BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041765
         (163 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
          Length = 660

 Score = 33.9 bits (76), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 15  DGQNSASEEDFQLAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIA 60
           D ++S++  D       RKRK  +    SA+RSR+ +++ LDD+IA
Sbjct: 613 DEEDSSNNADVSEEERSRKRKLDEKENLSAKRSRIEQKEELDDVIA 658


>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
           Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
           Sp. Adp1
          Length = 454

 Score = 31.6 bits (70), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 23/29 (79%)

Query: 42  ESARRSRMRKQKHLDDLIAQVDQLRKENN 70
           E+A ++ + +QKHL D+I+QVD++++  N
Sbjct: 393 EAACKTAVAEQKHLKDIISQVDEVKQYFN 421


>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
 pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
 pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
 pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
          Length = 640

 Score = 30.8 bits (68), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 30  DQRKRKRMQSNRE--SARRSRMRKQKHLDDLIA 60
           ++R RKR    +E  SA+RSR+ +++ LDD+IA
Sbjct: 606 EERSRKRKLDEKENLSAKRSRIEQKEELDDVIA 638


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.129    0.343 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,135,688
Number of Sequences: 62578
Number of extensions: 88243
Number of successful extensions: 343
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 26
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)