476)
6 3k9v_A 1,25-dihydroxyvitamin D 99.9 3.6E-23 1.2E-27 156.6 14.4 147 27-175 16-190 (482)
7 3pm0_A Cypib1, cytochrome P450 99.9 2.3E-23 7.8E-28 158.6 12.4 143 31-175 5-172 (507)
8 2fdv_A Cytochrome P450 2A6; CY 99.9 7.1E-23 2.4E-27 155.1 14.3 141 34-175 9-167 (476)
9 3qz1_A Steroid 21-hydroxylase; 99.9 8.9E-24 3E-28 160.5 8.4 140 29-175 23-180 (496)
10 1po5_A Cytochrome P450 2B4; ox 99.9 9.7E-23 3.3E-27 154.3 13.4 141 34-175 9-167 (476)
11 1r9o_A Cytochrome P450 2C9; mo 99.9 1.3E-22 4.4E-27 153.7 10.4 141 34-175 10-168 (477)
12 2ve3_A Putative cytochrome P45 99.9 3.8E-22 1.3E-26 150.0 12.0 141 29-174 6-161 (444)
13 3czh_A Cytochrome P450 2R1; vi 99.9 3.8E-22 1.3E-26 151.3 12.0 143 32-175 9-172 (481)
14 2hi4_A Cytochrome P450 1A2; CY 99.9 8.5E-22 2.9E-26 149.9 13.1 142 32-175 13-183 (495)
15 3ld6_A Lanosterol 14-alpha dem 99.9 1.4E-22 4.7E-27 152.9 8.6 137 35-175 11-165 (461)
16 3gw9_A Sterol 14alpha-demethyl 99.9 2.9E-22 1E-26 150.4 9.3 139 34-175 2-159 (450)
17 2cib_A Cytochrome P450 51; hem 99.9 2.2E-21 7.5E-26 146.2 10.2 137 35-175 4-155 (455)
18 3i3k_A Lanosterol 14-alpha dem 99.9 1.2E-21 4.2E-26 147.6 8.6 140 31-174 7-164 (461)
19 2ij2_A Cytochrome P450 BM3; mo 99.9 2.4E-20 8.2E-25 141.1 15.3 138 35-175 3-160 (470)
20 3n9y_A Cholesterol SIDE-chain 99.8 6.3E-21 2.2E-25 144.6 11.1 143 30-175 4-177 (487)
21 3dbg_A Putative cytochrome P45 99.8 1E-20 3.4E-25 143.0 7.6 135 34-175 22-173 (467)
22 3v8d_A Cholesterol 7-alpha-mon 99.8 2E-20 6.9E-25 142.1 6.6 145 29-175 7-173 (491)
23 2cd8_A Cytochrome P450 monooxy 99.8 9E-20 3.1E-24 136.9 9.9 139 31-175 22-183 (436)
24 1n97_A CYP175A1; electron tran 99.8 1.6E-19 5.4E-24 133.6 6.2 129 39-175 3-147 (389)
25 3b6h_A Prostacyclin synthase; 99.8 1.5E-18 5.3E-23 131.9 9.9 144 30-175 13-173 (498)
26 3b98_A Prostaglandin I2 syntha 99.7 1.4E-18 4.7E-23 131.3 6.2 141 31-174 14-172 (475)
27 3dax_A Cytochrome P450 7A1; ch 99.7 3.2E-18 1.1E-22 129.8 7.5 144 30-175 8-173 (491)
28 3awm_A Fatty acid alpha-hydrox 99.7 3.2E-17 1.1E-21 122.2 10.8 129 37-175 4-151 (415)
29 1jfb_A Nitric-oxide reductase 99.7 7E-17 2.4E-21 119.9 12.2 134 36-175 2-160 (404)
30 1izo_A P450bsbeta, cytochrome 99.7 4.6E-17 1.6E-21 121.4 11.1 126 43-175 8-152 (417)
31 3mdm_A Cholesterol 24-hydroxyl 99.7 1.8E-16 6.2E-21 119.2 13.8 119 54-175 9-151 (456)
32 3dsk_A Cytochrome P450 74A, ch 99.7 1.2E-17 4E-22 127.0 7.2 144 30-175 23-201 (495)
33 1ued_A P450 OXYC, P450 monooxy 99.7 1.7E-16 5.9E-21 118.0 12.4 132 32-175 7-167 (406)
34 2zbx_A Cytochrome P450-SU1; be 99.6 2.3E-15 7.9E-20 112.1 12.3 134 35-175 5-165 (412)
35 3dan_A Cytochrome P450 74A2; A 99.6 7.4E-16 2.5E-20 116.3 7.7 143 31-175 5-183 (473)
36 1s1f_A Putative cytochrome P45 99.6 9.7E-15 3.3E-19 108.6 11.5 133 33-175 6-163 (406)
37 3ivy_A Cytochrome P450 CYP125; 99.6 9.5E-15 3.3E-19 109.5 11.3 134 34-174 17-184 (433)
38 3oo3_A OXY protein; cytochrome 99.6 2.3E-14 8E-19 105.7 11.2 118 54-175 11-149 (384)
39 2zwu_A Camphor 5-monooxygenase 99.6 4.2E-14 1.4E-18 105.5 12.5 138 30-175 6-170 (415)
40 3abb_A CYP105D6, cytochrome P4 99.6 3.5E-14 1.2E-18 105.6 11.7 119 50-175 20-164 (408)
41 2jjn_A Cytochrome P450 113A1; 99.6 8.7E-15 3E-19 109.0 7.8 129 25-175 9-154 (411)
42 1odo_A Putative cytochrome P45 99.5 3.8E-14 1.3E-18 105.4 10.2 117 54-175 14-159 (408)
43 1cpt_A Cytochrome P450-TERP; o 99.5 1.6E-14 5.5E-19 108.1 8.2 134 32-175 3-172 (428)
44 3aba_A Cytochrome P450; oxidor 99.5 6.7E-14 2.3E-18 104.0 11.2 116 54-175 18-157 (403)
45 2z36_A MOXA, cytochrome P450 t 99.5 4E-13 1.4E-17 100.1 12.4 117 54-175 21-166 (413)
46 1z8o_A 6-deoxyerythronolide B 99.5 1.7E-13 6E-18 101.7 10.3 115 54-175 13-159 (404)
47 3a4g_A Vitamin D hydroxylase; 99.5 1.9E-13 6.4E-18 101.8 9.8 115 54-175 19-156 (411)
48 3tyw_A Putative cytochrome P45 99.5 6.5E-13 2.2E-17 99.0 12.7 116 54-175 28-169 (417)
49 2wm5_A CYP124, putative cytoch 99.5 4.5E-13 1.5E-17 100.5 11.9 117 55-175 44-189 (435)
50 3ejb_B Biotin biosynthesis cyt 99.5 4.3E-13 1.5E-17 99.6 11.1 115 54-174 12-148 (404)
51 2xbk_A PIMD protein; epoxidati 99.5 2.2E-12 7.4E-17 95.9 14.4 116 54-175 25-167 (404)
52 2y5n_A MYCG, P-450-like protei 99.5 2.9E-13 9.9E-18 101.0 9.6 116 54-175 36-173 (417)
53 4fb2_A P450CIN; heme, monooxyg 99.5 8.3E-14 2.8E-18 103.3 6.3 116 54-175 18-153 (398)
54 2dkk_A Cytochrome P450; CYP158 99.5 6.8E-13 2.3E-17 98.8 11.1 116 54-175 26-166 (411)
55 1gwi_A CYP154C1, cytochrome P4 99.4 3.5E-13 1.2E-17 100.4 9.2 116 54-175 16-162 (411)
56 3tkt_A Cytochrome P450; aromat 99.4 3.7E-13 1.3E-17 101.3 9.4 114 57-175 47-194 (450)
57 2z3t_A Cytochrome P450; monoxy 99.4 2E-12 6.8E-17 96.7 12.9 115 54-175 19-167 (425)
58 1n40_A P450 MT2, cytochrome P4 99.4 1E-12 3.5E-17 97.4 9.7 115 54-175 15-152 (396)
59 1q5d_A P450 epoxidase; cytochr 99.4 1.4E-12 4.9E-17 97.3 10.5 113 54-175 25-164 (419)
60 2xkr_A CYP142, putative cytoch 99.4 1.1E-12 3.6E-17 97.3 8.3 113 54-175 17-144 (398)
61 2uuq_A CYP130, cytochrome P450 99.4 3.9E-12 1.3E-16 94.8 9.8 114 54-175 24-165 (414)
62 3mgx_A Putative P450 monooxyge 99.4 1.4E-12 4.7E-17 97.3 7.0 115 54-174 36-174 (415)
63 1lfk_A OXYB, P450 monooxygenas 99.3 5.9E-12 2E-16 93.4 9.0 112 59-175 17-158 (398)
64 3buj_A CALO2; heme, iron, meta 99.3 1.2E-11 4.3E-16 91.5 9.7 111 55-175 13-148 (397)
65 3oft_A Cytochrome P450, CYP101 99.3 1.2E-11 4E-16 91.6 9.6 114 54-174 23-154 (396)
66 3lxh_A Cytochrome P450; heme, 99.3 1.1E-11 3.9E-16 92.5 9.4 115 54-174 37-170 (421)
67 1io7_A Cytochrome P450 CYP119; 99.3 1.7E-11 5.7E-16 90.0 9.0 107 58-175 2-136 (368)
68 3nc3_A Cytochrome P450 CYPX; c 99.3 3.6E-12 1.2E-16 95.8 5.0 114 54-175 52-182 (441)
69 3r9b_A Cytochrome P450 164A2; 99.3 4.9E-11 1.7E-15 88.9 10.8 112 54-175 28-165 (418)
70 3rwl_A Cytochrome P450 alkane 99.2 5.9E-11 2E-15 88.8 10.0 115 54-174 37-179 (426)
71 2rfb_A Cytochrome P450; heme, 99.2 5.5E-11 1.9E-15 86.5 7.7 97 66-175 2-113 (343)
72 3b4x_A 367AA long hypothetical 99.1 2.4E-10 8.3E-15 83.8 7.4 104 58-175 2-133 (367)
73 3p3o_A Cytochrome P450; monoox 99.1 2.4E-10 8.2E-15 85.2 6.7 113 54-174 32-167 (416)
74 2wiy_A XPLA-heme, cytochrome P 99.1 2.9E-10 1E-14 84.2 6.8 112 55-175 20-148 (394)
75 4dnj_A Putative cytochrome P45 99.0 1E-09 3.6E-14 81.7 7.0 125 42-173 19-168 (412)
76 4dxy_A Cytochrome P450, CYP101 98.6 3.2E-07 1.1E-11 68.5 9.3 112 55-171 37-167 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 98.1 2.9E-08 9.9E-13 73.2 -6.2 117 36-175 35-177 (381)
78 1s79_A Lupus LA protein; RRM, 73.3 11 0.00037 21.7 5.9 58 45-105 15-80 (103)
79 1iqt_A AUF1, heterogeneous nuc 67.3 12 0.0004 19.6 5.0 46 57-102 12-66 (75)
80 2krb_A Eukaryotic translation 66.0 13 0.00046 19.9 6.4 39 58-96 21-66 (81)
81 2nlw_A Eukaryotic translation 64.0 18 0.00061 20.6 5.3 52 44-96 18-80 (105)
82 3ctr_A Poly(A)-specific ribonu 59.2 8.4 0.00029 22.4 2.6 49 58-106 19-70 (101)
83 3beg_B Splicing factor, argini 56.3 27 0.00093 20.3 5.9 49 45-96 20-70 (115)
84 2diu_A KIAA0430 protein; struc 55.0 28 0.00096 20.0 5.5 51 45-96 13-65 (96)
85 2mss_A Protein (musashi1); RNA 52.6 23 0.0008 18.4 4.9 46 57-102 12-66 (75)
86 1x4c_A Splicing factor, argini 52.5 31 0.001 19.7 5.6 49 45-96 19-69 (108)
87 3d2w_A TAR DNA-binding protein 50.1 30 0.001 19.0 4.9 47 44-93 14-64 (89)
88 3s7r_A Heterogeneous nuclear r 49.1 30 0.001 18.6 4.0 52 45-99 15-75 (87)
89 3lqv_A PRE-mRNA branch site pr 47.9 38 0.0013 19.4 7.2 64 37-103 4-74 (115)
90 1whv_A Poly(A)-specific ribonu 46.3 30 0.001 20.1 3.5 48 57-104 28-78 (100)
91 4f25_A Polyadenylate-binding p 44.1 45 0.0015 19.3 5.1 49 45-96 9-64 (115)
92 2cpi_A CCR4-NOT transcription 41.9 28 0.00096 20.0 3.2 49 45-96 19-82 (111)
93 2dh8_A DAZ-associated protein 41.6 45 0.0015 18.7 4.1 51 45-98 20-79 (105)
94 2dnh_A Bruno-like 5, RNA bindi 40.5 48 0.0016 18.5 4.7 49 45-96 19-75 (105)
95 3v4m_A Splicing factor U2AF 65 39.4 54 0.0018 18.8 5.5 46 59-104 30-87 (105)
96 4fxv_A ELAV-like protein 1; RN 39.3 51 0.0017 18.5 5.2 49 45-96 23-80 (99)
97 1sjr_A Polypyrimidine tract-bi 38.1 77 0.0026 20.2 5.6 48 46-96 51-103 (164)
98 3ex7_B RNA-binding protein 8A; 37.9 60 0.0021 18.9 6.0 49 45-96 26-83 (126)
99 2pe8_A Splicing factor 45; RRM 37.4 59 0.002 18.6 4.3 49 56-104 25-84 (105)
100 2cpf_A RNA binding motif prote 36.8 54 0.0018 18.0 4.9 49 45-96 9-69 (98)
101 1uaw_A Mouse-musashi-1; RNP-ty 36.7 46 0.0016 17.2 3.8 46 57-102 13-67 (77)
102 2voo_A Lupus LA protein; RNA-b 36.6 56 0.0019 21.1 4.3 48 56-103 121-176 (193)
103 1wf0_A TDP-43, TAR DNA-binding 35.6 52 0.0018 17.7 3.6 47 45-94 9-59 (88)
104 1p27_B RNA-binding protein 8A; 35.3 60 0.0021 18.1 6.1 49 45-96 27-84 (106)
105 2cq4_A RNA binding motif prote 35.2 64 0.0022 18.4 4.6 47 57-103 38-93 (114)
106 2wbr_A GW182, gawky, LD47780P; 35.1 62 0.0021 18.2 5.7 50 43-95 9-61 (89)
107 1oo0_B CG8781-PA, drosophila Y 34.9 63 0.0022 18.2 6.1 49 45-96 30-87 (110)
108 2cpz_A CUG triplet repeat RNA- 34.8 65 0.0022 18.4 4.5 49 45-96 29-86 (115)
109 2jwn_A Embryonic polyadenylate 34.7 68 0.0023 18.6 4.5 38 57-94 49-95 (124)
110 1whx_A Hypothetical protein ri 34.5 67 0.0023 18.4 5.9 49 57-105 23-75 (111)
111 2kvi_A Nuclear polyadenylated 34.2 60 0.0021 17.8 6.2 50 45-96 14-64 (96)
112 2hvz_A Splicing factor, argini 34.1 62 0.0021 17.9 5.1 40 57-96 13-56 (101)
113 1wex_A Hypothetical protein (r 33.8 68 0.0023 18.3 5.2 49 44-95 18-69 (104)
114 2rs2_A Musashi-1, RNA-binding 33.3 69 0.0024 18.2 5.8 51 45-98 29-88 (109)
115 2dgu_A Heterogeneous nuclear r 33.0 66 0.0023 17.9 6.0 49 45-96 15-64 (103)
116 2err_A Ataxin-2-binding protei 31.6 64 0.0022 18.4 3.6 40 57-96 42-88 (109)
117 2cjk_A Nuclear polyadenylated 31.5 89 0.003 19.0 4.9 46 57-102 100-154 (167)
118 2div_A TRNA selenocysteine ass 31.4 69 0.0023 17.6 4.5 49 45-96 13-71 (99)
119 2fy1_A RNA-binding motif prote 31.3 79 0.0027 18.3 4.5 49 45-96 11-67 (116)
120 1x4e_A RNA binding motif, sing 31.3 63 0.0021 17.1 4.3 48 45-95 9-65 (85)
121 2kxn_B Transformer-2 protein h 31.2 85 0.0029 18.6 6.9 51 43-96 48-107 (129)
122 2cq0_A Eukaryotic translation 31.2 59 0.002 18.1 3.4 49 45-96 19-76 (103)
123 1x4b_A Heterogeneous nuclear r 31.1 63 0.0022 18.5 3.6 41 57-97 40-89 (116)
124 1whw_A Hypothetical protein ri 31.0 70 0.0024 17.6 6.0 40 57-96 21-69 (99)
125 1rk8_A CG8781-PA, CG8781-PA pr 31.0 97 0.0033 19.2 5.1 49 45-96 76-133 (165)
126 2dgt_A RNA-binding protein 30; 30.9 68 0.0023 17.4 5.4 49 45-96 14-63 (92)
127 2jvr_A Nucleolar protein 3; RN 30.9 81 0.0028 18.3 5.5 49 45-96 32-86 (111)
128 2cqd_A RNA-binding region cont 30.8 78 0.0027 18.1 5.4 51 45-98 21-80 (116)
129 2ad9_A Polypyrimidine tract-bi 30.7 86 0.003 18.6 5.2 49 44-95 34-85 (119)
130 2cqc_A Arginine/serine-rich sp 30.5 69 0.0024 17.4 5.6 50 44-96 18-76 (95)
131 2dgv_A HnRNP M, heterogeneous 30.5 68 0.0023 17.3 5.9 49 45-96 12-67 (92)
132 3pgw_S U1-70K; protein-RNA com 30.4 1.1E+02 0.0036 22.9 5.4 49 45-96 106-163 (437)
133 2cph_A RNA binding motif prote 30.4 75 0.0026 17.7 7.3 49 45-96 19-77 (107)
134 2xnq_A Nuclear polyadenylated 30.4 73 0.0025 17.6 6.0 50 45-96 26-76 (97)
135 1x5s_A Cold-inducible RNA-bind 30.3 73 0.0025 17.6 5.3 49 45-96 16-73 (102)
136 2dnm_A SRP46 splicing factor; 30.3 74 0.0025 17.7 5.5 49 45-96 17-74 (103)
137 2x1f_A MRNA 3'-END-processing 30.3 72 0.0024 17.5 6.0 39 58-96 16-63 (96)
138 2dgs_A DAZ-associated protein 30.1 73 0.0025 17.5 6.4 55 45-102 14-77 (99)
139 1x5p_A Negative elongation fac 30.0 73 0.0025 17.5 4.7 39 58-96 27-68 (97)
140 3ue2_A Poly(U)-binding-splicin 29.8 83 0.0028 18.5 3.9 62 44-105 23-100 (118)
141 3s8s_A Histone-lysine N-methyl 29.8 83 0.0028 18.1 4.7 49 45-96 10-67 (110)
142 2khc_A Testis-specific RNP-typ 29.4 84 0.0029 18.0 4.1 39 58-96 54-101 (118)
143 2d9o_A DNAJ (HSP40) homolog, s 29.3 83 0.0028 17.9 5.8 39 58-96 31-73 (100)
144 2dgo_A Cytotoxic granule-assoc 29.3 83 0.0028 17.9 5.3 49 45-96 19-76 (115)
145 2ywk_A Putative RNA-binding pr 29.1 74 0.0025 17.3 4.8 49 45-96 20-76 (95)
146 1l3k_A Heterogeneous nuclear r 29.0 1E+02 0.0034 19.3 4.6 47 57-103 117-172 (196)
147 2cqi_A Nucleolysin TIAR; RNA r 28.9 79 0.0027 17.5 5.6 48 45-95 19-73 (103)
148 2cpj_A Non-POU domain-containi 28.9 62 0.0021 17.9 3.2 49 45-96 19-70 (99)
149 1x5u_A Splicing factor 3B subu 28.6 81 0.0028 17.5 6.7 49 45-96 19-76 (105)
150 3mdf_A Peptidyl-prolyl CIS-tra 28.5 71 0.0024 16.8 6.1 49 45-96 11-68 (85)
151 1p1t_A Cleavage stimulation fa 28.5 80 0.0027 17.5 4.0 40 57-96 21-69 (104)
152 3zzy_A Polypyrimidine tract-bi 28.1 1E+02 0.0035 18.7 4.1 49 45-96 32-85 (130)
153 3ulh_A THO complex subunit 4; 28.0 84 0.0029 17.5 4.9 49 45-96 33-89 (107)
154 3md3_A Nuclear and cytoplasmic 27.8 1E+02 0.0035 18.5 4.9 39 57-95 13-59 (166)
155 3tyt_A Heterogeneous nuclear r 27.8 1.3E+02 0.0044 19.6 5.7 49 45-95 8-60 (205)
156 1x4d_A Matrin 3; structural ge 27.6 91 0.0031 17.8 4.8 50 44-95 18-70 (102)
157 1wg5_A Heterogeneous nuclear r 27.0 89 0.003 17.5 5.1 57 45-104 19-84 (104)
158 3ucg_A Polyadenylate-binding p 26.8 79 0.0027 16.8 4.8 39 57-95 19-66 (89)
159 1u6f_A Tcubp1, RNA-binding pro 26.8 1E+02 0.0036 18.2 5.0 39 58-96 56-103 (139)
160 3s6e_A RNA-binding protein 39; 26.1 1E+02 0.0036 18.0 4.4 45 61-105 34-84 (114)
161 2xs2_A Deleted in azoospermia- 26.0 48 0.0017 18.4 2.4 39 57-95 22-68 (102)
162 1sjq_A Polypyrimidine tract-bi 25.5 1E+02 0.0036 17.8 5.4 49 44-95 19-70 (105)
163 1nu4_A U1A RNA binding domain; 25.5 89 0.003 17.0 5.7 36 61-96 29-70 (97)
164 2bz2_A Negative elongation fac 25.4 1.1E+02 0.0037 17.9 4.1 39 58-96 51-92 (121)
165 1x4g_A Nucleolysin TIAR; struc 24.7 1E+02 0.0035 17.3 6.0 49 45-96 29-80 (109)
166 2jvo_A Nucleolar protein 3; nu 24.6 1E+02 0.0036 17.5 5.0 40 57-96 44-84 (108)
167 2a3j_A U1 small nuclear ribonu 24.6 1.2E+02 0.004 18.1 5.3 37 60-96 49-91 (127)
168 2cqg_A TDP-43, TAR DNA-binding 23.9 1E+02 0.0035 17.1 4.9 49 45-96 19-76 (103)
169 2kn4_A Immunoglobulin G-bindin 23.5 1.3E+02 0.0045 18.2 6.7 40 57-96 83-131 (158)
170 3md1_A Nuclear and cytoplasmic 23.3 90 0.0031 16.3 4.6 39 58-96 15-62 (83)
171 3n9u_C Cleavage and polyadenyl 23.3 1.4E+02 0.0047 18.4 5.1 46 58-103 69-126 (156)
172 1h2v_Z 20 kDa nuclear CAP bind 23.2 1.3E+02 0.0046 18.2 5.3 49 45-96 43-100 (156)
173 3bs9_A Nucleolysin TIA-1 isofo 22.9 95 0.0032 16.4 5.3 40 57-96 19-67 (87)
174 1fxl_A Paraneoplastic encephal 22.7 1.3E+02 0.0045 18.0 5.2 40 57-96 15-63 (167)
175 2la4_A Nuclear and cytoplasmic 22.5 1.1E+02 0.0037 16.9 5.0 40 57-96 40-82 (101)
176 2do0_A HnRNP M, heterogeneous 22.5 1.1E+02 0.0039 17.2 4.7 50 44-96 18-75 (114)
177 2dis_A Unnamed protein product 21.9 1.1E+02 0.0039 17.0 5.8 49 45-96 12-71 (109)
178 2i2y_A Fusion protein consists 21.8 1.4E+02 0.0048 18.0 7.2 49 45-96 77-129 (150)
179 1x4a_A Splicing factor, argini 21.8 1.2E+02 0.004 17.0 6.1 49 45-96 26-80 (109)
180 2dgx_A KIAA0430 protein; RRM d 21.6 1.1E+02 0.0038 16.7 5.6 35 62-96 31-71 (96)
181 3fgx_A Rbstp2171; structural g 21.6 65 0.0022 19.1 2.2 16 61-76 10-25 (114)
182 2ghp_A U4/U6 snRNA-associated 21.4 1.9E+02 0.0065 19.6 5.1 50 45-97 45-101 (292)
183 2dgp_A Bruno-like 4, RNA bindi 21.2 1.2E+02 0.004 16.8 5.7 49 45-96 17-74 (106)
184 2d9p_A Polyadenylate-binding p 20.5 1.2E+02 0.0041 16.7 6.1 51 43-96 17-74 (103)
185 3ns6_A Eukaryotic translation 20.2 1.2E+02 0.0043 16.7 5.5 44 59-102 27-80 (100)
186 2a7o_A Huntingtin interacting 20.1 37 0.0013 20.1 0.9 17 57-73 88-104 (112)
No 1
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.93 E-value=2.7e-25 Score=168.42 Aligned_cols=144 Identities=18% Similarity=0.292 Sum_probs=122.4
Q ss_pred ccccCCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhc-CcccccCCCch
Q 041764 30 RVLAKRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTH-DLIFSGRPRSY 108 (175)
Q Consensus 30 ~~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~-~~~~~~~~~~~ 108 (175)
.+.+++.+|||+++|++||+..+ ..+++.++.+++++||+++++++|+.+.++++||+++++++.++ ...|.+++...
T Consensus 9 ~~~k~~~~PGP~~~PliGn~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~ 87 (485)
T 3nxu_A 9 GLFKKLGIPGPTPLPFLGNILSY-HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFG 87 (485)
T ss_dssp THHHHHTCCCCCCBTTTBTGGGG-GGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCS
T ss_pred hHHhhCCCCCCCCcCeecCcHHh-hcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCcccc
Confidence 34455679999999999999998 67788899999999999999999999999999999999999877 45565543221
Q ss_pred hH----H------H----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHHHHHHHh
Q 041764 109 AA----K------K----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQS--STKPIDLSRLTLLLSNNIVCRVA 172 (175)
Q Consensus 109 ~~----~------~----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~i~~~~ 172 (175)
.. . . ++||.+ ++.|+.++++.+.+.+.++++.+++.+.+. +++++|+.+++..+++|+++.++
T Consensus 88 ~~~~~~~~l~~~~g~~w~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~g~~~d~~~~~~~~~~dvi~~~~ 166 (485)
T 3nxu_A 88 PVGFMKSAISIAEDEEWKRLRSLL-SPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTS 166 (485)
T ss_dssp CCGGGGGSTTTCCHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHHHHHHH
T ss_pred cccccccCccccCCcHHHHHHhhc-ChhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHHHHHHH
Confidence 10 0 0 778888 999999999999999999999999999753 46789999999999999999999
Q ss_pred cCC
Q 041764 173 FGQ 175 (175)
Q Consensus 173 fG~ 175 (175)
||.
T Consensus 167 fG~ 169 (485)
T 3nxu_A 167 FGV 169 (485)
T ss_dssp HSC
T ss_pred cCC
Confidence 994
No 2
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.91 E-value=4.8e-24 Score=161.26 Aligned_cols=145 Identities=23% Similarity=0.348 Sum_probs=117.2
Q ss_pred ccccCCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchh
Q 041764 30 RVLAKRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYA 109 (175)
Q Consensus 30 ~~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~ 109 (175)
.+++.++||||+++|++||++++..++.+..+.+++++|||||++++|+.+.++++||++++++|.+++..|++++....
T Consensus 5 ~ss~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~ 84 (479)
T 3tbg_A 5 TSSKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPI 84 (479)
T ss_dssp ----CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGG
T ss_pred CCCCCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHH
Confidence 34555789999999999999988567888899999999999999999999999999999999999988777776654332
Q ss_pred HHH--------------------HhHhHHHhhccChhHHhh--HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 041764 110 AKK--------------------AVRKIVIMEILSSKRVQS--FQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNI 167 (175)
Q Consensus 110 ~~~--------------------~~Rr~~~~~~f~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 167 (175)
... ++|+.+ .+.|+...+.. +.+.+....+.+.+.+....++.+|+.+.+..+++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~g~~w~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (479)
T 3tbg_A 85 TQILGFGPRSQGVFLARYGPAWREQRRFS-VSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNV 163 (479)
T ss_dssp GGGGTCBTTBCCSTTCCSSHHHHHHHHHH-HHHHHHTTSTTCHHHHHHHHHHHHHHHHHHTTTTCCBCTHHHHHHHHHHH
T ss_pred HHHhccCCCCCceeeCCCCHHHHHHHHHH-HHHhcchhhhHHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Confidence 211 667777 88887776653 4566777777777777766678899999999999999
Q ss_pred HHHHhcCC
Q 041764 168 VCRVAFGQ 175 (175)
Q Consensus 168 i~~~~fG~ 175 (175)
++.++||.
T Consensus 164 ~~~~~fg~ 171 (479)
T 3tbg_A 164 IASLTCGR 171 (479)
T ss_dssp HHHHHHSC
T ss_pred HHHhhcCC
Confidence 99999984
No 3
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.91 E-value=7.7e-24 Score=160.91 Aligned_cols=144 Identities=21% Similarity=0.402 Sum_probs=117.1
Q ss_pred cccCCCCCCCCCCCccccccccCC-CCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchh
Q 041764 31 VLAKRLPPGPWKLPVLGNLHQLNG-DSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYA 109 (175)
Q Consensus 31 ~~~~~~~pgp~~~p~~G~~~~~~~-~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~ 109 (175)
++..+.||||+++|++||+..+.. +..+..+.+|+++||+|+++++|+.+.++++||+++++++.+++..|++++....
T Consensus 4 ~~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~ 83 (494)
T 3swz_A 4 KTGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMAT 83 (494)
T ss_dssp --------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHH
T ss_pred CCCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHH
Confidence 345567999999999999998743 3567889999999999999999999999999999999999998888887765432
Q ss_pred HHH------------------HhHhHHHhhccCh--hHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 041764 110 AKK------------------AVRKIVIMEILSS--KRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVC 169 (175)
Q Consensus 110 ~~~------------------~~Rr~~~~~~f~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~ 169 (175)
... .+||.+ .+.|+. ..+..+.+.+.++++.+++.+.+..++++|+.+.+..+++|+|+
T Consensus 84 ~~~~~~~~~gl~~~~~g~~wr~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~t~dvi~ 162 (494)
T 3swz_A 84 LDIASNNRKGIAFADSGAHWQLHRRLA-MATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVIS 162 (494)
T ss_dssp HHHHTTTTCSSSSSCSSHHHHHHHHHH-HHHTTTTSSSTTCHHHHHHHHHHHHHHHHHHTTTEEECCHHHHHHHHHHHHH
T ss_pred HHHhccCCCCeEeCCCCHHHHHHHHHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHH
Confidence 211 677777 888874 45677999999999999999987667789999999999999999
Q ss_pred HHhcCC
Q 041764 170 RVAFGQ 175 (175)
Q Consensus 170 ~~~fG~ 175 (175)
.++||.
T Consensus 163 ~~~fG~ 168 (494)
T 3swz_A 163 LICFNT 168 (494)
T ss_dssp HHHHSC
T ss_pred HHHcCC
Confidence 999994
No 4
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.91 E-value=8.2e-24 Score=160.98 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=114.4
Q ss_pred ccCCCCCCCCCCCccccccccCC---CCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCch
Q 041764 32 LAKRLPPGPWKLPVLGNLHQLNG---DSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY 108 (175)
Q Consensus 32 ~~~~~~pgp~~~p~~G~~~~~~~---~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~ 108 (175)
.+.+.||||+++|++||+.++.. ...+..+.+++++||+++++++|+.+.++++||+++++++.++ .|++++...
T Consensus 42 ~~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~~--~~~~r~~~~ 119 (503)
T 3s79_A 42 EGTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKHN--HYSSRFGSK 119 (503)
T ss_dssp ---CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHSG--GGCCCCCCH
T ss_pred hccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhcC--CCCCcchhh
Confidence 34578999999999999988621 2345678899999999999999999999999999999999643 444443221
Q ss_pred hH-----------------HH--HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHHH
Q 041764 109 AA-----------------KK--AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQS--STKPIDLSRLTLLLSNNI 167 (175)
Q Consensus 109 ~~-----------------~~--~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~ 167 (175)
.. .. ++||.+ ++.|+..+++.+.+.+.++++++++.|.+. .++++|+.+++..+++|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~-~~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~vdl~~~~~~~~~~v 198 (503)
T 3s79_A 120 LGLQCIGMHEKGIIFNNNPELWKTTRPFF-MKALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDT 198 (503)
T ss_dssp HHHHHHTCTTSSSTTCCCHHHHHHHHHHH-HHHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCTTSCBCHHHHHHHHHHHH
T ss_pred hhhhhhccCCCceeeCCCccHHHHHHHhh-hHhhChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHHHHH
Confidence 11 00 778888 899999999999999999999999988763 456799999999999999
Q ss_pred HHHHhcCC
Q 041764 168 VCRVAFGQ 175 (175)
Q Consensus 168 i~~~~fG~ 175 (175)
++.++||.
T Consensus 199 i~~~~fG~ 206 (503)
T 3s79_A 199 SNTLFLRI 206 (503)
T ss_dssp HHHHHTCC
T ss_pred HHHHHcCc
Confidence 99999994
No 5
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.90 E-value=2.2e-23 Score=157.55 Aligned_cols=144 Identities=25% Similarity=0.405 Sum_probs=117.2
Q ss_pred cccCCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchhH
Q 041764 31 VLAKRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYAA 110 (175)
Q Consensus 31 ~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~ 110 (175)
+.+.+.||||+++|++||+.++...+++..+.+++++||+++++++|+.+.++++||+++++++.+++..|++++.....
T Consensus 6 ~~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~ 85 (476)
T 3e6i_A 6 SSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAF 85 (476)
T ss_dssp ----CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGG
T ss_pred cCCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchh
Confidence 44567899999999999999985567889999999999999999999999999999999999999887777765432211
Q ss_pred H-----H----------HhHhHHHhhccChhHH--hhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhc
Q 041764 111 K-----K----------AVRKIVIMEILSSKRV--QSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVAF 173 (175)
Q Consensus 111 ~-----~----------~~Rr~~~~~~f~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~f 173 (175)
. . ++||.+ .+.|+...+ ..+.+.+.++++.+++.+.+..++++|+.+++..+++|+|+.++|
T Consensus 86 ~~~~~~~l~~~~g~~w~~~Rr~~-~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~dvi~~~~f 164 (476)
T 3e6i_A 86 HAHRDRGIIFNNGPTWKDIRRFS-LTTLRNYGMGKQGNESRIQREAHFLLEALRKTQGQPFDPTFLIGCAPCNVIADILF 164 (476)
T ss_dssp GGGTTSSSTTCCSTTHHHHHHHH-HHHHHHTC-CCSHHHHHHHHHHHHHHHHHHTTTTSCBCTHHHHTHHHHHHHHHHHH
T ss_pred heecCCCEEecCCcHHHHHHHHH-HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCcChHHHHHHHHHHHHHHHHc
Confidence 1 0 778766 666665443 346789999999999999876677899999999999999999999
Q ss_pred CC
Q 041764 174 GQ 175 (175)
Q Consensus 174 G~ 175 (175)
|.
T Consensus 165 G~ 166 (476)
T 3e6i_A 165 RK 166 (476)
T ss_dssp SC
T ss_pred CC
Confidence 95
No 6
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.90 E-value=3.6e-23 Score=156.57 Aligned_cols=147 Identities=19% Similarity=0.250 Sum_probs=119.7
Q ss_pred hhcccccCCCCCCCCCCCccccccccC----CCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccc
Q 041764 27 EKTRVLAKRLPPGPWKLPVLGNLHQLN----GDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFS 102 (175)
Q Consensus 27 ~~~~~~~~~~~pgp~~~p~~G~~~~~~----~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~ 102 (175)
++...++.+.+|||+++|++||+..+. .++++..+.+++++||+|+++++|+.+.++++||+++++|+.++ ..|.
T Consensus 16 ~~~~~~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~ 94 (482)
T 3k9v_A 16 TDGETRNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHP 94 (482)
T ss_dssp ---CCEEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSC
T ss_pred cccccCCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCC
Confidence 334456777899999999999988763 23567889999999999999999999999999999999999874 4566
Q ss_pred cCCCchhH---H-------------H----HhHhHHHhhcc-ChhHHhhHHHHHHHHHHHHHHHHHhc---CCCCcchHH
Q 041764 103 GRPRSYAA---K-------------K----AVRKIVIMEIL-SSKRVQSFQAVRYEEVMLVLQFIAQS---STKPIDLSR 158 (175)
Q Consensus 103 ~~~~~~~~---~-------------~----~~Rr~~~~~~f-~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~ 158 (175)
+++..... . . ++||.+ .+.| +.+.++.+.+.+.++++.+++.+.+. .++++|+.+
T Consensus 95 ~r~~~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~-~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~~~ 173 (482)
T 3k9v_A 95 QRLEIKPWKAYRDHRNEAYGLMILEGQEWQRVRSAF-QKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYS 173 (482)
T ss_dssp CCCCCHHHHHHHHHHTCCCCTTTCCHHHHHHHHHHH-HHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTHHH
T ss_pred CCCCchHHHHHHHhcCCCCCceeCCCchHHHHHHHh-hHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Confidence 55432210 0 0 778888 7765 78889999999999999999999864 356899999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 041764 159 LTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 159 ~~~~~~~~~i~~~~fG~ 175 (175)
++..+++|+++.++||+
T Consensus 174 ~~~~~t~dvi~~~~fG~ 190 (482)
T 3k9v_A 174 ELNKWSFESICLVLYEK 190 (482)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHccc
Confidence 99999999999999984
No 7
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.3e-23 Score=158.61 Aligned_cols=143 Identities=22% Similarity=0.436 Sum_probs=100.2
Q ss_pred cccCCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchhH
Q 041764 31 VLAKRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYAA 110 (175)
Q Consensus 31 ~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~ 110 (175)
+.+.+.||||+++|++||+..+ .++++..+.+++++||+|+++++|+.+.++++||+++++++.+++..|.+++.....
T Consensus 5 ~~~~~~pPgP~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~ 83 (507)
T 3pm0_A 5 TSSKGKPPGPFAWPLIGNAAAV-GQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASF 83 (507)
T ss_dssp ------------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHH
T ss_pred cCCCCCCcCCCCCCeeCchhhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHH
Confidence 4456689999999999999988 678899999999999999999999999999999999999998887778766544321
Q ss_pred HH-----------------HhHhHHHhhccChhHH------hhHHHHHHHHHHHHHHHHHhc--CCCCcchHHHHHHHHH
Q 041764 111 KK-----------------AVRKIVIMEILSSKRV------QSFQAVRYEEVMLVLQFIAQS--STKPIDLSRLTLLLSN 165 (175)
Q Consensus 111 ~~-----------------~~Rr~~~~~~f~~~~l------~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~ 165 (175)
.. ++||.+ .+.|+.... +.+.+.+.++++.+++.+.+. +++++|+.+++.++++
T Consensus 84 ~~~~~g~~l~~~~~g~~w~~~R~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~ 162 (507)
T 3pm0_A 84 RVVSGGRSMAFGHYSEHWKVQRRAA-HSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVA 162 (507)
T ss_dssp HHGGGGTCSSSSCSSHHHHHHHHHH-HHHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGGCCBCCHHHHHHHHH
T ss_pred HhhcCCCceEECCCChHHHHHHHHH-HHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccCCCcChHHHHHHHHH
Confidence 11 678877 776654333 338899999999999999864 3578999999999999
Q ss_pred HHHHHHhcCC
Q 041764 166 NIVCRVAFGQ 175 (175)
Q Consensus 166 ~~i~~~~fG~ 175 (175)
|+++.++||.
T Consensus 163 dvi~~~~fG~ 172 (507)
T 3pm0_A 163 NVMSAVCFGC 172 (507)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHccc
Confidence 9999999995
No 8
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.90 E-value=7.1e-23 Score=155.05 Aligned_cols=141 Identities=27% Similarity=0.442 Sum_probs=119.2
Q ss_pred CCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchhHH--
Q 041764 34 KRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYAAK-- 111 (175)
Q Consensus 34 ~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~-- 111 (175)
.+.||||+++|++||+..+..++++..+.+++++||+|+++++++.+.++++||+++++|+.++...|++++......
T Consensus 9 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~ 88 (476)
T 2fdv_A 9 GKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDWV 88 (476)
T ss_dssp CBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHHHH
T ss_pred CCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHhhh
Confidence 357899999999999998745677889999999999999999999999999999999999977666676554322111
Q ss_pred ----------H----HhHhHHHhhccChhHH--hhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcCC
Q 041764 112 ----------K----AVRKIVIMEILSSKRV--QSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 112 ----------~----~~Rr~~~~~~f~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~ 175 (175)
. ++||.+ ++.|+...+ +.+.+.+.++++.+++.|.+..++++|+.+++..+++|+++.++||.
T Consensus 89 ~~~~~l~~~~g~~~~~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~vi~~~~fG~ 167 (476)
T 2fdv_A 89 FKGYGVVFSNGERAKQLRRFS-IATLRDFGVGKRGIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGD 167 (476)
T ss_dssp HTTCSSSSCCHHHHHHHHHHH-HHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHTTTCCBCCHHHHHHHHHHHHHHHHHSS
T ss_pred cCCCCeEecCchHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHHHHHHHcCC
Confidence 0 678877 999988766 67899999999999999987656789999999999999999999994
No 9
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.90 E-value=8.9e-24 Score=160.54 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=112.0
Q ss_pred cccccCCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCch
Q 041764 29 TRVLAKRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY 108 (175)
Q Consensus 29 ~~~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~ 108 (175)
+.+++.+.||||++ +.++..++++..+.+++++||||+++++|+.+.++++||+++++++.+++..|++++...
T Consensus 23 ~~~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~ 96 (496)
T 3qz1_A 23 WKLRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIP 96 (496)
T ss_dssp ------CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCT
T ss_pred hhccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcc
Confidence 34455678999976 444446788999999999999999999999999999999999999988876776554321
Q ss_pred h----------------HHH--HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH
Q 041764 109 A----------------AKK--AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCR 170 (175)
Q Consensus 109 ~----------------~~~--~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~ 170 (175)
. ... ++||.+ ++.|+.+.++.+.+.+.++++++++.+.+..++++|+.+++..+++|+|+.
T Consensus 97 ~~~~~~~~~~~l~~~~~g~~w~~~Rr~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~dvi~~ 175 (496)
T 3qz1_A 97 SYKLVSQRCQDISLGDYSLLWKAHKKLT-RSALLLGTRSSMEPWVDQLTQEFCERMRVQAGAPVTIQKEFSLLTCSIICY 175 (496)
T ss_dssp TTTTSCTTCCCSSSSCCSHHHHHHHHHH-HHHHHC--CCCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHTHHHHHHTTT
T ss_pred hHHHhcCCCCceEECCCCHHHHHHHHHH-HHHHhhccHhhHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHH
Confidence 1 001 678887 999998777889999999999999999876577899999999999999999
Q ss_pred HhcCC
Q 041764 171 VAFGQ 175 (175)
Q Consensus 171 ~~fG~ 175 (175)
++||.
T Consensus 176 ~~fG~ 180 (496)
T 3qz1_A 176 LTFGN 180 (496)
T ss_dssp TSTTC
T ss_pred HhcCC
Confidence 99995
No 10
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.89 E-value=9.7e-23 Score=154.31 Aligned_cols=141 Identities=30% Similarity=0.489 Sum_probs=117.3
Q ss_pred CCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchhH---
Q 041764 34 KRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYAA--- 110 (175)
Q Consensus 34 ~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~--- 110 (175)
.+.||||+++|++||+..+..++++..+.+++++||+++++++++.+.++++||+++++|+.++...|.+++.....
T Consensus 9 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~ 88 (476)
T 1po5_A 9 GKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPI 88 (476)
T ss_dssp CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCSC
T ss_pred CCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHhh
Confidence 35789999999999998874567889999999999999999999999999999999999997765556543321100
Q ss_pred ---------HH----HhHhHHHhhccChh--HHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcCC
Q 041764 111 ---------KK----AVRKIVIMEILSSK--RVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 111 ---------~~----~~Rr~~~~~~f~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~ 175 (175)
.. ++||.+ .+.|+.. .++.+.+.+.++++.+++.|.+..++++|+.+.+..+++|+|++++||.
T Consensus 89 ~~~~~l~~~~g~~w~~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~~vi~~~~fG~ 167 (476)
T 1po5_A 89 FQGYGVIFANGERWRALRRFS-LATMRDFGMGKRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGK 167 (476)
T ss_dssp CSSCCCCCSSHHHHHHHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCBCCHHHHHHHHHHHHHHHHHSS
T ss_pred cCCCceEecCCcHHHHHHHHH-HHHHHHhCCChhHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHcCC
Confidence 00 778877 8888877 4567899999999999999987656789999999999999999999994
No 11
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.88 E-value=1.3e-22 Score=153.66 Aligned_cols=141 Identities=27% Similarity=0.425 Sum_probs=111.1
Q ss_pred CCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCch----h
Q 041764 34 KRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY----A 109 (175)
Q Consensus 34 ~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~----~ 109 (175)
.+.||||+++|++||+..+..++++..+.+++++||+|+++++++.+.++++||+++++++.++...|.+++... .
T Consensus 10 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~~ 89 (477)
T 1r9o_A 10 GKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERA 89 (477)
T ss_dssp CBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCTT
T ss_pred CCCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhhc
Confidence 357999999999999988733567888999999999999999998899999999999999976655565433210 0
Q ss_pred --------HHH----HhHhHHHhhccChh--HHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcCC
Q 041764 110 --------AKK----AVRKIVIMEILSSK--RVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 110 --------~~~----~~Rr~~~~~~f~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~ 175 (175)
... ++||.+ .+.|+.. .++.+.+.+.++++.+++.|.+..++++|+.+.+..+++|+|++++||.
T Consensus 90 ~~~~~l~~~~g~~w~~~Rr~~-~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~vi~~~~fG~ 168 (477)
T 1r9o_A 90 NRGFGIVFSNGKKWKEIRRFS-LMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHK 168 (477)
T ss_dssp TCTTSSTTCCHHHHHHHHHHH-HHHHTTSSSCSSCHHHHHHHHHHHHHHHHHTTTTSCBCTHHHHHHHHHHHHHHHHHSC
T ss_pred cCCCceEecCChHHHHHHHHH-HHHHHHhCCChHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHHHHHHHccC
Confidence 001 778877 8888887 4567899999999999999987556789999999999999999999994
No 12
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.88 E-value=3.8e-22 Score=149.95 Aligned_cols=141 Identities=17% Similarity=0.205 Sum_probs=115.5
Q ss_pred cccccCCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCch
Q 041764 29 TRVLAKRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY 108 (175)
Q Consensus 29 ~~~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~ 108 (175)
.+.++.+.||||+++|++||+..+ ..+++ ++.+++++||+++++++++.+.++++||+++++++.+++..|+.+....
T Consensus 6 ~~~~~~~~pPgp~~~P~iG~~~~~-~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~ 83 (444)
T 2ve3_A 6 TNLNSLPIPPGDFGLPWLGETLNF-LNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPLS 83 (444)
T ss_dssp ---CCCCCCCCCCCBTTTBTHHHH-HHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCHH
T ss_pred CCCCCCCCCCCCCCCCccccHHHH-hcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhHH
Confidence 345566789999999999999887 44566 7889999999999999888889999999999999987755554321100
Q ss_pred -----------hHHH----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhc
Q 041764 109 -----------AAKK----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVAF 173 (175)
Q Consensus 109 -----------~~~~----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~f 173 (175)
.... ++||.+ ++.|+.++++.+.+.+.++++++++.|.. ++++|+.+++..+++|++++++|
T Consensus 84 ~~~~~g~~~l~~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~--~~~vd~~~~~~~~~~~vi~~~~f 160 (444)
T 2ve3_A 84 TRILLGPNALATQMGEIHRSRRKIL-YQAFLPRTLDSYLPKMDGIVQGYLEQWGK--ANEVIWYPQLRRMTFDVAATLFM 160 (444)
T ss_dssp HHHHHCTTSGGGCCHHHHHHHHHHH-HGGGCHHHHHTTHHHHHHHHHHHHHHHHH--SSEEEHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCccccccCCchHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhcC--CCcEeHHHHHHHHHHHHHHHHHc
Confidence 0000 677877 99999999999999999999999999975 46799999999999999999999
Q ss_pred C
Q 041764 174 G 174 (175)
Q Consensus 174 G 174 (175)
|
T Consensus 161 G 161 (444)
T 2ve3_A 161 G 161 (444)
T ss_dssp C
T ss_pred C
Confidence 8
No 13
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.88 E-value=3.8e-22 Score=151.32 Aligned_cols=143 Identities=29% Similarity=0.457 Sum_probs=116.6
Q ss_pred ccCCCCCCCCCCCccccccccCCCC--CcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchh
Q 041764 32 LAKRLPPGPWKLPVLGNLHQLNGDS--PHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYA 109 (175)
Q Consensus 32 ~~~~~~pgp~~~p~~G~~~~~~~~~--~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~ 109 (175)
.+.+.||||+++|++||+..+.... ++..+.+++++||+|+++++++.+.++++||+++++++.+++..|++++....
T Consensus 9 ~~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~ 88 (481)
T 3czh_A 9 RPMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPL 88 (481)
T ss_dssp ---CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHH
T ss_pred CCCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHH
Confidence 4456799999999999998773233 78889999999999999999999999999999999999887666766543211
Q ss_pred HH-------------H----HhHhHHHhhccChhHH--hhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH
Q 041764 110 AK-------------K----AVRKIVIMEILSSKRV--QSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCR 170 (175)
Q Consensus 110 ~~-------------~----~~Rr~~~~~~f~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~ 170 (175)
.. . ++||.+ ++.|+...+ ..+.+.+.++++.+++.+.+..++++|+.+.+.++++|+++.
T Consensus 89 ~~~~~~~~~~~~~~~g~~w~~~R~~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~~vi~~ 167 (481)
T 3czh_A 89 FMKMTKMGGLLNSRYGRGWVDHRRLA-VNSFRYFGYGQKSFESKILEETKFFNDAIETYKGRPFDFKQLITNAVSNITNL 167 (481)
T ss_dssp HHHHHTTCSSTTCCSSHHHHHHHHHH-HHHHHHTTTTSTTHHHHHHHHHHHHHHHHHTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCeEeCCCChHHHHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHH
Confidence 00 0 678877 899886544 578999999999999999876566899999999999999999
Q ss_pred HhcCC
Q 041764 171 VAFGQ 175 (175)
Q Consensus 171 ~~fG~ 175 (175)
++||.
T Consensus 168 ~~fG~ 172 (481)
T 3czh_A 168 IIFGE 172 (481)
T ss_dssp HHHSS
T ss_pred HHcCC
Confidence 99994
No 14
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.87 E-value=8.5e-22 Score=149.85 Aligned_cols=142 Identities=26% Similarity=0.500 Sum_probs=114.0
Q ss_pred ccCCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCch---
Q 041764 32 LAKRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY--- 108 (175)
Q Consensus 32 ~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~--- 108 (175)
++.+.+|||+++|++||+..+ .++++..+.+++++||||+++++|+.+.++++||+++++++.+++..|++++...
T Consensus 13 ~~lp~~PgP~~~p~~G~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~ 91 (495)
T 2hi4_A 13 KGLKSPPEPWGWPLLGHVLTL-GKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTST 91 (495)
T ss_dssp TTCBCCCCCCCBTTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHH
T ss_pred CCCCCCCCCCCCcceeeHHhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHH
Confidence 334445999999999999887 6778889999999999999999999999999999999999987655565443211
Q ss_pred ---------hH--HH----HhHhHHHhhccC---hhHH---h---hHHHHHHHHHHHHHHHHHh--cCCCCcchHHHHHH
Q 041764 109 ---------AA--KK----AVRKIVIMEILS---SKRV---Q---SFQAVRYEEVMLVLQFIAQ--SSTKPIDLSRLTLL 162 (175)
Q Consensus 109 ---------~~--~~----~~Rr~~~~~~f~---~~~l---~---~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~ 162 (175)
.. .. ++||.+ ++.|+ ..+. + .+.+.+.++++.+++.|.+ .+++++|+.+.+..
T Consensus 92 ~~~~~~~l~~~~~~g~~w~~~Rr~~-~~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~ 170 (495)
T 2hi4_A 92 LITDGQSLTFSTDSGPVWAARRRLA-QNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQVVV 170 (495)
T ss_dssp TSTTSCCTTTSSCCSHHHHHHHHHH-HHHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTTSCBCHHHHHHH
T ss_pred HhcCCCCEEEcCCCChHHHHHHHHH-HHHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHH
Confidence 11 01 677777 88754 3332 2 6889999999999999976 45678999999999
Q ss_pred HHHHHHHHHhcCC
Q 041764 163 LSNNIVCRVAFGQ 175 (175)
Q Consensus 163 ~~~~~i~~~~fG~ 175 (175)
+++|+|+.++||.
T Consensus 171 ~~~dvi~~~~fG~ 183 (495)
T 2hi4_A 171 SVANVIGAMCFGQ 183 (495)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999984
No 15
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.87 E-value=1.4e-22 Score=152.92 Aligned_cols=137 Identities=15% Similarity=0.194 Sum_probs=117.3
Q ss_pred CCCCCCCC-CCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchhHHH-
Q 041764 35 RLPPGPWK-LPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYAAKK- 112 (175)
Q Consensus 35 ~~~pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~- 112 (175)
+.||+|++ +|++||++++ .++++.++.++++|||||+++++++.+.++++||+++++++.+++..|+.++.......
T Consensus 11 ~~PP~~~~~lP~iG~~~~~-~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~ 89 (461)
T 3ld6_A 11 KSPPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTP 89 (461)
T ss_dssp CCCCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHH
T ss_pred CCCCCCCCCcCeeeeHHHh-hhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhc
Confidence 45777764 8999999998 78899999999999999999999999999999999999999988777765443221111
Q ss_pred ----------------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcCC
Q 041764 113 ----------------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 ----------------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~ 175 (175)
++|+.+ ++.|+.+.++.+.+.+.++++++++.|.+. +.+|+.+.+..+++++++.++||.
T Consensus 90 ~~g~~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~fG~ 165 (461)
T 3ld6_A 90 VFGKGVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGES--GEKNVFEALSELIILTASHCLHGK 165 (461)
T ss_dssp HHCTTSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCSE--EEEEHHHHHHHHHHHHHHHHHTCH
T ss_pred cCCCccccCCCcHHHHHHHHhc-cccccHHHHhhhhHHHHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHHHHHHcCc
Confidence 667777 999999999999999999999999888763 568999999999999999999983
No 16
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.87 E-value=2.9e-22 Score=150.38 Aligned_cols=139 Identities=19% Similarity=0.245 Sum_probs=117.9
Q ss_pred CCCCCCCCC-CCccccccccCCCCCcHHHHHHHHhhC-CeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchhHH
Q 041764 34 KRLPPGPWK-LPVLGNLHQLNGDSPHVSLQHLSNDYG-PLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYAAK 111 (175)
Q Consensus 34 ~~~~pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~~yg-~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 111 (175)
.+.||||++ +|++||+..+ .++++.++.+++++|| +++++++++.+.++++||+++++++.+++..|++++......
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~ 80 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQF-GKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMV 80 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHH-HHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGH
T ss_pred CCCCCCCCCCcchhccHHHH-ccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHH
Confidence 467888665 9999999988 6788899999999999 999999999999999999999999988777676654322111
Q ss_pred ------------H----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHH-HHHhcCCCCcchHHHHHHHHHHHHHHHhcC
Q 041764 112 ------------K----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQ-FIAQSSTKPIDLSRLTLLLSNNIVCRVAFG 174 (175)
Q Consensus 112 ------------~----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG 174 (175)
. ++||.+ ++.|+.++++.+.+.+.++++++++ .|.+ .++++|+.+++..+++|+++.++||
T Consensus 81 ~~~g~~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~-~~~~vd~~~~~~~~~~~~i~~~~fG 158 (450)
T 3gw9_A 81 PVFGEGVAYAAPYPRMREQLNFL-AEELTIAKFQNFVPAIQHEVRKFMAANWDK-DEGEINLLEDCSTMIINTACQCLFG 158 (450)
T ss_dssp HHHCTTSGGGSCHHHHHHHHHHH-HHTTSGGGCTTHHHHHHHHHHHHHHHHSCS-SEEEEEHHHHHHHHHHHHHHHHHSC
T ss_pred HHhcCCcccCCCcHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcccHHHHHHHHHHHHHHHHHcC
Confidence 0 667777 9999999999999999999999999 6653 2457999999999999999999998
Q ss_pred C
Q 041764 175 Q 175 (175)
Q Consensus 175 ~ 175 (175)
.
T Consensus 159 ~ 159 (450)
T 3gw9_A 159 E 159 (450)
T ss_dssp H
T ss_pred c
Confidence 3
No 17
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.85 E-value=2.2e-21 Score=146.20 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=108.3
Q ss_pred CCCCC-CCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchhH---
Q 041764 35 RLPPG-PWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYAA--- 110 (175)
Q Consensus 35 ~~~pg-p~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~--- 110 (175)
+.||| |+++|++||+..+ ..+++..+.+++++||+++++++++.+.++++||+++++++.+++..|++++.....
T Consensus 4 ~~PPg~p~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 82 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEF-RTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPI 82 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHH
T ss_pred CCCCCCCCCCCCccCHHHH-hhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhh
Confidence 56887 7789999999988 678889999999999999999999999999999999999998766556554322111
Q ss_pred -------HH----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcCC
Q 041764 111 -------KK----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 111 -------~~----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~ 175 (175)
.. ++|+.+ ++.|+.++++.+.+.+.++++++++.|.+ ++++|+.+++..+++|+++.++||.
T Consensus 83 ~g~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~~~~--~~~vd~~~~~~~~~~~vi~~~~fG~ 155 (455)
T 2cib_A 83 FGEGVVFDASPERRKEMLH-NAALRGEQMKGHAATIEDQVRRMIADWGE--AGEIDLLDFFAELTIYTSSACLIGK 155 (455)
T ss_dssp HC---------------------CCHHHHHHHHHHHHHHHHHHHTTCCS--EEEEEHHHHHHHHHHHHHHHHHTCH
T ss_pred cCCccccCcHHHHHHHhhh-ccccCHHHHHHHHHHHHHHHHHHHHHhCC--CCcEeHHHHHHHHHHHHHHHHHcCC
Confidence 01 667777 99999999999999999999999998764 3569999999999999999999983
No 18
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.85 E-value=1.2e-21 Score=147.63 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=116.3
Q ss_pred cccCCCCCC-CCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchh
Q 041764 31 VLAKRLPPG-PWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYA 109 (175)
Q Consensus 31 ~~~~~~~pg-p~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~ 109 (175)
..+.+.||| |+++|++||+..+ ..+++.++.+++++||+|+++++++.+.+++++|+.+++++.++...+..++....
T Consensus 7 ~~~~~~PPg~P~~lP~iG~l~~~-~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~ 85 (461)
T 3i3k_A 7 PAGVKSPPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSR 85 (461)
T ss_dssp ---CCCCCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHH
T ss_pred CCCCCCCCCCCCCCCccccHHhh-ccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHH
Confidence 345568999 8899999999988 67889999999999999999999999999999999999999877654443211110
Q ss_pred ---------------HHH--HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHh
Q 041764 110 ---------------AKK--AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVA 172 (175)
Q Consensus 110 ---------------~~~--~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~ 172 (175)
... ++||.+ .+.|+.+.++.+.+.+.++++++++.|.+. +.+|+.+.+..+++++++.++
T Consensus 86 ~~~~~~g~g~~~~~~g~~w~~~Rr~~-~~~f~~~~l~~~~~~~~~~~~~ll~~l~~~--~~~dl~~~~~~~~~~~~~~~~ 162 (461)
T 3i3k_A 86 LTTPVFGKGVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGES--GEKNVFEALSELIILTASHCL 162 (461)
T ss_dssp HHHHHHCTTSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCSE--EEEEHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcCCeeeeCCCcHHHHHHHHHH-hhhhCHHHHHHHHHHHHHHHHHHHHHhhhc--CCcCHHHHHHHHHHHHHHHHH
Confidence 001 778887 899999999999999999999999988753 458999999999999999999
Q ss_pred cC
Q 041764 173 FG 174 (175)
Q Consensus 173 fG 174 (175)
||
T Consensus 163 ~G 164 (461)
T 3i3k_A 163 HG 164 (461)
T ss_dssp TC
T ss_pred cc
Confidence 98
No 19
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.85 E-value=2.4e-20 Score=141.11 Aligned_cols=138 Identities=17% Similarity=0.253 Sum_probs=114.3
Q ss_pred CCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCC--------
Q 041764 35 RLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPR-------- 106 (175)
Q Consensus 35 ~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~-------- 106 (175)
+.+|||+++|++||+.++..++++..+.+++++||||+++++++.+.++++||+++++++.++ .|.+.+.
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~~--~f~~~~~~~~~~~~~ 80 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDES--RFDKNLSQALKFVRD 80 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTT--TEEECCCHHHHHHHH
T ss_pred CCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhhc--CcCcCchhHHHHHHH
Confidence 458999999999999988445778888999999999999999999999999999999999642 2322110
Q ss_pred -----chhH--HH----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHhcC
Q 041764 107 -----SYAA--KK----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQS-STKPIDLSRLTLLLSNNIVCRVAFG 174 (175)
Q Consensus 107 -----~~~~--~~----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~i~~~~fG 174 (175)
.... .. ++||.+ ++.|+.++++.+.+.+.++++++++.|.+. .++++|+.+++..+++|+|+.++||
T Consensus 81 ~~~~~l~~~~~~g~~w~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~~vi~~~~fG 159 (470)
T 2ij2_A 81 FAGDGLFTSWTHEKNWKKAHNIL-LPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFN 159 (470)
T ss_dssp HHTTSGGGSCTTSHHHHHHHHHH-GGGGSTTTHHHHHHHHHHHHHHHHHHHHTCCTTCCEEHHHHHHHHHHHHHHHHHHS
T ss_pred hcCCceEEcCCCchHHHHHHHHh-ccccCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEHHHHHHHHHHHHHHHHHcC
Confidence 0000 11 678887 999999999999999999999999999864 3567999999999999999999998
Q ss_pred C
Q 041764 175 Q 175 (175)
Q Consensus 175 ~ 175 (175)
.
T Consensus 160 ~ 160 (470)
T 2ij2_A 160 Y 160 (470)
T ss_dssp C
T ss_pred C
Confidence 4
No 20
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.85 E-value=6.3e-21 Score=144.56 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=115.0
Q ss_pred ccccCCCCCCCCCCCccccccccC----CCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCC
Q 041764 30 RVLAKRLPPGPWKLPVLGNLHQLN----GDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRP 105 (175)
Q Consensus 30 ~~~~~~~~pgp~~~p~~G~~~~~~----~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~ 105 (175)
..++.+.+|||+..++. +++.+. ...++..+.+++++||||+++++|+.+.++++||+++++++.+++ .|.+++
T Consensus 4 ~~~pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~-~f~~r~ 81 (487)
T 3n9y_A 4 SPRPFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEG-PNPERF 81 (487)
T ss_dssp CCBCGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCC-SSCCCC
T ss_pred CCCCHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCC-CCCCCC
Confidence 44566779999988765 655542 135677889999999999999999999999999999999997664 566554
Q ss_pred CchhHH----------------H----HhHhHHHhh-ccChhHHhhHHHHHHHHHHHHHHHHHhc------CCCCcchHH
Q 041764 106 RSYAAK----------------K----AVRKIVIME-ILSSKRVQSFQAVRYEEVMLVLQFIAQS------STKPIDLSR 158 (175)
Q Consensus 106 ~~~~~~----------------~----~~Rr~~~~~-~f~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~d~~~ 158 (175)
...... . ++||.+ ++ .|+.++++.+.+.++++++++++.|.+. .++++|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~l-~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~ 160 (487)
T 3n9y_A 82 LIPPWVAYHQYYQRPIGVLLKKSAAWKKDRVAL-NQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISD 160 (487)
T ss_dssp CCHHHHHHHHHTTCCCCGGGCCHHHHHHHHHHH-HHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHH
T ss_pred CCcHHHHHHHHccccCCCccCCcHHHHHHHHhc-CcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHH
Confidence 332110 0 778887 77 5999999999999999999999999752 234799999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 041764 159 LTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 159 ~~~~~~~~~i~~~~fG~ 175 (175)
++..+++|+++.++||.
T Consensus 161 ~~~~~t~dvi~~~~fG~ 177 (487)
T 3n9y_A 161 DLFRFAFESITNVIFGE 177 (487)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999994
No 21
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.83 E-value=1e-20 Score=142.97 Aligned_cols=135 Identities=13% Similarity=0.233 Sum_probs=111.2
Q ss_pred CCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCccc-ccCCCchh---
Q 041764 34 KRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIF-SGRPRSYA--- 109 (175)
Q Consensus 34 ~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~-~~~~~~~~--- 109 (175)
...||||+++|++||+..+ ..+++.++.++++ ||||+++++++.+.++++||+++++++.++ .| .+.+....
T Consensus 22 ~eppPgP~~~P~iG~~~~~-~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~ 97 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRL-ARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEG 97 (467)
T ss_dssp CBCCEECCCCSTTHHHHHH-HHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC------------
T ss_pred CCCCCCCCCCCcccchHHh-ccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHH
Confidence 4568899999999999988 6788889999988 999999999999999999999999999876 34 22211100
Q ss_pred --H-HH----------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcCC
Q 041764 110 --A-KK----------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 110 --~-~~----------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~ 175 (175)
. .. ++||.+ ++.|+.++++.+.+.+.++++++++.|.+ ++++|+.+.+..+++++++.++||.
T Consensus 98 ~~g~~~l~~~dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~vi~~~~~g~ 173 (467)
T 3dbg_A 98 LLGKEGVATANGPLHRRQRRTI-QPAFRLDAIPAYGPIMEEEAHALTERWQP--GKTVDATSESFRVAVRVAARCLLRG 173 (467)
T ss_dssp ------------------CGGG-HHHHSTTTSTTTHHHHHHHHHHHHHHSCT--TSCEEHHHHHHHHHHHHHHHHHSCS
T ss_pred hcCCCCcccCCcHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhcc--CCcCcHHHHHHHHHHHHHHHHHhCC
Confidence 0 00 778877 99999999999999999999999999865 5789999999999999999999984
No 22
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.81 E-value=2e-20 Score=142.07 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=116.7
Q ss_pred cccccCCCCCCCCC-CCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCc-ccccCCC
Q 041764 29 TRVLAKRLPPGPWK-LPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDL-IFSGRPR 106 (175)
Q Consensus 29 ~~~~~~~~~pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~-~~~~~~~ 106 (175)
..+++.+.||||++ +|++||+..+ ..+++.++.+++++||||+++++++.+.+++++|+++++++.+++. .+..++.
T Consensus 7 ~~~~~~~~PPgp~~~lPliG~~~~~-~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~ 85 (491)
T 3v8d_A 7 SRRRQTGEPPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHF 85 (491)
T ss_dssp CCCCCTTSCCEEEEEESSTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHH
T ss_pred hhccCCCCCCCCCCCcceeccHHHH-hcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHH
Confidence 34556678999998 6999999999 8899999999999999999999999999999999999999976542 2222111
Q ss_pred chhH-----------HH----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhc-----CCCCcchHHHHHHHHHH
Q 041764 107 SYAA-----------KK----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQS-----STKPIDLSRLTLLLSNN 166 (175)
Q Consensus 107 ~~~~-----------~~----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~ 166 (175)
.... .. ++|+.+ .+.|+.++++.+.+.+.++++++++.+... .....|+.+++..++++
T Consensus 86 ~~~~~~~g~~~~~~~~g~~~~~~Rr~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (491)
T 3v8d_A 86 ALSAKAFGHRSIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFE 164 (491)
T ss_dssp HHHHHHHTCCCCCGGGSSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHHHHH
T ss_pred HHHHHhcCCcccccccchhHHHHHHHH-HHHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHHHHH
Confidence 1000 00 568877 899999999999999999999999755321 12457999999999999
Q ss_pred HHHHHhcCC
Q 041764 167 IVCRVAFGQ 175 (175)
Q Consensus 167 ~i~~~~fG~ 175 (175)
+++..+||.
T Consensus 165 ~~~~~~fG~ 173 (491)
T 3v8d_A 165 AGYLTIFGR 173 (491)
T ss_dssp HHHHHHHCB
T ss_pred HHHHHHcCc
Confidence 999999984
No 23
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.81 E-value=9e-20 Score=136.85 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=104.0
Q ss_pred cccCCCCCCCCCCCcccccc-ccCCCCCcHHHHHHHHhhCCeEEEec-CCccEEEeccHHHHHHHHHhcCcccccCCC--
Q 041764 31 VLAKRLPPGPWKLPVLGNLH-QLNGDSPHVSLQHLSNDYGPLMFLQL-GSVPTLVISSADVAREIFRTHDLIFSGRPR-- 106 (175)
Q Consensus 31 ~~~~~~~pgp~~~p~~G~~~-~~~~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~~-- 106 (175)
++.++.||||+++|++|++. .+ ..+++..+.++ ++||||+++++ ++.+.++++||+++++++.++ .|++++.
T Consensus 22 ~~~~~~~PGP~~~p~lG~~~~~~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~ 97 (436)
T 2cd8_A 22 RRTQQGTTASPPVLDLGALGQDF-AADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNS 97 (436)
T ss_dssp ------------CCBHHHHHHHH-HHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGC
T ss_pred chhccCCCCCCccccCCCCCccc-ccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCccccccc
Confidence 34456799999999999976 44 56889999999 89999999998 778899999999999999875 3544431
Q ss_pred ch------hHHH------------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHH
Q 041764 107 SY------AAKK------------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNI 167 (175)
Q Consensus 107 ~~------~~~~------------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~ 167 (175)
.. .... ++||.+ ++.|+.++++.+.+.+.++++++++.|.+..++++|+.+++ ..+++|+
T Consensus 98 ~~~~~~~~~~~~~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~~v 176 (436)
T 2cd8_A 98 TTPLTEAEAALNHNMLESDPPRHTRLRKLV-AREFTMRRVELLRPRVQEIVDGLVDAMLAAPDGRADLMESLAWPLPITV 176 (436)
T ss_dssp SSCCCTTGGGTCCSGGGCCTTHHHHHHHHH-GGGSSHHHHHTTHHHHHHHHHHHHHHHHTCTTSCEEHHHHTTTHHHHHH
T ss_pred ccccccccccccccccccCchHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHH
Confidence 00 0000 778887 99999999999999999999999999985335689999977 5899999
Q ss_pred HHHHhcCC
Q 041764 168 VCRVAFGQ 175 (175)
Q Consensus 168 i~~~~fG~ 175 (175)
++. +||.
T Consensus 177 i~~-~~G~ 183 (436)
T 2cd8_A 177 ISE-LLGV 183 (436)
T ss_dssp HHH-HHTC
T ss_pred HHH-HhCC
Confidence 998 6883
No 24
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.78 E-value=1.6e-19 Score=133.63 Aligned_cols=129 Identities=18% Similarity=0.153 Sum_probs=109.8
Q ss_pred CCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCC-CchhHHH-----
Q 041764 39 GPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRP-RSYAAKK----- 112 (175)
Q Consensus 39 gp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~-~~~~~~~----- 112 (175)
++..+|++||+.++ ..+++.++.+++++|||+++ ++++.+.++++||+++++++.++ .|++++ .......
T Consensus 3 ~~~~~p~iGnl~~~-~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~g~~ 78 (389)
T 1n97_A 3 RLSLREAWPYLKDL-QQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLTGRG 78 (389)
T ss_dssp ECCHHHHHHHHHHH-HHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHHCSS
T ss_pred ccccccccccHHHH-hhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHhCCc
Confidence 34557999999888 56788999999999999999 99889999999999999999876 666654 2111100
Q ss_pred ----------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcCC
Q 041764 113 ----------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 ----------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|. ++++|+.+++..+++|+++.++||.
T Consensus 79 l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~---~~~~dl~~~~~~~~~~vi~~~~fG~ 147 (389)
T 1n97_A 79 LLTDWGESWKEARKAL-KDPFLPKNVRGYREAMEEEARAFFGEWR---GEERDLDHEMLALSLRLLGRALFGK 147 (389)
T ss_dssp TTTCCHHHHHHHHHHH-CGGGSHHHHHTTHHHHHHHHHHHHHTCC---SCCEEHHHHHHHHHHHHHHHHHHSS
T ss_pred cccCCcHHHHHHHHHh-CcccCHHHHHHHHHHHHHHHHHHHHHcc---CCcCcHHHHHHHHHHHHHHHHHcCC
Confidence 677877 9999999999999999999999999987 5689999999999999999999994
No 25
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.77 E-value=1.5e-18 Score=131.90 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=111.2
Q ss_pred ccccCCCCCCCCC-CCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCch
Q 041764 30 RVLAKRLPPGPWK-LPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY 108 (175)
Q Consensus 30 ~~~~~~~~pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~ 108 (175)
.+++.+.||||++ +|++||+..+ ..+++.++.+++++||++|++++++.+.++++||+++++++.++...++.++...
T Consensus 13 ~~~~~~~PPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~ 91 (498)
T 3b6h_A 13 RTRRPGEPPLDLGSIPWLGYALDF-GKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAI 91 (498)
T ss_dssp CCCCTTCCCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHH
T ss_pred hccCCCCCCCCCCCCcchhhHHHh-ccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHH
Confidence 3455567999988 8999999888 5678899999999999999999999999999999999999976653232221111
Q ss_pred hH------------HH-HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhc---CCCCcchHHHHHHHHHHHHHHHh
Q 041764 109 AA------------KK-AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQS---STKPIDLSRLTLLLSNNIVCRVA 172 (175)
Q Consensus 109 ~~------------~~-~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~i~~~~ 172 (175)
.. .. .+|+.. .+.|+.++++.+.+.+.+++...++..... ....+|+.+.+..+++++++.++
T Consensus 92 ~~~~~~~g~~~~~~~~~~~rr~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vi~~~~~~~~ 170 (498)
T 3b6h_A 92 FLMERIFDVQLPHYSPSDEKARM-KLTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRAGYLTL 170 (498)
T ss_dssp HHHHHTSCCCCTTCCHHHHHHHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccccCHHHHHHHH-HHhhchHhHHHHHHHHHHHHHHHHhhcccccCCCcceecHHHHHHHHHHHHHHHhh
Confidence 00 00 567777 889999999988888888887777665432 12347899999999999999999
Q ss_pred cCC
Q 041764 173 FGQ 175 (175)
Q Consensus 173 fG~ 175 (175)
||.
T Consensus 171 fG~ 173 (498)
T 3b6h_A 171 YGI 173 (498)
T ss_dssp HCB
T ss_pred cCc
Confidence 983
No 26
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.74 E-value=1.4e-18 Score=131.33 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=110.9
Q ss_pred cccCCCCCCCCC-CCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCch-
Q 041764 31 VLAKRLPPGPWK-LPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY- 108 (175)
Q Consensus 31 ~~~~~~~pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~- 108 (175)
+.+.+.||||++ +|++||+..+ ..+++.++.+++++||||+++++++.+.+++++|+++++++.++.. ++.++...
T Consensus 14 ~~~~~~pPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~~ 91 (475)
T 3b98_A 14 TRRRNEPPLDKGMIPWLGHALEF-GKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQV 91 (475)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHHH
T ss_pred ccCCCCCCCCCCCcchHHhHHHH-hhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHHH
Confidence 445568999998 8999999988 6788999999999999999999999999999999999999976542 22211110
Q ss_pred hH-----------HH-HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcC-C---CCcchHHHHHHHHHHHHHHHh
Q 041764 109 AA-----------KK-AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSS-T---KPIDLSRLTLLLSNNIVCRVA 172 (175)
Q Consensus 109 ~~-----------~~-~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~---~~~d~~~~~~~~~~~~i~~~~ 172 (175)
.. .. .+|+.+ .+.|+.++++.+.+.+.++++++++.+.... + ..+|+...+..+++++++...
T Consensus 92 ~~~~~~g~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (475)
T 3b98_A 92 LMKRIFNMILPSHNPESEKKRA-EMHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFKTGYLTV 170 (475)
T ss_dssp HHHHTTCCCCTTCCHHHHHHHH-HHHTSHHHHHHHHHHHHHHHHHHSSTTTTTCSSCSCEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCChHHHHHHH-HHHcChhhHHHHHHHHHHHHHHHHhhcccccCCCCceeehHHHHHHHHHHHHhhhhe
Confidence 00 00 667777 8999999999999999999999888765431 1 246788888888888888888
Q ss_pred cC
Q 041764 173 FG 174 (175)
Q Consensus 173 fG 174 (175)
||
T Consensus 171 ~g 172 (475)
T 3b98_A 171 FG 172 (475)
T ss_dssp HC
T ss_pred eC
Confidence 87
No 27
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.74 E-value=3.2e-18 Score=129.81 Aligned_cols=144 Identities=13% Similarity=0.112 Sum_probs=108.3
Q ss_pred ccccCCCCCCCCC-CCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcC-cccccCCCc
Q 041764 30 RVLAKRLPPGPWK-LPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHD-LIFSGRPRS 107 (175)
Q Consensus 30 ~~~~~~~~pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~-~~~~~~~~~ 107 (175)
.+...+.||||++ +|++||+.++ ..+++.++.+++++||+++++++++.+.++++||+++++++.++. ..+......
T Consensus 8 ~~~~~~~pPgp~~~~P~iG~~~~~-~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~~ 86 (491)
T 3dax_A 8 RRRQTGEPPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA 86 (491)
T ss_dssp CCCCTTCCCEEEEEESCTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHHH
T ss_pred hccCCCCCCcCCCcccchhhHHHH-hhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHHH
Confidence 3445567899887 8999999988 678889999999999999999999999999999999999997654 222211100
Q ss_pred ----------h-hHHH----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhc-----CCCCcchHHHHHHHHHHH
Q 041764 108 ----------Y-AAKK----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQS-----STKPIDLSRLTLLLSNNI 167 (175)
Q Consensus 108 ----------~-~~~~----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~ 167 (175)
. .... +.|+.+ .+.|+.++++.+.+.+.+++.+.++..... ....+|+.+.+..+++++
T Consensus 87 ~~~~~~g~~~~~~~~g~~w~~~r~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 165 (491)
T 3dax_A 87 TSAKAFGHRSIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEA 165 (491)
T ss_dssp HHHHHHTCCCCCGGGTSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccccchhHHHHHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHHHHH
Confidence 0 0011 466766 788999999999888888888877655322 113578999999999999
Q ss_pred HHHHhcCC
Q 041764 168 VCRVAFGQ 175 (175)
Q Consensus 168 i~~~~fG~ 175 (175)
++.+.||.
T Consensus 166 ~~~~~fG~ 173 (491)
T 3dax_A 166 GYLTIFGR 173 (491)
T ss_dssp HHHHHHCB
T ss_pred hHHHHcCc
Confidence 99999983
No 28
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.72 E-value=3.2e-17 Score=122.16 Aligned_cols=129 Identities=13% Similarity=0.057 Sum_probs=101.9
Q ss_pred CCCCCCCCccccccccCCCCCcHHHHHHHHhh-CCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCch-------
Q 041764 37 PPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDY-GPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY------- 108 (175)
Q Consensus 37 ~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~y-g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~------- 108 (175)
|||| |++||+.++ ..+++.++.+++++| |||+++.+++.+.+++++|+.++ ++.+. ..|++.+...
T Consensus 4 pPg~---P~iG~~~~~-~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~ 77 (415)
T 3awm_A 4 TPHT---KGPDETLSL-LADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTL 77 (415)
T ss_dssp --------CCCCHHHH-HHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTT
T ss_pred CCCC---CccchHHHH-HhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhc
Confidence 6665 899999988 678999999999999 79999998888999999999986 66554 2444322110
Q ss_pred -------hHHH----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcCC
Q 041764 109 -------AAKK----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 109 -------~~~~----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~ 175 (175)
.... ++|+.+ ++.|+.++++.+.+.+.+.++++++.|.+ ++++|+.+.+..+++++++++ ||.
T Consensus 78 ~g~~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~~~~--~~~vdl~~~~~~~~~~vi~~~-~G~ 151 (415)
T 3awm_A 78 LGQGGVQGLDGETHRHRKQMF-MGLMTPERVRALAQLFEAEWRRAVPGWTR--KGEIVFYDELHEPLTRAVCAW-AGV 151 (415)
T ss_dssp SCSSSGGGCCHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HSEEEHHHHHHHHHHHHHHHH-HTC
T ss_pred cCCcceeecCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHhhcc--CCcEeHHHHHHHHHHHHHHHH-cCC
Confidence 0000 667777 99999999999999999999999999986 357999999999999999998 773
No 29
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.72 E-value=7e-17 Score=119.95 Aligned_cols=134 Identities=14% Similarity=0.144 Sum_probs=103.4
Q ss_pred CCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecC-CccEEEeccHHHHHHHHHhcC-cccccCCCch-----
Q 041764 36 LPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG-SVPTLVISSADVAREIFRTHD-LIFSGRPRSY----- 108 (175)
Q Consensus 36 ~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-~~~~v~i~~p~~~~~il~~~~-~~~~~~~~~~----- 108 (175)
.||||+++|++|+... +++..+.+++ +||||+++.++ +.+.+++++++.+++++.++. ..+..++...
T Consensus 2 ~pPGp~~~P~~g~~~~----~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~ 76 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP----EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSAS 76 (404)
T ss_dssp ----CCBSSCCCSSTT----SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHH
T ss_pred CCCCCCCCCCCCCcCC----CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCcccccc
Confidence 4899999999998653 7888888886 59999999875 667788999999999998763 1222222110
Q ss_pred ----------hH--HH----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHHHH
Q 041764 109 ----------AA--KK----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSS--TKPIDLSRLTLLLSNNIVCR 170 (175)
Q Consensus 109 ----------~~--~~----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~i~~ 170 (175)
.. .. ++||.+ ++.|+.++++.+.+.+.++++++++.|.+.. ++++|+.+.+...+.++++.
T Consensus 77 ~~~~~~~~~~l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~~~i~~ 155 (404)
T 1jfb_A 77 GKQAAKAKPTFVDMDPPEHMHQRSMV-EPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIY 155 (404)
T ss_dssp HHHHTTSCCCGGGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHH
T ss_pred ccchhcccCcccccCchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 00 00 678877 9999999999999999999999999998642 46799999999999999999
Q ss_pred HhcCC
Q 041764 171 VAFGQ 175 (175)
Q Consensus 171 ~~fG~ 175 (175)
.+||.
T Consensus 156 ~~~G~ 160 (404)
T 1jfb_A 156 TLLGV 160 (404)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 99984
No 30
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.72 E-value=4.6e-17 Score=121.41 Aligned_cols=126 Identities=11% Similarity=0.108 Sum_probs=102.3
Q ss_pred CCccccccccCCCCCcHHHHHHHHhhC-CeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCch-------------
Q 041764 43 LPVLGNLHQLNGDSPHVSLQHLSNDYG-PLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY------------- 108 (175)
Q Consensus 43 ~p~~G~~~~~~~~~~~~~~~~~~~~yg-~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~------------- 108 (175)
.|++||+.++ ..+++.++.+++++|| ||+++.+++.+.+++++|++++.++ +. ..|++.+...
T Consensus 8 ~P~lG~~~~~-~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~~~g~~~l 84 (417)
T 1izo_A 8 DKSLDNSLTL-LKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-DT-DRFQRQNALPKRVQKSLFGVNAI 84 (417)
T ss_dssp CCCTTHHHHH-HHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-CT-TTEECTTCSCHHHHTTTTCTTCG
T ss_pred CCccchHHHH-hhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-cc-cccccccccccchhhhhccccce
Confidence 3899999988 6788999999999998 9999999889999999999998554 32 2333221110
Q ss_pred -hHHH----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcCC
Q 041764 109 -AAKK----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 109 -~~~~----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~ 175 (175)
.... ++|+.+ ++.|+.++++.+.+.+.+.++++++.|.+ ++++|+.+.+..+++|+++.+ ||.
T Consensus 85 ~~~dg~~h~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~--~~~~dl~~~~~~~~~~vi~~~-~G~ 152 (417)
T 1izo_A 85 QGMDGSAHIHRKMLF-LSLMTPPHQKRLAELMTEEWKAAVTRWEK--ADEVVLFEEAKEILCRVACYW-AGV 152 (417)
T ss_dssp GGCCHHHHHHHHHHH-HHTSSHHHHHHHHHHHHHHHHHHHHHHTT--SSEEEHHHHHHHHHHHHHHHH-HTC
T ss_pred eecCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHhc--CCCeeHHHHHHHHHHHHHHHH-cCC
Confidence 0000 667777 99999999999999999999999999976 467999999999999999998 573
No 31
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.71 E-value=1.8e-16 Score=119.23 Aligned_cols=119 Identities=12% Similarity=0.294 Sum_probs=98.2
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCc------------------h--hHHH-
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRS------------------Y--AAKK- 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~------------------~--~~~~- 112 (175)
+..++..+.+|+++||||+++++++.+.++++||+++++++.++ .+.+++.. . ....
T Consensus 9 g~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w 86 (456)
T 3mdm_A 9 GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMST--KYNKDSKMYRALQTVFGERLFGQGLVSECNYERW 86 (456)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTCT--TSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHH
T ss_pred cchHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhhc--cccccchhHHHHHHhhcccccCCCcccCCChHHH
Confidence 34667889999999999999999999999999999999999643 22221110 0 0111
Q ss_pred -HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHHHHHHHhcCC
Q 041764 113 -AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQS--STKPIDLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 -~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++.+++.+.+. +++++|+.+++..+++|+++.++||.
T Consensus 87 ~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~ 151 (456)
T 3mdm_A 87 HKQRRVI-DLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGM 151 (456)
T ss_dssp HHHHHHH-GGGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSSSSCEEHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHHHHHHHHHHcCC
Confidence 778877 999999999999999999999999999864 34689999999999999999999994
No 32
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.71 E-value=1.2e-17 Score=126.98 Aligned_cols=144 Identities=13% Similarity=0.180 Sum_probs=109.3
Q ss_pred ccccCCCCCCCCCCCccccccccC----CCCCcHHHHHHHHhhCC-eEEEecCCccE-------EEeccHHHHHHHHHhc
Q 041764 30 RVLAKRLPPGPWKLPVLGNLHQLN----GDSPHVSLQHLSNDYGP-LMFLQLGSVPT-------LVISSADVAREIFRTH 97 (175)
Q Consensus 30 ~~~~~~~~pgp~~~p~~G~~~~~~----~~~~~~~~~~~~~~yg~-i~~~~~~~~~~-------v~i~~p~~~~~il~~~ 97 (175)
...+.+.||||++||++|++.++. ..+++.++.++++|||+ ||++++++.+. +++++++..+.++.+.
T Consensus 23 ~~~p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~ 102 (495)
T 3dsk_A 23 KDLPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVD 102 (495)
T ss_dssp -CCCBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTT
T ss_pred CCCCCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecccc
Confidence 445667899999999999987764 47888999999999999 99999988887 6677777766555332
Q ss_pred C----ccccc-CCC-chh--------H-----HH--HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhc--CCCCc
Q 041764 98 D----LIFSG-RPR-SYA--------A-----KK--AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQS--STKPI 154 (175)
Q Consensus 98 ~----~~~~~-~~~-~~~--------~-----~~--~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (175)
. ..+.. .+. ... . .. ++|+.+ .+.|+... +.+.+.++++++++++.|.+. +++++
T Consensus 103 ~v~k~~~~~~~~~~~~~l~g~~~~~~~~~~~g~~h~~~R~~~-~~~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~~~~v 180 (495)
T 3dsk_A 103 KVEKKDLLTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLL-FFLLKSSR-NRIFPEFQATYSELFDSLEKELSLKGKA 180 (495)
T ss_dssp TEECSSCTTSSSCCCGGGGTTCCCGGGCCTTSHHHHHHHHHH-HHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHHHSSE
T ss_pred cccccccccccCCCCccccCCCcceeeeCCCchHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 1 11111 010 000 0 01 667777 88898765 889999999999999999762 34689
Q ss_pred chHHHHHHHHHHHHHHHhcCC
Q 041764 155 DLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 155 d~~~~~~~~~~~~i~~~~fG~ 175 (175)
|+.+++..+++++++.++||.
T Consensus 181 dl~~~~~~~~~~~i~~~~~G~ 201 (495)
T 3dsk_A 181 DFGGSSDGTAFNFLARAFYGT 201 (495)
T ss_dssp ESHHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999984
No 33
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.70 E-value=1.7e-16 Score=117.99 Aligned_cols=132 Identities=18% Similarity=0.228 Sum_probs=105.2
Q ss_pred ccCCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEe----c-CC-ccEEEeccHHHHHHHH-HhcCcccccC
Q 041764 32 LAKRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQ----L-GS-VPTLVISSADVAREIF-RTHDLIFSGR 104 (175)
Q Consensus 32 ~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~----~-~~-~~~v~i~~p~~~~~il-~~~~~~~~~~ 104 (175)
...+.||||+++|+. + ..+++..+.++ ++||||++++ + ++ .+.++++||+++++++ .++. ++++
T Consensus 7 ~~~~lppgp~~~p~~-----~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~~--~~~~ 77 (406)
T 1ued_A 7 QVAPLLREPANFQLR-----T-NCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHEH--FTTR 77 (406)
T ss_dssp SCCCEEECCTTTTCE-----E-TTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCSS--EECC
T ss_pred CCCCCcccCcccCCC-----C-CCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCcc--cccc
Confidence 345678999999986 3 57889999999 9999999999 6 78 8999999999999999 5432 3332
Q ss_pred CC--ch---h-----HH--H---------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH-
Q 041764 105 PR--SY---A-----AK--K---------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLL- 162 (175)
Q Consensus 105 ~~--~~---~-----~~--~---------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 162 (175)
+. .. . .. . ++||.+ ++.|+.++++.+.+.+.++++++++.|.+. |+++|+.+++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~d~~~~~~~~ 155 (406)
T 1ued_A 78 PQFTQSKSGAHVEAQFVGQISTYDPPEHTRLRKML-TPEFTVRRIRRMEPAIQSLIDDRLDLLEAE-GPSADLQGLFADP 155 (406)
T ss_dssp CCC---------CGGGTTCGGGCCTTHHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTEEHHHHTHHH
T ss_pred ccccccccccccccccccccccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeeHHHHHHHH
Confidence 21 00 0 00 0 678877 999999999999999999999999999853 568999998865
Q ss_pred HHHHHHHHHhcCC
Q 041764 163 LSNNIVCRVAFGQ 175 (175)
Q Consensus 163 ~~~~~i~~~~fG~ 175 (175)
+++|+++. +||.
T Consensus 156 ~~~~vi~~-~~G~ 167 (406)
T 1ued_A 156 VGAHALCE-LLGI 167 (406)
T ss_dssp HHHHHHHH-HHTC
T ss_pred hHHHHHHH-HcCC
Confidence 99999994 6884
No 34
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.64 E-value=2.3e-15 Score=112.12 Aligned_cols=134 Identities=18% Similarity=0.231 Sum_probs=102.6
Q ss_pred CCCCCCCCCCccccccccCCCCCcHHHHHHHHhh-CCeEEEec-CCccEEEeccHHHHHHHHHhcCcccccCCC------
Q 041764 35 RLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDY-GPLMFLQL-GSVPTLVISSADVAREIFRTHDLIFSGRPR------ 106 (175)
Q Consensus 35 ~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~y-g~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~~------ 106 (175)
..||+|+..|.+.....+ ..+++..+.++ ++| |||+++++ ++.+.++++||+++++++.++. +++++.
T Consensus 5 ~~~~~~~~~P~~~~~~~~-~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~ 80 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSC-PYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDPR--LSSNRTDDNFPA 80 (412)
T ss_dssp ---CCCCSSCBSSCCCSS-TTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCTT--EECCTTSTTSCC
T ss_pred CCCCCCCCCCCCCCCchh-ccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCcc--cccCcccccccc
Confidence 456777777765333445 67899999999 788 99999997 7899999999999999997642 222111
Q ss_pred c----------h-hHHH-------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH-HHHHHH
Q 041764 107 S----------Y-AAKK-------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTL-LLSNNI 167 (175)
Q Consensus 107 ~----------~-~~~~-------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~ 167 (175)
. . .... ++||.+ ++.|+.++++.+.+.+.++++++++.|.+. ++++|+.+.+. .+++|+
T Consensus 81 ~~~~~~~~~~~~~~l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~d~~~~~~~~~~~~v 158 (412)
T 2zbx_A 81 TSPRFEAVRESPQAFIGLDPPEHGTRRRMT-ISEFTVKRIKGMRPEVEEVVHGFLDEMLAA-GPTADLVSQFALPVPSMV 158 (412)
T ss_dssp CSGGGC----CCCCGGGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHH-CSCEEHHHHTTTHHHHHH
T ss_pred cccccccccccccccccCCcHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHH
Confidence 0 0 0000 678877 999999999999999999999999999853 56799999886 599999
Q ss_pred HHHHhcCC
Q 041764 168 VCRVAFGQ 175 (175)
Q Consensus 168 i~~~~fG~ 175 (175)
++. +||.
T Consensus 159 i~~-~~G~ 165 (412)
T 2zbx_A 159 ICR-LLGV 165 (412)
T ss_dssp HHH-HHTC
T ss_pred HHH-HcCC
Confidence 997 6883
No 35
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.62 E-value=7.4e-16 Score=116.34 Aligned_cols=143 Identities=10% Similarity=0.140 Sum_probs=103.5
Q ss_pred cccCCCCCCCCCCCccccccccC----CC-CCcHHHHHHHHhhCC-eEEEecCCc-------cEEEeccHHHHHHHHHh-
Q 041764 31 VLAKRLPPGPWKLPVLGNLHQLN----GD-SPHVSLQHLSNDYGP-LMFLQLGSV-------PTLVISSADVAREIFRT- 96 (175)
Q Consensus 31 ~~~~~~~pgp~~~p~~G~~~~~~----~~-~~~~~~~~~~~~yg~-i~~~~~~~~-------~~v~i~~p~~~~~il~~- 96 (175)
..+.+.+|||.+||++|++.++. .. +++.++.+++++||+ ||++++++. ..+.+++.+..+.++..
T Consensus 5 ~~Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~ 84 (473)
T 3dan_A 5 SKPLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVS 84 (473)
T ss_dssp GSCBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTT
T ss_pred CCCCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCc
Confidence 34567789999999999988642 34 788899999999999 999998643 34444555544344421
Q ss_pred ---cCcccccC-CC----ch----h--------HHHHhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhc--CCCCc
Q 041764 97 ---HDLIFSGR-PR----SY----A--------AKKAVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQS--STKPI 154 (175)
Q Consensus 97 ---~~~~~~~~-~~----~~----~--------~~~~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (175)
+...+... +. .. . ...++|+.+ ++.|+.+ ++.+.+.++++++++++.|.+. +++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~R~~~-~~~f~~~-~~~~~~~i~~~~~~ll~~~~~~~~~~~~v 162 (473)
T 3dan_A 85 KVEKKDLFTGTYMPSTKLTGGYRVLSYLDPSEPRHAQLKNLL-FFMLKNS-SNRVIPQFETTYTELFEGLEAELAKNGKA 162 (473)
T ss_dssp TEECSSCTTSSSCCCGGGGTTSCCGGGCCTTSHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCE
T ss_pred ceeccccccccccCCccccCCCcceeeeCCCcHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 11111110 00 00 0 001677777 9999995 8999999999999999999752 24689
Q ss_pred chHHHHHHHHHHHHHHHhcCC
Q 041764 155 DLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 155 d~~~~~~~~~~~~i~~~~fG~ 175 (175)
|+.+++..+++++++.++||.
T Consensus 163 dl~~~~~~~~~~~i~~~~~G~ 183 (473)
T 3dan_A 163 AFNDVGEQAAFRFLGRAYFNS 183 (473)
T ss_dssp ECHHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999994
No 36
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.60 E-value=9.7e-15 Score=108.59 Aligned_cols=133 Identities=14% Similarity=0.199 Sum_probs=103.2
Q ss_pred cCCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEec-CCcc-EEEeccHHHHHHHHHhcCcccccCCCch--
Q 041764 33 AKRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQL-GSVP-TLVISSADVAREIFRTHDLIFSGRPRSY-- 108 (175)
Q Consensus 33 ~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~-~~~~-~v~i~~p~~~~~il~~~~~~~~~~~~~~-- 108 (175)
..+.+|+|+.+|+.++ . ..+++.++.+++ +||||+++.+ ++.+ .++++||+++++++.++ .|++++...
T Consensus 6 ~~~~~~~~~~~p~~~~---~-~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~~--~f~~~~~~~~~ 78 (406)
T 1s1f_A 6 ISQAVPPVRDWPAVDL---P-GSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTNDP--RFGREAVMDRQ 78 (406)
T ss_dssp --CCSCCEEECCCCCC---C-TTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTCT--TEESTTTTTTT
T ss_pred HhhhccCCCCCCCCcc---c-ccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcCC--CccCCcCCCCC
Confidence 3456788887888766 3 578999998885 7999999996 5666 99999999999999763 454432110
Q ss_pred -------h---HH--H--------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHH
Q 041764 109 -------A---AK--K--------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNI 167 (175)
Q Consensus 109 -------~---~~--~--------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~ 167 (175)
. .. . ++||.+ ++.|+.++++.+.+.+.++++++++.|.+. ++++|+.+.+ ..+++|+
T Consensus 79 ~~~~~~~~~~~~~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~d~~~~~~~~~~~~v 156 (406)
T 1s1f_A 79 VTRLAPHFIPARGAVGFLDPPDHTRLRRSV-AAAFTARGVERVRERSRGMLDELVDAMLRA-GPPADLTEAVLSPFPIAV 156 (406)
T ss_dssp BCBSSSSCSSCTTSGGGCCTTHHHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHHHH-CSSEEHHHHTTTHHHHHH
T ss_pred cccccccccccccccccCCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHhhHhHHHH
Confidence 0 00 0 778877 999999999999999999999999999842 4689998776 5799999
Q ss_pred HHHHhcCC
Q 041764 168 VCRVAFGQ 175 (175)
Q Consensus 168 i~~~~fG~ 175 (175)
++. +||.
T Consensus 157 i~~-~~G~ 163 (406)
T 1s1f_A 157 ICE-LMGV 163 (406)
T ss_dssp HHH-HHTC
T ss_pred HHH-HhCC
Confidence 998 5884
No 37
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.59 E-value=9.5e-15 Score=109.49 Aligned_cols=134 Identities=15% Similarity=0.121 Sum_probs=103.6
Q ss_pred CCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEe--------cCCccEEEeccHHHHHHHHHhcCcccccCC
Q 041764 34 KRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQ--------LGSVPTLVISSADVAREIFRTHDLIFSGRP 105 (175)
Q Consensus 34 ~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~--------~~~~~~v~i~~p~~~~~il~~~~~~~~~~~ 105 (175)
...|+.|..+++++....- ..+++..+.++ ++||||+++. +|+.+.+++++|+++++++.+. ..|++++
T Consensus 17 ~~~p~~~~~~~~~~~~~~~-~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~-~~fs~~~ 93 (433)
T 3ivy_A 17 VPSPNLPPGFDFTDPAIYA-ERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHS-DVFSSYE 93 (433)
T ss_dssp ---CCCCTTCCTTCHHHHT-TCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCT-TTEESTT
T ss_pred cCCCCCCCCCCCCCHHHhh-cCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcCh-hhccCCc
Confidence 4456777777766554332 45799999999 7899999998 4557899999999999999665 4565543
Q ss_pred Cchh-----------H---HH-----------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q 041764 106 RSYA-----------A---KK-----------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT 160 (175)
Q Consensus 106 ~~~~-----------~---~~-----------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 160 (175)
.... . .. ++||.+ ++.|+.++++.+.+.+.++++++++.|.. ++++|+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~d~~~~~ 170 (433)
T 3ivy_A 94 NGVIPRFKNDIAREDIEVQRFVMLNMDAPHHTRLRKII-SRGFTPRAVGRLHDELQERAQKIAAEAAA--AGSGDFVEQV 170 (433)
T ss_dssp TCSCCCCCTTCCHHHHHGGGGSGGGCCTTHHHHHHHHH-GGGSCHHHHHTTHHHHHHHHHHHHHHHHH--HCEEEHHHHT
T ss_pred ccccccccccccccccccccCCccccChHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhh--CCCeeHHHHH
Confidence 2110 0 00 778888 99999999999999999999999999985 3568999887
Q ss_pred -HHHHHHHHHHHhcC
Q 041764 161 -LLLSNNIVCRVAFG 174 (175)
Q Consensus 161 -~~~~~~~i~~~~fG 174 (175)
..+++++++.+ ||
T Consensus 171 ~~~~~~~vi~~l-~G 184 (433)
T 3ivy_A 171 SCELPLQAIAGL-LG 184 (433)
T ss_dssp TSHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHH-cC
Confidence 99999999996 77
No 38
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.57 E-value=2.3e-14 Score=105.71 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=95.2
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCC----ccEEEeccHHHHHHHHHhcCcccccCCCchhHH-------------H----
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGS----VPTLVISSADVAREIFRTHDLIFSGRPRSYAAK-------------K---- 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~----~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~-------------~---- 112 (175)
..+++.++.+++ +||||+++++++ .+.++++||+++++++.+ ...|++++...... .
T Consensus 11 ~~~p~~~~~~lr-~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 88 (384)
T 3oo3_A 11 RLDPVPEFEELQ-KAGPLHEYDTEPGMDGRKQWLVTGHDEVRAILAD-HERFSSMRPVDDEADRALLPGILQAYDPPDHT 88 (384)
T ss_dssp TTEECHHHHHHH-HTCSEECCCCC------CEEEECCHHHHHHHHHC-TTTEECSCCCC-----CCCTTCGGGCCTTHHH
T ss_pred ccChhHHHHHHH-hcCCeeecccccccCCCCEEEEcCHHHHHHHHhC-chhccCCccccccccccccccccccCCChhHH
Confidence 568899999994 999999999876 899999999999999954 45666654332110 0
Q ss_pred HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcCC
Q 041764 113 AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 ~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+. ++++|+.+.+...+.+.++..+||.
T Consensus 89 ~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~d~~~~~~~~~~~~v~~~~~G~ 149 (384)
T 3oo3_A 89 RLRRTV-APAYSARRMERLRPRIEEIVEECLDDFESV-GAPVDFVRHAAWPIPAYIACEFLGV 149 (384)
T ss_dssp HHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHS-CSSEEHHHHTTTHHHHHHHHHHHTC
T ss_pred HHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHcCC
Confidence 678887 999999999999999999999999999763 6789999999888877777778884
No 39
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.57 E-value=4.2e-14 Score=105.48 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=103.3
Q ss_pred ccccCCCCCCCCCCCcc--cccccc----CCCCCcHHHHHHHHhhC--CeEEEe-cCCccEEEeccHHHHHHHHHhcCcc
Q 041764 30 RVLAKRLPPGPWKLPVL--GNLHQL----NGDSPHVSLQHLSNDYG--PLMFLQ-LGSVPTLVISSADVAREIFRTHDLI 100 (175)
Q Consensus 30 ~~~~~~~~pgp~~~p~~--G~~~~~----~~~~~~~~~~~~~~~yg--~i~~~~-~~~~~~v~i~~p~~~~~il~~~~~~ 100 (175)
...+.+.||||++.|.. +....+ ...+++..+.+++ +|| ||++++ ++ +.++++||+++++++.+. ..
T Consensus 6 ~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~~-~~ 81 (415)
T 2zwu_A 6 IQSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYEDY-RH 81 (415)
T ss_dssp -----CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHCT-TT
T ss_pred ccCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcCc-cc
Confidence 35667889999998864 432111 1346778888885 799 999998 54 699999999999999754 35
Q ss_pred cccCC-Cchh------HH-H---------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HH
Q 041764 101 FSGRP-RSYA------AK-K---------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LL 162 (175)
Q Consensus 101 ~~~~~-~~~~------~~-~---------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 162 (175)
|++++ .... .. . ++||.+ ++.|+.++++.+.+.+.++++++++.|.+. +++|+.+.+ ..
T Consensus 82 f~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~--~~~d~~~~~~~~ 158 (415)
T 2zwu_A 82 FSSECPFIPREAGEAYDFIPTSMDPPEQRQFRALA-NQVVGMPVVDKLENRIQELACSLIESLRPQ--GQCNFTEDYAEP 158 (415)
T ss_dssp EETTSCSSSHHHHHHCCCTTTTCCTTTTHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHGGG--TEEEHHHHTTTH
T ss_pred cCCCcccCCCCccccccccCccCCCcHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHH
Confidence 66554 1110 00 1 778887 999999999999999999999999999874 479999865 89
Q ss_pred HHHHHHHHHhcCC
Q 041764 163 LSNNIVCRVAFGQ 175 (175)
Q Consensus 163 ~~~~~i~~~~fG~ 175 (175)
+++|+++.+ ||.
T Consensus 159 ~~~~vi~~~-~G~ 170 (415)
T 2zwu_A 159 FPIRIFMLL-AGL 170 (415)
T ss_dssp HHHHHHHHH-HTC
T ss_pred HHHHHHHHH-cCC
Confidence 999999998 984
No 40
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.56 E-value=3.5e-14 Score=105.60 Aligned_cols=119 Identities=14% Similarity=0.158 Sum_probs=94.8
Q ss_pred cccCCCCCcHHHHHHHHhhCCeEEEec-CCccEEEeccHHHHHHHHHhcCcccccCCC---------chh----H-H-H-
Q 041764 50 HQLNGDSPHVSLQHLSNDYGPLMFLQL-GSVPTLVISSADVAREIFRTHDLIFSGRPR---------SYA----A-K-K- 112 (175)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~~---------~~~----~-~-~- 112 (175)
.++ ..+++..+.++ ++||||+++++ ++.+.++++||+++++++.++. +++++. ... . . .
T Consensus 20 ~~~-~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (408)
T 3abb_A 20 RTC-PYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDPR--LSSDWGHPDFPVVVRRTEDRGGLAFPLI 95 (408)
T ss_dssp CSS-TTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCTT--EECCTTSTTCCCCC---------CCTTT
T ss_pred ccc-ccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCCC--cccccccccccccccCCccccccccccc
Confidence 344 67889999999 89999999998 7889999999999999997643 222211 000 0 0 0
Q ss_pred --------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH-HHHHHHHHHHhcCC
Q 041764 113 --------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTL-LLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 --------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|... |+++|+.+.+. .+++|+++. +||.
T Consensus 96 ~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~d~~~~~~~~~~~~vi~~-~~G~ 164 (408)
T 3abb_A 96 GVDDPVHARQRRML-IPSFGVKRMNAIRPRLQSLVDRLLDDMLAK-GPGADLVSAFALPVPSVAICE-LLGV 164 (408)
T ss_dssp TCCTTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHT-CSCEEHHHHTTTHHHHHHHHH-HHTC
T ss_pred cCCchHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHH-HhCC
Confidence 778877 999999999999999999999999999853 56899999886 599999997 6884
No 41
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.55 E-value=8.7e-15 Score=108.97 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=94.6
Q ss_pred hhhhcccccCCCCCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccC
Q 041764 25 LQEKTRVLAKRLPPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGR 104 (175)
Q Consensus 25 ~~~~~~~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~ 104 (175)
..|+++.++.+.+|||+. ..+++.++.++++ |||| +.++.+.+++++|+++++++.++. .|+++
T Consensus 9 ~iyr~~~~pl~~~PGp~~-----------~~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~~-~f~~~ 72 (411)
T 2jjn_A 9 CCARRTLTTIDEVPGMAD-----------ETALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDTA-TFSSD 72 (411)
T ss_dssp --------CCCSCCCSSC-----------HHHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCTT-TEESC
T ss_pred HhhhcccCCCCCCCCccc-----------ccChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCcc-cccCc
Confidence 445566777778888872 2467778888876 9999 566678999999999999998653 56655
Q ss_pred CCchhH--------HH--------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHH
Q 041764 105 PRSYAA--------KK--------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNI 167 (175)
Q Consensus 105 ~~~~~~--------~~--------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~ 167 (175)
+..... .. ++||.+ ++.|+.++++.+.+.+.++++++++. . ++++|+.+.+ ..+++|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~--~--~~~~d~~~~~~~~~~~~v 147 (411)
T 2jjn_A 73 PTRVIEGASPTPGMIHEIDPPEHRALRKVV-SSAFTPRTISDLEPRIRDVTRSLLAD--A--GESFDLVDVLAFPLPVTI 147 (411)
T ss_dssp GGGGSTTCCCCTTCGGGCCTTHHHHHHHHH-HHHSCHHHHHTTHHHHHHHHHHHHHT--S--CSEEEHHHHTTTHHHHHH
T ss_pred ccccCCcccccccccccCCchHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHhc--C--CCceeHHHHHHHHHHHHH
Confidence 321100 00 778877 99999999999999999999999988 2 4579999554 6899999
Q ss_pred HHHHhcCC
Q 041764 168 VCRVAFGQ 175 (175)
Q Consensus 168 i~~~~fG~ 175 (175)
++.+ ||.
T Consensus 148 i~~~-fG~ 154 (411)
T 2jjn_A 148 VAEL-LGL 154 (411)
T ss_dssp HHHH-HTC
T ss_pred HHHH-cCC
Confidence 9998 984
No 42
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.54 E-value=3.8e-14 Score=105.44 Aligned_cols=117 Identities=20% Similarity=0.344 Sum_probs=94.6
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCC---c--------------------hhH
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPR---S--------------------YAA 110 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~---~--------------------~~~ 110 (175)
..+++..+.++ ++||||+++++++.+.++++||+++++++.++. +++++. . ...
T Consensus 14 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (408)
T 1odo_A 14 GADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENMFTA 90 (408)
T ss_dssp CTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSGGGC
T ss_pred cCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--ccccccccccccccccccccccccccccccccc
Confidence 57888999999 999999999998889999999999999997653 222110 0 000
Q ss_pred HH----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcC-CCCcchHHHHH-HHHHHHHHHHhcCC
Q 041764 111 KK----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSS-TKPIDLSRLTL-LLSNNIVCRVAFGQ 175 (175)
Q Consensus 111 ~~----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~-~~~~~~i~~~~fG~ 175 (175)
.. ++||.+ ++.|+.++++.+.+.+.++++++++.|.+.. ++++|+.+.+. .+++|+++. +||.
T Consensus 91 ~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~d~~~~~~~~~~~~vi~~-~~G~ 159 (408)
T 1odo_A 91 YGPNHRKLRRLV-APAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDLRQELAYPLPIAVIGH-LMGV 159 (408)
T ss_dssp CHHHHHHHHHTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCEEHHHHTTTHHHHHHHHH-HHTC
T ss_pred CChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhhHHHHHHH-HhCC
Confidence 00 678877 9999999999999999999999999998543 57899999886 599999996 6884
No 43
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.54 E-value=1.6e-14 Score=108.05 Aligned_cols=134 Identities=12% Similarity=0.138 Sum_probs=103.7
Q ss_pred ccCCCCCCCCCCCccccccccC---C-CCCcHHHHHHHHhhCCeEEEec-CCccEEEeccHHHHHHHHHhcCcccccCCC
Q 041764 32 LAKRLPPGPWKLPVLGNLHQLN---G-DSPHVSLQHLSNDYGPLMFLQL-GSVPTLVISSADVAREIFRTHDLIFSGRPR 106 (175)
Q Consensus 32 ~~~~~~pgp~~~p~~G~~~~~~---~-~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~~ 106 (175)
.+.+.||| ++|++.+.. . .+++..+.++++ ||||+++++ |+.+.+++++|+++++++.+. ..|++++.
T Consensus 3 ~~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~ 75 (428)
T 1cpt_A 3 ARATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEG 75 (428)
T ss_dssp TTCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSS
T ss_pred cccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCccc
Confidence 34567888 788765431 1 346778888876 799999998 678999999999999999764 35665543
Q ss_pred -c--------h-h---H--------HH---------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcch
Q 041764 107 -S--------Y-A---A--------KK---------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDL 156 (175)
Q Consensus 107 -~--------~-~---~--------~~---------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 156 (175)
. . . . .. ++||.+ ++.|+.++++.+.+.+.++++++++.|.+. ++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~g~~~~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~d~ 153 (428)
T 1cpt_A 76 SEILYDQNNEAFMRSISGGCPHVIDSLTSMDPPTHTAYRGLT-LNWFQPASIRKLEENIRRIAQASVQRLLDF-DGECDF 153 (428)
T ss_dssp CSSCCCHHHHHHHHHHTTTSSCSSCCGGGCCTTHHHHHHHHH-HTTSSHHHHGGGHHHHHHHHHHHHHHHHTS-SSEEEH
T ss_pred cccCCcccccchhccccccccccccccccCChHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHHh-CCCeeh
Confidence 1 1 1 1 01 778887 999999999999999999999999999874 357999
Q ss_pred HHH-HHHHHHHHHHHHhcCC
Q 041764 157 SRL-TLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 157 ~~~-~~~~~~~~i~~~~fG~ 175 (175)
.+. ...+++|+|+.+ ||.
T Consensus 154 ~~~~~~~~~~~vi~~~-fG~ 172 (428)
T 1cpt_A 154 MTDCALYYPLHVVMTA-LGV 172 (428)
T ss_dssp HHHTTTTHHHHHHHHH-HTC
T ss_pred HHHHHhhhHHHHHHHH-cCC
Confidence 865 467999999999 984
No 44
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.54 E-value=6.7e-14 Score=103.98 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=94.1
Q ss_pred CCCCcHHHHHHHHhhCCeEEEec-CCccEEEeccHHHHHHHHHhcCcccccCCC---------c-h--hHHH--------
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQL-GSVPTLVISSADVAREIFRTHDLIFSGRPR---------S-Y--AAKK-------- 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~~---------~-~--~~~~-------- 112 (175)
..+++..+.++ ++||||+++++ ++.+.+++++|+++++++.++ .|++++. . . ....
T Consensus 18 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 94 (403)
T 3aba_A 18 PFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSLLWQDEPE 94 (403)
T ss_dssp TTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCCTTCCTTH
T ss_pred ccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--CcccccccccccccccccccccccccccCCchh
Confidence 56888899999 89999999997 789999999999999999864 3444320 0 0 0000
Q ss_pred --HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 113 --AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 --~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+ .++++|+.+.+ ..+++|+++. +||.
T Consensus 95 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~-~~~~~d~~~~~~~~~~~~vi~~-~~G~ 157 (403)
T 3aba_A 95 HTSDRKLL-AKEFTVRRMQALRPNIQRIVDEHLDAIEA-RGGPVDLVKTFANAVPSMVISD-LFGV 157 (403)
T ss_dssp HHHHHHHH-HHHSCHHHHHTTHHHHHHHHHHHHHHHHH-HCSCEEHHHHTTTHHHHHHHHH-HHTC
T ss_pred HHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHH-HcCC
Confidence 778887 99999999999999999999999999984 25689998766 5799999998 6884
No 45
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.49 E-value=4e-13 Score=100.11 Aligned_cols=117 Identities=19% Similarity=0.313 Sum_probs=94.0
Q ss_pred CCCCcHHHHHHHHhhCCeEEEec-CCccEEEeccHHHHHHHHHhcCcccccCCCc----------hh--------H-HH-
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQL-GSVPTLVISSADVAREIFRTHDLIFSGRPRS----------YA--------A-KK- 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~----------~~--------~-~~- 112 (175)
..+++.++.+++ +||||+++++ ++.+.+++++|+++++++.++ .|++++.. .. . ..
T Consensus 21 ~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 97 (413)
T 2z36_A 21 PFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLDAATLQQLRSQPPLMLG 97 (413)
T ss_dssp TTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCCHHHHHHHTTSCCCGGG
T ss_pred ccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCccccccccccccccccccccccc
Confidence 568899999997 7899999997 789999999999999999863 34443210 10 0 11
Q ss_pred -------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 113 -------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 -------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+.+++++|+.+.+ ..+++++++.+ ||.
T Consensus 98 ~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~d~~~~~~~~~~~~vi~~~-~G~ 166 (413)
T 2z36_A 98 MDGAEHSAARRPV-IGEFTVKRLAALRPRIQDIVDHFIDDMLATDQRPVDLVQALSLPVPSLVICEL-LGV 166 (413)
T ss_dssp CCHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTTCSCSSEEHHHHTTTHHHHHHHHHH-HTC
T ss_pred cCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHhhhhHHHHHHHH-hCC
Confidence 678877 99999999999999999999999999985335689998766 47999999995 874
No 46
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.49 E-value=1.7e-13 Score=101.74 Aligned_cols=115 Identities=14% Similarity=0.211 Sum_probs=94.7
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCc--h-------------hH----HH--
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRS--Y-------------AA----KK-- 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~--~-------------~~----~~-- 112 (175)
..+++..+.++ ++||||+++++++.+.+++++|+++++++.++ .|++++.. . .. ..
T Consensus 13 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (404)
T 1z8o_A 13 HVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFATN 89 (404)
T ss_dssp TSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSSS
T ss_pred ccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhcccc
Confidence 56788899999 89999999999999999999999999999875 45544321 0 11 01
Q ss_pred ----------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 113 ----------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 ----------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+ ++++|+.+.+ ..+++|+++.+ ||.
T Consensus 90 l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~~vi~~~-~G~ 159 (404)
T 1z8o_A 90 MGTSDPPTHTRLRKLV-SQEFTVRRVEAMRPRVEQITAELLDEVGD--SGVVDIVDRFAHPLPIKVICEL-LGV 159 (404)
T ss_dssp GGGCCTTHHHHHHHHH-HTTSCHHHHHHTHHHHHHHHHHHHHTSCS--SSEEEHHHHTTTHHHHHHHHHH-TTC
T ss_pred cccCCCcHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhhhh--cCCcchHHHHhHHHHHHHHHHH-hCC
Confidence 678877 99999999999999999999999999875 5679998765 68999999985 884
No 47
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.48 E-value=1.9e-13 Score=101.83 Aligned_cols=115 Identities=22% Similarity=0.302 Sum_probs=93.9
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCch----------h-H---HH-------
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY----------A-A---KK------- 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~----------~-~---~~------- 112 (175)
..+++..+.++ ++||||+++++++.+.+++++|+++++++.++. |++++... . . ..
T Consensus 19 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h 95 (411)
T 3a4g_A 19 WQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMMILMDPPDH 95 (411)
T ss_dssp TTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCGGGCCTTHH
T ss_pred hcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCcccccccccCCchHH
Confidence 56889999999 899999999999999999999999999997653 55443210 0 0 00
Q ss_pred -HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHH-HHHHHHHHHHHHhcCC
Q 041764 113 -AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRL-TLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 -~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+. +++|+.+. ...+++|+++.+ ||.
T Consensus 96 ~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~--~~vd~~~~~~~~~~~~vi~~~-~G~ 156 (411)
T 3a4g_A 96 TRLRKLV-GRSFTVRRMNELEPRITEIADGLLAGLPTD--GPVDLMREYAFQIPVQVICEL-LGV 156 (411)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHSCSS--SCEEHHHHTTTTHHHHHHHHH-HTC
T ss_pred HHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHhHHHHHHHH-hCC
Confidence 778877 999999999999999999999999999753 57999755 478999999975 883
No 48
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.48 E-value=6.5e-13 Score=99.04 Aligned_cols=116 Identities=17% Similarity=0.273 Sum_probs=95.4
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecC-CccEEEeccHHHHHHHHHhcCcccccCC------C-ch-------------hHHH
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLG-SVPTLVISSADVAREIFRTHDLIFSGRP------R-SY-------------AAKK 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~-~~~~v~i~~p~~~~~il~~~~~~~~~~~------~-~~-------------~~~~ 112 (175)
..+++..+.+++++ |||++++++ |.+.+++++|+++++++.++ .|++++ . .. ....
T Consensus 28 ~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg 104 (417)
T 3tyw_A 28 PFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFIRTDA 104 (417)
T ss_dssp TTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGGGCCH
T ss_pred ccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchhhcCC
Confidence 57899999999988 999999987 58999999999999999876 344321 0 00 0000
Q ss_pred ----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 113 ----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 ----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+. |+++|+.+.+ ..+++++++.+ ||.
T Consensus 105 ~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~d~~~~~~~~~~~~vi~~~-~G~ 169 (417)
T 3tyw_A 105 PEHTRYRRML-LPAFTVRRVRAMRPAVQARVDEILDGMLAA-GGPVDLVSAYANAVSTSVICEL-LGI 169 (417)
T ss_dssp HHHHHHHHHH-GGGGCHHHHHHTHHHHHHHHHHHHHHHHHH-CSSEEHHHHTHHHHHHHHHHHH-HTC
T ss_pred cHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhh-CCCcchHHHHHHHHHHHHHHHH-hCC
Confidence 778887 999999999999999999999999999873 5679999987 68999999997 884
No 49
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.48 E-value=4.5e-13 Score=100.48 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=94.9
Q ss_pred CCCcHHHHHHHHhhCCeEEEecC-------CccEEEeccHHHHHHHHHhcCcccccCCCc------hhH---HH------
Q 041764 55 DSPHVSLQHLSNDYGPLMFLQLG-------SVPTLVISSADVAREIFRTHDLIFSGRPRS------YAA---KK------ 112 (175)
Q Consensus 55 ~~~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~p~~~~~il~~~~~~~~~~~~~------~~~---~~------ 112 (175)
.+++..+.+++ +||||+++.++ +.+.++++||+++++++.++ ..|++++.. ... ..
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~d 121 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIVLD 121 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGGCC
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccccccCC
Confidence 45777888886 68999999986 67899999999999999875 357665421 111 11
Q ss_pred -----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcC-CCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 113 -----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSS-TKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 -----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+.. ++++|+.+.+ ..+++|+++.+ ||.
T Consensus 122 g~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~vd~~~~~~~~~~~~vi~~~-~G~ 189 (435)
T 2wm5_A 122 DPRHQRLRSIV-SRAFTPKVVARIEAAVRDRAHRLVSSMIANNPDRQADLVSELAGPLPLQIICDM-MGI 189 (435)
T ss_dssp TTHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEHHHHTTTHHHHHHHHHH-HTC
T ss_pred cHHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEehHHHHHHHHHHHHHHHH-cCC
Confidence 678877 9999999999999999999999999998652 3479999866 79999999999 984
No 50
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.47 E-value=4.3e-13 Score=99.58 Aligned_cols=115 Identities=13% Similarity=0.200 Sum_probs=93.4
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCch-------hHH--H------------
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY-------AAK--K------------ 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~-------~~~--~------------ 112 (175)
..+++..+.++ ++||||+++++++.+.+++++|+++++++.++ ..|++++... ... .
T Consensus 12 ~~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h~ 89 (404)
T 3ejb_B 12 LKNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMMLFQNQPDHR 89 (404)
T ss_dssp HHCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSGGGCCTTHHH
T ss_pred ccCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcchhhcCCchHH
Confidence 35788888888 58999999999999999999999999999876 4666655311 000 0
Q ss_pred HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHH-HHHHHHHHHHHHhcC
Q 041764 113 AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRL-TLLLSNNIVCRVAFG 174 (175)
Q Consensus 113 ~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~i~~~~fG 174 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+ ++.+|+... ...+++++++.+ ||
T Consensus 90 ~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~d~~~~~~~~~~~~vi~~~-~G 148 (404)
T 3ejb_B 90 RLRTLA-SGAFTPRTTESYQPYIIETVHHLLDQVQG--KKKMEVISDFAFPLASFVIANI-IG 148 (404)
T ss_dssp HHHHHH-HGGGSHHHHHTTHHHHHHHHHHHHHTTTT--TSEEEHHHHTHHHHHHHHHHHH-HT
T ss_pred HHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhhh--cCCcchHHHHHHHHHHHHHHHH-cC
Confidence 778887 99999999999999999999999999876 466898655 456999999985 77
No 51
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.46 E-value=2.2e-12 Score=95.93 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=93.5
Q ss_pred CCCCcHHHHHHHHhhCCeEEEec-CCccEEEeccHHHHHHHHHhcCcccccCCC---------c-hh-------H-----
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQL-GSVPTLVISSADVAREIFRTHDLIFSGRPR---------S-YA-------A----- 110 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~~---------~-~~-------~----- 110 (175)
..+++.++.++ ++||||+++++ ++.+.++++||+++++++.++. |++++. . .. .
T Consensus 25 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 101 (404)
T 2xbk_A 25 MLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDER--IGRTHPDPPSAAQYVRSPFLDLLISDADAESG 101 (404)
T ss_dssp TTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCTT--EESBCSSGGGSCCSSCCHHHHTTCBCSCHHHH
T ss_pred ccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCCC--CCCCccccccCCcccccccccceeeCCCCCCC
Confidence 56788999999 89999999997 7899999999999999997642 332211 0 01 1
Q ss_pred -HH--HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 111 -KK--AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 111 -~~--~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
.. ++||.+ ++.|+.++++.+.+.+.++++++++.|.+. |+++|+.+.+ ..+++++++. +||.
T Consensus 102 ~~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-g~~~d~~~~~~~~~~~~vi~~-~~G~ 167 (404)
T 2xbk_A 102 RRQHAETRRLL-TPLFSARRVLEMQPKVEEAADTLLDAFIAQ-GPPGDLHGELTVPFALTVLCE-VIGV 167 (404)
T ss_dssp HHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHT-CSSEEHHHHTHHHHHHHHHHH-HHTC
T ss_pred CchHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeeHHHHHHHHHHHHHHHH-HhCC
Confidence 22 678877 999999999999999999999999999853 5689998766 5799999997 6873
No 52
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.46 E-value=2.9e-13 Score=101.00 Aligned_cols=116 Identities=16% Similarity=0.258 Sum_probs=93.3
Q ss_pred CCCCcHHHHHHHHhhCCeEEEec-CCccEEEeccHHHHHHHHHhcCcccccCCCc--------h----h-HHH-------
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQL-GSVPTLVISSADVAREIFRTHDLIFSGRPRS--------Y----A-AKK------- 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~--------~----~-~~~------- 112 (175)
..+++..+.++ ++||||+++++ ++.+.++++||+++++++.++ .|++++.. . . ...
T Consensus 36 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h~ 112 (417)
T 2y5n_A 36 GLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGLLSMDPPEHS 112 (417)
T ss_dssp SCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSGGGCCTTHHH
T ss_pred ccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccCccCCchHHH
Confidence 56889999999 89999999997 789999999999999999764 24333211 0 0 000
Q ss_pred HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 113 AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 ~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+. ++++|+.+.+ ..+++|+++. +||.
T Consensus 113 ~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-~~~vdl~~~~~~~~~~~vi~~-~~G~ 173 (417)
T 2y5n_A 113 RLRRLV-VKAFTARRAESLRPRAREIAHELVDQMAAT-GQPADLVAMFARQLPVRVICE-LLGV 173 (417)
T ss_dssp HHHHHH-HHHSCHHHHHHTHHHHHHHHHHHHHHHHHH-CSSEEHHHHTTTTHHHHHHHH-HHTC
T ss_pred HHHHHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCCeeHHHHHHHHhHHHHHHH-HcCC
Confidence 778887 999999999999999999999999999852 2279999776 5699999998 5884
No 53
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.46 E-value=8.3e-14 Score=103.28 Aligned_cols=116 Identities=11% Similarity=0.172 Sum_probs=93.3
Q ss_pred CCCCcHHHHHHHHhh--CCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchh--H-----------HH----Hh
Q 041764 54 GDSPHVSLQHLSNDY--GPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYA--A-----------KK----AV 114 (175)
Q Consensus 54 ~~~~~~~~~~~~~~y--g~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~--~-----------~~----~~ 114 (175)
..+++.++.+++++| |||+++.+++ +.++++||+++++++. +.+.|++++.... . .. ++
T Consensus 18 ~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 95 (398)
T 4fb2_A 18 DGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVIQ-NTKAFSNKGVTFPRYETGEFELMMAGQDDPVHKKY 95 (398)
T ss_dssp TSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHHT-CCSSEEGGGCSSSCC----CCCTTTTCCTTHHHHH
T ss_pred hcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHHh-ChhhccCCcccccCCCCcccccCcccCCchHHHHH
Confidence 678999999999999 9999999875 5999999999999994 4445665443221 0 00 77
Q ss_pred HhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 115 RKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 115 Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
||.+ ++.|+.++++.+.+.+.++++++++.|.+. +.+|+...+ ..+++++++. +||.
T Consensus 96 R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~--~~~d~~~~~~~~~~~~vi~~-~~G~ 153 (398)
T 4fb2_A 96 RQLV-AKPFSPEATDLFTEQLRQSTNDLIDARIEL--GEGDAATWLANEIPARLTAI-LLGL 153 (398)
T ss_dssp HHHH-HTTTCHHHHHTTHHHHHHHHHHHHHTTTTT--TEEEHCCCCCTTHHHHHHHH-HTTS
T ss_pred HHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHHHHH-HcCC
Confidence 8887 999999999999999999999999998763 457875544 7899999998 6773
No 54
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.45 E-value=6.8e-13 Score=98.84 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=92.2
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCC--ccEEEeccHHHHHHHHHhcCcccccCCCc--------hh----HHH-------
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGS--VPTLVISSADVAREIFRTHDLIFSGRPRS--------YA----AKK------- 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~--~~~v~i~~p~~~~~il~~~~~~~~~~~~~--------~~----~~~------- 112 (175)
.++++..+.+++ +||||+++.+++ .+.+++++|+++++++.+. .|++++.. .. ...
T Consensus 26 g~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~ 102 (411)
T 2dkk_A 26 GPEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITNDP--RFGRAEVTQRQITRLAPHFKPRPGSLAFADQP 102 (411)
T ss_dssp SSCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTCT--TEESGGGGGSCBCBSSSCCCCCTTCSTTCCTT
T ss_pred cccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcCC--CcccCCCCCCCccccccchhccccccccCCch
Confidence 456678898887 799999999764 7899999999999999763 34432210 00 000
Q ss_pred ---HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH-HHHHHHHHHHhcCC
Q 041764 113 ---AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTL-LLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 ---~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.+.++++++.|.+. |+++|+.+.+. .+++|+|+. +||.
T Consensus 103 ~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~dl~~~~~~~~~~~vi~~-l~G~ 166 (411)
T 2dkk_A 103 DHNRLRRAV-AGAFTVGATKRLRPRAQEILDGLVDGILAE-GPPADLVERVLEPFPIAVVSE-VMGV 166 (411)
T ss_dssp HHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHHH-CSCEEHHHHTTTHHHHHHHHH-HHTC
T ss_pred HHHHHHHHh-hHhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHH-HhCC
Confidence 778877 999999999999999999999999999874 45799998775 799999998 4884
No 55
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.45 E-value=3.5e-13 Score=100.38 Aligned_cols=116 Identities=18% Similarity=0.225 Sum_probs=93.0
Q ss_pred CCCCcHHHHHHHHhhCCeEEEec-CCccEEEeccHHHHHHHHHhcCcccccCC--C-----------------------c
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQL-GSVPTLVISSADVAREIFRTHDLIFSGRP--R-----------------------S 107 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~--~-----------------------~ 107 (175)
..+++..+.++ ++||||+++++ ++.+.++++||+++++++.++. +++++ . .
T Consensus 16 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (411)
T 1gwi_A 16 VTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGRSM 92 (411)
T ss_dssp CSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCSSG
T ss_pred cCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhcccccc
Confidence 56788899999 89999999997 7899999999999999997653 12111 0 0
Q ss_pred hhHHH----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH-HHHHHHHHHHhcCC
Q 041764 108 YAAKK----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTL-LLSNNIVCRVAFGQ 175 (175)
Q Consensus 108 ~~~~~----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~~fG~ 175 (175)
..... ++||.+ ++.|+.++++.+.+.+.++++++++.|.+ .++++|+.+.+. .+++|+++. +||.
T Consensus 93 ~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~-~~~~~d~~~~~~~~~~~~vi~~-~~G~ 162 (411)
T 1gwi_A 93 LTVDGAEHRRLRTLV-AQALTVRRVEHMRGRITELTDRLLDELPA-DGGVVDLKAAFAYPLPMYVVAD-LMGI 162 (411)
T ss_dssp GGCCHHHHHHHHHHH-TTTSCHHHHHTTHHHHHHHHHHHHHTSCC-SCCCEEHHHHTTTHHHHHHHHH-HHTC
T ss_pred ccCCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcchHHHHhhHHHHHHHHH-HhCC
Confidence 00001 678877 99999999999999999999999999974 357899998886 599999996 6873
No 56
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.45 E-value=3.7e-13 Score=101.33 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=93.2
Q ss_pred CcHHHHHHHHhhCCeE--EEe-cCCccEEEeccHHHHHHHHHhcCcccccCCCchh----------------------HH
Q 041764 57 PHVSLQHLSNDYGPLM--FLQ-LGSVPTLVISSADVAREIFRTHDLIFSGRPRSYA----------------------AK 111 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~--~~~-~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~----------------------~~ 111 (175)
++..+.++ ++||||+ ++. +++.+.+++++|+++++++.+. ..|++++.... ..
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 67777777 5789999 888 6778999999999999999766 55665442111 00
Q ss_pred H--------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 112 K--------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 112 ~--------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
. ++||.+ ++.|+.++++.+.+.+.++++++++.|.+. ++++|+.+.+ ..+++++|+.+ ||.
T Consensus 125 ~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-~~~~dl~~~~~~~~~~~vi~~l-~G~ 194 (450)
T 3tkt_A 125 VQMDAPKHPKLRRLT-QDWFMPKNLARLDGEIRKIANEAIDRMLGA-GEEGDFMALVAAPYPLHVVMQI-LGV 194 (450)
T ss_dssp GGCCTTHHHHHHHHH-HTTTSHHHHGGGHHHHHHHHHHHHHHHHHT-CSEEEHHHHTTTHHHHHHHHHH-TTC
T ss_pred ccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEeeHHHHHHHHHHHHHHHH-cCC
Confidence 1 778887 999999999999999999999999999874 5789998887 79999999986 873
No 57
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.44 E-value=2e-12 Score=96.70 Aligned_cols=115 Identities=13% Similarity=0.119 Sum_probs=93.7
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecC--CccEEEeccHHHHHHHHHhcCcccccCCCc-------------------hhHH-
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLG--SVPTLVISSADVAREIFRTHDLIFSGRPRS-------------------YAAK- 111 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~--~~~~v~i~~p~~~~~il~~~~~~~~~~~~~-------------------~~~~- 111 (175)
..+++.++.+++ +||||+++++| +.+.++++||+++++++.++ .|++++.. ....
T Consensus 19 ~~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (425)
T 2z3t_A 19 IADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVE 95 (425)
T ss_dssp HHCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHT
T ss_pred hcChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccccccccc
Confidence 357888888886 49999999987 78899999999999999864 56655320 0011
Q ss_pred H-----------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 112 K-----------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 112 ~-----------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
. ++||.+ ++.|+.++++.+.+.+.++++++++.|.+. +++|+.+.+ ..+++|+++.+ ||.
T Consensus 96 ~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--g~~dl~~~~~~~~~~~vi~~~-~G~ 167 (425)
T 2z3t_A 96 NWLVFLDPPHHTELRSLL-TTEFSPSIVTGLRPRIAELASALLDRLRAQ--RRPDLVEGFAAPLPILVISAL-LGI 167 (425)
T ss_dssp TCGGGCCHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTTS--SSCBHHHHTTTHHHHHHHHHH-HTC
T ss_pred cccccCCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHH-hCC
Confidence 1 678887 999999999999999999999999999864 379998755 78999999998 884
No 58
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.41 E-value=1e-12 Score=97.38 Aligned_cols=115 Identities=17% Similarity=0.265 Sum_probs=93.2
Q ss_pred CCCCcHHHHHHHHhhCCeEEEec-CCccEEEeccHHHHHHHHHhcCcccc-c-CCC-----c------h-hHH-----H-
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQL-GSVPTLVISSADVAREIFRTHDLIFS-G-RPR-----S------Y-AAK-----K- 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~-~-~~~-----~------~-~~~-----~- 112 (175)
..+++..+.++ ++||||+++++ ++.+.++++||+++++++.++ .|+ + ++. . . ... .
T Consensus 15 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h 91 (396)
T 1n40_A 15 GDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNIAD 91 (396)
T ss_dssp SSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHHHH
T ss_pred ccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhHHH
Confidence 56889999999 99999999997 789999999999999999764 244 3 221 0 1 010 1
Q ss_pred -HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 113 -AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 -~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.+ ++.+.+.+.++++++++.|.+. ++++|+.+.+ ..+++|+++. +||.
T Consensus 92 ~~~R~~~-~~~fs~~-~~~~~~~i~~~~~~l~~~l~~~-~~~~d~~~~~~~~~~~~vi~~-~~G~ 152 (396)
T 1n40_A 92 AGLRKAV-MKAITPK-APGLEQFLRDTANSLLDNLITE-GAPADLRNDFADPLATALHCK-VLGI 152 (396)
T ss_dssp TTCHHHH-HHHTSSC-STTHHHHHHHHHHHHHHHHHHH-CSCEETTTTTHHHHHHHHHHH-HHTC
T ss_pred HHHHHHH-HHhhChH-HHHhHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHhHHHHHHH-HhCC
Confidence 668887 9999999 9999999999999999999863 5679998665 5899999998 7884
No 59
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.41 E-value=1.4e-12 Score=97.26 Aligned_cols=113 Identities=16% Similarity=0.240 Sum_probs=92.5
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCC-----c-------hhH---HH------
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPR-----S-------YAA---KK------ 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~-----~-------~~~---~~------ 112 (175)
..+++..+.++ ++||||++ + ++.+.+++++|+++++++.++. |++++. . ... ..
T Consensus 25 ~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (419)
T 1q5d_A 25 AEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGLFGLP 99 (419)
T ss_dssp TTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHSTTTSC
T ss_pred hhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhcccccccCC
Confidence 56888999998 68999999 6 7789999999999999998764 766541 1 111 11
Q ss_pred -----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHH-HHHHHHHHHHHHhcCC
Q 041764 113 -----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRL-TLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 -----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+. +++|+.+. ...+++|+++.+ ||.
T Consensus 100 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--~~~d~~~~~~~~~~~~vi~~~-fG~ 164 (419)
T 1q5d_A 100 PEDHARVRKLV-NPSFTSRAIDLLRAEIQRTVDQLLDARSGQ--EEFDVVRDYAEGIPMRAISAL-LKV 164 (419)
T ss_dssp HHHHHHHHHHH-GGGGSHHHHGGGHHHHHHHHHHHHHHHTTS--SCEETTTTTGGGSHHHHHHHH-TTC
T ss_pred chHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHH-hCC
Confidence 677877 999999999999999999999999999863 47898865 489999999998 884
No 60
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.39 E-value=1.1e-12 Score=97.34 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=90.1
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCch------hHHH--------HhHhHHH
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY------AAKK--------AVRKIVI 119 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~------~~~~--------~~Rr~~~ 119 (175)
..+++.++.++++ ||||+++. .+.+++++|+++++++.++. .|++++... .... ++||.+
T Consensus 17 ~~~p~~~~~~l~~-~Gpv~~~~---~~~vvv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~l~~~~g~~h~~~R~~~- 90 (398)
T 2xkr_A 17 SREARAAYRWMRA-NQPVFRDR---NGLAAASTYQAVIDAERQPE-LFSNAGGIRPDQPALPMMIDMDDPAHLLRRKLV- 90 (398)
T ss_dssp CTTHHHHHHHHHH-HCSEEECT---TCCEEECSHHHHHHHHTCTT-TEESTTCSSTTSCCCSSGGGCCTTHHHHHHHHH-
T ss_pred ccChhHHHHHHHh-cCCeeecC---CCeEEEecHHHHHHHHhCcc-cccCccccCCcccccccccccCchHHHHHHHHh-
Confidence 3578888999987 99999764 37999999999999997654 565543211 0000 778887
Q ss_pred hhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHH-HHHHHHHHHHHHhcCC
Q 041764 120 MEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRL-TLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 120 ~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~i~~~~fG~ 175 (175)
++.|+.++++.+.+.+.++++++++.|.+. +++|+.+. ...+++|+++.+ ||.
T Consensus 91 ~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~--~~~d~~~~~~~~~~~~vi~~~-fG~ 144 (398)
T 2xkr_A 91 NAGFTRKRVKDKEASIAALCDTLIDAVCER--GECDFVRDLAAPLPMAVIGDM-LGV 144 (398)
T ss_dssp GGGSCHHHHHTTHHHHHHHHHHHHHTTTTT--SEEEHHHHTTTHHHHHHHHHH-HTC
T ss_pred hhhhCHHHHHHHHHHHHHHHHHHHHhhhhc--CCccHHHHHHHHHHHHHHHHH-hCC
Confidence 999999999999999999999999999763 47999954 578999999998 984
No 61
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.36 E-value=3.9e-12 Score=94.82 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=91.7
Q ss_pred CCCCcHHHHHHHHhhCCeE-----EEecCCccEEEeccHHHHHHHHHhcCcccccCCCch------hH-H---H------
Q 041764 54 GDSPHVSLQHLSNDYGPLM-----FLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY------AA-K---K------ 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~-----~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~------~~-~---~------ 112 (175)
..+++.++.+++ +||||+ ++++ .+.++++||+++++++.++ ..|++++... .. . .
T Consensus 24 ~~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (414)
T 2uuq_A 24 WPNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVMQ 99 (414)
T ss_dssp TTCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGGC
T ss_pred ccCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccccccC
Confidence 357888888885 689999 7776 6899999999999999876 4566554221 11 0 1
Q ss_pred ------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchH-HHHHHHHHHHHHHHhcCC
Q 041764 113 ------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLS-RLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 ------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+. +++|+. +.+..+++|+++. +||.
T Consensus 100 ~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--~~vdl~~~~~~~~~~~vi~~-~~G~ 165 (414)
T 2uuq_A 100 DPPVHTEFRKLV-SRGFTPRQVETVEPTVRKFVVERLEKLRAN--GGGDIVTELFKPLPSMVVAH-YLGV 165 (414)
T ss_dssp CTTHHHHHHHHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHT--TEEEHHHHTTTHHHHHHHHH-HTTC
T ss_pred CchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHhHHHHHHH-HhCC
Confidence 678887 999999999999999999999999999874 469997 5568999999999 6884
No 62
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.35 E-value=1.4e-12 Score=97.31 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=91.0
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCC--ccEEEeccHHHHHHHHHhcCcccccCCCc-------------h----hHHH--
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGS--VPTLVISSADVAREIFRTHDLIFSGRPRS-------------Y----AAKK-- 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~--~~~v~i~~p~~~~~il~~~~~~~~~~~~~-------------~----~~~~-- 112 (175)
..+++..+.++++ ||||+++...| .+.+++++|+++++++.+. +.|++++.. . ....
T Consensus 36 ~~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~l~~~dg~~ 113 (415)
T 3mgx_A 36 TLERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAPS-APLTSEYGMMIGFDRDHPDNSGGRMMVVSEHEQ 113 (415)
T ss_dssp STTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCTT-SSEECTTCSSTTCCSSSCCTTTTTSGGGCCHHH
T ss_pred cCChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhCh-hhhcCCccccccccccccccccCCCccccCcHH
Confidence 3578889988887 89999997445 7899999999999999654 345543211 0 0000
Q ss_pred --HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcC
Q 041764 113 --AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFG 174 (175)
Q Consensus 113 --~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG 174 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+. +++|+.+++ ..+++++|+. +||
T Consensus 114 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--~~~dl~~~~~~~~~~~vi~~-l~G 174 (415)
T 3mgx_A 114 HRKLRKLV-GPLLSRAAARKLAERVRIEVGDVLGRVLDG--EVCDAATAIGPRIPAAVVCE-ILG 174 (415)
T ss_dssp HHHHHHHH-GGGSSHHHHHHSHHHHHHHHHHHTTTSSSS--SCEESTTTTTTHHHHHHHHH-HHT
T ss_pred HHHHHHHh-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHH-HcC
Confidence 778887 999999999999999999999999988763 468998877 6799999998 477
No 63
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.33 E-value=5.9e-12 Score=93.36 Aligned_cols=112 Identities=18% Similarity=0.255 Sum_probs=83.7
Q ss_pred HHHHHHHHhhCCeEEEecC-Cc---cEEEeccHHHHHHHHHhcCcccccCCC------c---hhH------H------H-
Q 041764 59 VSLQHLSNDYGPLMFLQLG-SV---PTLVISSADVAREIFRTHDLIFSGRPR------S---YAA------K------K- 112 (175)
Q Consensus 59 ~~~~~~~~~yg~i~~~~~~-~~---~~v~i~~p~~~~~il~~~~~~~~~~~~------~---~~~------~------~- 112 (175)
..+.+++++ |||+++.++ +. +.++++||+++++++.++. .|++++. . ... . .
T Consensus 17 ~~~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 94 (398)
T 1lfk_A 17 DPADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDHQ-QFSTRRRWDPRDEIGGKGIFRPRELVGNLMDYDPP 94 (398)
T ss_dssp EECHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCTT-TEEECTTCCC-------------CCTTCGGGCCTT
T ss_pred ChhHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhCc-ccccccccccccccCCcccccccccccCccccCCH
Confidence 344567776 999999875 55 8999999999999993322 3544432 0 000 0 0
Q ss_pred ---HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH-HHHHHHHHHhcCC
Q 041764 113 ---AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLL-LSNNIVCRVAFGQ 175 (175)
Q Consensus 113 ---~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+. ++++|+.+.+.. +++++++. +||.
T Consensus 95 ~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~d~~~~~~~~~~~~vi~~-~~G~ 158 (398)
T 1lfk_A 95 EHTRLRRKL-TPGFTLRKMQRMAPYIEQIVNDRLDEMERA-GSPADLIAFVADKVPGAVLCE-LVGV 158 (398)
T ss_dssp HHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHH-CSSEEHHHHTTTTHHHHHHHH-HHTC
T ss_pred HHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHH-HcCC
Confidence 778877 999999999999999999999999999753 567999999986 99999998 5774
No 64
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.30 E-value=1.2e-11 Score=91.54 Aligned_cols=111 Identities=15% Similarity=0.113 Sum_probs=87.9
Q ss_pred CCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCc----------hh-HH-H----------
Q 041764 55 DSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRS----------YA-AK-K---------- 112 (175)
Q Consensus 55 ~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~----------~~-~~-~---------- 112 (175)
.+++.++.++ ++||||++ + +.+.+++++|+++++++.++ .|++++.. .. .. .
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 86 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGDE--RFARTGIRRFWTDLVGPGLLAEIVGDIILFQDEPD 86 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTCT--TEESHHHHHHHHHHHCSSHHHHHHTTCGGGCCTTH
T ss_pred cCchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcCC--CcccCcccccccccccccccccccccccccCCchh
Confidence 4678888776 58999998 6 68899999999999999762 45543211 00 00 1
Q ss_pred --HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHH-HHHHHHHHHHHHhcCC
Q 041764 113 --AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRL-TLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 --~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.|.+ ++++|+.+. ...+++|+++.+ ||.
T Consensus 87 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~dl~~~~~~~~~~~vi~~~-~G~ 148 (397)
T 3buj_A 87 HGRLRGVV-GPAFSPSALRRLEPVIAGTVDDLLRPALA--RGAMDVVDELAYPLALRAVLGL-LGL 148 (397)
T ss_dssp HHHHHHHH-GGGSSTTTTGGGHHHHHHHHHHHHHHHHT--TTEEEHHHHTHHHHHHHHHHHH-HTC
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHhh--cCCeehHHHHHHHhHHHHHHHH-hCC
Confidence 678877 99999999999999999999999999986 357998755 578999999998 884
No 65
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.30 E-value=1.2e-11 Score=91.60 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=90.3
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchh---HH----------H----HhHh
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYA---AK----------K----AVRK 116 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~---~~----------~----~~Rr 116 (175)
..+++.++.+++++ |||+++..++ +.++++||+++++++.+. +.|++++.... .. . ++||
T Consensus 23 ~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~g~~h~~~R~ 99 (396)
T 3oft_A 23 EQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGDA-ERLSSQCLAVTPGLGKVMQFIPLQQDGAEHKAFRT 99 (396)
T ss_dssp TTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHCT-TTEESTTCCSSTTHHHHHCCTTTTCCHHHHHHHHH
T ss_pred hcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcCc-ccccCCcccCCCccccccccCccccCCcHHHHHHH
Confidence 56899999999998 9999998874 589999999999999665 45665442110 00 0 7788
Q ss_pred HHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcC
Q 041764 117 IVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFG 174 (175)
Q Consensus 117 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG 174 (175)
.+ ++.|+.++++.+.+.+.++++++++.|.+. +.+|+...+ ..++.++++. +||
T Consensus 100 ~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~--~~~d~~~~~~~~~~~~v~~~-~~G 154 (396)
T 3oft_A 100 PV-MKGLASRFVVALEPKVQAVARKLMESLRPR--GSCDFVSDFAEILPLNIFLT-LID 154 (396)
T ss_dssp HH-HHHTCHHHHHHHHHHHHHHHHHHHHHHGGG--SEEEHHHHTTTTHHHHHHHH-HTT
T ss_pred Hh-hhhhCHHHHHHHHHHHHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHHHHH-HcC
Confidence 87 999999999999999999999999999864 468877665 6678888776 566
No 66
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.30 E-value=1.1e-11 Score=92.46 Aligned_cols=115 Identities=12% Similarity=0.158 Sum_probs=88.9
Q ss_pred CCCCcHHHHHHHHhhC-CeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchhH---H----H----------HhH
Q 041764 54 GDSPHVSLQHLSNDYG-PLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYAA---K----K----------AVR 115 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg-~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~---~----~----------~~R 115 (175)
..+++.++.++++++| ||+++..++ +.++++||+++++++.+ ...|++++..... . . ++|
T Consensus 37 ~~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~~~~~~~dg~~h~~~R 114 (421)
T 3lxh_A 37 EQGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYRS-PERFSSRVIWVPREAGEAYDMVPTKLDPPEHTPYR 114 (421)
T ss_dssp GGCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHTC-TTTEETTCCSSSHHHHHHCCCTTTTCCTTTHHHHH
T ss_pred hcChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHcC-hhhccCCcccCCcccccccccCCccCCcHHHHHHH
Confidence 3578888988887655 899998766 58999999999999954 3466655421110 0 0 778
Q ss_pred hHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcC
Q 041764 116 KIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFG 174 (175)
Q Consensus 116 r~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG 174 (175)
|.+ ++.|+.++++.+.+.+.++++++++.|.+ ++++|+...+ ..++.++++.+ ||
T Consensus 115 ~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~~v~~~~-~G 170 (421)
T 3lxh_A 115 KAI-DKGLNLAEIRKLEDQIRTIAVEIIEGFAD--RGHCEFGSEFSTVFPVRVFLAL-AG 170 (421)
T ss_dssp HHH-HHHHSHHHHHTTHHHHHHHHHHHHHTTTT--TSEEEHHHHTTTTHHHHHHHHH-HT
T ss_pred HHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHhh--cCCeehHHHHHHHHHHHHHHHH-cC
Confidence 887 99999999999999999999999999975 3568876555 66888888764 66
No 67
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.28 E-value=1.7e-11 Score=90.00 Aligned_cols=107 Identities=15% Similarity=0.243 Sum_probs=85.0
Q ss_pred cHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCC-----ch-----h---H--H-H---------
Q 041764 58 HVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPR-----SY-----A---A--K-K--------- 112 (175)
Q Consensus 58 ~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~-----~~-----~---~--~-~--------- 112 (175)
+..+.++ ++||||+++ + +.+++++|+++++++.+.. .|++++. .. . . . .
T Consensus 2 ~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 75 (368)
T 1io7_A 2 YDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNFS-KFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPPL 75 (368)
T ss_dssp HHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCTT-TEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCCTTH
T ss_pred CHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCcc-cccccccccccccccccccccccccccccccccCCChH
Confidence 4566777 489999987 3 5899999999999998753 5655542 11 0 0 1 1
Q ss_pred --HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 113 --AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 --~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.| + ++++|+.+.+ ..+++|+++.+ ||.
T Consensus 76 h~~~R~~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l-~--~g~~d~~~~~~~~~~~~vi~~~-~G~ 136 (368)
T 1io7_A 76 HDELRSMS-ADIFSPQKLQTLETFIRETTRSLLDSI-D--PREDDIVKKLAVPLPIIVISKI-LGL 136 (368)
T ss_dssp HHHHHGGG-TTTTCHHHHHHHHHHHHHHHHHHHHTC-C--TTSEEHHHHTTTHHHHHHHHHH-HTC
T ss_pred HHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHh-h--cCCccHHHHHHHHHHHHHHHHH-hCC
Confidence 678877 999999999999999999999999999 4 2479999877 78999999999 884
No 68
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.26 E-value=3.6e-12 Score=95.75 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=87.9
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchh------------HHH----HhHhH
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYA------------AKK----AVRKI 117 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~------------~~~----~~Rr~ 117 (175)
..+++.++.++ ++||||+++..++ .+++++|+++++++.++.. |++++.... ... ++||.
T Consensus 52 ~~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~~-f~~~~~~~~~~~~~~~~~l~~~dg~~h~~~Rr~ 127 (441)
T 3nc3_A 52 QNNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPDI-FTTKSLVERAEPVMRGPVLAQMHGKEHSAKRRI 127 (441)
T ss_dssp HHCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTTT-EECCCTTSCCCCSCC-------------CCHHH
T ss_pred hcChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCccc-ccccccccccccccCCCccccCCcHHHHHHHHH
Confidence 35777888776 5899999987655 8999999999999987653 654332110 001 77888
Q ss_pred HHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchH-HHHHHHHHHHHHHHhcCC
Q 041764 118 VIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLS-RLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 118 ~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~i~~~~fG~ 175 (175)
+ ++.|+.++++.+.+.+.++++++++.|.+ ++++|+. +....+++++++. +||.
T Consensus 128 ~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~dl~~~~~~~~~~~vi~~-l~G~ 182 (441)
T 3nc3_A 128 V-VRSFIGDALDHLSPLIKQNAENLLAPYLE--RGKSDLVNDFGKTFAVCVTMD-MLGL 182 (441)
T ss_dssp H-HHHHHHTHHHHHHHHHHHHHHHHHTTTTT--TTEEECCCCCHHHHHHHHHHH-HTTC
T ss_pred H-HhhcCHHHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHH-HcCC
Confidence 7 99999999999999999999999999875 3568864 4556799999998 4773
No 69
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.26 E-value=4.9e-11 Score=88.86 Aligned_cols=112 Identities=18% Similarity=0.252 Sum_probs=88.1
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchh-------------------H--HH
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYA-------------------A--KK 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~-------------------~--~~ 112 (175)
..+++.++.++ ++||||+++.+| .+++++|+++++++.+.. .+++++.... . ..
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg 102 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHPS-SCSDRTKSTIFQRQLAAETQPRPQGPASFLFLDP 102 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCTT-EECCGGGCHHHHHHHC---------CCCGGGCCT
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCcc-cccCcccccccccccccccccccccccchhhcCC
Confidence 67899999888 578999998765 899999999999997643 3333332110 0 00
Q ss_pred ----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 113 ----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 ----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++.+.+.+.++++++++ +.+ ++++|+.+.+ ..+++++++. +||.
T Consensus 103 ~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~-l~~--~~~~d~~~~~~~~~~~~vi~~-~~G~ 165 (418)
T 3r9b_A 103 PDHTRLRGLV-SKAFAPRVIKRLEPEITALVDQLLD-AVD--GPEFNLIDNLAYPLPVAVICR-LLGV 165 (418)
T ss_dssp THHHHHHHHH-HGGGSHHHHGGGHHHHHHHHHHHHH-TCC--SSEEEHHHHTTTHHHHHHHHH-HHTC
T ss_pred chHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHh-hhc--cCCeehHHHHhCcCCHHHHHH-HcCC
Confidence 778888 9999999999999999999999999 764 3578976555 6899999999 7873
No 70
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.23 E-value=5.9e-11 Score=88.76 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=90.3
Q ss_pred CCCCcHHHHHHHHhhCCeEEEec-CCccEEEeccHHHHHHHHHhcCcccccCC-----Cchh--------------HHH-
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQL-GSVPTLVISSADVAREIFRTHDLIFSGRP-----RSYA--------------AKK- 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~p~~~~~il~~~~~~~~~~~-----~~~~--------------~~~- 112 (175)
..+++..+.+++++ |||+++.. ++.+.+++++++++++++.+.. .|++++ .... ...
T Consensus 37 ~~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~~-~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (426)
T 3rwl_A 37 NDSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNHD-IFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAM 114 (426)
T ss_dssp TTCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCTT-TEECCGGGTCSSSSCCC-------CCCCCGGGC
T ss_pred cCCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCCc-ccccccccCCCCcccccccccccccccCccccc
Confidence 35688888899876 99999987 4578999999999999998763 344322 0000 000
Q ss_pred ------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcC
Q 041764 113 ------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFG 174 (175)
Q Consensus 113 ------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG 174 (175)
++||.+ ++.|+.++++.+.+.+.+.++++++.|.. ++++|+.+.+ ..+++++++. +||
T Consensus 115 dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~dl~~~~~~~~~~~vi~~-l~G 179 (426)
T 3rwl_A 115 DRPRHDEQRKAV-SPIVAPANLAALEGTIRERVSKTLDGLPV--GEEFDWVDRVSIEITTQMLAT-LFD 179 (426)
T ss_dssp CTTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHTSCS--SSCEEHHHHTHHHHHHHHHHH-HHT
T ss_pred CchHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhhc--CCCcchHHHHHHHHHHHHHHH-HcC
Confidence 778887 99999999999999999999999999854 5789977766 7899999887 777
No 71
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.18 E-value=5.5e-11 Score=86.47 Aligned_cols=97 Identities=16% Similarity=0.269 Sum_probs=77.9
Q ss_pred HhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCC-ch--h----H---HH----HhHhHHHhhccChhHHhhH
Q 041764 66 NDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPR-SY--A----A---KK----AVRKIVIMEILSSKRVQSF 131 (175)
Q Consensus 66 ~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~-~~--~----~---~~----~~Rr~~~~~~f~~~~l~~~ 131 (175)
++||||+++ | .+++++|+++++++.++. .|++++. .. . . .. ++||.+ ++.|+.++++.+
T Consensus 2 r~~gpv~~~---g--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~l~~~~g~~~~~~R~~~-~~~fs~~~l~~~ 74 (343)
T 2rfb_A 2 RLNDPVHYD---G--AWHVYKYSDVKHVLMNDK-IFSSNPGNRYSNAGGISFITMDNPEHKEFRDIS-APYFLPSKINDY 74 (343)
T ss_dssp -CCCCEEET---T--EEEECSHHHHHHHHHCTT-TEESSCSSCCC---CCGGGGCCHHHHHHHHHHH-HHHHSHHHHGGG
T ss_pred CCcCCeeee---C--eEEEcCHHHHHHHHhChh-hcccCCcCCCCCccccccccCCchHHHHHHHHh-hhhcCHHHHHHH
Confidence 579999986 3 899999999999998763 5665541 10 0 0 00 678877 999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 132 QAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
.+.+.++++++++.|. ++|+.+.+ ..+++|+++.+ ||.
T Consensus 75 ~~~i~~~~~~l~~~l~-----~~d~~~~~~~~~~~~vi~~~-~G~ 113 (343)
T 2rfb_A 75 KDFIEETSNDLIKNID-----NKDIISEYAVRLPVNIISKI-LGI 113 (343)
T ss_dssp HHHHHHHHHHHHTTCT-----TSCHHHHTTTHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHHHHhcc-----ccCHHHHHhhhhhHHHHHHH-cCC
Confidence 9999999999998876 68998865 89999999998 884
No 72
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.09 E-value=2.4e-10 Score=83.83 Aligned_cols=104 Identities=10% Similarity=0.135 Sum_probs=80.6
Q ss_pred cHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCC--C---c-------hh-H----HH--------
Q 041764 58 HVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRP--R---S-------YA-A----KK-------- 112 (175)
Q Consensus 58 ~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~--~---~-------~~-~----~~-------- 112 (175)
+..+.+++ +||||+++. | .+++++|+++++++.+++ .|++++ . . .. . ..
T Consensus 2 ~~~~~~lr-~~gpv~~~~-g---~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~ 75 (367)
T 3b4x_A 2 YDWFKQMR-KESPVYYDG-K---VWNLFKYEDCKMVLNDHK-RFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTSDPPL 75 (367)
T ss_dssp HHHHHHHH-HHCSEEECS-S---SEEECSHHHHHHHHHCTT-TEECCCSSTTTTHHHHHHTCCCCCCGGGSSGGGCCTTH
T ss_pred CHHHHHHH-HcCCceeeC-C---EEEEecHHHHHHHHcCch-hhccCcccccccccccccccchhhcccccccccCCchh
Confidence 45666774 799999987 3 899999999999998763 455442 1 0 00 0 11
Q ss_pred --HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcCC
Q 041764 113 --AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFGQ 175 (175)
Q Consensus 113 --~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~ 175 (175)
++||.+ ++.|+.++++. +.+.++++++++.|. | ++|+.+.+ ..+++|+|+. +||.
T Consensus 76 h~~~R~~~-~~~fs~~~l~~--~~i~~~~~~l~~~l~---g-~~d~~~~~~~~~~~~vi~~-~~G~ 133 (367)
T 3b4x_A 76 HDELRNLT-ADAFNPSNLPV--DFVREVTVKLLSELD---E-EFDVIESFAIPLPILVISK-MLGI 133 (367)
T ss_dssp HHHHHHTT-GGGGSGGGSCH--HHHHHHHHHHHHTCC---S-EEEHHHHTTTHHHHHHHHH-HHTC
T ss_pred HHHHHHHH-HHhcCHhhhcc--hHHHHHHHHHHHhcc---C-CcchHHHHHHhhHHHHHHH-HcCC
Confidence 778877 99999999988 999999999999887 3 39999765 8999999999 7884
No 73
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.07 E-value=2.4e-10 Score=85.22 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=84.7
Q ss_pred CCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCC--------CchhH---HH----------
Q 041764 54 GDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRP--------RSYAA---KK---------- 112 (175)
Q Consensus 54 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~--------~~~~~---~~---------- 112 (175)
..+++.+ ++.++|||++++.+++.. +++++++++++++.++...+..+. ..... ..
T Consensus 32 ~~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 108 (416)
T 3p3o_A 32 PNFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMVDFLQSLDGADH 108 (416)
T ss_dssp TTCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTTEECSHHHHHHHHTCCSSHHHHHHHHSGGGCCHHHH
T ss_pred ccCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcccccCCccccccccccccchhhhhcCccccCCchHH
Confidence 4567777 444579999999887666 999999999999987642222110 00000 00
Q ss_pred -HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHHhcC
Q 041764 113 -AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRVAFG 174 (175)
Q Consensus 113 -~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG 174 (175)
++||.+ ++.|+.++++.+.+.+.++++++++.| . ++++|+...+ ..+++++++.+ ||
T Consensus 109 ~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l-~--~g~~d~~~~~~~~~~~~vi~~l-~G 167 (416)
T 3p3o_A 109 RRLRGLA-THPFTPRRITAVQPFVRSTVEQLIDKL-P--QGDFDFVQHFPHPLPALVMCQL-LG 167 (416)
T ss_dssp HHHHHTT-CGGGSHHHHHHHHHHHHHHHHHHHHTC-C--SSSEEHHHHTTTHHHHHHHHHH-HT
T ss_pred HHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhh-c--cCCccHHHHHHHHHHHHHHHHH-hC
Confidence 778888 999999999999999999999999999 4 3459965554 67999999984 77
No 74
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.06 E-value=2.9e-10 Score=84.17 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=87.8
Q ss_pred CCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCC----ch--h-HH--H--------HhHhH
Q 041764 55 DSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPR----SY--A-AK--K--------AVRKI 117 (175)
Q Consensus 55 ~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~----~~--~-~~--~--------~~Rr~ 117 (175)
.+++..+.+++++ |||+++..| .+++++++.+++++.+. .|+.++. .. . .. . ++||.
T Consensus 20 ~dp~~~~~~lr~~-~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~~~~~l~~~dg~~h~~~R~~ 93 (394)
T 2wiy_A 20 NNPYPWYRRLQQD-HPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAVASDTALGSDPPHHTVLRRQ 93 (394)
T ss_dssp HCCHHHHHHHHHH-CSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGGGGGSGGGCCTTHHHHHHHH
T ss_pred cCccHHHHHHHhc-CCeEEecCC---eEEEcCHHHHHHHHcCC--CccccccccccccchhcccccccCCchHHHHHHHH
Confidence 4788888888764 899987643 69999999999999654 3332110 00 0 00 0 77888
Q ss_pred HHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcCC
Q 041764 118 VIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLTLLLSNNIVCRVAFGQ 175 (175)
Q Consensus 118 ~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~ 175 (175)
+ ++.|+.++++.+.+.+.+.++++++.|.. ++++|+.+.+..+++++++..+||.
T Consensus 94 ~-~~~fs~~~~~~~~~~i~~~~~~l~~~~~~--~~~~d~~~~~~~~~~~vi~~~~~G~ 148 (394)
T 2wiy_A 94 T-NKWFTPKLVDGWVRTTRELVGDLLDGVEA--GQVIEARRDLAVVPTHVTMARVLQL 148 (394)
T ss_dssp H-HTTCSHHHHHHHTHHHHHHHHHHHHTCCT--TCCEEHHHHHTHHHHHHHHHHHHTC
T ss_pred H-HhccCHHHHHHHHHHHHHHHHHHHHHHhc--cCCeeHHHHHHhhhHHHHHHHHcCC
Confidence 7 99999999999999999999999998864 5679999999999999999999983
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=98.98 E-value=1e-09 Score=81.69 Aligned_cols=125 Identities=13% Similarity=0.124 Sum_probs=88.7
Q ss_pred CCCcccc---ccccCCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCc-----------
Q 041764 42 KLPVLGN---LHQLNGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRS----------- 107 (175)
Q Consensus 42 ~~p~~G~---~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~----------- 107 (175)
++|.+|- ..++ ..+++.++.++++ +|||++. .+.+.+++++++++++++.+.. .|++....
T Consensus 19 ~~P~~~~dp~~~~~-~~dP~~~~~~lR~-~gPV~~~--~~~~~~~vt~~~~v~~vl~d~~-~fs~~~~~~~~~~~~~~~~ 93 (412)
T 4dnj_A 19 GVPHLGIDPFALDY-FADPYPEQETLRE-AGPVVYL--DKWNVYGVARYAEVYAVLNDPL-TFCSSRGVGLSDFKKEKPW 93 (412)
T ss_dssp TSCEECCCTTSHHH-HHSCHHHHHHHHH-HCSSEEE--TTTTEEEECSHHHHHHHHTCTT-TEESTTCSSSSCTTTSCCS
T ss_pred CCCccCCCCCCHHH-HhCcHHHHHHHHh-cCCEEEE--CCCCEEEECCHHHHHHHHcCCc-cccCCCccccccccccccc
Confidence 4666651 2233 4678888888875 6999765 4567899999999999997643 23221100
Q ss_pred ------hhHHH----HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHHHHHHHhc
Q 041764 108 ------YAAKK----AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDL-SRLTLLLSNNIVCRVAF 173 (175)
Q Consensus 108 ------~~~~~----~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~i~~~~f 173 (175)
...+. ++||.+ ++.|+.++++.+.+.+.+.++++++++.+. ++++|+ .+....+++++++.+..
T Consensus 94 ~~~~~~~~~Dg~~H~r~R~~~-~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~-~~~~D~v~~~~~~~~~~~i~~l~g 168 (412)
T 4dnj_A 94 RPPSLILEADPPAHTRTRAVL-SKVLSPATMKRLRDGFAAAADAKIDELLAR-GGNIDAIADLAEAYPLSVFPDAMG 168 (412)
T ss_dssp SCCCTTTTCCTTHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEETCCCCCCHHHHHHHHHHHT
T ss_pred cCCCccccCChHHHHHHHhhc-ccccCHHHHHHhhHHHHHHHHHHHHhhhcc-CCCceeHHHHHhhhhHhHHHHHcC
Confidence 00000 778877 999999999999999999999999999765 345664 45567788888887643
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=98.58 E-value=3.2e-07 Score=68.46 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=79.0
Q ss_pred CCCcHHHHHHHHhhC-CeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCchh-------------HHH----HhHh
Q 041764 55 DSPHVSLQHLSNDYG-PLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSYA-------------AKK----AVRK 116 (175)
Q Consensus 55 ~~~~~~~~~~~~~yg-~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~-------------~~~----~~Rr 116 (175)
.+++..+.++++..+ +++....+ ...+++++++++++++.+.. .|++...... .+. ++||
T Consensus 37 ~~~~~~~~~lr~~~~~~~~~~~~~-gg~W~vtr~~dv~~vl~d~~-~fs~~~~~~~~~~~~~~~~~~~~~D~p~H~r~Rr 114 (417)
T 4dxy_A 37 DGYHEAWKKVQHPGIPDLIWTPFT-GGHWIATNGDTVKEVYSDPT-RFSSEVIFLPKEAGEKAQMVPTKMDPPEHTPYRK 114 (417)
T ss_dssp GCHHHHHHHHSCTTCCSEEEESST-TSEEEECSHHHHHHHHTCTT-TEESSCCSSSTTSSCSSCTTTTTCCTTTHHHHHH
T ss_pred cChHHHHHHHHhhCCCCEEecCCC-CCEEEECCHHHHHHHHcCch-hccCCCcccccccccccccCcccCCcHHHHHHHH
Confidence 456677777766543 46555443 35789999999999997643 3443211100 000 6788
Q ss_pred HHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHHHH
Q 041764 117 IVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVCRV 171 (175)
Q Consensus 117 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~ 171 (175)
.+ ++.|+.++++.+.+.+++.++++++.+.+. +++|+...+ ..+++.+++.+
T Consensus 115 ll-~~~Fs~~~l~~~~~~i~~~~~~lld~l~~~--g~~D~v~~~a~~l~~~vi~~l 167 (417)
T 4dxy_A 115 AL-DKGLNLAKIRKVEDKVREVASSLIDSFAAR--GECDFAAEYAELFPVHVFMAL 167 (417)
T ss_dssp HH-HHHHCHHHHHTTHHHHHHHHHHHHHHHHTT--SEEEHHHHTTTTHHHHHHHHH
T ss_pred Hh-hhhcCHHHHHHHHHHHHHHHHHHHHHhhhc--CCeeeHHHHHhhhHHHHHHHH
Confidence 77 999999999999999999999999999874 567865544 66777777664
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.09 E-value=2.9e-08 Score=73.15 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=76.6
Q ss_pred CCCC-CCCCCcccccccc----CCCCCcHHHHHHHHhhCCeEEEecCCccEEEeccHHHHHHHHHhcCcccccCCCch--
Q 041764 36 LPPG-PWKLPVLGNLHQL----NGDSPHVSLQHLSNDYGPLMFLQLGSVPTLVISSADVAREIFRTHDLIFSGRPRSY-- 108 (175)
Q Consensus 36 ~~pg-p~~~p~~G~~~~~----~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~-- 108 (175)
.||| ++++|++|+...+ ...+++.++.+++++ ||++.. .+.+++++++.+++++.+. .|++++...
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d~--~f~~~~~~~~~ 107 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDDP--AFTRATGRTPE 107 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHCS--SEESSCCCCCH
T ss_pred CCCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcCC--CcCCCcccccc
Confidence 4666 4468999976431 156889999998876 998764 4689999999999999863 465543211
Q ss_pred h-------HH----H-------HhHhHHHhhccChhHHhhHHHHHHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHHHH
Q 041764 109 A-------AK----K-------AVRKIVIMEILSSKRVQSFQAVRYEEVMLVLQFIAQSSTKPIDLSRLT-LLLSNNIVC 169 (175)
Q Consensus 109 ~-------~~----~-------~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~ 169 (175)
. .. . .+ ++.|+ . .+.+++.++++++.|. +++|+.+.+ ..+++++|+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~dg~~H-----~~~Ft-----~-~~~i~~~~~~ll~~~~----g~~Dl~~~~a~~l~~~vi~ 172 (381)
T 2yjn_B 108 WMRAAGAPPAEWAQPFRDVHAASW-----EGEVP-----D-VGELAESFAGLLPGAG----ARLDLVGDFAWQVPVQGMT 172 (381)
T ss_dssp HHHHHTCCHHHHTHHHHHHHHCCC-----CSCCC-----C-CSCHHHHTSTTSCC----------CCCCCCTHHHHHHHH
T ss_pred cccccccccchhhhhhhhCCchhh-----hhccC-----C-hHHHHHHHHHHHHhcc----CcchHHHHHHHHHHHHHHH
Confidence 0 00 0 22 45666 3 6788888888888886 358888665 799999999
Q ss_pred HHhcCC
Q 041764 170 RVAFGQ 175 (175)
Q Consensus 170 ~~~fG~ 175 (175)
++ ||.
T Consensus 173 ~l-~G~ 177 (381)
T 2yjn_B 173 AV-LGA 177 (381)
T ss_dssp TC----
T ss_pred HH-cCC
Confidence 95 873
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.26 E-value=11 Score=21.71 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=38.5
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC--------CccEEEeccHHHHHHHHHhcCcccccCC
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG--------SVPTLVISSADVAREIFRTHDLIFSGRP 105 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~p~~~~~il~~~~~~~~~~~ 105 (175)
++|++.. .-....+.++..+||+|..+.+. |.-.|...+++.++.++..+...+..+.
T Consensus 15 fV~~Lp~---~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~ 80 (103)
T 1s79_A 15 YIKGFPT---DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 80 (103)
T ss_dssp EEECCCT---TCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTT
T ss_pred EEECCCC---CCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEE
Confidence 4455542 23345677888899998877763 3456777899999999875444454444
No 79
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=67.27 E-value=12 Score=19.65 Aligned_cols=46 Identities=9% Similarity=0.202 Sum_probs=32.3
Q ss_pred CcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHhcCcccc
Q 041764 57 PHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRTHDLIFS 102 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~~~~~~~ 102 (175)
....+.++..+||+|..+.+. +.-.+-..+++.++..+..+...+.
T Consensus 12 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~ 66 (75)
T 1iqt_A 12 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 66 (75)
T ss_dssp CHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBT
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeEC
Confidence 345677888899998887763 2345667899999998865444443
No 80
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=66.03 E-value=13 Score=19.89 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=29.9
Q ss_pred cHHHHHHHHhhCCeEEEecC-------CccEEEeccHHHHHHHHHh
Q 041764 58 HVSLQHLSNDYGPLMFLQLG-------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 58 ~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~p~~~~~il~~ 96 (175)
...+.+...+||+|..+.+. |.-.|-..+++.++..+..
T Consensus 21 ~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 21 KNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp HHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred HHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 36677888899999888775 3346667899999888864
No 81
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=64.00 E-value=18 Score=20.64 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=36.3
Q ss_pred CccccccccCCCC----CcHHHHHHHHhhCCeEEEecC-------CccEEEeccHHHHHHHHHh
Q 041764 44 PVLGNLHQLNGDS----PHVSLQHLSNDYGPLMFLQLG-------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 44 p~~G~~~~~~~~~----~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~p~~~~~il~~ 96 (175)
=++||+..- ..+ ....+.++..+||+|..+.+. |.-.|-..+++.++..+..
T Consensus 18 l~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 18 IVVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp EEEESCCCC-CTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred EEEeCCCcc-hhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 356777643 222 346678888999999888875 3456677888888888864
No 82
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=59.22 E-value=8.4 Score=22.41 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=34.6
Q ss_pred cHHHHHHHHhhCCeEEEecCC-ccEEEeccHHHHHHHHHh--cCcccccCCC
Q 041764 58 HVSLQHLSNDYGPLMFLQLGS-VPTLVISSADVAREIFRT--HDLIFSGRPR 106 (175)
Q Consensus 58 ~~~~~~~~~~yg~i~~~~~~~-~~~v~i~~p~~~~~il~~--~~~~~~~~~~ 106 (175)
..-+.++...||.+.--|+-. .-.+++++|+.+++++.. ....|..+.+
T Consensus 19 t~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~ty 70 (101)
T 3ctr_A 19 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQTY 70 (101)
T ss_dssp HHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCCH
T ss_pred hHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEEh
Confidence 455677778888776667744 678889999999999973 3444554443
No 83
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=56.35 E-value=27 Score=20.28 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=35.4
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC--CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG--SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--~~~~v~i~~p~~~~~il~~ 96 (175)
++||+..- -....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 20 ~V~nLp~~---~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 20 VVSGLPPS---GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp EEEECCSS---CCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 45776532 2345678888999999888764 4566777899999888864
No 84
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.05 E-value=28 Score=20.03 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=36.5
Q ss_pred ccccccccCCC-CCcHHHHHHHHhhC-CeEEEecCCccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGD-SPHVSLQHLSNDYG-PLMFLQLGSVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~-~~~~~~~~~~~~yg-~i~~~~~~~~~~v~i~~p~~~~~il~~ 96 (175)
+++|+..-... ....-++++..+|| .|..+ .+|.-.|...+.+.++..+.+
T Consensus 13 YV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~ 65 (96)
T 2diu_A 13 YVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKR 65 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHH
Confidence 36777653111 12234678889995 99888 458899999999999988864
No 85
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=52.60 E-value=23 Score=18.40 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=30.9
Q ss_pred CcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHhcCcccc
Q 041764 57 PHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRTHDLIFS 102 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~ 102 (175)
....+.++..+||+|..+.+.. .-.|-..+++.++.++.-+...+.
T Consensus 12 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~ 66 (75)
T 2mss_A 12 TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEIN 66 (75)
T ss_dssp CHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSS
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEEC
Confidence 3456778888999988877642 234566789999888753333343
No 86
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.52 E-value=31 Score=19.70 Aligned_cols=49 Identities=10% Similarity=0.134 Sum_probs=35.5
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC--CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG--SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--~~~~v~i~~p~~~~~il~~ 96 (175)
++||+.. .-....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 19 ~V~nLp~---~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 19 VVSGLPP---SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEESCCS---SCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 4566643 23456678888999998877764 5667777899999888864
No 87
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=50.13 E-value=30 Score=18.99 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=33.3
Q ss_pred CccccccccCCCCCcHHHHHHHHhhCCeEEEecC----CccEEEeccHHHHHHH
Q 041764 44 PVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG----SVPTLVISSADVAREI 93 (175)
Q Consensus 44 p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~----~~~~v~i~~p~~~~~i 93 (175)
=++|++.. .-....+.+...+||+|..+.+. |--.|-..+++.++.+
T Consensus 14 l~V~~Lp~---~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 14 VFVGRCTE---DMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp EEEESCCT---TCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 35566543 23446678888999999988875 4556777899988854
No 88
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=49.11 E-value=30 Score=18.62 Aligned_cols=52 Identities=10% Similarity=0.206 Sum_probs=34.4
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHhcCc
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRTHDL 99 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~ 99 (175)
++|++..- -....+.++..+||+|..+.+.. .-.|-..+++.++..+.....
T Consensus 15 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~ 75 (87)
T 3s7r_A 15 FVGGLSWD---TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEH 75 (87)
T ss_dssp EEECCCTT---CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCE
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCC
Confidence 45666432 34466788888999987776531 245667789999888865443
No 89
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=47.85 E-value=38 Score=19.44 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=40.8
Q ss_pred CCCCCCCCccccccccCCCCCcHHHHHHHHhhCCeEEEecC------CccEEEeccHHHHHHHHHh-cCccccc
Q 041764 37 PPGPWKLPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG------SVPTLVISSADVAREIFRT-HDLIFSG 103 (175)
Q Consensus 37 ~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~------~~~~v~i~~p~~~~~il~~-~~~~~~~ 103 (175)
||.+...=++||+..- -....+.++..+||+|..+.+. |.-.|-..+++.++..+.. ++..+..
T Consensus 4 ~~~~~~~l~V~nlp~~---~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYK---ITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp CTTCCSEEEEESCCTT---CCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCEEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4444444456776432 3345677888899999887762 2456777899988888763 3334443
No 90
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=46.32 E-value=30 Score=20.08 Aligned_cols=48 Identities=8% Similarity=0.107 Sum_probs=34.4
Q ss_pred CcHHHHHHHHhhCCeEEEecC-CccEEEeccHHHHHHHHH--hcCcccccC
Q 041764 57 PHVSLQHLSNDYGPLMFLQLG-SVPTLVISSADVAREIFR--THDLIFSGR 104 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~-~~~~v~i~~p~~~~~il~--~~~~~~~~~ 104 (175)
-..-+.++...||.+.--|+- ..-.+++.+|+.+++++. ++...|+.+
T Consensus 28 Kt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~k~~~y~i~ 78 (100)
T 1whv_A 28 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQ 78 (100)
T ss_dssp CHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHHHCCSSEEE
T ss_pred hhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEE
Confidence 345677888889977666664 467888999999999997 334445443
No 91
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=44.14 E-value=45 Score=19.26 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=33.8
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC-------ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS-------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~-------~~~v~i~~p~~~~~il~~ 96 (175)
++||+..- --...+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 9 fV~nLp~~---~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 9 FIKNLDKS---IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp EEESCCTT---CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EECCCCCC---CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 45665422 23466788889999988776531 246778899999888864
No 92
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=41.91 E-value=28 Score=20.03 Aligned_cols=49 Identities=8% Similarity=0.083 Sum_probs=32.2
Q ss_pred ccccccccCCCCCcHHHH---HHHHhhCCeEEEecCC------------ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQ---HLSNDYGPLMFLQLGS------------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~---~~~~~yg~i~~~~~~~------------~~~v~i~~p~~~~~il~~ 96 (175)
++|++..- -....+. ++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 19 ~V~nLp~~---~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 19 FVVGLSQR---LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp EEEEECTT---TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred EEECCCCC---CCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 55666532 2234455 7778899988776532 334567789999888865
No 93
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.56 E-value=45 Score=18.72 Aligned_cols=51 Identities=10% Similarity=0.214 Sum_probs=34.0
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHhcC
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRTHD 98 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~ 98 (175)
++|++.. .-....+.++..+||+|..+.+.. .-.|-..+++.++.++..+.
T Consensus 20 ~V~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~ 79 (105)
T 2dh8_A 20 FVGGLDW---STTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 79 (105)
T ss_dssp CCBSCCT---TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCS
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCC
Confidence 4455542 233466788888999987776532 24566789999988887643
No 94
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=40.50 E-value=48 Score=18.54 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=33.4
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC--------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG--------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~p~~~~~il~~ 96 (175)
++|++..- -....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 19 ~v~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 19 FVGMLNKQ---QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 45665432 3345678888899998877764 2345667899998888853
No 95
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=39.37 E-value=54 Score=18.77 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=30.3
Q ss_pred HHHHHHHHhhCCeEEEecCC-----------ccEEEeccHHHHHHHHHh-cCcccccC
Q 041764 59 VSLQHLSNDYGPLMFLQLGS-----------VPTLVISSADVAREIFRT-HDLIFSGR 104 (175)
Q Consensus 59 ~~~~~~~~~yg~i~~~~~~~-----------~~~v~i~~p~~~~~il~~-~~~~~~~~ 104 (175)
.-+.+...+||+|..+.+.. .-.|-..+++.++..... ++..|..|
T Consensus 30 ~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR 87 (105)
T 3v4m_A 30 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 87 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 34556677899999888742 235667789888877754 34445443
No 96
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=39.32 E-value=51 Score=18.49 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=32.8
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
++||+..- -....+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 23 fV~nLp~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 23 IVNYLPQN---MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 45555432 23466788889999988776531 135667899999888754
No 97
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=38.11 E-value=77 Score=20.16 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=33.6
Q ss_pred cccccccCCCCCcHHHHHHHHhhCCeEEEecC-----CccEEEeccHHHHHHHHHh
Q 041764 46 LGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG-----SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 46 ~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-----~~~~v~i~~p~~~~~il~~ 96 (175)
+||+.. .-....++++..+||.|-.+.+. +.-+|-..+++.+++....
T Consensus 51 VgNL~~---~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 51 VENLFY---PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp ECSCCS---CCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH
T ss_pred EeCcCC---CCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH
Confidence 566532 23346688899999998887763 2356777899988888764
No 98
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=37.87 E-value=60 Score=18.91 Aligned_cols=49 Identities=10% Similarity=0.243 Sum_probs=34.1
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 26 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 83 (126)
T 3ex7_B 26 FVTGVHE---EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 83 (126)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4455542 22346677888899999888763 2346778899999888854
No 99
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=37.40 E-value=59 Score=18.63 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=31.4
Q ss_pred CCcHHHHHHHHhhCCeEEEecC----------CccEEEeccHHHHHHHHHh-cCcccccC
Q 041764 56 SPHVSLQHLSNDYGPLMFLQLG----------SVPTLVISSADVAREIFRT-HDLIFSGR 104 (175)
Q Consensus 56 ~~~~~~~~~~~~yg~i~~~~~~----------~~~~v~i~~p~~~~~il~~-~~~~~~~~ 104 (175)
+....+.+...+||.|..+.+. |.-.|-..+++.++..... ++..|..+
T Consensus 25 d~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 25 DLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp -CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4456677778899998877653 1234566788888777754 44445444
No 100
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.78 E-value=54 Score=18.03 Aligned_cols=49 Identities=10% Similarity=0.189 Sum_probs=33.4
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC------------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG------------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~------------~~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 9 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 9 FIKNLNF---STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 4555542 23346678888899998777653 2345667899999988874
No 101
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.69 E-value=46 Score=17.21 Aligned_cols=46 Identities=4% Similarity=0.033 Sum_probs=29.3
Q ss_pred CcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHhcCcccc
Q 041764 57 PHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRTHDLIFS 102 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~ 102 (175)
....+.+...+||+|..+.+.. .-.|-..+++.++..+...+..+.
T Consensus 13 t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~ 67 (77)
T 1uaw_A 13 TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELD 67 (77)
T ss_dssp CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCS
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccC
Confidence 3455778888999876665422 234455688888888865443333
No 102
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=36.62 E-value=56 Score=21.12 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=33.3
Q ss_pred CCcHHHHHHHHhhCCeEEEecC--------CccEEEeccHHHHHHHHHhcCccccc
Q 041764 56 SPHVSLQHLSNDYGPLMFLQLG--------SVPTLVISSADVAREIFRTHDLIFSG 103 (175)
Q Consensus 56 ~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~p~~~~~il~~~~~~~~~ 103 (175)
-....+.++..+||+|..+.+. |.-.|-..+++.++..+......+..
T Consensus 121 ~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~G 176 (193)
T 2voo_A 121 ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKE 176 (193)
T ss_dssp CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETT
T ss_pred CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECC
Confidence 3446778888899998777653 34566677999999988654444443
No 103
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.65 E-value=52 Score=17.68 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=31.7
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC----CccEEEeccHHHHHHHH
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG----SVPTLVISSADVAREIF 94 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~----~~~~v~i~~p~~~~~il 94 (175)
++|++..- -....+.++..+||+|..+.+. +.-.|-..+++.++.+.
T Consensus 9 ~V~nLp~~---~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 9 FVGRCTGD---MTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp EEESCCSS---SCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred EEeCCCCC---CCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 34555422 2345677888899999888874 34677788898887653
No 104
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=35.25 E-value=60 Score=18.14 Aligned_cols=49 Identities=10% Similarity=0.243 Sum_probs=33.0
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 27 ~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 27 FVTGVHE---EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 4455542 23345678888999998877763 2245667899998888864
No 105
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.16 E-value=64 Score=18.40 Aligned_cols=47 Identities=6% Similarity=0.026 Sum_probs=31.6
Q ss_pred CcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHhcCccccc
Q 041764 57 PHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRTHDLIFSG 103 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~~~~~~~~ 103 (175)
....+.++..+||.|..+.+. +.-.|-..+++.++..+.-+...+..
T Consensus 38 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g 93 (114)
T 2cq4_A 38 RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLG 93 (114)
T ss_dssp CHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETT
T ss_pred CHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCC
Confidence 345677888899999888774 23456677888888877334444433
No 106
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=35.09 E-value=62 Score=18.24 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=32.9
Q ss_pred CCccccccccCCCCCcHHHHHHHHhhCCeEEEecC---CccEEEeccHHHHHHHHH
Q 041764 43 LPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---SVPTLVISSADVAREIFR 95 (175)
Q Consensus 43 ~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~p~~~~~il~ 95 (175)
|=++||+.. .--...+.++..+||+|..+.+. |--.|-..+++.++....
T Consensus 9 wL~VgNL~~---~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 9 WLLLKNLTA---QIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp EEEEECCCT---TCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred eEEEeCCCc---cCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 445566643 23346788999999999888753 345566667766666554
No 107
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=34.91 E-value=63 Score=18.25 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=33.9
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 30 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 30 FVTSIHE---EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4455542 23345678888999999888774 2346667899999888863
No 108
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=34.79 E-value=65 Score=18.39 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=32.7
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
++|++..- -....+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 29 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 29 FIYHLPQE---FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp EEESCCSS---CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH
Confidence 45665432 33466788888999987766532 245667789988888854
No 109
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=34.66 E-value=68 Score=18.59 Aligned_cols=38 Identities=5% Similarity=0.052 Sum_probs=28.0
Q ss_pred CcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHH
Q 041764 57 PHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIF 94 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il 94 (175)
....+.++..+||+|..+.+. +.-.|-..+++.++..+
T Consensus 49 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 49 TAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV 95 (124)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Confidence 346678888899998777652 13456778999998888
No 110
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.47 E-value=67 Score=18.41 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=33.9
Q ss_pred CcHHHHHHHHhhCCeEEEecC---CccEEEeccHHHHHHHHHh-cCcccccCC
Q 041764 57 PHVSLQHLSNDYGPLMFLQLG---SVPTLVISSADVAREIFRT-HDLIFSGRP 105 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~p~~~~~il~~-~~~~~~~~~ 105 (175)
....+.++..+||+|..+.+. +.-.|-..+++.++..+.. +...+..++
T Consensus 23 te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 23 LAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp CHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 446678888999999888874 3456677889988888764 333344433
No 111
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=34.25 E-value=60 Score=17.85 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=35.0
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEec-CCccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQL-GSVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~p~~~~~il~~ 96 (175)
++|++..- .-....+.++..+||+|..+.+ -+.-.|-..+++.++..+..
T Consensus 14 ~V~nlp~~--~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 64 (96)
T 2kvi_A 14 FIGNLPLK--NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEC 64 (96)
T ss_dssp EEESSTTS--CCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCcc--cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 45665420 2334567888889999887776 34566778899999988864
No 112
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=34.13 E-value=62 Score=17.92 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=29.2
Q ss_pred CcHHHHHHHHhhCCeEEEecC----CccEEEeccHHHHHHHHHh
Q 041764 57 PHVSLQHLSNDYGPLMFLQLG----SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~----~~~~v~i~~p~~~~~il~~ 96 (175)
....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 13 t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 13 GKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp SHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHH
Confidence 345677888899998777653 3456667899998888763
No 113
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.78 E-value=68 Score=18.30 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=34.2
Q ss_pred CccccccccCCCCCcHHHHHHHHhhCCeEEEecC---CccEEEeccHHHHHHHHH
Q 041764 44 PVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---SVPTLVISSADVAREIFR 95 (175)
Q Consensus 44 p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~p~~~~~il~ 95 (175)
=++||+.. .-....+.++..+||.|..+.+. +.-.|-..+.+.++..+.
T Consensus 18 l~V~nLp~---~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 18 VHVRGLCE---SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp EEEESCCS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 35566543 23346678889999999888763 345666778888888775
No 114
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=33.34 E-value=69 Score=18.24 Aligned_cols=51 Identities=8% Similarity=0.131 Sum_probs=34.9
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHhcC
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRTHD 98 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~ 98 (175)
++|++.. .-....+.++..+||+|..+.+.. .-.|-..+++.++..+...+
T Consensus 29 fV~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 29 FIGGLSW---QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp EEESCCT---TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred EEeCCCC---CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 4555532 233456788888999998877642 34677789999999886543
No 115
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=33.02 E-value=66 Score=17.94 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=34.7
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC-CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG-SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-~~~~v~i~~p~~~~~il~~ 96 (175)
++|++..- -....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 15 ~V~nl~~~---~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 15 FVRNLANT---VTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp EEECCCTT---CCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHH
Confidence 45665432 3346678888899999888764 4556677899999888864
No 116
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.57 E-value=64 Score=18.37 Aligned_cols=40 Identities=8% Similarity=0.149 Sum_probs=28.5
Q ss_pred CcHHHHHHHHhhCCeEEEecC-------CccEEEeccHHHHHHHHHh
Q 041764 57 PHVSLQHLSNDYGPLMFLQLG-------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~p~~~~~il~~ 96 (175)
....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 42 te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 42 RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp CHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 345677888899998777663 2345667788888888764
No 117
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=31.52 E-value=89 Score=18.95 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=31.7
Q ss_pred CcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHhcCcccc
Q 041764 57 PHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRTHDLIFS 102 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~ 102 (175)
....+.+...+||+|..+.+.. .-.|-..+++.++.++..+...+.
T Consensus 100 t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~ 154 (167)
T 2cjk_A 100 RPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFK 154 (167)
T ss_dssp CHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSS
T ss_pred CHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeC
Confidence 3456778888999988777642 245667799999988864333333
No 118
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.43 E-value=69 Score=17.61 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=32.8
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeE-EEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLM-FLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~-~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
++|++..- -....+.++..+||+|. .+.+.. .-.|-..+++.++..+..
T Consensus 13 ~V~nLp~~---~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 13 WMGDLEPY---MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp EECSCCTT---CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred EEeCCCCC---CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 45665432 33466788888999987 666531 235667799999888864
No 119
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=31.34 E-value=79 Score=18.27 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=33.2
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC--------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG--------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 11 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 11 FIGGLNR---ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp EEECCTT---TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 3455542 23445678888899998777653 2345667899999888864
No 120
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.26 E-value=63 Score=17.13 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=31.4
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHH
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFR 95 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~ 95 (175)
++|++.. .-....+.++..+||+|..+.+.. .-.|-..+++.++..+.
T Consensus 9 ~v~nlp~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 9 YIRGLQP---GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEESCCT---TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 4565542 233455677778899988776532 24566788888888775
No 121
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=31.25 E-value=85 Score=18.62 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=34.7
Q ss_pred CCccccccccCCCCCcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 43 LPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 43 ~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
.-++|++..- -....+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 48 ~l~V~nLp~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 48 CLGVFGLSLY---TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CBCEETCTTS---CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3455665432 3345678888999999887763 2345667899999888864
No 122
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.21 E-value=59 Score=18.10 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=32.5
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
++|++..- -....+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 19 ~V~nlp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 19 RVTNLSED---TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEESCCTT---CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 45655432 33455677778899988777632 245667899999888864
No 123
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.14 E-value=63 Score=18.50 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=29.2
Q ss_pred CcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHhc
Q 041764 57 PHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRTH 97 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~~ 97 (175)
....+.++..+||+|..+.+.. .-.|-..+++.++..+..+
T Consensus 40 te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~ 89 (116)
T 1x4b_A 40 TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 89 (116)
T ss_dssp CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSC
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhC
Confidence 3456778888999987776532 3456677999999888653
No 124
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.01 E-value=70 Score=17.58 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=30.0
Q ss_pred CcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 57 PHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
....+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 21 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 21 SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 3456788888999998888742 345677899999888854
No 125
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=30.95 E-value=97 Score=19.19 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=33.2
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
++||+.. .-....+.++..+||+|..+.+. +.-+|-..+++.++..+..
T Consensus 76 ~V~nLp~---~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 76 FVTSIHE---EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133 (165)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH
Confidence 4455542 23446678888999998877663 2345667788988888864
No 126
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.94 E-value=68 Score=17.39 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=34.1
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC-ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS-VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~-~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 14 ~V~nLp~---~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 14 HVGNISP---TCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp EEESCCS---SCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 4566543 234466788889999988887643 455667788988888854
No 127
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=30.85 E-value=81 Score=18.29 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=34.8
Q ss_pred ccccccccCCCCCcHHHHHHHHhhC-CeEEEecC-----CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYG-PLMFLQLG-----SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg-~i~~~~~~-----~~~~v~i~~p~~~~~il~~ 96 (175)
++||+.. .-....+.++..+|| .|..+.+. |.-.|-..+++.++..+..
T Consensus 32 ~VgnLp~---~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 32 TMKNLPE---GCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp EEECSSC---CCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH
T ss_pred EEECCCC---CCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH
Confidence 4566643 234566788889999 78777663 4567778899999888864
No 128
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.78 E-value=78 Score=18.08 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=34.8
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHhcC
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRTHD 98 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~ 98 (175)
+++++..- -....+.++..+||+|..+.+.. .-.|-..+++.++..+....
T Consensus 21 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 80 (116)
T 2cqd_A 21 FVGGLPYH---TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 80 (116)
T ss_dssp EEECCCSS---CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence 44555422 33456788888999998887643 24566789999998886543
No 129
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.75 E-value=86 Score=18.56 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=33.9
Q ss_pred CccccccccCCCCCcHHHHHHHHhhCCeEEEecC---CccEEEeccHHHHHHHHH
Q 041764 44 PVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---SVPTLVISSADVAREIFR 95 (175)
Q Consensus 44 p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~p~~~~~il~ 95 (175)
=++||+..- -....+.++..+||.|..+.+. +.-.|-..+.+.++..+.
T Consensus 34 LfVgNLp~~---vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 34 IHIRKLPID---VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp EEEESCCTT---CCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 356766532 3345678888999998877764 345666778888887775
No 130
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.50 E-value=69 Score=17.36 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=33.7
Q ss_pred CccccccccCCCCCcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 44 PVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 44 p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
=++|++..- -....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 18 l~v~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 18 LGVFGLSLY---TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp EEEESCCSS---CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCCC---CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 345665432 3345678888899998877763 1245667799999888864
No 131
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=30.45 E-value=68 Score=17.28 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=32.8
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC-------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG-------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 12 ~V~nlp~---~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 12 FVRNLPF---DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp EECSCCT---TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHH
Confidence 4455542 23446678888899998777653 2345667789988888764
No 132
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=30.41 E-value=1.1e+02 Score=22.91 Aligned_cols=49 Identities=8% Similarity=0.169 Sum_probs=33.5
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
++||+..- -....+.++..+||.|..+.+. +.-+|.+.+++.++.++..
T Consensus 106 fV~nL~~~---~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 106 FVARVNYD---TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred EEeCCCCC---CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 45665432 2345677888899999887763 2356777789988888854
No 133
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.39 E-value=75 Score=17.73 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=34.3
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCCc----------cEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGSV----------PTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~----------~~v~i~~p~~~~~il~~ 96 (175)
++|++..- -....+.++..+||+|..+.+... -.|-..+++.++..+..
T Consensus 19 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 77 (107)
T 2cph_A 19 LVRNIPFQ---ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 77 (107)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCc---CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHH
Confidence 45665432 334567888899999988877433 35667799999888864
No 134
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=30.38 E-value=73 Score=17.64 Aligned_cols=50 Identities=16% Similarity=0.304 Sum_probs=34.4
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC-CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG-SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-~~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. ..-....+.++..+||.|..+.+. |.-.|-..+++.++..+..
T Consensus 26 ~V~nLp~--~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 26 FIGNLPL--KNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp EEESCCS--SCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCc--ccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 4455542 023345678888999999888763 4556677899998888864
No 135
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.34 E-value=73 Score=17.61 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=33.2
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
+++++.. .-....+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 16 ~v~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 16 FVGGLSF---DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp EEESCCT---TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH
T ss_pred EEECCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 4566542 234456788888999988777643 235667789998888854
No 136
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.30 E-value=74 Score=17.66 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=34.2
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
++|++..- -....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 17 ~V~nLp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2dnm_A 17 KVDNLTYR---TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74 (103)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHH
Confidence 45665432 3446678888899999888764 2346777888888888863
No 137
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=30.26 E-value=72 Score=17.46 Aligned_cols=39 Identities=13% Similarity=0.274 Sum_probs=29.2
Q ss_pred cHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 58 HVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 58 ~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
...+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 16 ~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 16 EEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp HHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 45678888899999888774 2345667899998888854
No 138
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.15 E-value=73 Score=17.52 Aligned_cols=55 Identities=7% Similarity=0.111 Sum_probs=35.8
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHhcCcccc
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRTHDLIFS 102 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~ 102 (175)
++|++.. .-....+.++..+||+|..+.+.. .-.|-..+++.++..+.-+...+.
T Consensus 14 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~ 77 (99)
T 2dgs_A 14 FVGGIPH---NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIM 77 (99)
T ss_dssp EEESCCS---SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSS
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEEC
Confidence 4565542 233456788888999998877632 245667899999888863433333
No 139
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.01 E-value=73 Score=17.50 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=29.6
Q ss_pred cHHHHHHHHhhCCeEEEecC---CccEEEeccHHHHHHHHHh
Q 041764 58 HVSLQHLSNDYGPLMFLQLG---SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 58 ~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~p~~~~~il~~ 96 (175)
...+.++..+||+|..+.++ +.-.|-..+++.++..+..
T Consensus 27 ~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 27 PTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp HHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 45678888999999888774 3445667789988888854
No 140
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=29.78 E-value=83 Score=18.52 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=36.9
Q ss_pred CccccccccC--CCCCcHHHHHHHHhhCCeEEEecCC-------------ccEEEeccHHHHHHHHHh-cCcccccCC
Q 041764 44 PVLGNLHQLN--GDSPHVSLQHLSNDYGPLMFLQLGS-------------VPTLVISSADVAREIFRT-HDLIFSGRP 105 (175)
Q Consensus 44 p~~G~~~~~~--~~~~~~~~~~~~~~yg~i~~~~~~~-------------~~~v~i~~p~~~~~il~~-~~~~~~~~~ 105 (175)
=.+.|+..-. ..+...-+.+...+||+|..+.+.. .-.|-..+++.++..... ++..|..|.
T Consensus 23 l~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~ 100 (118)
T 3ue2_A 23 MVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 100 (118)
T ss_dssp EEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3445553220 2345566777778999988776532 234556788888877754 444455443
No 141
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=29.76 E-value=83 Score=18.05 Aligned_cols=49 Identities=14% Similarity=0.322 Sum_probs=34.1
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+. |.-.|...+++.++..+..
T Consensus 10 fV~nL~~---~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 10 TFARLND---NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp EEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEECCCC---CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 4566542 23456678888999999887753 1236778899999988864
No 142
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=29.38 E-value=84 Score=17.98 Aligned_cols=39 Identities=10% Similarity=0.114 Sum_probs=28.9
Q ss_pred cHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 58 HVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 58 ~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
...+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 54 ~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 54 DTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp HHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 456778888999988887642 245667899998888864
No 143
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.31 E-value=83 Score=17.88 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=30.4
Q ss_pred cHHHHHHHHhhCCeEEEecC----CccEEEeccHHHHHHHHHh
Q 041764 58 HVSLQHLSNDYGPLMFLQLG----SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 58 ~~~~~~~~~~yg~i~~~~~~----~~~~v~i~~p~~~~~il~~ 96 (175)
...+.++..+||.|..+.+. |.-+|-..+++.++..+..
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 46788889999999888774 2346677899999888865
No 144
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=29.27 E-value=83 Score=17.89 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=33.3
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||.|..+.+.. .-.|-..+++.++..+..
T Consensus 19 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 19 FVGDLSP---EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4555542 233466788889999988776532 245667899999988864
No 145
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=29.12 E-value=74 Score=17.26 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=33.2
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC--------ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS--------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~--------~~~v~i~~p~~~~~il~~ 96 (175)
+++++.. .-....+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 20 ~v~nlp~---~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 20 FVGNLEA---RVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHH
T ss_pred EEECCCC---CCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 4455542 233466788889999988777632 345667789998888863
No 146
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=28.98 E-value=1e+02 Score=19.35 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=32.3
Q ss_pred CcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHhcCccccc
Q 041764 57 PHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRTHDLIFSG 103 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~~~~~~~~ 103 (175)
....+.++..+||+|..+.+.. .-.|-..+++.+...+......+..
T Consensus 117 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G 172 (196)
T 1l3k_A 117 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG 172 (196)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETT
T ss_pred CHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECC
Confidence 3456778888999987776532 2466778999999888654444433
No 147
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.87 E-value=79 Score=17.53 Aligned_cols=48 Identities=19% Similarity=0.175 Sum_probs=33.1
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC-------CccEEEeccHHHHHHHHH
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG-------SVPTLVISSADVAREIFR 95 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~p~~~~~il~ 95 (175)
++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.++..+.
T Consensus 19 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 19 YVGNLSR---DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp EEESCCT---TCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred EEeCCCc---cCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 4566543 23446678888999998877653 234666789999888886
No 148
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.86 E-value=62 Score=17.88 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=32.6
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC---CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 19 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 19 FVGNLPP---DITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp EEESCCT---TCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 4566543 23345677888899998877764 3345566788888887754
No 149
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.59 E-value=81 Score=17.54 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=34.7
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 19 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 19 YVGGLDE---KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp EEECCCT---TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 4566543 234466788889999998887643 345677899999998875
No 150
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=28.52 E-value=71 Score=16.84 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=33.4
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 11 ~V~nl~~---~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 11 YVGGLAE---EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred EEECCCC---CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 4555542 23346677888899999888763 2246677889998888853
No 151
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.49 E-value=80 Score=17.48 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=28.4
Q ss_pred CcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 57 PHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 21 ~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 21 TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp CHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 345677888899988766653 2345667799999888864
No 152
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=28.09 E-value=1e+02 Score=18.67 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=34.0
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC-----ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS-----VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~-----~~~v~i~~p~~~~~il~~ 96 (175)
++||+.. .--...++++..+||.|-.+.+.. .-.|...+++.++.....
T Consensus 32 ~V~NL~~---~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 32 IVENLFY---PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EEESCCS---CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH
T ss_pred EECCCCC---CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHH
Confidence 4566642 223456889999999988777643 256778888888887754
No 153
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=27.96 E-value=84 Score=17.54 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=32.4
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC--------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG--------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~p~~~~~il~~ 96 (175)
+++|+.. .-....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 33 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 33 LVSNLDF---GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp EEESCCT---TCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4455532 23345678888899998776653 1345667799999888864
No 154
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=27.80 E-value=1e+02 Score=18.51 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=29.1
Q ss_pred CcHHHHHHHHhhCCeEEEecC--------CccEEEeccHHHHHHHHH
Q 041764 57 PHVSLQHLSNDYGPLMFLQLG--------SVPTLVISSADVAREIFR 95 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~p~~~~~il~ 95 (175)
....+.++.++||+|..+.+. +.-.|-..+++.++..+.
T Consensus 13 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~ 59 (166)
T 3md3_A 13 TEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQ 59 (166)
T ss_dssp CHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHH
Confidence 345678888999999877763 235666779999988884
No 155
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=27.78 E-value=1.3e+02 Score=19.56 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=34.4
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC----CccEEEeccHHHHHHHHH
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG----SVPTLVISSADVAREIFR 95 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~----~~~~v~i~~p~~~~~il~ 95 (175)
++||+... .--...+.++..+||+|..+.+. |.-.|-..+++.++..+.
T Consensus 8 ~V~nL~~~--~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 8 MVYGLDQS--KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp EEECCCTT--TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHH
T ss_pred EEeCCCcc--cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 45666411 12235677888899999988764 456778889999888875
No 156
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.57 E-value=91 Score=17.79 Aligned_cols=50 Identities=8% Similarity=0.090 Sum_probs=34.7
Q ss_pred CccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---ccEEEeccHHHHHHHHH
Q 041764 44 PVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---VPTLVISSADVAREIFR 95 (175)
Q Consensus 44 p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---~~~v~i~~p~~~~~il~ 95 (175)
=++||+..- .-....+.++..+||.|..+.+.. .-.|-..+++.++....
T Consensus 18 l~V~nLp~~--~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 18 VHIMDFQRG--KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp EEEESCCCS--SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCC--cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 355766530 123355778888999998888753 45777889998888875
No 157
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.95 E-value=89 Score=17.49 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=36.1
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEE-EecC--------CccEEEeccHHHHHHHHHhcCcccccC
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMF-LQLG--------SVPTLVISSADVAREIFRTHDLIFSGR 104 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~-~~~~--------~~~~v~i~~p~~~~~il~~~~~~~~~~ 104 (175)
++|++.. .-....+.++..+||.|.. +.+. |.-.|-..+++.++..+..+...+..+
T Consensus 19 ~V~nLp~---~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr 84 (104)
T 1wg5_A 19 RLRGLPF---GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 84 (104)
T ss_dssp EEESCCT---TCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSS
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCc
Confidence 4565543 2334567788888998754 4442 345677889999999987644444433
No 158
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=26.80 E-value=79 Score=16.83 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=27.8
Q ss_pred CcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHH
Q 041764 57 PHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFR 95 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~ 95 (175)
....+.++..+||+|..+.+.. .-.|-..+++.++..+.
T Consensus 19 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 66 (89)
T 3ucg_A 19 TAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 66 (89)
T ss_dssp CHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGG
T ss_pred CHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHh
Confidence 3456778888999987776531 24566778888888883
No 159
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=26.77 E-value=1e+02 Score=18.21 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=28.9
Q ss_pred cHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 58 HVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 58 ~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
...+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 56 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 56 EVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp HHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 456788889999988776531 245667899999888864
No 160
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=26.06 E-value=1e+02 Score=17.96 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=29.2
Q ss_pred HHHHHHhhCCeEEEecC-----CccEEEeccHHHHHHHHHh-cCcccccCC
Q 041764 61 LQHLSNDYGPLMFLQLG-----SVPTLVISSADVAREIFRT-HDLIFSGRP 105 (175)
Q Consensus 61 ~~~~~~~yg~i~~~~~~-----~~~~v~i~~p~~~~~il~~-~~~~~~~~~ 105 (175)
+.+...+||.|..+.+. |.-.|-..+++.++..... ++..|..+.
T Consensus 34 l~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 34 VIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp HHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 44556789998877763 3445667788888777754 444555443
No 161
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=25.99 E-value=48 Score=18.44 Aligned_cols=39 Identities=8% Similarity=0.113 Sum_probs=27.9
Q ss_pred CcHHHHHHHHhhCCeEEEecC--------CccEEEeccHHHHHHHHH
Q 041764 57 PHVSLQHLSNDYGPLMFLQLG--------SVPTLVISSADVAREIFR 95 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~p~~~~~il~ 95 (175)
....+.++..+||+|..+.+. |.-.|-..+++.++..+.
T Consensus 22 t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 22 DETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 345677888999998877653 234556678888888886
No 162
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.47 E-value=1e+02 Score=17.76 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=34.6
Q ss_pred CccccccccCCCCCcHHHHHHHHhhCCeEEEecC---CccEEEeccHHHHHHHHH
Q 041764 44 PVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---SVPTLVISSADVAREIFR 95 (175)
Q Consensus 44 p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~p~~~~~il~ 95 (175)
=++||+..- -....+.++..+||.|..+.+. |.-.|-..+++.++..+.
T Consensus 19 LfV~nLp~~---vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 19 IHIRKLPID---VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp EEECSCCTT---SCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 345666432 2345678888999999888764 345677789998888876
No 163
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=25.46 E-value=89 Score=16.99 Aligned_cols=36 Identities=11% Similarity=0.319 Sum_probs=28.1
Q ss_pred HHHHHHhhCCeEEEecC------CccEEEeccHHHHHHHHHh
Q 041764 61 LQHLSNDYGPLMFLQLG------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 61 ~~~~~~~yg~i~~~~~~------~~~~v~i~~p~~~~~il~~ 96 (175)
+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 29 l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 29 LHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp HHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 33888899999888765 4567778899998888864
No 164
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=25.39 E-value=1.1e+02 Score=17.92 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=28.6
Q ss_pred cHHHHHHHHhhCCeEEEecC---CccEEEeccHHHHHHHHHh
Q 041764 58 HVSLQHLSNDYGPLMFLQLG---SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 58 ~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~p~~~~~il~~ 96 (175)
...+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 51 e~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 51 PTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp HHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 45677888899998777664 3455667788888888754
No 165
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.68 E-value=1e+02 Score=17.35 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=33.8
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC---CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 29 ~V~nl~~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 29 YCGGIAS---GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp EEECCSS---CCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 4455543 23345677888899999888763 4456677899988888754
No 166
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=24.57 E-value=1e+02 Score=17.46 Aligned_cols=40 Identities=13% Similarity=0.293 Sum_probs=30.0
Q ss_pred CcHHHHHHHHhhCCeEEEec-CCccEEEeccHHHHHHHHHh
Q 041764 57 PHVSLQHLSNDYGPLMFLQL-GSVPTLVISSADVAREIFRT 96 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~p~~~~~il~~ 96 (175)
....+.++..+||+|..+.+ -|.-.|-..+++.++..+..
T Consensus 44 t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~ 84 (108)
T 2jvo_A 44 QESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEE 84 (108)
T ss_dssp CHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 34567888889999877765 45566777899999888864
No 167
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=24.56 E-value=1.2e+02 Score=18.07 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=27.9
Q ss_pred HHHHHHHhhCCeEEEecC------CccEEEeccHHHHHHHHHh
Q 041764 60 SLQHLSNDYGPLMFLQLG------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 60 ~~~~~~~~yg~i~~~~~~------~~~~v~i~~p~~~~~il~~ 96 (175)
.+.++..+||+|..+.+. |.-.|-..+++.++..+..
T Consensus 49 ~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~ 91 (127)
T 2a3j_A 49 LLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEA 91 (127)
T ss_dssp HHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHH
Confidence 355778899999887763 3456778899998888864
No 168
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.88 E-value=1e+02 Score=17.06 Aligned_cols=49 Identities=8% Similarity=0.220 Sum_probs=33.3
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+.. .-.|-..+++.++..+.+
T Consensus 19 ~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 19 IVLGLPW---KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp EEESCCS---SCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred EEEcCCC---cCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 4566542 233456788889999987776532 245667799999998864
No 169
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=23.52 E-value=1.3e+02 Score=18.22 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=30.4
Q ss_pred CcHHHHHHHHhhCCeEEEecCCc---------cEEEeccHHHHHHHHHh
Q 041764 57 PHVSLQHLSNDYGPLMFLQLGSV---------PTLVISSADVAREIFRT 96 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~~~---------~~v~i~~p~~~~~il~~ 96 (175)
....+.++..+||.|..+.+... -.|-..+++.++..+..
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 34567788899999988876432 46677899999998865
No 170
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=23.32 E-value=90 Score=16.29 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=28.2
Q ss_pred cHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 58 HVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 58 ~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
...+.+...+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 15 ~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 15 DETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 45677788899998877653 1246677899999888864
No 171
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=23.27 E-value=1.4e+02 Score=18.44 Aligned_cols=46 Identities=13% Similarity=0.317 Sum_probs=32.1
Q ss_pred cHHHHHHHHhhC--CeEEEecC-----C----ccEEEeccHHHHHHHHHh-cCccccc
Q 041764 58 HVSLQHLSNDYG--PLMFLQLG-----S----VPTLVISSADVAREIFRT-HDLIFSG 103 (175)
Q Consensus 58 ~~~~~~~~~~yg--~i~~~~~~-----~----~~~v~i~~p~~~~~il~~-~~~~~~~ 103 (175)
...+.++..+|| .|..+.+. + .-.|-..+++.++..+.. ++..+..
T Consensus 69 e~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G 126 (156)
T 3n9u_C 69 DQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG 126 (156)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT
T ss_pred HHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 456788888999 88777652 1 246677899999988876 4444443
No 172
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=23.25 E-value=1.3e+02 Score=18.22 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=33.9
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~ 96 (175)
+++++.. .-....+.++..+||+|..+.+. +.-.|-..+++.++.++..
T Consensus 43 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 43 YVGNLSF---YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4565542 23346678888999999887762 1236677899999998864
No 173
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=22.90 E-value=95 Score=16.39 Aligned_cols=40 Identities=5% Similarity=-0.028 Sum_probs=28.9
Q ss_pred CcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 57 PHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
....+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 19 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 19 TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3456788888999987776532 235667789999888864
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=22.67 E-value=1.3e+02 Score=18.01 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=29.5
Q ss_pred CcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 57 PHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
....+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 15 ~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 63 (167)
T 1fxl_A 15 TQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63 (167)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH
Confidence 3456778888999988776532 246678899999998863
No 175
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=22.54 E-value=1.1e+02 Score=16.87 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=28.5
Q ss_pred CcHHHHHHHHhhCCeEEEecC---CccEEEeccHHHHHHHHHh
Q 041764 57 PHVSLQHLSNDYGPLMFLQLG---SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~p~~~~~il~~ 96 (175)
....+.++..+||.|..+.+. +.-.|-..+++.++..+..
T Consensus 40 ~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 40 TEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp CHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 346677888899998877763 3345566788888877754
No 176
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.53 E-value=1.1e+02 Score=17.20 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=33.3
Q ss_pred CccccccccCCCCCcHHHHHHHHhhCCeEEEecCC--------ccEEEeccHHHHHHHHHh
Q 041764 44 PVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS--------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 44 p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~--------~~~v~i~~p~~~~~il~~ 96 (175)
=+++++..- -....+.++..+||.|..+.+.. .-.|-..+++.++..+..
T Consensus 18 l~V~nlp~~---~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 18 VFVANLDYK---VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp EEEESCCTT---CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 345665432 34466788888999987766532 345667789988888763
No 177
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.94 E-value=1.1e+02 Score=17.00 Aligned_cols=49 Identities=8% Similarity=0.007 Sum_probs=33.6
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCC-eEEEecC----------CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGP-LMFLQLG----------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~-i~~~~~~----------~~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+ |..+.+. +.-.|-..+++.++..+..
T Consensus 12 ~V~nLp~---~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 12 FIGGIPK---MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEECCCT---TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCC---cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 4565542 2334567788889998 8888765 2345667799999988864
No 178
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=21.85 E-value=1.4e+02 Score=17.96 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=34.4
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC----CccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG----SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~----~~~~v~i~~p~~~~~il~~ 96 (175)
++||+..- -....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 77 ~V~nl~~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~ 129 (150)
T 2i2y_A 77 YVGNLGNN---GNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRE 129 (150)
T ss_dssp EEESCCSC---CSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCC---CCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHH
Confidence 45665432 2345678888899999888764 3456677899998888864
No 179
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.77 E-value=1.2e+02 Score=17.03 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=33.5
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC------ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~------~~~v~i~~p~~~~~il~~ 96 (175)
+++++.. .-....+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 26 ~V~nLp~---~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~ 80 (109)
T 1x4a_A 26 YVGNLPP---DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYG 80 (109)
T ss_dssp EEESCCT---TCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHH
Confidence 4455543 234466788889999997776642 336777899998888853
No 180
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.59 E-value=1.1e+02 Score=16.71 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=26.6
Q ss_pred HHHHHhhCCeEEEecC------CccEEEeccHHHHHHHHHh
Q 041764 62 QHLSNDYGPLMFLQLG------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 62 ~~~~~~yg~i~~~~~~------~~~~v~i~~p~~~~~il~~ 96 (175)
.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 31 ~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~ 71 (96)
T 2dgx_A 31 QEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNS 71 (96)
T ss_dssp HHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHH
T ss_pred HHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHH
Confidence 3888899999888774 2346667799988888763
No 181
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=21.55 E-value=65 Score=19.14 Aligned_cols=16 Identities=19% Similarity=0.493 Sum_probs=13.5
Q ss_pred HHHHHHhhCCeEEEec
Q 041764 61 LQHLSNDYGPLMFLQL 76 (175)
Q Consensus 61 ~~~~~~~yg~i~~~~~ 76 (175)
-+++.+|||.+|++.+
T Consensus 10 ~~~lk~kygk~y~v~~ 25 (114)
T 3fgx_A 10 TDELKQKYGRVYEIRI 25 (114)
T ss_dssp HHHHHHHHSSEEEEEE
T ss_pred HHHHHHHhCceEEEEe
Confidence 4688999999999865
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=21.44 E-value=1.9e+02 Score=19.61 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=34.4
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecC-------CccEEEeccHHHHHHHHHhc
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG-------SVPTLVISSADVAREIFRTH 97 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~p~~~~~il~~~ 97 (175)
++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.++..+.-+
T Consensus 45 ~V~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~ 101 (292)
T 2ghp_A 45 LVKNLPK---SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKT 101 (292)
T ss_dssp EEEEECT---TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTT
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhC
Confidence 4566543 23346678888999998777652 34567788999999988433
No 183
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=21.16 E-value=1.2e+02 Score=16.84 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=33.5
Q ss_pred ccccccccCCCCCcHHHHHHHHhhCCeEEEecCC---------ccEEEeccHHHHHHHHHh
Q 041764 45 VLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLGS---------VPTLVISSADVAREIFRT 96 (175)
Q Consensus 45 ~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~p~~~~~il~~ 96 (175)
++|++.. .-....+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 17 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 17 FIGQIPR---NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp EEESCCT---TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4565542 233456788889999988887643 245667788888888753
No 184
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.54 E-value=1.2e+02 Score=16.71 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=34.1
Q ss_pred CCccccccccCCCCCcHHHHHHHHhhCCeEEEecC-------CccEEEeccHHHHHHHHHh
Q 041764 43 LPVLGNLHQLNGDSPHVSLQHLSNDYGPLMFLQLG-------SVPTLVISSADVAREIFRT 96 (175)
Q Consensus 43 ~p~~G~~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~p~~~~~il~~ 96 (175)
.=++|++..- -....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 17 ~l~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 17 NLYVKNLDDG---IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE 74 (103)
T ss_dssp CEEEECCCTT---CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHH
Confidence 3455665432 3345677788899998877664 2345667899999888864
No 185
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=20.16 E-value=1.2e+02 Score=16.72 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=31.0
Q ss_pred HHHHHHHHhhCCeEEEecC---------CccEEEeccHHHHHHHHHh-cCcccc
Q 041764 59 VSLQHLSNDYGPLMFLQLG---------SVPTLVISSADVAREIFRT-HDLIFS 102 (175)
Q Consensus 59 ~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~p~~~~~il~~-~~~~~~ 102 (175)
..+.++..+||+|..+.+. |.-.|-..+++.++..+.. +...+.
T Consensus 27 ~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 27 KALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp HHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred HHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 4567778899999888874 2346777899999888854 333444
No 186
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=20.15 E-value=37 Score=20.09 Aligned_cols=17 Identities=6% Similarity=0.235 Sum_probs=13.9
Q ss_pred CcHHHHHHHHhhCCeEE
Q 041764 57 PHVSLQHLSNDYGPLMF 73 (175)
Q Consensus 57 ~~~~~~~~~~~yg~i~~ 73 (175)
...++.++++++|++|+
T Consensus 88 a~~fi~kYM~K~G~vY~ 104 (112)
T 2a7o_A 88 TKEYIKKYMQKFGAVYK 104 (112)
T ss_dssp HHHHHHHHHTTTCSBCC
T ss_pred HHHHHHHHHHHhCCccC
Confidence 45778889999999976
Done!