Query 041765
Match_columns 163
No_of_seqs 200 out of 868
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 10:24:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4005 Transcription factor X 99.5 1.7E-13 3.7E-18 115.5 14.2 86 28-113 65-150 (292)
2 smart00338 BRLZ basic region l 99.5 4.6E-13 1E-17 91.1 9.2 60 30-89 3-62 (65)
3 PF00170 bZIP_1: bZIP transcri 99.4 1.2E-12 2.6E-17 88.9 9.3 61 30-90 3-63 (64)
4 KOG4343 bZIP transcription fac 99.2 1.9E-11 4E-16 112.4 7.2 66 30-95 279-344 (655)
5 PF07716 bZIP_2: Basic region 99.2 1.7E-10 3.7E-15 76.3 8.7 50 30-80 3-52 (54)
6 KOG3584 cAMP response element 99.2 9E-11 1.9E-15 101.4 8.0 54 30-83 289-342 (348)
7 KOG0709 CREB/ATF family transc 99.0 5.6E-10 1.2E-14 101.2 7.0 72 28-106 247-318 (472)
8 KOG0837 Transcriptional activa 98.3 4E-06 8.6E-11 71.8 9.8 66 35-120 209-274 (279)
9 PF03131 bZIP_Maf: bZIP Maf tr 98.1 5.9E-08 1.3E-12 70.5 -5.5 51 28-78 26-76 (92)
10 KOG4571 Activating transcripti 97.9 0.00011 2.5E-09 63.7 10.9 48 29-76 223-271 (294)
11 KOG3119 Basic region leucine z 97.6 0.00057 1.2E-08 58.5 9.2 66 30-116 192-257 (269)
12 KOG4196 bZIP transcription fac 97.2 0.011 2.4E-07 46.2 11.9 69 29-111 50-118 (135)
13 COG3074 Uncharacterized protei 97.1 0.0043 9.4E-08 43.9 7.7 55 55-109 20-74 (79)
14 KOG3863 bZIP transcription fac 97.0 0.0018 3.9E-08 61.2 6.7 73 34-119 492-564 (604)
15 PF06005 DUF904: Protein of un 96.7 0.038 8.3E-07 38.8 10.2 50 61-110 19-68 (72)
16 PF06005 DUF904: Protein of un 96.6 0.056 1.2E-06 38.0 10.5 61 53-113 4-64 (72)
17 TIGR02449 conserved hypothetic 96.6 0.042 9E-07 38.1 9.7 61 55-115 2-62 (65)
18 PF07989 Microtub_assoc: Micro 96.6 0.033 7.2E-07 39.4 9.4 61 55-115 2-70 (75)
19 TIGR02449 conserved hypothetic 96.6 0.029 6.3E-07 38.9 8.6 56 53-108 7-62 (65)
20 PRK15422 septal ring assembly 96.6 0.022 4.7E-07 41.0 8.1 56 56-111 21-76 (79)
21 PF02183 HALZ: Homeobox associ 96.4 0.014 3.1E-07 37.5 5.9 42 64-105 2-43 (45)
22 PF06156 DUF972: Protein of un 96.3 0.038 8.3E-07 41.5 8.4 53 57-109 5-57 (107)
23 PRK10884 SH3 domain-containing 96.0 0.099 2.1E-06 43.4 10.3 41 72-112 123-163 (206)
24 PF06156 DUF972: Protein of un 95.9 0.061 1.3E-06 40.4 7.8 50 53-102 8-57 (107)
25 TIGR02894 DNA_bind_RsfA transc 95.8 0.09 1.9E-06 42.4 9.1 55 61-115 98-152 (161)
26 PRK13169 DNA replication intia 95.8 0.086 1.9E-06 39.9 8.3 51 57-107 5-55 (110)
27 PRK13169 DNA replication intia 95.7 0.076 1.6E-06 40.3 7.8 50 53-102 8-57 (110)
28 PF09738 DUF2051: Double stran 95.5 0.79 1.7E-05 40.2 14.4 81 28-111 88-170 (302)
29 PF07888 CALCOCO1: Calcium bin 95.3 0.54 1.2E-05 44.4 13.7 84 32-115 150-233 (546)
30 PF14197 Cep57_CLD_2: Centroso 95.2 0.33 7.2E-06 33.8 9.0 56 52-107 11-66 (69)
31 COG4467 Regulator of replicati 95.1 0.15 3.3E-06 38.8 7.7 50 57-106 5-54 (114)
32 KOG4005 Transcription factor X 95.1 0.81 1.8E-05 39.5 12.9 94 26-119 67-163 (292)
33 PRK11637 AmiB activator; Provi 95.1 0.75 1.6E-05 41.3 13.4 64 49-112 64-127 (428)
34 PF04899 MbeD_MobD: MbeD/MobD 95.0 0.65 1.4E-05 32.6 10.0 60 56-115 10-69 (70)
35 PRK13729 conjugal transfer pil 94.9 0.098 2.1E-06 48.5 7.2 52 51-102 74-125 (475)
36 PF11559 ADIP: Afadin- and alp 94.8 0.75 1.6E-05 35.5 11.2 82 33-114 46-127 (151)
37 PF14662 CCDC155: Coiled-coil 94.3 0.4 8.6E-06 39.8 8.8 61 55-115 3-63 (193)
38 PF12329 TMF_DNA_bd: TATA elem 94.2 0.95 2.1E-05 31.7 9.4 62 51-112 10-71 (74)
39 PF02183 HALZ: Homeobox associ 94.0 0.31 6.6E-06 31.3 6.1 41 71-111 2-42 (45)
40 PF06785 UPF0242: Uncharacteri 94.0 0.4 8.6E-06 43.1 8.8 60 49-108 123-182 (401)
41 PF10473 CENP-F_leu_zip: Leuci 93.9 2.5 5.5E-05 33.3 13.3 85 31-115 30-114 (140)
42 PRK15422 septal ring assembly 93.9 1.4 3E-05 31.8 9.8 59 54-112 5-70 (79)
43 PF11559 ADIP: Afadin- and alp 93.8 2.4 5.1E-05 32.7 13.4 67 47-113 46-112 (151)
44 COG4026 Uncharacterized protei 93.7 1.1 2.5E-05 38.4 10.7 65 51-115 140-204 (290)
45 TIGR03752 conj_TIGR03752 integ 93.4 0.72 1.6E-05 42.9 9.7 61 54-114 74-135 (472)
46 PF10805 DUF2730: Protein of u 93.4 1.3 2.9E-05 32.8 9.5 64 51-114 33-98 (106)
47 PF10224 DUF2205: Predicted co 93.4 0.62 1.3E-05 33.5 7.4 45 56-100 19-63 (80)
48 PF09304 Cortex-I_coil: Cortex 93.3 2.1 4.7E-05 32.4 10.6 16 52-67 15-30 (107)
49 PRK10884 SH3 domain-containing 93.3 2.7 5.9E-05 34.9 12.2 51 53-103 118-168 (206)
50 PRK11637 AmiB activator; Provi 93.3 2.3 5E-05 38.1 12.7 75 37-111 59-133 (428)
51 PRK04406 hypothetical protein; 93.2 1.3 2.8E-05 31.2 8.7 51 56-106 7-57 (75)
52 PF07106 TBPIP: Tat binding pr 93.1 0.63 1.4E-05 36.6 7.9 26 91-116 112-137 (169)
53 smart00338 BRLZ basic region l 93.1 0.51 1.1E-05 31.6 6.4 38 74-111 26-63 (65)
54 PF12808 Mto2_bdg: Micro-tubul 93.1 0.35 7.6E-06 32.2 5.3 50 50-102 1-50 (52)
55 PRK02119 hypothetical protein; 92.9 1.4 3.1E-05 30.8 8.5 51 56-106 5-55 (73)
56 PF12325 TMF_TATA_bd: TATA ele 92.9 2.2 4.7E-05 32.7 10.2 13 57-69 48-60 (120)
57 PRK09039 hypothetical protein; 92.7 2.5 5.5E-05 37.3 11.9 35 72-106 149-183 (343)
58 PF05266 DUF724: Protein of un 92.7 4.3 9.3E-05 33.3 12.4 86 30-115 87-172 (190)
59 PF12718 Tropomyosin_1: Tropom 92.7 1.9 4.2E-05 33.6 10.0 53 53-105 14-66 (143)
60 PRK04325 hypothetical protein; 92.6 1.4 3E-05 30.9 8.2 50 57-106 6-55 (74)
61 PF11932 DUF3450: Protein of u 92.5 3.7 8E-05 34.3 12.1 28 59-86 62-89 (251)
62 PF09728 Taxilin: Myosin-like 92.2 1.9 4.1E-05 37.7 10.3 64 53-116 244-307 (309)
63 PRK02793 phi X174 lysis protei 92.0 1.6 3.6E-05 30.4 7.9 49 58-106 6-54 (72)
64 PF09726 Macoilin: Transmembra 91.9 4.1 8.8E-05 39.6 13.1 35 59-93 544-578 (697)
65 PRK00295 hypothetical protein; 91.9 2.1 4.6E-05 29.5 8.3 47 54-107 6-52 (68)
66 PF08317 Spc7: Spc7 kinetochor 91.8 2 4.4E-05 37.4 10.1 61 52-112 208-268 (325)
67 PF04102 SlyX: SlyX; InterPro 91.7 1.6 3.4E-05 30.0 7.5 48 53-107 4-51 (69)
68 PF07106 TBPIP: Tat binding pr 91.6 1.9 4.1E-05 33.9 8.9 54 56-109 82-137 (169)
69 PRK00846 hypothetical protein; 91.5 2.2 4.7E-05 30.5 8.2 51 57-107 10-60 (77)
70 PF04880 NUDE_C: NUDE protein, 91.4 0.37 7.9E-06 39.0 4.7 53 55-112 2-54 (166)
71 PF00170 bZIP_1: bZIP transcri 91.4 1.4 3E-05 29.5 6.8 38 73-110 25-62 (64)
72 PF04102 SlyX: SlyX; InterPro 91.1 1.6 3.6E-05 29.9 7.1 46 71-116 8-53 (69)
73 COG1579 Zn-ribbon protein, pos 91.0 9.2 0.0002 32.7 13.5 44 36-79 35-78 (239)
74 TIGR00219 mreC rod shape-deter 91.0 0.68 1.5E-05 39.9 6.2 19 61-79 67-85 (283)
75 COG3883 Uncharacterized protei 90.9 3.3 7.1E-05 35.9 10.2 55 58-112 50-104 (265)
76 PF12325 TMF_TATA_bd: TATA ele 90.8 5.1 0.00011 30.7 10.2 15 91-105 71-85 (120)
77 PF14662 CCDC155: Coiled-coil 90.8 5.2 0.00011 33.2 10.9 40 58-97 100-139 (193)
78 COG3883 Uncharacterized protei 90.7 3 6.5E-05 36.1 9.9 47 54-100 53-99 (265)
79 PF04156 IncA: IncA protein; 90.7 7 0.00015 30.9 13.4 66 46-111 123-188 (191)
80 COG4467 Regulator of replicati 90.6 1.1 2.4E-05 34.2 6.2 47 53-99 8-54 (114)
81 PF15294 Leu_zip: Leucine zipp 90.5 1.2 2.6E-05 38.8 7.3 45 58-102 130-174 (278)
82 PF10224 DUF2205: Predicted co 90.3 4.8 0.0001 28.9 9.1 57 53-109 8-65 (80)
83 PF09755 DUF2046: Uncharacteri 89.8 6.3 0.00014 34.9 11.2 46 57-102 24-69 (310)
84 PRK00888 ftsB cell division pr 89.3 1.8 3.9E-05 32.2 6.5 42 71-112 31-72 (105)
85 COG4942 Membrane-bound metallo 89.0 16 0.00034 33.7 13.5 85 32-116 38-126 (420)
86 PRK00736 hypothetical protein; 88.9 5.1 0.00011 27.6 8.1 47 53-106 5-51 (68)
87 PF08826 DMPK_coil: DMPK coile 88.9 5.7 0.00012 27.1 9.7 46 57-102 15-60 (61)
88 PF11180 DUF2968: Protein of u 88.4 13 0.00029 30.8 13.5 79 33-111 106-184 (192)
89 PF10211 Ax_dynein_light: Axon 88.1 12 0.00027 30.3 11.2 56 55-110 122-178 (189)
90 PRK02119 hypothetical protein; 87.9 4.8 0.0001 28.1 7.5 52 64-115 6-57 (73)
91 KOG1414 Transcriptional activa 87.8 0.02 4.4E-07 51.4 -5.7 69 27-116 149-221 (395)
92 PRK09039 hypothetical protein; 87.7 13 0.00027 33.0 11.8 44 55-98 139-182 (343)
93 PF04111 APG6: Autophagy prote 87.4 17 0.00037 31.8 12.4 71 50-120 61-138 (314)
94 TIGR02169 SMC_prok_A chromosom 87.4 18 0.00038 35.5 13.7 32 76-107 450-481 (1164)
95 PRK00295 hypothetical protein; 87.4 7.1 0.00015 26.9 8.1 46 70-115 8-53 (68)
96 PRK13922 rod shape-determining 87.3 1.9 4E-05 36.3 6.2 7 149-155 148-154 (276)
97 PF01166 TSC22: TSC-22/dip/bun 87.3 0.87 1.9E-05 31.1 3.3 27 70-96 17-43 (59)
98 PF04111 APG6: Autophagy prote 87.2 16 0.00034 32.0 12.0 75 36-110 61-135 (314)
99 KOG0977 Nuclear envelope prote 87.0 4.9 0.00011 38.1 9.3 56 47-102 135-190 (546)
100 PRK02793 phi X174 lysis protei 87.0 5.9 0.00013 27.6 7.6 52 65-116 6-57 (72)
101 KOG3650 Predicted coiled-coil 86.9 5.3 0.00012 30.3 7.7 37 60-96 63-99 (120)
102 PF07407 Seadorna_VP6: Seadorn 86.9 3.4 7.4E-05 37.3 7.7 33 60-94 32-64 (420)
103 COG4942 Membrane-bound metallo 86.8 11 0.00025 34.6 11.3 72 40-111 39-110 (420)
104 PF07412 Geminin: Geminin; In 86.7 3.4 7.4E-05 34.5 7.2 45 67-115 125-169 (200)
105 PF09726 Macoilin: Transmembra 86.7 11 0.00025 36.6 11.8 53 56-108 548-607 (697)
106 PF03962 Mnd1: Mnd1 family; I 86.3 7.8 0.00017 31.5 9.1 8 15-22 55-62 (188)
107 KOG4643 Uncharacterized coiled 85.9 5.4 0.00012 40.6 9.2 59 50-108 527-588 (1195)
108 COG4026 Uncharacterized protei 85.9 6.5 0.00014 33.9 8.6 20 57-76 139-158 (290)
109 PF05377 FlaC_arch: Flagella a 85.9 8.4 0.00018 25.9 7.8 34 82-115 15-48 (55)
110 PF08317 Spc7: Spc7 kinetochor 85.7 11 0.00024 32.9 10.3 45 56-100 219-263 (325)
111 PRK04406 hypothetical protein; 85.7 8.6 0.00019 27.1 7.9 52 64-115 8-59 (75)
112 PF02403 Seryl_tRNA_N: Seryl-t 85.7 9.3 0.0002 27.6 8.5 31 83-113 69-99 (108)
113 PF14197 Cep57_CLD_2: Centroso 85.7 9.7 0.00021 26.4 9.2 43 58-100 24-66 (69)
114 PF10186 Atg14: UV radiation r 85.6 19 0.00041 29.7 13.8 19 53-71 84-102 (302)
115 KOG1414 Transcriptional activa 85.6 0.13 2.8E-06 46.3 -1.8 44 30-73 283-326 (395)
116 COG2900 SlyX Uncharacterized p 85.5 9.9 0.00021 26.9 8.0 52 57-108 5-56 (72)
117 PRK04325 hypothetical protein; 85.4 9.3 0.0002 26.7 7.9 52 64-115 6-57 (74)
118 PF12718 Tropomyosin_1: Tropom 85.4 14 0.0003 28.8 9.7 31 51-81 33-63 (143)
119 PF07334 IFP_35_N: Interferon- 85.2 5.5 0.00012 28.5 6.7 32 84-115 3-34 (76)
120 PF07888 CALCOCO1: Calcium bin 85.1 34 0.00074 32.6 13.7 34 64-97 203-236 (546)
121 PF02403 Seryl_tRNA_N: Seryl-t 85.0 12 0.00027 27.0 10.3 78 39-116 9-95 (108)
122 PF05667 DUF812: Protein of un 84.9 12 0.00025 35.9 10.8 68 49-116 324-391 (594)
123 PRK00736 hypothetical protein; 84.9 9.3 0.0002 26.3 7.6 46 71-116 9-54 (68)
124 KOG1962 B-cell receptor-associ 84.7 4.3 9.4E-05 34.2 7.0 50 58-107 149-198 (216)
125 KOG1853 LIS1-interacting prote 84.6 27 0.00059 30.7 13.5 76 33-108 25-118 (333)
126 smart00787 Spc7 Spc7 kinetocho 84.5 12 0.00026 32.8 10.0 58 54-111 205-262 (312)
127 PF04849 HAP1_N: HAP1 N-termin 84.4 15 0.00033 32.5 10.5 31 68-98 235-265 (306)
128 KOG4343 bZIP transcription fac 84.3 4.4 9.4E-05 38.7 7.5 64 28-102 274-337 (655)
129 KOG2391 Vacuolar sorting prote 84.3 13 0.00028 33.6 10.1 58 49-106 221-278 (365)
130 PF14915 CCDC144C: CCDC144C pr 84.2 22 0.00049 31.4 11.4 74 41-114 181-254 (305)
131 PF08172 CASP_C: CASP C termin 84.1 7.4 0.00016 33.2 8.3 18 54-71 94-111 (248)
132 KOG3650 Predicted coiled-coil 84.0 6.4 0.00014 29.9 6.9 50 61-110 57-106 (120)
133 PHA03011 hypothetical protein; 83.8 10 0.00022 28.8 7.9 54 53-106 64-117 (120)
134 PF07716 bZIP_2: Basic region 83.8 4.2 9E-05 26.4 5.2 30 73-102 24-53 (54)
135 PF04977 DivIC: Septum formati 83.8 5.7 0.00012 26.7 6.2 39 72-110 22-60 (80)
136 PRK10803 tol-pal system protei 83.4 7.2 0.00016 33.2 7.9 48 53-100 54-101 (263)
137 PF06103 DUF948: Bacterial pro 83.3 13 0.00029 26.1 10.3 63 54-116 27-89 (90)
138 PF15070 GOLGA2L5: Putative go 83.2 15 0.00033 35.3 10.8 43 49-91 118-184 (617)
139 PRK04863 mukB cell division pr 83.1 31 0.00068 36.5 13.7 88 32-119 321-428 (1486)
140 PF06632 XRCC4: DNA double-str 83.0 18 0.00039 32.3 10.6 55 56-110 140-209 (342)
141 PF09744 Jnk-SapK_ap_N: JNK_SA 82.8 6.2 0.00014 31.5 6.9 50 56-105 92-141 (158)
142 PF13747 DUF4164: Domain of un 82.6 16 0.00034 26.4 11.6 71 31-101 10-80 (89)
143 PF12711 Kinesin-relat_1: Kine 82.6 12 0.00026 27.3 7.7 39 65-103 22-66 (86)
144 KOG0250 DNA repair protein RAD 82.5 29 0.00063 35.6 12.7 52 49-100 375-427 (1074)
145 PRK00888 ftsB cell division pr 82.4 7.5 0.00016 28.8 6.8 33 76-108 29-61 (105)
146 KOG1962 B-cell receptor-associ 82.3 21 0.00045 30.1 10.1 8 89-96 194-201 (216)
147 PF07058 Myosin_HC-like: Myosi 82.1 5.8 0.00013 35.4 7.0 49 63-111 3-51 (351)
148 PF07558 Shugoshin_N: Shugoshi 82.0 1.8 3.9E-05 27.8 2.9 35 64-98 11-45 (46)
149 PF14988 DUF4515: Domain of un 82.0 25 0.00054 29.1 10.4 51 56-106 152-202 (206)
150 PF12709 Kinetocho_Slk19: Cent 81.9 15 0.00032 26.9 7.9 39 72-110 47-85 (87)
151 PF05278 PEARLI-4: Arabidopsis 81.8 35 0.00075 29.8 12.8 28 53-80 207-234 (269)
152 PF08172 CASP_C: CASP C termin 81.6 13 0.00029 31.6 8.9 8 111-118 130-137 (248)
153 PF14257 DUF4349: Domain of un 81.6 13 0.00027 31.1 8.7 63 53-115 132-196 (262)
154 PF05700 BCAS2: Breast carcino 81.6 9.6 0.00021 31.5 7.9 34 77-110 178-211 (221)
155 PF10174 Cast: RIM-binding pro 81.5 13 0.00029 36.6 9.9 66 49-114 297-362 (775)
156 PF09738 DUF2051: Double stran 81.4 13 0.00029 32.6 9.1 63 58-120 110-175 (302)
157 PF04977 DivIC: Septum formati 81.3 11 0.00023 25.3 6.8 26 53-78 24-49 (80)
158 TIGR02209 ftsL_broad cell divi 81.3 6.9 0.00015 27.0 6.0 35 68-102 25-59 (85)
159 KOG0946 ER-Golgi vesicle-tethe 81.1 28 0.00061 34.9 11.8 52 47-98 665-716 (970)
160 COG3074 Uncharacterized protei 81.1 17 0.00037 25.8 9.4 49 55-103 6-54 (79)
161 PF15035 Rootletin: Ciliary ro 81.0 21 0.00046 29.0 9.5 43 70-112 77-119 (182)
162 PRK03918 chromosome segregatio 80.9 29 0.00062 33.5 11.9 13 90-102 682-694 (880)
163 PF10186 Atg14: UV radiation r 80.6 31 0.00067 28.5 14.0 14 55-68 72-85 (302)
164 KOG1103 Predicted coiled-coil 80.6 26 0.00055 32.3 10.7 58 53-110 132-189 (561)
165 PF12777 MT: Microtubule-bindi 80.5 15 0.00031 32.3 9.0 21 87-107 290-310 (344)
166 smart00340 HALZ homeobox assoc 80.5 4.4 9.5E-05 26.0 4.2 26 77-102 8-33 (44)
167 KOG4797 Transcriptional regula 80.4 4.1 8.9E-05 31.2 4.8 31 67-97 67-97 (123)
168 PRK10636 putative ABC transpor 80.3 22 0.00047 33.7 10.7 64 52-115 562-632 (638)
169 PF13851 GAS: Growth-arrest sp 80.3 15 0.00033 30.1 8.6 14 94-107 92-105 (201)
170 PF10473 CENP-F_leu_zip: Leuci 80.1 27 0.00058 27.5 11.3 60 57-116 42-101 (140)
171 KOG0982 Centrosomal protein Nu 80.1 53 0.0011 30.8 12.6 51 55-105 299-349 (502)
172 PF05103 DivIVA: DivIVA protei 80.0 1 2.3E-05 33.4 1.5 45 53-97 25-69 (131)
173 PF05812 Herpes_BLRF2: Herpesv 80.0 3.3 7.2E-05 31.9 4.2 29 51-79 1-29 (118)
174 KOG4196 bZIP transcription fac 79.6 28 0.00061 27.4 9.6 42 72-114 66-107 (135)
175 PF00038 Filament: Intermediat 79.5 30 0.00064 29.3 10.4 39 64-102 213-251 (312)
176 PHA03162 hypothetical protein; 79.3 1.5 3.3E-05 34.4 2.2 27 50-76 10-36 (135)
177 KOG0982 Centrosomal protein Nu 79.2 20 0.00044 33.4 9.7 63 49-113 281-343 (502)
178 PRK13729 conjugal transfer pil 78.6 14 0.0003 34.6 8.5 55 51-112 67-121 (475)
179 TIGR03752 conj_TIGR03752 integ 78.6 20 0.00044 33.5 9.6 60 55-114 82-142 (472)
180 PF04849 HAP1_N: HAP1 N-termin 78.5 29 0.00064 30.7 10.2 64 50-113 231-294 (306)
181 PF15058 Speriolin_N: Sperioli 78.3 6.4 0.00014 32.8 5.7 34 55-96 7-40 (200)
182 KOG0250 DNA repair protein RAD 77.9 31 0.00067 35.4 11.2 60 56-115 404-463 (1074)
183 PF12709 Kinetocho_Slk19: Cent 77.8 15 0.00033 26.9 6.9 33 57-89 46-78 (87)
184 PF15397 DUF4618: Domain of un 77.8 46 0.00099 28.8 12.1 53 59-111 178-230 (258)
185 PF14282 FlxA: FlxA-like prote 77.6 26 0.00056 25.9 8.7 20 84-103 54-73 (106)
186 PF08647 BRE1: BRE1 E3 ubiquit 77.6 24 0.00053 25.5 11.8 74 36-109 7-80 (96)
187 KOG0243 Kinesin-like protein [ 77.6 33 0.00072 35.1 11.3 44 61-104 449-492 (1041)
188 PF07798 DUF1640: Protein of u 77.1 21 0.00046 28.4 8.3 21 84-104 76-96 (177)
189 PRK14127 cell division protein 76.5 9.3 0.0002 28.9 5.7 33 81-113 37-69 (109)
190 PF03961 DUF342: Protein of un 76.5 29 0.00063 31.4 10.0 34 81-114 375-408 (451)
191 PF05335 DUF745: Protein of un 76.5 41 0.0009 27.6 10.4 67 49-115 63-129 (188)
192 KOG1319 bHLHZip transcription 76.2 46 0.00099 28.0 12.2 84 33-116 59-154 (229)
193 KOG4807 F-actin binding protei 76.2 36 0.00079 31.7 10.4 54 67-120 442-495 (593)
194 PF13805 Pil1: Eisosome compon 76.0 18 0.00038 31.6 8.0 63 36-103 131-194 (271)
195 PF05266 DUF724: Protein of un 76.0 42 0.00091 27.5 12.4 26 83-108 154-179 (190)
196 PF10146 zf-C4H2: Zinc finger- 75.8 48 0.001 28.0 10.8 75 49-123 28-110 (230)
197 PF00038 Filament: Intermediat 75.7 48 0.001 28.0 13.5 33 50-82 220-252 (312)
198 COG1579 Zn-ribbon protein, pos 75.3 51 0.0011 28.2 10.9 9 57-65 93-101 (239)
199 PF02388 FemAB: FemAB family; 75.3 24 0.00052 31.7 9.0 61 53-117 242-302 (406)
200 KOG4360 Uncharacterized coiled 75.1 29 0.00064 33.1 9.7 47 52-98 218-264 (596)
201 PF01486 K-box: K-box region; 74.9 14 0.0003 26.6 6.2 31 68-98 69-99 (100)
202 PF02994 Transposase_22: L1 tr 74.8 13 0.00027 33.3 7.1 43 72-114 142-184 (370)
203 PF05529 Bap31: B-cell recepto 74.7 37 0.0008 27.0 9.2 35 68-102 155-189 (192)
204 PF10506 MCC-bdg_PDZ: PDZ doma 74.7 26 0.00055 24.4 8.4 57 57-113 2-58 (67)
205 PF10481 CENP-F_N: Cenp-F N-te 74.4 44 0.00094 29.5 10.0 71 49-119 49-133 (307)
206 PRK10132 hypothetical protein; 74.3 10 0.00022 28.5 5.4 45 55-99 7-52 (108)
207 PF09789 DUF2353: Uncharacteri 74.3 49 0.0011 29.5 10.5 30 42-71 19-48 (319)
208 KOG1103 Predicted coiled-coil 74.3 22 0.00048 32.7 8.5 70 40-109 225-294 (561)
209 PF10482 CtIP_N: Tumour-suppre 74.2 35 0.00077 26.3 8.4 16 53-68 14-29 (120)
210 KOG0804 Cytoplasmic Zn-finger 74.1 79 0.0017 29.7 12.5 73 35-107 367-447 (493)
211 PF08537 NBP1: Fungal Nap bind 74.0 66 0.0014 28.8 12.8 86 31-116 121-224 (323)
212 PHA03155 hypothetical protein; 74.0 4.8 0.0001 30.9 3.6 26 53-78 8-33 (115)
213 PRK13922 rod shape-determining 74.0 48 0.001 27.8 10.1 8 65-72 74-81 (276)
214 PF03980 Nnf1: Nnf1 ; InterPr 73.9 6.3 0.00014 28.8 4.2 27 51-77 78-104 (109)
215 PRK02224 chromosome segregatio 73.9 90 0.002 30.3 13.4 8 55-62 511-518 (880)
216 PRK10929 putative mechanosensi 73.8 57 0.0012 33.7 12.0 59 62-120 260-318 (1109)
217 KOG3433 Protein involved in me 73.7 48 0.001 27.7 9.6 39 40-78 103-141 (203)
218 KOG0980 Actin-binding protein 73.7 61 0.0013 32.8 11.8 65 37-101 450-514 (980)
219 COG2433 Uncharacterized conser 73.7 71 0.0015 31.1 12.0 27 53-79 436-462 (652)
220 PRK02224 chromosome segregatio 73.4 69 0.0015 31.1 12.2 32 84-115 415-446 (880)
221 KOG2077 JNK/SAPK-associated pr 73.2 13 0.00028 36.0 7.0 45 57-101 326-370 (832)
222 PHA02562 46 endonuclease subun 73.2 58 0.0012 29.7 11.1 43 65-107 363-405 (562)
223 TIGR00414 serS seryl-tRNA synt 73.1 34 0.00073 31.1 9.5 57 57-113 41-101 (418)
224 PF09486 HrpB7: Bacterial type 73.0 47 0.001 26.6 9.6 57 54-110 80-136 (158)
225 PF12329 TMF_DNA_bd: TATA elem 73.0 29 0.00062 24.2 9.8 62 55-116 7-68 (74)
226 PF06103 DUF948: Bacterial pro 73.0 29 0.00064 24.3 8.9 57 52-108 32-88 (90)
227 PRK14872 rod shape-determining 72.7 17 0.00037 32.5 7.3 27 81-107 57-83 (337)
228 PF10146 zf-C4H2: Zinc finger- 72.7 58 0.0012 27.5 10.9 53 51-103 48-103 (230)
229 KOG0804 Cytoplasmic Zn-finger 72.3 56 0.0012 30.7 10.7 44 71-114 386-429 (493)
230 PRK11546 zraP zinc resistance 72.3 30 0.00065 27.4 7.9 54 50-103 58-111 (143)
231 PF10205 KLRAQ: Predicted coil 72.1 39 0.00085 25.4 10.5 59 56-114 15-73 (102)
232 PF09602 PhaP_Bmeg: Polyhydrox 72.1 52 0.0011 26.8 10.1 58 56-113 44-103 (165)
233 KOG0946 ER-Golgi vesicle-tethe 71.9 40 0.00087 33.9 10.1 62 54-115 651-712 (970)
234 PF09789 DUF2353: Uncharacteri 71.9 13 0.00029 33.0 6.4 16 59-74 92-107 (319)
235 KOG1029 Endocytic adaptor prot 71.9 1E+02 0.0022 31.2 12.8 26 89-114 431-456 (1118)
236 PF04728 LPP: Lipoprotein leuc 71.9 28 0.0006 23.5 8.4 27 54-80 4-30 (56)
237 PF05837 CENP-H: Centromere pr 71.8 24 0.00051 26.1 6.9 67 54-120 18-90 (106)
238 PF15035 Rootletin: Ciliary ro 71.7 53 0.0012 26.7 9.5 48 61-108 75-122 (182)
239 KOG4674 Uncharacterized conser 71.7 46 0.001 36.0 11.1 67 49-115 657-723 (1822)
240 PF13851 GAS: Growth-arrest sp 71.6 55 0.0012 26.8 14.3 52 32-83 72-123 (201)
241 PRK11147 ABC transporter ATPas 71.4 28 0.0006 32.9 8.8 55 55-109 570-630 (635)
242 PF04999 FtsL: Cell division p 71.3 17 0.00037 25.8 5.9 51 66-120 34-84 (97)
243 PF13118 DUF3972: Protein of u 71.1 23 0.0005 27.5 6.9 47 53-99 78-124 (126)
244 PF05600 DUF773: Protein of un 71.1 44 0.00095 31.3 9.9 76 38-113 416-492 (507)
245 PRK10722 hypothetical protein; 71.1 32 0.00069 29.7 8.3 39 81-119 176-214 (247)
246 KOG2264 Exostosin EXT1L [Signa 71.0 43 0.00092 32.7 9.8 56 53-108 93-148 (907)
247 KOG1029 Endocytic adaptor prot 71.0 1E+02 0.0023 31.2 12.6 43 72-114 421-463 (1118)
248 PF06810 Phage_GP20: Phage min 70.8 50 0.0011 26.0 9.0 34 50-83 31-67 (155)
249 PF14645 Chibby: Chibby family 70.8 20 0.00044 27.2 6.4 39 57-95 75-113 (116)
250 KOG4674 Uncharacterized conser 70.8 37 0.0008 36.7 10.2 66 45-110 1235-1300(1822)
251 PF07200 Mod_r: Modifier of ru 70.5 45 0.00098 25.4 9.4 33 53-85 55-87 (150)
252 PF14817 HAUS5: HAUS augmin-li 70.4 45 0.00098 32.3 10.1 63 49-111 96-165 (632)
253 PRK04863 mukB cell division pr 70.4 1.2E+02 0.0025 32.4 13.7 61 50-110 366-426 (1486)
254 PF13815 Dzip-like_N: Iguana/D 70.3 23 0.0005 26.4 6.6 28 79-106 85-112 (118)
255 PF15556 Zwint: ZW10 interacto 70.1 68 0.0015 27.3 12.6 79 41-119 115-193 (252)
256 KOG2391 Vacuolar sorting prote 70.1 29 0.00063 31.4 8.1 52 58-109 223-274 (365)
257 PRK14127 cell division protein 70.0 20 0.00044 27.1 6.2 24 85-108 48-71 (109)
258 KOG0288 WD40 repeat protein Ti 69.9 42 0.0009 31.2 9.2 72 36-113 26-102 (459)
259 PF11365 DUF3166: Protein of u 69.9 26 0.00056 26.0 6.6 23 79-101 20-42 (96)
260 TIGR01000 bacteriocin_acc bact 69.8 86 0.0019 28.3 11.6 35 85-119 288-322 (457)
261 PF10805 DUF2730: Protein of u 69.8 42 0.00091 24.7 9.6 51 52-107 48-98 (106)
262 PF15397 DUF4618: Domain of un 69.8 74 0.0016 27.5 11.0 46 36-81 64-109 (258)
263 PF00261 Tropomyosin: Tropomyo 69.7 47 0.001 27.6 9.0 14 55-68 94-107 (237)
264 PRK05431 seryl-tRNA synthetase 69.7 46 0.001 30.2 9.6 56 58-113 40-98 (425)
265 PF15290 Syntaphilin: Golgi-lo 69.5 69 0.0015 28.4 10.1 13 78-90 105-117 (305)
266 COG2433 Uncharacterized conser 69.5 1.2E+02 0.0025 29.7 13.6 12 97-108 497-508 (652)
267 TIGR02209 ftsL_broad cell divi 69.2 24 0.00052 24.2 6.1 28 51-78 29-56 (85)
268 PHA03161 hypothetical protein; 69.2 58 0.0013 26.1 9.3 72 39-112 42-113 (150)
269 PTZ00464 SNF-7-like protein; P 69.2 66 0.0014 26.8 10.2 29 61-89 69-97 (211)
270 KOG0288 WD40 repeat protein Ti 68.9 1E+02 0.0022 28.8 12.1 45 38-82 37-84 (459)
271 PF07558 Shugoshin_N: Shugoshi 68.8 6.6 0.00014 25.1 2.9 42 34-76 3-44 (46)
272 KOG4643 Uncharacterized coiled 68.8 1.2E+02 0.0026 31.4 12.8 87 28-114 369-455 (1195)
273 TIGR01843 type_I_hlyD type I s 68.8 77 0.0017 27.4 11.5 95 29-123 179-281 (423)
274 PRK05431 seryl-tRNA synthetase 68.5 81 0.0018 28.7 10.9 64 53-116 28-94 (425)
275 PF09730 BicD: Microtubule-ass 68.5 37 0.00079 33.4 9.1 43 62-104 99-144 (717)
276 KOG0161 Myosin class II heavy 68.3 1.3E+02 0.0028 33.1 13.6 72 41-112 903-981 (1930)
277 PF05377 FlaC_arch: Flagella a 68.2 31 0.00067 23.2 6.1 27 83-109 9-35 (55)
278 PF04728 LPP: Lipoprotein leuc 67.9 34 0.00075 23.0 8.5 45 60-104 3-47 (56)
279 TIGR00606 rad50 rad50. This fa 67.7 1.2E+02 0.0027 31.3 13.1 27 41-67 845-871 (1311)
280 KOG1318 Helix loop helix trans 67.7 68 0.0015 29.6 10.1 85 27-111 224-327 (411)
281 PF13815 Dzip-like_N: Iguana/D 67.6 42 0.00092 25.0 7.6 39 65-103 78-116 (118)
282 PF04642 DUF601: Protein of un 67.5 8.7 0.00019 33.5 4.2 58 53-110 217-274 (311)
283 PLN02678 seryl-tRNA synthetase 67.4 48 0.001 30.7 9.3 58 57-114 44-104 (448)
284 PF13863 DUF4200: Domain of un 67.3 47 0.001 24.3 9.6 38 80-117 80-117 (126)
285 KOG0933 Structural maintenance 67.3 1.6E+02 0.0035 30.5 13.4 55 50-104 812-866 (1174)
286 KOG3119 Basic region leucine z 67.3 48 0.001 28.4 8.7 41 39-79 208-248 (269)
287 KOG0999 Microtubule-associated 67.2 58 0.0013 31.7 9.8 62 53-114 8-69 (772)
288 PF10168 Nup88: Nuclear pore c 67.0 1.1E+02 0.0024 29.9 12.1 6 60-65 586-591 (717)
289 PF06785 UPF0242: Uncharacteri 67.0 1E+02 0.0022 28.1 11.7 69 32-104 75-157 (401)
290 PF10359 Fmp27_WPPW: RNA pol I 66.9 20 0.00044 33.0 6.8 60 54-118 171-230 (475)
291 PF06419 COG6: Conserved oligo 66.7 57 0.0012 31.1 9.9 63 52-114 44-106 (618)
292 smart00224 GGL G protein gamma 66.7 18 0.0004 24.4 4.9 31 86-116 4-35 (63)
293 PRK13182 racA polar chromosome 66.2 65 0.0014 26.0 8.9 23 94-116 124-146 (175)
294 TIGR02977 phageshock_pspA phag 66.0 73 0.0016 26.1 9.6 19 86-104 125-143 (219)
295 PF08232 Striatin: Striatin fa 65.9 59 0.0013 25.0 9.5 56 58-113 9-64 (134)
296 PF08826 DMPK_coil: DMPK coile 65.7 40 0.00086 23.0 7.5 44 65-108 16-59 (61)
297 PF15233 SYCE1: Synaptonemal c 65.7 65 0.0014 25.4 9.4 39 55-93 8-46 (134)
298 PF04375 HemX: HemX; InterPro 65.5 59 0.0013 28.9 9.3 16 87-102 99-114 (372)
299 PF06216 RTBV_P46: Rice tungro 65.3 60 0.0013 28.7 8.9 34 53-86 78-111 (389)
300 PF04340 DUF484: Protein of un 65.3 35 0.00076 27.9 7.3 50 55-108 42-91 (225)
301 PHA03386 P10 fibrous body prot 65.1 55 0.0012 24.3 8.8 44 72-115 17-60 (94)
302 PF09730 BicD: Microtubule-ass 64.4 79 0.0017 31.2 10.5 48 55-102 71-118 (717)
303 KOG4603 TBP-1 interacting prot 64.4 59 0.0013 27.0 8.2 29 65-93 84-112 (201)
304 PF10211 Ax_dynein_light: Axon 64.3 76 0.0017 25.7 10.3 62 50-111 124-186 (189)
305 PF05384 DegS: Sensor protein 64.3 73 0.0016 25.5 12.2 78 38-115 19-125 (159)
306 PRK11281 hypothetical protein; 63.9 1.3E+02 0.0029 31.1 12.3 83 31-113 159-252 (1113)
307 PRK10920 putative uroporphyrin 63.9 76 0.0016 28.9 9.7 12 54-65 68-79 (390)
308 PF07926 TPR_MLP1_2: TPR/MLP1/ 63.8 62 0.0013 24.5 10.3 17 92-108 102-118 (132)
309 COG3167 PilO Tfp pilus assembl 63.7 37 0.0008 28.5 7.0 47 59-109 48-94 (211)
310 PF06428 Sec2p: GDP/GTP exchan 63.6 8.4 0.00018 28.6 3.0 40 77-116 40-79 (100)
311 PF12777 MT: Microtubule-bindi 63.4 42 0.00091 29.4 7.8 61 54-114 229-289 (344)
312 PF10234 Cluap1: Clusterin-ass 63.2 62 0.0013 28.1 8.6 68 51-121 156-223 (267)
313 COG1340 Uncharacterized archae 63.1 1.1E+02 0.0024 27.1 13.3 15 57-71 31-45 (294)
314 PF10828 DUF2570: Protein of u 63.0 59 0.0013 24.0 9.2 49 55-103 34-82 (110)
315 KOG4360 Uncharacterized coiled 62.9 66 0.0014 30.8 9.3 56 50-105 195-250 (596)
316 PF04136 Sec34: Sec34-like fam 62.8 74 0.0016 25.0 9.2 62 55-116 23-87 (157)
317 PTZ00454 26S protease regulato 62.7 40 0.00086 30.4 7.7 23 86-108 41-63 (398)
318 COG3352 FlaC Putative archaeal 62.6 80 0.0017 25.5 8.5 63 53-121 79-142 (157)
319 KOG2189 Vacuolar H+-ATPase V0 62.4 98 0.0021 31.0 10.6 73 50-122 53-140 (829)
320 PF04859 DUF641: Plant protein 62.4 44 0.00094 26.1 6.9 52 57-108 77-128 (131)
321 PRK04778 septation ring format 62.1 1.2E+02 0.0025 28.6 10.9 57 55-111 378-434 (569)
322 PF06428 Sec2p: GDP/GTP exchan 62.0 34 0.00074 25.4 6.0 60 56-115 11-71 (100)
323 PTZ00454 26S protease regulato 62.0 44 0.00095 30.2 7.8 27 87-113 35-61 (398)
324 TIGR02231 conserved hypothetic 61.9 1.3E+02 0.0029 27.7 12.4 44 72-115 129-172 (525)
325 KOG0995 Centromere-associated 61.7 79 0.0017 30.4 9.7 60 52-111 445-508 (581)
326 COG5570 Uncharacterized small 61.7 21 0.00045 24.1 4.3 50 53-102 5-54 (57)
327 PF12711 Kinesin-relat_1: Kine 61.6 36 0.00079 24.8 5.9 41 61-103 45-85 (86)
328 PRK13182 racA polar chromosome 61.6 80 0.0017 25.5 8.6 30 83-112 120-149 (175)
329 KOG0243 Kinesin-like protein [ 61.4 2E+02 0.0044 29.7 13.2 43 71-113 480-522 (1041)
330 PF07851 TMPIT: TMPIT-like pro 61.2 1.2E+02 0.0025 27.2 10.2 22 56-77 7-28 (330)
331 PF09006 Surfac_D-trimer: Lung 61.0 20 0.00043 23.3 4.0 25 91-115 2-26 (46)
332 COG4372 Uncharacterized protei 60.8 1.4E+02 0.0031 27.8 12.1 40 62-101 139-178 (499)
333 KOG3091 Nuclear pore complex, 60.7 93 0.002 29.5 9.8 38 72-109 360-397 (508)
334 PF10046 BLOC1_2: Biogenesis o 60.7 62 0.0013 23.5 8.1 9 57-65 46-54 (99)
335 TIGR03513 GldL_gliding gliding 60.7 1E+02 0.0022 25.9 12.8 66 48-113 129-197 (202)
336 PF04136 Sec34: Sec34-like fam 60.4 82 0.0018 24.8 10.7 64 52-115 6-69 (157)
337 PF09325 Vps5: Vps5 C terminal 60.2 87 0.0019 25.0 8.7 21 39-59 135-155 (236)
338 TIGR01005 eps_transp_fam exopo 60.1 1.4E+02 0.0029 28.8 11.2 72 41-112 189-268 (754)
339 PF10234 Cluap1: Clusterin-ass 60.1 97 0.0021 26.9 9.3 47 62-108 171-217 (267)
340 PRK14160 heat shock protein Gr 59.9 84 0.0018 26.3 8.7 45 54-98 55-99 (211)
341 PF05557 MAD: Mitotic checkpoi 59.9 72 0.0016 30.7 9.4 26 55-80 505-530 (722)
342 PRK10698 phage shock protein P 59.7 1E+02 0.0022 25.6 11.2 46 62-107 101-146 (222)
343 KOG2264 Exostosin EXT1L [Signa 59.6 1.8E+02 0.004 28.6 12.7 61 56-116 89-149 (907)
344 KOG4603 TBP-1 interacting prot 59.5 93 0.002 25.8 8.6 21 88-108 123-143 (201)
345 KOG0995 Centromere-associated 59.5 1.1E+02 0.0024 29.5 10.2 50 58-107 306-358 (581)
346 PF11382 DUF3186: Protein of u 59.3 29 0.00062 30.2 6.0 23 55-77 34-56 (308)
347 PF13874 Nup54: Nucleoporin co 59.2 80 0.0017 24.2 9.0 32 84-115 68-99 (141)
348 KOG2010 Double stranded RNA bi 59.1 1.3E+02 0.0028 27.4 10.0 77 28-112 123-206 (405)
349 PF15070 GOLGA2L5: Putative go 59.0 93 0.002 30.0 9.8 14 53-66 50-63 (617)
350 PF12795 MscS_porin: Mechanose 58.8 93 0.002 25.7 8.8 15 94-108 119-133 (240)
351 PF15369 KIAA1328: Uncharacter 58.7 1.2E+02 0.0025 27.3 9.7 35 52-86 32-66 (328)
352 COG2919 Septum formation initi 58.7 49 0.0011 24.8 6.5 33 71-103 54-86 (117)
353 PF05911 DUF869: Plant protein 58.6 93 0.002 30.9 9.9 57 53-109 92-169 (769)
354 PRK11281 hypothetical protein; 58.3 2.1E+02 0.0045 29.7 12.6 59 62-120 280-338 (1113)
355 PF00261 Tropomyosin: Tropomyo 58.0 1.1E+02 0.0023 25.4 14.4 63 49-111 165-227 (237)
356 PRK03992 proteasome-activating 57.9 52 0.0011 29.2 7.6 23 86-108 27-49 (389)
357 TIGR00219 mreC rod shape-deter 57.8 48 0.001 28.5 7.1 39 54-95 67-105 (283)
358 PF15188 CCDC-167: Coiled-coil 57.7 71 0.0015 23.2 7.4 57 53-109 5-64 (85)
359 PF05667 DUF812: Protein of un 57.6 79 0.0017 30.3 9.1 47 52-98 334-380 (594)
360 PF07407 Seadorna_VP6: Seadorn 57.5 16 0.00035 33.1 4.2 30 55-84 34-63 (420)
361 PRK06975 bifunctional uroporph 57.5 1.2E+02 0.0027 29.1 10.4 29 56-84 381-409 (656)
362 COG1730 GIM5 Predicted prefold 57.5 71 0.0015 25.2 7.4 41 56-96 97-137 (145)
363 PF10046 BLOC1_2: Biogenesis o 57.3 72 0.0016 23.1 9.5 26 63-88 24-49 (99)
364 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.0 83 0.0018 23.8 10.8 19 86-104 64-82 (132)
365 PF04899 MbeD_MobD: MbeD/MobD 57.0 64 0.0014 22.5 8.2 41 66-106 27-67 (70)
366 PF07889 DUF1664: Protein of u 56.9 90 0.0019 24.1 10.4 31 72-102 66-96 (126)
367 TIGR03545 conserved hypothetic 56.8 1.1E+02 0.0023 29.2 9.7 63 44-106 182-244 (555)
368 PF11544 Spc42p: Spindle pole 56.7 70 0.0015 22.9 6.8 46 70-115 1-46 (76)
369 COG1792 MreC Cell shape-determ 56.5 45 0.00098 28.8 6.7 9 148-156 145-153 (284)
370 PF01486 K-box: K-box region; 56.3 36 0.00078 24.4 5.2 27 83-109 70-96 (100)
371 PF03980 Nnf1: Nnf1 ; InterPr 56.2 27 0.00058 25.4 4.6 31 72-102 78-108 (109)
372 PRK15178 Vi polysaccharide exp 56.1 49 0.0011 30.6 7.2 72 33-104 254-337 (434)
373 PRK05892 nucleoside diphosphat 55.9 88 0.0019 24.7 7.8 62 53-114 11-73 (158)
374 PF10883 DUF2681: Protein of u 55.9 72 0.0016 23.2 6.7 41 54-99 24-64 (87)
375 PF04859 DUF641: Plant protein 55.9 48 0.001 25.9 6.1 43 53-95 87-129 (131)
376 PRK10722 hypothetical protein; 55.7 55 0.0012 28.3 6.9 55 63-117 147-205 (247)
377 PF11180 DUF2968: Protein of u 55.6 1.2E+02 0.0026 25.2 10.9 40 79-118 145-184 (192)
378 COG5185 HEC1 Protein involved 55.5 76 0.0016 30.3 8.3 57 52-108 486-546 (622)
379 KOG2185 Predicted RNA-processi 55.5 93 0.002 29.1 8.7 67 39-105 399-475 (486)
380 cd00068 GGL G protein gamma su 55.4 40 0.00087 22.2 4.9 31 87-117 5-36 (57)
381 PF05837 CENP-H: Centromere pr 55.2 82 0.0018 23.2 9.7 66 50-115 7-78 (106)
382 KOG0612 Rho-associated, coiled 55.0 2.7E+02 0.0058 29.5 12.6 60 50-109 462-529 (1317)
383 KOG0483 Transcription factor H 55.0 26 0.00057 29.0 4.8 46 68-113 106-151 (198)
384 KOG0977 Nuclear envelope prote 54.9 2E+02 0.0044 27.6 11.8 33 76-108 157-189 (546)
385 PF10481 CENP-F_N: Cenp-F N-te 54.7 1.5E+02 0.0034 26.2 14.3 58 36-93 22-86 (307)
386 TIGR02977 phageshock_pspA phag 54.6 1.2E+02 0.0026 24.9 10.3 47 54-100 100-146 (219)
387 PRK10963 hypothetical protein; 54.6 54 0.0012 27.0 6.7 54 58-115 42-98 (223)
388 PF00435 Spectrin: Spectrin re 54.5 61 0.0013 21.5 9.7 21 91-111 76-96 (105)
389 PLN02678 seryl-tRNA synthetase 54.3 1.1E+02 0.0024 28.3 9.2 64 53-116 33-99 (448)
390 PF05529 Bap31: B-cell recepto 54.2 1.1E+02 0.0024 24.3 9.0 21 88-108 154-174 (192)
391 PF06210 DUF1003: Protein of u 54.1 91 0.002 23.3 7.8 10 37-46 55-64 (108)
392 PF14712 Snapin_Pallidin: Snap 54.0 73 0.0016 22.2 9.3 34 55-88 16-49 (92)
393 KOG4687 Uncharacterized coiled 53.9 1.1E+02 0.0025 27.3 8.7 64 53-116 9-72 (389)
394 PF09403 FadA: Adhesion protei 53.9 1E+02 0.0022 23.8 9.0 31 37-69 38-68 (126)
395 PF09727 CortBP2: Cortactin-bi 53.8 1.3E+02 0.0028 25.0 11.5 78 32-111 94-185 (192)
396 cd07596 BAR_SNX The Bin/Amphip 53.8 1E+02 0.0022 23.9 8.0 74 36-112 114-195 (218)
397 PF09763 Sec3_C: Exocyst compl 53.7 78 0.0017 30.3 8.4 63 53-115 37-99 (701)
398 PF05622 HOOK: HOOK protein; 53.7 4.3 9.4E-05 39.0 0.0 54 49-102 321-377 (713)
399 PF06818 Fez1: Fez1; InterPro 53.5 87 0.0019 26.2 7.6 64 49-112 76-162 (202)
400 PRK10361 DNA recombination pro 53.2 2E+02 0.0043 27.0 11.4 24 57-80 64-87 (475)
401 PF12128 DUF3584: Protein of u 53.2 1.6E+02 0.0035 30.3 11.0 29 83-111 506-534 (1201)
402 TIGR01000 bacteriocin_acc bact 53.1 1.6E+02 0.0035 26.5 10.0 36 81-116 276-312 (457)
403 PF09728 Taxilin: Myosin-like 53.0 1.6E+02 0.0034 25.8 10.1 51 51-101 48-98 (309)
404 KOG2129 Uncharacterized conser 52.9 32 0.0007 32.2 5.4 57 56-112 46-102 (552)
405 PF05103 DivIVA: DivIVA protei 52.9 7.5 0.00016 28.7 1.2 30 80-109 31-60 (131)
406 PF10498 IFT57: Intra-flagella 52.7 1.7E+02 0.0038 26.2 10.8 51 61-111 267-317 (359)
407 TIGR02231 conserved hypothetic 52.5 1.9E+02 0.0041 26.6 13.1 48 62-109 126-173 (525)
408 PF13805 Pil1: Eisosome compon 52.4 1.6E+02 0.0035 25.7 10.5 53 31-83 143-195 (271)
409 KOG4593 Mitotic checkpoint pro 52.2 52 0.0011 32.3 6.9 67 46-112 552-624 (716)
410 COG3879 Uncharacterized protei 52.2 92 0.002 26.9 7.8 51 50-101 48-102 (247)
411 cd07666 BAR_SNX7 The Bin/Amphi 52.1 1.2E+02 0.0027 25.7 8.6 50 49-101 159-208 (243)
412 PF14077 WD40_alt: Alternative 52.0 17 0.00037 23.7 2.6 20 53-72 18-37 (48)
413 PF10168 Nup88: Nuclear pore c 51.9 2.3E+02 0.005 27.8 11.4 27 60-86 565-591 (717)
414 PRK03947 prefoldin subunit alp 51.8 86 0.0019 23.6 7.0 33 83-115 15-47 (140)
415 PRK03992 proteasome-activating 51.7 73 0.0016 28.3 7.5 25 87-111 21-45 (389)
416 COG3352 FlaC Putative archaeal 51.6 1.3E+02 0.0028 24.3 9.8 51 62-112 74-125 (157)
417 PF09304 Cortex-I_coil: Cortex 51.5 1.1E+02 0.0023 23.3 13.8 55 34-88 18-72 (107)
418 KOG0971 Microtubule-associated 51.4 99 0.0021 31.8 8.8 34 49-82 406-439 (1243)
419 PF15619 Lebercilin: Ciliary p 51.3 1.4E+02 0.0029 24.5 11.2 67 43-109 8-89 (194)
420 PRK13923 putative spore coat p 51.3 1.3E+02 0.0029 24.5 9.9 45 72-116 109-153 (170)
421 PF12999 PRKCSH-like: Glucosid 51.0 1.4E+02 0.003 24.5 8.3 63 20-82 107-175 (176)
422 COG4420 Predicted membrane pro 50.9 1.3E+02 0.0028 25.0 8.2 48 68-115 135-182 (191)
423 PRK09841 cryptic autophosphory 50.9 1.7E+02 0.0036 28.4 10.2 9 55-63 276-284 (726)
424 KOG0964 Structural maintenance 50.6 2E+02 0.0043 29.9 10.7 52 47-98 412-463 (1200)
425 KOG4797 Transcriptional regula 50.5 84 0.0018 24.2 6.5 24 85-108 64-87 (123)
426 PF13870 DUF4201: Domain of un 50.5 1.2E+02 0.0026 23.8 10.4 34 80-113 83-116 (177)
427 TIGR01010 BexC_CtrB_KpsE polys 50.5 1.4E+02 0.0031 25.9 8.9 18 76-93 216-233 (362)
428 PF13942 Lipoprotein_20: YfhG 50.5 1.4E+02 0.0031 24.6 9.4 42 79-120 128-169 (179)
429 PF00769 ERM: Ezrin/radixin/mo 50.4 1.5E+02 0.0033 24.9 12.0 54 57-110 65-118 (246)
430 PF08232 Striatin: Striatin fa 50.4 1.1E+02 0.0025 23.4 8.2 25 85-109 43-67 (134)
431 KOG0993 Rab5 GTPase effector R 50.3 2.2E+02 0.0049 26.8 10.8 27 36-62 104-130 (542)
432 PF03670 UPF0184: Uncharacteri 50.2 96 0.0021 22.5 7.4 38 54-98 34-71 (83)
433 KOG0996 Structural maintenance 50.2 1.5E+02 0.0033 31.1 10.0 68 42-109 531-598 (1293)
434 PF06008 Laminin_I: Laminin Do 50.2 1.5E+02 0.0033 24.7 10.1 63 52-114 44-106 (264)
435 PF07047 OPA3: Optic atrophy 3 50.1 42 0.0009 25.8 5.0 19 53-71 112-130 (134)
436 PF05600 DUF773: Protein of un 50.1 1.2E+02 0.0025 28.5 8.8 49 51-99 444-492 (507)
437 TIGR02132 phaR_Bmeg polyhydrox 50.1 1.5E+02 0.0032 24.6 8.6 20 89-108 108-127 (189)
438 PF10267 Tmemb_cc2: Predicted 50.0 2.1E+02 0.0045 26.3 13.6 10 89-98 277-286 (395)
439 PF09766 FimP: Fms-interacting 50.0 1.7E+02 0.0038 25.9 9.5 33 48-80 103-135 (355)
440 PRK09413 IS2 repressor TnpA; R 49.8 54 0.0012 24.3 5.5 36 85-120 75-110 (121)
441 cd07596 BAR_SNX The Bin/Amphip 49.8 1.2E+02 0.0026 23.5 12.8 55 46-100 110-171 (218)
442 KOG0994 Extracellular matrix g 49.8 2.2E+02 0.0049 30.3 11.0 59 55-116 1691-1749(1758)
443 PRK14872 rod shape-determining 49.8 60 0.0013 29.1 6.5 17 63-79 60-76 (337)
444 PF11461 RILP: Rab interacting 49.4 35 0.00076 23.3 3.9 28 82-109 4-31 (60)
445 KOG0709 CREB/ATF family transc 49.4 63 0.0014 30.3 6.7 29 76-104 274-302 (472)
446 TIGR03007 pepcterm_ChnLen poly 49.4 2E+02 0.0043 26.0 10.0 30 81-110 204-233 (498)
447 PF10018 Med4: Vitamin-D-recep 49.3 1.4E+02 0.003 24.0 10.2 84 56-142 12-126 (188)
448 PF06548 Kinesin-related: Kine 49.3 2E+02 0.0044 27.1 10.0 27 80-106 447-473 (488)
449 KOG0933 Structural maintenance 49.2 3.3E+02 0.0072 28.4 12.8 15 57-71 791-805 (1174)
450 PF14645 Chibby: Chibby family 49.1 1E+02 0.0022 23.4 6.8 9 89-97 86-94 (116)
451 TIGR02680 conserved hypothetic 49.0 3.4E+02 0.0074 28.5 13.6 11 53-63 882-892 (1353)
452 PF06160 EzrA: Septation ring 48.9 2.4E+02 0.0051 26.6 10.9 62 52-113 371-432 (560)
453 KOG0971 Microtubule-associated 48.8 1.2E+02 0.0026 31.2 8.9 37 80-116 402-438 (1243)
454 cd07429 Cby_like Chibby, a nuc 48.7 47 0.001 25.2 4.9 16 63-78 82-97 (108)
455 PF13874 Nup54: Nucleoporin co 48.7 75 0.0016 24.4 6.3 11 55-65 53-63 (141)
456 COG4717 Uncharacterized conser 48.7 1.4E+02 0.003 30.4 9.3 12 41-52 729-740 (984)
457 PF04880 NUDE_C: NUDE protein, 48.6 38 0.00083 27.4 4.7 19 85-104 35-53 (166)
458 PF05308 Mito_fiss_reg: Mitoch 48.6 26 0.00057 30.0 4.0 22 79-100 120-141 (253)
459 PF06698 DUF1192: Protein of u 48.5 78 0.0017 21.4 5.5 21 55-75 23-43 (59)
460 PF13949 ALIX_LYPXL_bnd: ALIX 48.5 1.6E+02 0.0034 24.5 8.8 63 55-117 24-99 (296)
461 COG1730 GIM5 Predicted prefold 48.4 80 0.0017 25.0 6.4 43 78-120 10-52 (145)
462 PF13942 Lipoprotein_20: YfhG 48.4 98 0.0021 25.5 7.0 31 57-87 127-157 (179)
463 PF00769 ERM: Ezrin/radixin/mo 48.2 1.7E+02 0.0036 24.7 11.8 42 63-104 78-119 (246)
464 PF07889 DUF1664: Protein of u 48.1 1.3E+02 0.0028 23.3 9.4 26 53-78 68-93 (126)
465 PF04420 CHD5: CHD5-like prote 48.1 1.2E+02 0.0027 23.8 7.5 53 53-105 40-97 (161)
466 PF12808 Mto2_bdg: Micro-tubul 48.1 37 0.00081 22.5 3.8 25 56-80 25-49 (52)
467 COG3937 Uncharacterized conser 48.0 1.2E+02 0.0026 23.0 7.3 20 89-108 84-103 (108)
468 PF05557 MAD: Mitotic checkpoi 48.0 89 0.0019 30.1 7.9 54 60-113 566-631 (722)
469 PF15058 Speriolin_N: Sperioli 47.9 24 0.00052 29.5 3.5 36 75-111 6-41 (200)
470 PRK01156 chromosome segregatio 47.8 2.8E+02 0.0061 27.2 13.8 37 79-115 414-450 (895)
471 KOG3335 Predicted coiled-coil 47.8 49 0.0011 27.3 5.2 17 49-65 102-118 (181)
472 KOG4571 Activating transcripti 47.8 2E+02 0.0043 25.5 11.2 42 73-114 247-288 (294)
473 TIGR00606 rad50 rad50. This fa 47.6 3.5E+02 0.0075 28.2 12.9 41 53-93 888-928 (1311)
474 PF04871 Uso1_p115_C: Uso1 / p 47.6 1.3E+02 0.0028 23.2 10.5 70 31-100 40-110 (136)
475 PLN02320 seryl-tRNA synthetase 47.6 2.5E+02 0.0054 26.5 11.9 80 35-114 70-163 (502)
476 PF11068 YlqD: YlqD protein; 47.5 1.3E+02 0.0028 23.3 9.3 59 52-110 26-89 (131)
477 KOG3564 GTPase-activating prot 47.4 2.5E+02 0.0054 27.0 10.3 78 36-113 32-109 (604)
478 PF15619 Lebercilin: Ciliary p 47.3 1.6E+02 0.0034 24.1 9.3 64 48-111 120-194 (194)
479 KOG0976 Rho/Rac1-interacting s 47.1 3.4E+02 0.0074 27.9 12.0 85 30-117 324-408 (1265)
480 PF11853 DUF3373: Protein of u 47.1 18 0.00039 34.0 2.9 32 51-82 29-60 (489)
481 KOG0996 Structural maintenance 46.9 2.9E+02 0.0063 29.1 11.4 81 38-118 520-600 (1293)
482 cd07627 BAR_Vps5p The Bin/Amph 46.8 1.6E+02 0.0034 24.0 8.3 65 48-112 110-174 (216)
483 PF06632 XRCC4: DNA double-str 46.5 2.2E+02 0.0047 25.5 10.3 63 52-116 129-191 (342)
484 KOG4673 Transcription factor T 46.4 1.3E+02 0.0027 30.2 8.5 55 61-115 705-759 (961)
485 PRK09413 IS2 repressor TnpA; R 46.4 58 0.0012 24.1 5.1 36 55-90 73-108 (121)
486 PF05911 DUF869: Plant protein 46.4 1.6E+02 0.0035 29.3 9.4 61 52-112 630-690 (769)
487 PF08912 Rho_Binding: Rho Bind 46.1 1E+02 0.0022 21.6 8.9 58 58-115 1-66 (69)
488 KOG0976 Rho/Rac1-interacting s 46.1 1.5E+02 0.0033 30.3 9.0 67 51-117 240-306 (1265)
489 COG1382 GimC Prefoldin, chaper 46.1 1.3E+02 0.0029 23.1 7.1 46 48-93 65-110 (119)
490 PLN03188 kinesin-12 family pro 46.0 1.2E+02 0.0027 31.9 8.7 59 59-117 1172-1255(1320)
491 PF03961 DUF342: Protein of un 45.8 2.3E+02 0.005 25.6 10.4 67 41-107 329-408 (451)
492 TIGR00414 serS seryl-tRNA synt 45.7 2.3E+02 0.0051 25.6 11.8 82 35-116 5-97 (418)
493 cd07429 Cby_like Chibby, a nuc 45.6 67 0.0014 24.3 5.3 33 74-106 72-104 (108)
494 PF08286 Spc24: Spc24 subunit 45.5 7.5 0.00016 29.1 0.2 43 62-104 1-43 (118)
495 KOG2991 Splicing regulator [RN 45.5 1.6E+02 0.0035 26.0 8.3 60 58-117 215-279 (330)
496 PF12795 MscS_porin: Mechanose 45.2 1.7E+02 0.0038 24.0 9.2 61 52-112 149-209 (240)
497 KOG1850 Myosin-like coiled-coi 45.2 2.4E+02 0.0052 25.7 9.7 64 52-115 249-312 (391)
498 PF09755 DUF2046: Uncharacteri 45.1 2.3E+02 0.0049 25.3 10.4 69 49-117 225-297 (310)
499 KOG2077 JNK/SAPK-associated pr 45.0 92 0.002 30.5 7.3 51 53-103 329-379 (832)
500 PF11544 Spc42p: Spindle pole 44.9 1.1E+02 0.0025 21.8 9.4 56 53-109 5-60 (76)
No 1
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.54 E-value=1.7e-13 Score=115.51 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
.-+||-.||+++||++|+.+|.|||+++++++.+|..|..||+.|+.+++.|..+.+.|.++|..|+.+++.|++.|..+
T Consensus 65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 44788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 041765 108 NDILNF 113 (163)
Q Consensus 108 ~~il~~ 113 (163)
+....+
T Consensus 145 ~~~~~~ 150 (292)
T KOG4005|consen 145 KQQQQH 150 (292)
T ss_pred HHHHHH
Confidence 876654
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.47 E-value=4.6e-13 Score=91.12 Aligned_cols=60 Identities=35% Similarity=0.598 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 041765 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESE 89 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~E 89 (163)
|+|+.+|+++||+||++||.||++|+.+|+.+|..|+.+|..|..++..+..++..|..+
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999888776655554444443
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.43 E-value=1.2e-12 Score=88.93 Aligned_cols=61 Identities=31% Similarity=0.573 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 041765 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESEN 90 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN 90 (163)
+.++.+|+++||+||++||.||+.++++|+.+|..|..+|..|..++..|...+..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678899999999999999999999999999999999999999998888888887777776
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.23 E-value=1.9e-11 Score=112.39 Aligned_cols=66 Identities=30% Similarity=0.361 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041765 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRA 95 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lra 95 (163)
--||..||++|||||..||+|||+|+..||.++..|.+||+.|+.++..|++++..++.||..|+-
T Consensus 279 v~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 279 VLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 356777999999999999999999999999999999999999999999999999999999999864
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.19 E-value=1.7e-10 Score=76.25 Aligned_cols=50 Identities=34% Similarity=0.575 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITT 80 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~ 80 (163)
|+++.||. +||+||++||.||++++.+|+.+|..|+.+|..|..++..|.
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777 999999999999999999999999999999998877776554
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.16 E-value=9e-11 Score=101.42 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041765 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHY 83 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~ 83 (163)
..||.-|+++|||+||.||+|||+|+.|||.+|+.|+.+|..|..++..|++.|
T Consensus 289 trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 356777999999999999999999999999999999999999988887777655
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.02 E-value=5.6e-10 Score=101.17 Aligned_cols=72 Identities=28% Similarity=0.337 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
+..-||-||+++|.+||+.||+|||.|++.||.+|....+||+.|.+++ +.|+.+|..|-+|+..|+..+.+
T Consensus 247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV-------~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKV-------EELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHH-------HHHhhccHHHHHHHHHHHHHHhh
Confidence 3455788999999999999999999999999999999999999987776 56777888888888888776543
No 8
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.34 E-value=4e-06 Score=71.81 Aligned_cols=66 Identities=30% Similarity=0.454 Sum_probs=52.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 35 KRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 35 rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
|..++||++|.+||.||-+|+..||.+|..|..+|..| .++-..|+.++.++.+++ +..+
T Consensus 209 Rkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L--------------~~~l~~l~~~v~e~k~~V------~~hi 268 (279)
T KOG0837|consen 209 RKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDL--------------ASELSKLKEQVAELKQKV------MEHI 268 (279)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH--------------HHHHHHHHHHHHHHHHHH------HHHH
Confidence 34689999999999999999999999999999888775 445556777777776654 5566
Q ss_pred hccCCC
Q 041765 115 NTSSGI 120 (163)
Q Consensus 115 ~~~~~~ 120 (163)
..+.++
T Consensus 269 ~ngc~~ 274 (279)
T KOG0837|consen 269 HNGCQL 274 (279)
T ss_pred hccccc
Confidence 655554
No 9
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.09 E-value=5.9e-08 Score=70.45 Aligned_cols=51 Identities=27% Similarity=0.457 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
..+-|..||.++||.+|+.||.||..++++|+.++..|+.+...|..++..
T Consensus 26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~ 76 (92)
T PF03131_consen 26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSE 76 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688899999999999999999999999999988877665555444433
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.94 E-value=0.00011 Score=63.74 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=36.1
Q ss_pred HHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 041765 29 MDQRKRK-RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV 76 (163)
Q Consensus 29 ~deRk~r-R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i 76 (163)
.++++.+ ..+.|..+|-|.|+||++..+.|+.++..|+++|.+|+.++
T Consensus 223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa 271 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQA 271 (294)
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 45777778999999999999999999888777776654443
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.55 E-value=0.00057 Score=58.50 Aligned_cols=66 Identities=27% Similarity=0.484 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
+.+-.-|+.+|=+++||||.+.+...+++..+|.. |+.||..||.++..|+..+..|..
T Consensus 192 ~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~---------------------leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 192 DPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAE---------------------LEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred CHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556789999999999998887777666655 455566677788888888888888
Q ss_pred HHHHHhc
Q 041765 110 ILNFINT 116 (163)
Q Consensus 110 il~~~~~ 116 (163)
++.....
T Consensus 251 ~~~~~~~ 257 (269)
T KOG3119|consen 251 LFLQLPK 257 (269)
T ss_pred HHHhhcc
Confidence 7766543
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.22 E-value=0.011 Score=46.19 Aligned_cols=69 Identities=22% Similarity=0.380 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 29 MDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 29 ~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
+--|.+||-++||==|+-+|-|+-+.-++||.+-..|..+ ++.|..||+.++.++..+..++..|.
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qq--------------v~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQ--------------VEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999998888888765554433 44566677777777777777776665
Q ss_pred HHH
Q 041765 109 DIL 111 (163)
Q Consensus 109 ~il 111 (163)
.-.
T Consensus 116 ~~~ 118 (135)
T KOG4196|consen 116 NSA 118 (135)
T ss_pred hhh
Confidence 443
No 13
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.0043 Score=43.92 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
+.=|.-+|..|+.+|+.|..+...+......|+.||..|+.+-..++.||++|-.
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446678899999999999999999999999999999999999999999988754
No 14
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.99 E-value=0.0018 Score=61.17 Aligned_cols=73 Identities=29% Similarity=0.423 Sum_probs=56.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 34 RKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 34 ~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
.||+=+||.||+++|+||-..+-.||.+|..|+++-.+|+.+- ..+..+..+++.++.+|... |+..
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er-------~~~d~~L~~~kqqls~L~~~------Vf~~ 558 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER-------DELDSTLGVMKQQLSELYQE------VFQQ 558 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 4677899999999999999999999999999999988876654 34556667777777777544 4555
Q ss_pred HhccCC
Q 041765 114 INTSSG 119 (163)
Q Consensus 114 ~~~~~~ 119 (163)
+-...|
T Consensus 559 lrd~eg 564 (604)
T KOG3863|consen 559 LRDEEG 564 (604)
T ss_pred Hhcccc
Confidence 544444
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.74 E-value=0.038 Score=38.84 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
.+..|+.++..|..+...+.+....|..||..|+.+-..+..||..|-.-
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666666666666667777777777777777777777665443
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.64 E-value=0.056 Score=38.00 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
+-++.|+.+|..+-.....|..++..|.++...+..+|..|+.+...|++.-....+-|..
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999888777765554
No 17
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.64 E-value=0.042 Score=38.13 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+..|+.+|..|=....+|..++..|.++...+..|+..|..+...-+.|+..+-.-|..++
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3445555555555555555555555555666667777777777777776666655555443
No 18
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=96.63 E-value=0.033 Score=39.37 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYM--------NIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~--------~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+.+.+.++..|++||-.|+-+|-.+.++.. .+..+|..|+.++..|+..++.+...|.-++
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999988876 4578999999999999999999999887665
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.58 E-value=0.029 Score=38.89 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
+.++.|-..+.+|+.||..|+.++..+...-..|...|..=|.+++.+-.||.+|.
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 56788888999999999999999999999999999999999999999999988875
No 20
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.58 E-value=0.022 Score=40.97 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
.=|.-+|+.|+.+|..|..+++.+......|+.||..|+.+...++.||..|-.-+
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556777788888888888888777788899999999999999999998876544
No 21
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.42 E-value=0.014 Score=37.54 Aligned_cols=42 Identities=29% Similarity=0.482 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
+|+.+-..|+...+.|...+..|..||..|++++..|..+++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666777777777888888888888888888888877664
No 22
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.26 E-value=0.038 Score=41.53 Aligned_cols=53 Identities=26% Similarity=0.428 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
+|-.++..|+..-..|..++..|+.++..|..||..|+-+...|+.+|..+..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666667777777777777778888888888888888888777665
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.98 E-value=0.099 Score=43.39 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=22.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
+..++....+.+..|+.+|..|+.++..++.++..++.-+.
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555666666666666666666555544433
No 24
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.87 E-value=0.061 Score=40.44 Aligned_cols=50 Identities=30% Similarity=0.351 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
..+..|+.++..|-.+-..|+..+..+.+....|.-||..||..+.++..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999999999866
No 25
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.85 E-value=0.09 Score=42.40 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
....++.||..|..++..|.+++..|+.||..|..++..+......|-.||+..-
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788999999999999999999999999999999999999999999988653
No 26
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.77 E-value=0.086 Score=39.95 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
+|-.++..|+..-..|..++..|++.+..+..||..|+.+-..|+.+|..+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666666666666677777777777777777777777777665
No 27
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.71 E-value=0.076 Score=40.26 Aligned_cols=50 Identities=28% Similarity=0.296 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
..+..|+.++..+-.+-..|+..+..+.++...|..||..||..+.++..
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999999999999999999999843
No 28
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=95.49 E-value=0.79 Score=40.24 Aligned_cols=81 Identities=20% Similarity=0.289 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 28 AMDQRKRKRMQSNRESARRSRMR--KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 28 ~~deRk~rR~lsNReSARRSR~R--Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
..++|-+|=|++| |+--=.| =.-.++-|..++..++.....+..++......+..+......|+.++..|+..|.
T Consensus 88 evEekyrkAMv~n---aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 88 EVEEKYRKAMVSN---AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHH---hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999998 3322221 1234555566666666666666666655556666777777778888888888887
Q ss_pred HHHHHH
Q 041765 106 SLNDIL 111 (163)
Q Consensus 106 ~l~~il 111 (163)
...++|
T Consensus 165 ~rdeli 170 (302)
T PF09738_consen 165 QRDELI 170 (302)
T ss_pred HHHHHH
Confidence 777777
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.35 E-value=0.54 Score=44.39 Aligned_cols=84 Identities=18% Similarity=0.283 Sum_probs=69.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
+.+..+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|..+..++..++..|.+-+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666677777777777888888888888888899999999888888889999999999999999999998888777
Q ss_pred HHHh
Q 041765 112 NFIN 115 (163)
Q Consensus 112 ~~~~ 115 (163)
..++
T Consensus 230 ~~l~ 233 (546)
T PF07888_consen 230 KTLT 233 (546)
T ss_pred HHHH
Confidence 6654
No 30
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.18 E-value=0.33 Score=33.78 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
+.+++.+..++...+.+|..|..+-+....++...-.+|..|++++..|+..|..+
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777777777766666666667777777777777777765543
No 31
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=95.13 E-value=0.15 Score=38.80 Aligned_cols=50 Identities=28% Similarity=0.403 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
++-.+|..|+..-..|..++..+++++..+..||..|+-+...|+.||..
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45567777777778888899999999999999999999999999999977
No 32
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.13 E-value=0.81 Score=39.47 Aligned_cols=94 Identities=22% Similarity=0.327 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHHhHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 26 QLAMDQRKRKRMQSNRES--ARRSRMRKQ-KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 26 ~~~~deRk~rR~lsNReS--ARRSR~RKq-~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
++.++.||.|-+..---| -++.|+-+- ..+.+|+.+-..|+.||+.|+.....|--+.+.+..+-..|++++++|.+
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence 456678888744332222 123344443 34679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCC
Q 041765 103 RLDSLNDILNFINTSSG 119 (163)
Q Consensus 103 rl~~l~~il~~~~~~~~ 119 (163)
..+.=+.++.-=+.+.|
T Consensus 147 ~~~~~~~v~eee~~~~g 163 (292)
T KOG4005|consen 147 QQQHNTRVIEEENASAG 163 (292)
T ss_pred HHHHhhHHHhhhhhccC
Confidence 98888888776655555
No 33
>PRK11637 AmiB activator; Provisional
Probab=95.10 E-value=0.75 Score=41.28 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
...+..+.+++.++..+..+-..+..++..+..++..+..+-..|..++.+++.++..+...+.
T Consensus 64 ~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 64 RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666666666666666666666666666666666666555554
No 34
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=94.97 E-value=0.65 Score=32.57 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
..|+.--..+.+.-+.....+..+...+.....+|..|++++..|..+|..|.+-+..+.
T Consensus 10 ~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 10 SALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334443444555666677888888888999999999999999999999999999888764
No 35
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.85 E-value=0.098 Score=48.49 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
-|...++||++++.|+.|.+.+.+....+++++..++.||..|++|+..+..
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3457789999999999999989899999999999999999999999854433
No 36
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.83 E-value=0.75 Score=35.50 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=60.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 33 KRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 33 k~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
.+.|=..-|+..-....++..-++.|...+..|+.++..+..++..+......+..++..+...+..+.+.++.+...+.
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556777777777777888888888888888888888888877777777777777777777777777777776665
Q ss_pred HH
Q 041765 113 FI 114 (163)
Q Consensus 113 ~~ 114 (163)
.+
T Consensus 126 ~~ 127 (151)
T PF11559_consen 126 QR 127 (151)
T ss_pred HH
Confidence 54
No 37
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.31 E-value=0.4 Score=39.76 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
..+|-..|+.|+.-|..|..++..+...+..++..|+.|..++..|+..+++++..+....
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK 63 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAK 63 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577778888888888888888888888888888888888888888888888887776653
No 38
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=94.16 E-value=0.95 Score=31.71 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
|.+.+..|..+-..|......+...|..|..+...++.+...|+.++..+...+..|...+.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67788888888888888888888888888888888888888888888888888888877664
No 39
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.01 E-value=0.31 Score=31.33 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=35.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
+|......|...|..|.++|..|..+...|+..+..|...+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677888999999999999999999999999999888765
No 40
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.97 E-value=0.4 Score=43.08 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
+|-+.+...||.-+.+++.||+.|..+++.+.+++...+.|+..|-.++.|-.+..+.|+
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~ 182 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN 182 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677778888888899999999999999999998888888888777776666555555
No 41
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.90 E-value=2.5 Score=33.25 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=58.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 31 QRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 31 eRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
+|-..-...|++.+-.-=.-+++.+..|+.++..+..+...|...+..+...-..|..+-...+.++.+|.....++...
T Consensus 30 EreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~ 109 (140)
T PF10473_consen 30 ERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENL 109 (140)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44555566777777777777777888888888887777777777777666666666666666666666666666666655
Q ss_pred HHHHh
Q 041765 111 LNFIN 115 (163)
Q Consensus 111 l~~~~ 115 (163)
|...+
T Consensus 110 l~~~E 114 (140)
T PF10473_consen 110 LQEKE 114 (140)
T ss_pred HHHHH
Confidence 55443
No 42
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.85 E-value=1.4 Score=31.77 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSV-------LRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~-------Lraql~eL~~rl~~l~~il~ 112 (163)
-++.||.+|.+.-....-|..+|..++++...+..|+.. |..+...|++......+-|.
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888887777777777777777777777777666 44455555555544444443
No 43
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.84 E-value=2.4 Score=32.69 Aligned_cols=67 Identities=21% Similarity=0.293 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 47 SRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 47 SR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
.|.|-..+.+.|..++..+..++..|...+..++.++..++.+...+..+...|..++..+...+..
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556677777777777777766666666666666666666666666666666655555443
No 44
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.70 E-value=1.1 Score=38.41 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
=+..++++.++...|..++..|..++..+++++..++.||+.|...+..|-.++..|..-+.-+.
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 34556677777777778888888888888888889999999988877666666655555444443
No 45
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=93.40 E-value=0.72 Score=42.87 Aligned_cols=61 Identities=20% Similarity=0.351 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYM-NIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~-~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
++..|..+-+.|.+||+.|+++...+.+++. .+.++...|..+...|+.+++.+...|..+
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888887776666663 344555555555555555555554444443
No 46
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=93.37 E-value=1.3 Score=32.83 Aligned_cols=64 Identities=20% Similarity=0.369 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNIT--TQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l--~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
|+..++.|..++......-..+..++..+ ...++.|.-+-..++-++.++..+++.++.++..+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665555555555555555 66667777777777888888888888877777765
No 47
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=93.37 E-value=0.62 Score=33.49 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
+.|..++..|+..-..|..++...+..+..|..||..|..=|..|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666677777666666666666666666555544
No 48
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.34 E-value=2.1 Score=32.40 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRK 67 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~ 67 (163)
+..+..|+..+..++.
T Consensus 15 ~n~La~Le~slE~~K~ 30 (107)
T PF09304_consen 15 QNRLASLERSLEDEKT 30 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333333333333
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.29 E-value=2.7 Score=34.87 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
++..+|..++..+......|..++..|.+++..+..++..|++++..+++.
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444555555555565555555543
No 50
>PRK11637 AmiB activator; Provisional
Probab=93.28 E-value=2.3 Score=38.12 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=57.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 37 MQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 37 ~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
..+.....+.....-...++.|+.++..+..+-..+..++..+..++..++.+-..++.++..++..+..+-..+
T Consensus 59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555566677888889999998888889999999999999999999999988888887776665444
No 51
>PRK04406 hypothetical protein; Provisional
Probab=93.17 E-value=1.3 Score=31.23 Aligned_cols=51 Identities=6% Similarity=0.068 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
+.|+.++..|+.....+...|..|...+..-..+...|+.++..|.++|..
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666666666656666666666665555666666666666666666654
No 52
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=93.15 E-value=0.63 Score=36.64 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 91 SVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 91 ~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
..|+.++.+|..++..+..-|..+..
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 53
>smart00338 BRLZ basic region leucin zipper.
Probab=93.09 E-value=0.51 Score=31.60 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=30.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 74 TSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
..+..|..++..|..+|..|+.++..|...+..|..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777788888888888888888888888887765
No 54
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=93.06 E-value=0.35 Score=32.17 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
|+..+|++|+.++.. |-..=...-......+..++.||..|++++.-++.
T Consensus 1 kw~~Rl~ELe~klka---erE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKA---EREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHH---hHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677777766543 32222223455677788899999999999987654
No 55
>PRK02119 hypothetical protein; Provisional
Probab=92.88 E-value=1.4 Score=30.83 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
..++.++..|+.........|..|...+..-..+...|+.++..|..+|..
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555555555555556666666666555544
No 56
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.88 E-value=2.2 Score=32.72 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKEN 69 (163)
Q Consensus 57 eLe~qv~~L~~EN 69 (163)
.|..++..|..+|
T Consensus 48 ~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 48 ELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 57
>PRK09039 hypothetical protein; Validated
Probab=92.73 E-value=2.5 Score=37.34 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=13.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
|+.++..++..+...+.+....+.++..|..+|..
T Consensus 149 Lr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 149 LRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444433
No 58
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.71 E-value=4.3 Score=33.27 Aligned_cols=86 Identities=6% Similarity=0.105 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
|-+-.+.++....+-+-.+.+...+..+++.++..-..++..+...+..+...+..+..+...++.+..+....+..+..
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777889999999999999999999888777777777777777777777776665555555555444444444
Q ss_pred HHHHHh
Q 041765 110 ILNFIN 115 (163)
Q Consensus 110 il~~~~ 115 (163)
-+..++
T Consensus 167 ~~~~l~ 172 (190)
T PF05266_consen 167 EAEALK 172 (190)
T ss_pred HHHHHH
Confidence 444443
No 59
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.71 E-value=1.9 Score=33.64 Aligned_cols=53 Identities=28% Similarity=0.371 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
...+.++.++..|..++..+-.+|..|+.+...++.+-..+..++.++...+.
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555544444444333
No 60
>PRK04325 hypothetical protein; Provisional
Probab=92.60 E-value=1.4 Score=30.92 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
.++.++..|+.........|..|...+..-..+...|+.++..|..+|..
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445444444444445555566666666555544
No 61
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.48 E-value=3.7 Score=34.31 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041765 59 IAQVDQLRKENNQILTSVNITTQHYMNI 86 (163)
Q Consensus 59 e~qv~~L~~EN~~L~~~i~~l~~~~~~l 86 (163)
..+++.|+..|.++...+....+....+
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 62
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=92.15 E-value=1.9 Score=37.74 Aligned_cols=64 Identities=16% Similarity=0.358 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
+.++.+...+..|+.||..+..+.......+..+..|+..+..++..+..++..|..++..+..
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678888899999999999999999999999999999999999999999999999999988753
No 63
>PRK02793 phi X174 lysis protein; Provisional
Probab=92.02 E-value=1.6 Score=30.38 Aligned_cols=49 Identities=22% Similarity=0.180 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
++.++..|+.........|..|...+..-..+...|..++..|..+|..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444555555555555555544
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.92 E-value=4.1 Score=39.59 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041765 59 IAQVDQLRKENNQILTSVNITTQHYMNIESENSVL 93 (163)
Q Consensus 59 e~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~L 93 (163)
..+..+|+.|-..|+.++...++++..++.|...|
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333
No 65
>PRK00295 hypothetical protein; Provisional
Probab=91.86 E-value=2.1 Score=29.52 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
++.+||.+++-.+.-. ..|...+..-..+...|+.++..|..+|..+
T Consensus 6 Ri~~LE~kla~qE~ti-------e~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 6 RVTELESRQAFQDDTI-------QALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666666665554443 3334444444445566666666666666553
No 66
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.81 E-value=2 Score=37.41 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
+..|..|..++..+..+...++..+..++.+...+..+...+.++..++..++..+..++.
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666666666666666666666665555544
No 67
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.70 E-value=1.6 Score=30.03 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
+++.+||.+++-++.-...| ..-+..-..+...|+.++..|..+|..+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~L-------n~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEEL-------NDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666655544444333 3333344444445555555555555444
No 68
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.65 E-value=1.9 Score=33.92 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHY--MNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~--~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
.+|..++..|+.++..|..++..|.... ..+..+...|+.++.+|..+|..|.+
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444333322 34455555555555555555555543
No 69
>PRK00846 hypothetical protein; Provisional
Probab=91.53 E-value=2.2 Score=30.50 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
.++.++..|+.........|..|...+.....+...|+.++..|..+|+.+
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555444444444454444444444445555555555555544443
No 70
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=91.41 E-value=0.37 Score=39.02 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
|+|+|.+..+-=..|.-|..+|+ +-+.|..+++.||.++.+|+.++ .+.+.+.
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 78999999988888988888883 35668888888888888888888 5554443
No 71
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=91.40 E-value=1.4 Score=29.46 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 73 LTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 73 ~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
...+..|...+..|..+|..|+.++..|...+..|..-
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556677777778888888888888888877777654
No 72
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.11 E-value=1.6 Score=29.93 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=25.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
.|..++.....-+..|...-.....++..|+.+++.|..-|..+..
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555666666666666777777777777777777663
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.98 E-value=9.2 Score=32.65 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=26.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765 36 RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNIT 79 (163)
Q Consensus 36 R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l 79 (163)
++..-.+.+++.=.-++..+++|+.+|.+++.+-+.+..++..+
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556667777777777777776666655554443
No 74
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=90.95 E-value=0.68 Score=39.88 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 041765 61 QVDQLRKENNQILTSVNIT 79 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l 79 (163)
.+.+|.+||.+|+.++..+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556777888877776555
No 75
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.89 E-value=3.3 Score=35.93 Aligned_cols=55 Identities=13% Similarity=0.276 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
++.+|..|..+-..+..++..+..++..+..+-..|..+|.+|..++...+++|.
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444555555555555555555555554443
No 76
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.81 E-value=5.1 Score=30.66 Aligned_cols=15 Identities=40% Similarity=0.474 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 041765 91 SVLRAQLLELTQRLD 105 (163)
Q Consensus 91 ~~Lraql~eL~~rl~ 105 (163)
..|+.++.+|..|..
T Consensus 71 ~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 71 EELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 77
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.80 E-value=5.2 Score=33.20 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
|..++..|+.+|..|......+..++..|..++..|+-|+
T Consensus 100 L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 100 LVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 4444444445555554444444444444444444444444
No 78
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.74 E-value=3 Score=36.13 Aligned_cols=47 Identities=11% Similarity=0.332 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
.++.|..+|..+..+-..+..+++.+.+.+..+..+...|+..|.+.
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
No 79
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.72 E-value=7 Score=30.86 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 46 RSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 46 RSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
.-+..+++.++.+...+..+.++-..+...+.........+..+...+++....+...+..+++++
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555554444444444444444444444444444444444444444444
No 80
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=90.59 E-value=1.1 Score=34.17 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLE 99 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~e 99 (163)
..+.+|+.++..+-++-..|+..+..+-+....|.-||..||.++.+
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 35789999999999999999999999999999999999999999988
No 81
>PF15294 Leu_zip: Leucine zipper
Probab=90.49 E-value=1.2 Score=38.77 Aligned_cols=45 Identities=29% Similarity=0.376 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
|..++..|+.||..|+.++..+..++.....|+..|.+++.+|+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999999988888877
No 82
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=90.32 E-value=4.8 Score=28.90 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=40.2
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQ-VDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 53 ~~l~eLe~q-v~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
..++.++.+ -..|..+-..|...+..|..++..+..||..|+.+-.-|+.-+..|-.
T Consensus 8 ~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 8 EDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 556777777788888888888888888888888887777776666643
No 83
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.79 E-value=6.3 Score=34.91 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
+|...+..|+.+|..|+.++.....++..|..+|..||.....++.
T Consensus 24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~ 69 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQA 69 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444433333
No 84
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=89.27 E-value=1.8 Score=32.18 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=24.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
++..++..++++...+..+|..|+.++..|+.....+.++..
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 344444444444555667777777777777765445555544
No 85
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.98 E-value=16 Score=33.71 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=55.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 041765 32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL----DSL 107 (163)
Q Consensus 32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl----~~l 107 (163)
++++-+.++=+.-.++....++....|+.++..++.+...+..++.........+...+..+...+..|..+- ..|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666777778888888888888877777776666666666666666666665555433 344
Q ss_pred HHHHHHHhc
Q 041765 108 NDILNFINT 116 (163)
Q Consensus 108 ~~il~~~~~ 116 (163)
-.+|..+..
T Consensus 118 a~~L~A~~r 126 (420)
T COG4942 118 AEQLAALQR 126 (420)
T ss_pred HHHHHHHHh
Confidence 455555543
No 86
>PRK00736 hypothetical protein; Provisional
Probab=88.92 E-value=5.1 Score=27.60 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
+++.+||.++.-.+.-...| ...+..-..+...|..++..|..++..
T Consensus 5 ~Ri~~LE~klafqe~tie~L-------n~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEEL-------SDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777766555444333 333333333445555555555555544
No 87
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.88 E-value=5.7 Score=27.12 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
.+..++...+..|..+.+++.....+...|..+...|+.++.+++.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555566677788888888877777777777777777777777654
No 88
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=88.43 E-value=13 Score=30.83 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=50.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 33 KRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 33 k~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
|+-++..-.+-..|.-..-+.++..|...+..-+..-.....+-..+..+...|..|....++|+..|+.++..|+.-.
T Consensus 106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555666666777777666666666666666666666666777777777777777777666666544
No 89
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=88.11 E-value=12 Score=30.35 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQ-LLELTQRLDSLNDI 110 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraq-l~eL~~rl~~l~~i 110 (163)
..+|+.++..|+.++..|..++..++.++..++..+..+++. ......++..|...
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888889999999999999888888888887777664433 33344444444443
No 90
>PRK02119 hypothetical protein; Provisional
Probab=87.87 E-value=4.8 Score=28.14 Aligned_cols=52 Identities=6% Similarity=0.065 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
.++..-..|..++.....-+..|...-.....++..|+.+|..|..-+..+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445555555555555555544445555555666666666666555544
No 91
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=87.82 E-value=0.02 Score=51.39 Aligned_cols=69 Identities=26% Similarity=0.272 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 27 LAMDQRKRKRMQSNRESARR---SRMRKQKHLDDLIAQVDQLR-KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 27 ~~~deRk~rR~lsNReSARR---SR~RKq~~l~eLe~qv~~L~-~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
.+.+.|+..|+.+|+.+|.+ +|.||+.....|..+|+.|+ .+|.. |..++..|+.
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~---------------------l~~~is~Lqn 207 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSP---------------------LSPQISPLQN 207 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcc---------------------cCcccccccc
Confidence 36688999999999999999 99999999999999998877 44433 6777777777
Q ss_pred HHHHHHHHHHHHhc
Q 041765 103 RLDSLNDILNFINT 116 (163)
Q Consensus 103 rl~~l~~il~~~~~ 116 (163)
..+.++.++.....
T Consensus 208 e~~~l~~~l~~h~~ 221 (395)
T KOG1414|consen 208 EADHLEKELNTHRP 221 (395)
T ss_pred HHHHHHHHHhccCC
Confidence 77777777766543
No 92
>PRK09039 hypothetical protein; Validated
Probab=87.65 E-value=13 Score=32.96 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~ 98 (163)
+.-|..+++.|+.+...|...|..++++.......-..|+.++.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 93
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.44 E-value=17 Score=31.78 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccCCC
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR-------LDSLNDILNFINTSSGI 120 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r-------l~~l~~il~~~~~~~~~ 120 (163)
+..+.+..|+.+...|..|-..|..+...+.+.-...-.+.+.+.-++.++.+. +......|..+..++.+
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~ 138 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVY 138 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 344455555555555555555555555444444444444444444444444333 33444444445544443
No 94
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=87.42 E-value=18 Score=35.54 Aligned_cols=32 Identities=13% Similarity=0.247 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 76 VNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
+..+...+..+..+...+..++..+...+..+
T Consensus 450 l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l 481 (1164)
T TIGR02169 450 IKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 95
>PRK00295 hypothetical protein; Provisional
Probab=87.35 E-value=7.1 Score=26.86 Aligned_cols=46 Identities=4% Similarity=-0.009 Sum_probs=32.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 70 NQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 70 ~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
..|..++.....-+..|...-.....++..|+.+|+.|..-+..+.
T Consensus 8 ~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 8 TELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455556666666666666666667777888888888888777766
No 96
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=87.33 E-value=1.9 Score=36.34 Aligned_cols=7 Identities=14% Similarity=0.487 Sum_probs=3.2
Q ss_pred cCCCcCc
Q 041765 149 LNQPIMA 155 (163)
Q Consensus 149 ~~qpi~a 155 (163)
+++|+++
T Consensus 148 ~g~~Vv~ 154 (276)
T PRK13922 148 KGMPVID 154 (276)
T ss_pred CCCceEc
Confidence 3455443
No 97
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=87.31 E-value=0.87 Score=31.07 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=14.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 041765 70 NQILTSVNITTQHYMNIESENSVLRAQ 96 (163)
Q Consensus 70 ~~L~~~i~~l~~~~~~l~~EN~~Lraq 96 (163)
..|+.+|..|..+...|+.||..||..
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444555555555566666666653
No 98
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.17 E-value=16 Score=32.02 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=54.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 36 RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 36 R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
+....=+....-+..=.+.+..|+.+...|..+-.......+.+..+...+..|...|..++.-...+|..|..+
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444445555556677788888888777778888888888888888888888888888888888776653
No 99
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.02 E-value=4.9 Score=38.11 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 47 SRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 47 SR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
.|..-...+.+....+..++++...++.++..+......|..||..|+.++..++.
T Consensus 135 ~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 135 ERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33333344555666667777778888888888888888888888888888877764
No 100
>PRK02793 phi X174 lysis protein; Provisional
Probab=86.97 E-value=5.9 Score=27.56 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 65 LRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 65 L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
++..-..|..++.....-+..|...-.....++..|+.+|+.|..-+..+..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444445555555555555555555555555666666666666666655543
No 101
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=86.89 E-value=5.3 Score=30.27 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 041765 60 AQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQ 96 (163)
Q Consensus 60 ~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraq 96 (163)
.+|-.|+.--..|..++...++....|.+||.+|-+=
T Consensus 63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQY 99 (120)
T KOG3650|consen 63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQY 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 3444444444444444444444444555555555443
No 102
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=86.88 E-value=3.4 Score=37.28 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 041765 60 AQVDQLRKENNQILTSVNITTQHYMNIESENSVLR 94 (163)
Q Consensus 60 ~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lr 94 (163)
.+...|+.||..|+++++.|+.+++.| ||..|+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 356678889999999999998888888 666665
No 103
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.85 E-value=11 Score=34.62 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 40 NRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 40 NReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
++...++-=.++...+..-..+...|+++-..+..++..++.++.....++..++.++..+..++..|...-
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444444555555555555666666666666666666666666666666666666666666666665433
No 104
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=86.70 E-value=3.4 Score=34.47 Aligned_cols=45 Identities=16% Similarity=0.398 Sum_probs=33.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 67 KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
.||..|+..|..+.+.+..|..||..|+. |...++.|-++|..+.
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l~ 169 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERLT 169 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 57888888888777777777777777665 5666777777777764
No 105
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.67 E-value=11 Score=36.57 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNI-------ESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l-------~~EN~~Lraql~eL~~rl~~l~ 108 (163)
.+||.++..|+.|-.....++..++.+...+ ..+-..|..-|..++++-..|+
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE 607 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLE 607 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3566666666655555444444444433221 2234445455555544444443
No 106
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=86.30 E-value=7.8 Score=31.52 Aligned_cols=8 Identities=13% Similarity=-0.296 Sum_probs=3.1
Q ss_pred CCCCCCCc
Q 041765 15 DGQNSASE 22 (163)
Q Consensus 15 ~~~~sgs~ 22 (163)
.+..-+|+
T Consensus 55 ~YWsFps~ 62 (188)
T PF03962_consen 55 YYWSFPSQ 62 (188)
T ss_pred EEEecChH
Confidence 33433443
No 107
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=85.93 E-value=5.4 Score=40.55 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQ---HYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~---~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
.+.++++.|+..+..|+.||..|..+|..|.. ....|+..|..|...-.+++.-+..|+
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~ 588 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALN 588 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44578899999999999999999999998865 557778888888777777776666665
No 108
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.92 E-value=6.5 Score=33.86 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 041765 57 DLIAQVDQLRKENNQILTSV 76 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i 76 (163)
++..++..+.+||..|..++
T Consensus 139 e~kekl~E~~~EkeeL~~el 158 (290)
T COG4026 139 ELKEKLEELQKEKEELLKEL 158 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444433333
No 109
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=85.88 E-value=8.4 Score=25.90 Aligned_cols=34 Identities=9% Similarity=0.269 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 82 HYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 82 ~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
.+..++.||..|+..+.++.+.++.|-.+-..+.
T Consensus 15 ~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999988877766666554
No 110
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.74 E-value=11 Score=32.87 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
..+..++...+.+-.+|..++..+...+..+..+...|.+++.++
T Consensus 219 ~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 219 AEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333344444444444444333
No 111
>PRK04406 hypothetical protein; Provisional
Probab=85.73 E-value=8.6 Score=27.05 Aligned_cols=52 Identities=10% Similarity=0.152 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
.++..-..|..++.....-+..|...-.....++..|+.+|+.|.+-+..+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555555555555555555556666666666666555544
No 112
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=85.73 E-value=9.3 Score=27.62 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
...+..+-..|+.++.++..++..+..-+..
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555544443
No 113
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=85.69 E-value=9.7 Score=26.40 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
.+.....|..|+.....++...-..+..|..||..|+.++.++
T Consensus 24 ~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 24 HEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555555555555555555555554443
No 114
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.64 E-value=19 Score=29.73 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQ 71 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~ 71 (163)
+.++.+..++..++..+..
T Consensus 84 ~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 84 KRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 115
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=85.64 E-value=0.13 Score=46.28 Aligned_cols=44 Identities=34% Similarity=0.561 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQIL 73 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~ 73 (163)
++++++=..+||.||-++|.||+.....|+.+...+..+|..|.
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 56666669999999999999999999999999988888887764
No 116
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.54 E-value=9.9 Score=26.94 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
.|++++..|+..-..-...|..|...+......-..+++++.-|..++..++
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444433333344444444444444444555555555555554443
No 117
>PRK04325 hypothetical protein; Provisional
Probab=85.41 E-value=9.3 Score=26.70 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
.++..-..|..++.....-+..|...-.....++..|+.+|+.|.+-+..+.
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555555555555555555555556666666666666565554
No 118
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.40 E-value=14 Score=28.83 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQ 81 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~ 81 (163)
+-..+..|..++..|+.+...+...+..+..
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 119
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=85.18 E-value=5.5 Score=28.45 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 84 MNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 84 ~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
..+..||..|+.++..|.++|+.+..=.+..+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~ 34 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQIKE 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45667888888888888888888776555444
No 120
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.06 E-value=34 Score=32.61 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
.+..|+..|..+...+..++..|+.+...|..+.
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 121
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=85.00 E-value=12 Score=26.99 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=49.7
Q ss_pred HhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 041765 39 SNRESARRSRMRKQ------KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIES---ENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 39 sNReSARRSR~RKq------~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~---EN~~Lraql~eL~~rl~~l~~ 109 (163)
.|.+..+.+-.++. ..+-+|..+...+..+-+.|+.+-+.+..++..+.. +-..|++++.++..++..+..
T Consensus 9 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 9 ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 35555555544442 344455555666666666666666666666655554 467788888888888888888
Q ss_pred HHHHHhc
Q 041765 110 ILNFINT 116 (163)
Q Consensus 110 il~~~~~ 116 (163)
.+..++.
T Consensus 89 ~~~~~e~ 95 (108)
T PF02403_consen 89 QLKELEE 95 (108)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
No 122
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.92 E-value=12 Score=35.87 Aligned_cols=68 Identities=16% Similarity=0.279 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
.+.++.+++|..++..|..+-..+...+..++..+..+..+....+.+..+|...+.-...++.++..
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d 391 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPD 391 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566777788888888888777777777777777778888888888888887777777777666543
No 123
>PRK00736 hypothetical protein; Provisional
Probab=84.85 E-value=9.3 Score=26.27 Aligned_cols=46 Identities=9% Similarity=0.149 Sum_probs=29.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
.|..++.....-+..|...-..-..++..|+.+|+.|.+-+..+..
T Consensus 9 ~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 9 ELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555555555556555555566678888888888887776654
No 124
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.68 E-value=4.3 Score=34.21 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
|+++.+.+..+-..|..++......+.....++..|+.|.+.+......|
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 34444444444444555555555555555555555555555555444333
No 125
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=84.59 E-value=27 Score=30.66 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=41.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------H-----------HHHHHHHHHHHHHH
Q 041765 33 KRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNIT-------T-----------QHYMNIESENSVLR 94 (163)
Q Consensus 33 k~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l-------~-----------~~~~~l~~EN~~Lr 94 (163)
-+.+-+.-|+--..+..--.++-.+|+.++.+++..|..|..+++.+ + ++...|+.+|+.++
T Consensus 25 ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~ 104 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTH 104 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555554444444443332 2 22445677777777
Q ss_pred HHHHHHHHHHHHHH
Q 041765 95 AQLLELTQRLDSLN 108 (163)
Q Consensus 95 aql~eL~~rl~~l~ 108 (163)
+....|+..+..|.
T Consensus 105 aikeql~kyiReLE 118 (333)
T KOG1853|consen 105 AIKEQLRKYIRELE 118 (333)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766655554
No 126
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.46 E-value=12 Score=32.84 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
.+..+..++..+..++......+..++.+...+...-....++..++...++.+..++
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555555555544443
No 127
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.43 E-value=15 Score=32.48 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=16.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 68 ENNQILTSVNITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 68 EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~ 98 (163)
|...|..++-.+++++..+..||..|..++.
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334555555555555555556555554443
No 128
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=84.35 E-value=4.4 Score=38.67 Aligned_cols=64 Identities=22% Similarity=0.190 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
.+|.+-.||-+ ||=|...-.++-.+.+ +..-..|..+++.+.+.++.|..||..||.|+.+|..
T Consensus 274 ~~d~kv~krqQ---------RmIKNResA~~SRkKK--KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 274 GSDIKVLKRQQ---------RMIKNRESACQSRKKK--KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred ccCHHHHHHHH---------HHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 45777777643 3444444444432211 1223346777777777777777777777777777654
No 129
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.30 E-value=13 Score=33.62 Aligned_cols=58 Identities=12% Similarity=0.231 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
.|.++.++.+.++.+.|+.--+.|..-.+.+....+.|+.+-..|...+.-|..+++.
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344555666665555555555555555555555555555555555555555555444
No 130
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=84.24 E-value=22 Score=31.44 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 41 RESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 41 ReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
-|+++|-....+.++.+++.-...-+..-..-..+-..+.+++..+.+||-.|++|+.....+...-..++--+
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini 254 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI 254 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45667766677777777776554444444445556677889999999999999999999999888777554433
No 131
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=84.09 E-value=7.4 Score=33.18 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQ 71 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~ 71 (163)
+..+||+++..+..+...
T Consensus 94 Rn~ELE~elr~~~~~~~~ 111 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISS 111 (248)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345677766655544444
No 132
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=83.98 E-value=6.4 Score=29.86 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
+...|-.+.-+|...+..|.++...+..||-.||.+-.-|.+-+..|-+.
T Consensus 57 EKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 57 EKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 33445555555666666666666666666666666655555544444433
No 133
>PHA03011 hypothetical protein; Provisional
Probab=83.84 E-value=10 Score=28.84 Aligned_cols=54 Identities=28% Similarity=0.331 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
..+++|..+...|-.|-+-+..++..+..-.+.-..|-.-||+++..|+..+..
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 457777778777877777777777777776666667777777777777766543
No 134
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=83.76 E-value=4.2 Score=26.36 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=21.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 73 LTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 73 ~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
...+..+...+..|..+|..|+.++..|..
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666777778888888888777764
No 135
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=83.76 E-value=5.7 Score=26.70 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=19.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
+..++..++.++..+..+|..|+.++..|+.--..+..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~ 60 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKV 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 334444444455555566666666666663333333333
No 136
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=83.38 E-value=7.2 Score=33.17 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
+-+-+|..++..|+.|...|+-.++.+..++..+......|-.++..+
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888877777766666666665555555543
No 137
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=83.28 E-value=13 Score=26.06 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
-++++...+..++.+-..+..+++.+..+...+..+-..-...+..+-+.+..+.+.++.+++
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~~ 89 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELNS 89 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 355666666666666666666666666665556555555566666666666666666665553
No 138
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.24 E-value=15 Score=35.26 Aligned_cols=43 Identities=14% Similarity=0.385 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHhHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRK------------------------ENNQILTSVNITTQHYMNIESENS 91 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~------------------------EN~~L~~~i~~l~~~~~~l~~EN~ 91 (163)
..+..+|.+|+..+..+.. .|..|+.++..+...+..|..+|.
T Consensus 118 ~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~ 184 (617)
T PF15070_consen 118 QEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENM 184 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566777777776666543 455566666666666666666663
No 139
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.15 E-value=31 Score=36.47 Aligned_cols=88 Identities=8% Similarity=0.071 Sum_probs=39.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHH
Q 041765 32 RKRKRMQSNRESARRSRMRKQK-------------HLDDLIAQVDQLRKENNQILTSVNIT-------TQHYMNIESENS 91 (163)
Q Consensus 32 Rk~rR~lsNReSARRSR~RKq~-------------~l~eLe~qv~~L~~EN~~L~~~i~~l-------~~~~~~l~~EN~ 91 (163)
++.+.+.+.++.|++.+.-+.+ .+++|+.++.....+...+..++..+ .+++..+..+..
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677666544332 22333333333333333333333333 333334434444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 041765 92 VLRAQLLELTQRLDSLNDILNFINTSSG 119 (163)
Q Consensus 92 ~Lraql~eL~~rl~~l~~il~~~~~~~~ 119 (163)
.+...+..++.++..+...+..+.....
T Consensus 401 elqqel~elQ~el~q~qq~i~~Le~~~~ 428 (1486)
T PRK04863 401 DYQQALDVQQTRAIQYQQAVQALERAKQ 428 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555444433
No 140
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=83.02 E-value=18 Score=32.32 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVL---------------RAQLLELTQRLDSLNDI 110 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~L---------------raql~eL~~rl~~l~~i 110 (163)
..|..++..|+.+|..|...+..+..+++.+..+...+ |++|.+|+..|..+...
T Consensus 140 ~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 140 SRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence 34444444555555555555555555554444444333 55666666666665553
No 141
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=82.84 E-value=6.2 Score=31.54 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
.+|..+|..|+.+|..|...+..+..+...++.....|+.+...+..+-.
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~ 141 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERER 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence 35666777777777777776666666666677666677766666665543
No 142
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=82.59 E-value=16 Score=26.42 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=51.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 31 QRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 31 eRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
.++..+.+.+=+++=..|--+.....+++.++..|......|-.++.....++..|+.-|..+...+...-
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666776666655555568999999999999988888888777777777777766666655443
No 143
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=82.55 E-value=12 Score=27.28 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 041765 65 LRKENNQILTSVNITTQ------HYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 65 L~~EN~~L~~~i~~l~~------~~~~l~~EN~~Lraql~eL~~r 103 (163)
+..+|..|..+|..|.. .+.....||..|+.++..|+.-
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666654 3456788999999998877653
No 144
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.53 E-value=29 Score=35.55 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQV-DQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 49 ~RKq~~l~eLe~qv-~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
.+..+.+.+++++. ..+..+-.++..++..|.++.+.++..+..|+++..++
T Consensus 375 d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 375 DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444433 33333333444444444555555555555554444433
No 145
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.36 E-value=7.5 Score=28.84 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 76 VNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
+..+.+++..++.+|..|+++...|..++..|+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455555555555555555555555543
No 146
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.35 E-value=21 Score=30.15 Aligned_cols=8 Identities=25% Similarity=0.177 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 041765 89 ENSVLRAQ 96 (163)
Q Consensus 89 EN~~Lraq 96 (163)
|-.+|.++
T Consensus 194 EydrLlee 201 (216)
T KOG1962|consen 194 EYDRLLEE 201 (216)
T ss_pred HHHHHHHH
Confidence 33333333
No 147
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=82.13 E-value=5.8 Score=35.38 Aligned_cols=49 Identities=12% Similarity=0.325 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 63 DQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 63 ~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
..|+..|.+|..+|.+-.+...-|+.-|.+=-.+++.|.+-+..|++.+
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEai 51 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAI 51 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444444444444444444455555444444433
No 148
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=82.00 E-value=1.8 Score=27.79 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~ 98 (163)
+|-+.|..+..++..++..+..|..||..||+++.
T Consensus 11 ~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 11 ELAKRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp -------------------HHHHHHHHHHHHHHHH
T ss_pred HHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34455666666666666666667777777776653
No 149
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=81.99 E-value=25 Score=29.11 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
..+..-...+..||..|...+..+.+.+..|+..+..|..+-..|...-..
T Consensus 152 ~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~ 202 (206)
T PF14988_consen 152 KSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWY 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555667777777777777777777777777777776666655443
No 150
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=81.88 E-value=15 Score=26.93 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
...++..+..+...+..||..|+.++..-+..-+.|-.+
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l 85 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKL 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555556666666665555554444433
No 151
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=81.78 E-value=35 Score=29.77 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITT 80 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~ 80 (163)
..++.+..++.+.+.+-..+..++....
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~ 234 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMK 234 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444443333
No 152
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=81.64 E-value=13 Score=31.62 Aligned_cols=8 Identities=0% Similarity=0.509 Sum_probs=3.2
Q ss_pred HHHHhccC
Q 041765 111 LNFINTSS 118 (163)
Q Consensus 111 l~~~~~~~ 118 (163)
+.++.++.
T Consensus 130 iRylqSY~ 137 (248)
T PF08172_consen 130 IRYLQSYN 137 (248)
T ss_pred HHHHhhCc
Confidence 34444433
No 153
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=81.62 E-value=13 Score=31.12 Aligned_cols=63 Identities=24% Similarity=0.411 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNIT--TQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l--~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
..+-+++.+++.++.+-..|..-+... .+....++.+....+.+++.+..+++.|.+.+++-.
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~st 196 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYST 196 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEE
Confidence 344466667777666666655544332 455667888888899999999999988888887643
No 154
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=81.60 E-value=9.6 Score=31.54 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 77 NITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 77 ~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
..|..++..+...|-.+..-+..|..++..+..-
T Consensus 178 ~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 178 RYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555554443
No 155
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=81.55 E-value=13 Score=36.64 Aligned_cols=66 Identities=20% Similarity=0.336 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.||+..+..|..++..+...+..++..|..+...+...+.++..|.+.+..|+.+|..-+..+.-.
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk 362 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKK 362 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 567777788888888888888888888888888888888888888888888777777766666543
No 156
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.43 E-value=13 Score=32.60 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCCC
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN---TSSGI 120 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~---~~~~~ 120 (163)
|..+|..|+..-..|...+..+...+...-.+-..+|..+..|+.++..|...|..-. .-+|+
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGl 175 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGL 175 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCe
Confidence 4445555555555555555555555555555666777777888888888887776432 34565
No 157
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=81.28 E-value=11 Score=25.32 Aligned_cols=26 Identities=19% Similarity=0.518 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
+.+.+|+.+++.++.+|..|..++..
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 158
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=81.26 E-value=6.9 Score=26.95 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=24.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 68 ENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 68 EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
....+..++..+.++...+..||..|+.++..|..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455566666667777778888888888887765
No 159
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.11 E-value=28 Score=34.90 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 47 SRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 47 SR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~ 98 (163)
-+.+-.-.++.|...+..|+-||.+|..+++.....+..+..++..|+.|+.
T Consensus 665 lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 665 LIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445556666666666666666666666666666666666666666665
No 160
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.07 E-value=17 Score=25.85 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
++.|+.+|.+.-.-..-|..+|..|+++...|..|-..++.....|..+
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 4566666655433333344444444444333333333333333333333
No 161
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=80.97 E-value=21 Score=29.01 Aligned_cols=43 Identities=21% Similarity=0.306 Sum_probs=22.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 70 NQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 70 ~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
..|..-+..|.+++......|..|...+..|+..+..+.+-|.
T Consensus 77 ~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 77 EELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555444433
No 162
>PRK03918 chromosome segregation protein; Provisional
Probab=80.93 E-value=29 Score=33.52 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 041765 90 NSVLRAQLLELTQ 102 (163)
Q Consensus 90 N~~Lraql~eL~~ 102 (163)
-..|..++..|..
T Consensus 682 ~~~l~~~i~~l~~ 694 (880)
T PRK03918 682 LEELEKRREEIKK 694 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 163
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.61 E-value=31 Score=28.46 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKE 68 (163)
Q Consensus 55 l~eLe~qv~~L~~E 68 (163)
+..|..++..++.+
T Consensus 72 ~~~l~~~i~~~~~~ 85 (302)
T PF10186_consen 72 LERLRERIERLRKR 85 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 164
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=80.58 E-value=26 Score=32.29 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
++..+-..-+..|++|..+|..+|..-.++....+.+...|..++.+-+.|-.++..+
T Consensus 132 qdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~m 189 (561)
T KOG1103|consen 132 QDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLM 189 (561)
T ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445678999999999999999999999999999999998887776666543
No 165
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=80.49 E-value=15 Score=32.30 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041765 87 ESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 87 ~~EN~~Lraql~eL~~rl~~l 107 (163)
..|..++..++..|..++..|
T Consensus 290 ~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 290 SGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHCCHCHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHhccc
Confidence 344444444444444444443
No 166
>smart00340 HALZ homeobox associated leucin zipper.
Probab=80.47 E-value=4.4 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 77 NITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 77 ~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
..|+.-++.|..||..|..++.+|+.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666778888999999999888864
No 167
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=80.40 E-value=4.1 Score=31.24 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=20.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 67 KENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
.|..-|+.+|.+|.++...|+.||..||.-+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444556666666666777888888887644
No 168
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=80.33 E-value=22 Score=33.73 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNIT-------TQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l-------~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
++.++.||.++..|+.+-..|..++..- ...+..+..|-..++.++.++-.++..|.+.+.-++
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888887777776432 114667777888899999999999999888777665
No 169
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.31 E-value=15 Score=30.11 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 041765 94 RAQLLELTQRLDSL 107 (163)
Q Consensus 94 raql~eL~~rl~~l 107 (163)
++++..+..+|..|
T Consensus 92 k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 92 KARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 170
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.11 E-value=27 Score=27.47 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
.+.......+++...|..++..++.....+..|-..|+.+-..|...++....-+.-+..
T Consensus 42 ~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 42 CLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444555555555555555555555555555555555555554444443
No 171
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.07 E-value=53 Score=30.79 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
.+.|+.++.+|..||..|+..+..|...+..+..+-..+-.++..|+.++.
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 345556677777888888888888887777777777666666655555543
No 172
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=80.03 E-value=1 Score=33.35 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
.+|+.|...+..|..+|..|..++..+..++..+......|+..+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 577788888888887777777666655555555444444444443
No 173
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=80.00 E-value=3.3 Score=31.88 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNIT 79 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l 79 (163)
|..-+++|.+++..|+-||..|+.++..-
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45668999999999999999999988653
No 174
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=79.57 E-value=28 Score=27.38 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=24.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
..+++..+.++ +.|+.+|..|.+|+..|...+..+..=++.+
T Consensus 66 ~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 66 QSCRVKRVQQK-HELEKEKAELQQQVEKLKEENSRLRRELDAY 107 (135)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 5677777777777777766666555444443
No 175
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.53 E-value=30 Score=29.28 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
.++.|+..++..++.+...+..+...|..|..++.+|..
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 344444445555555555555555555555555544443
No 176
>PHA03162 hypothetical protein; Provisional
Probab=79.34 E-value=1.5 Score=34.40 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSV 76 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i 76 (163)
+++.-+++|.+++..|+-||..|+.++
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999999998
No 177
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.22 E-value=20 Score=33.44 Aligned_cols=63 Identities=17% Similarity=0.123 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
.|+...+..+.++++.|+.||-+ .+++.|......+...-..|++.+.+|....+.+.+.|..
T Consensus 281 ~rrhrEil~k~eReasle~Enlq--mr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~ 343 (502)
T KOG0982|consen 281 ERRHREILIKKEREASLEKENLQ--MRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEA 343 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 44445555555555666555533 4445555555555555666666666665555555544443
No 178
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=78.60 E-value=14 Score=34.62 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
-+..|.+-+.+.++|+++-..|+.+++.+..+... +.++|.+|...+..|...+.
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~d-------le~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGD-------DQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------HHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777776666555544444444 44445555555555554443
No 179
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.55 E-value=20 Score=33.50 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQ-HYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~-~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
-+.|.++-++|++....+-.+|+..-+ .-..+..|-..|+.+...++..|..|...|.-+
T Consensus 82 N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 82 NEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667777777777777777655443 345677788888888888888888888777544
No 180
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=78.47 E-value=29 Score=30.71 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
|-++.+..|..+|..|+..-..+..+...+.+++.....-...|.+++.+|+++...+..+|.-
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555566677777777766665555543
No 181
>PF15058 Speriolin_N: Speriolin N terminus
Probab=78.27 E-value=6.4 Score=32.82 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQ 96 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraq 96 (163)
.+.|..++++|-.||.+|++.+. |-.||..||.=
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLksa 40 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKSA 40 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHH
Confidence 35677777777788888777664 45566666654
No 182
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=77.92 E-value=31 Score=35.35 Aligned_cols=60 Identities=17% Similarity=0.367 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+.|..+|+.++..+..|..+.+.+.+.+...+.|-..++..+..|+.+++.....|..+.
T Consensus 404 ~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 404 EQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444443
No 183
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=77.81 E-value=15 Score=26.87 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESE 89 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~E 89 (163)
.-+.+|..|+.+|..|..++..|..++.....|
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333333
No 184
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=77.79 E-value=46 Score=28.81 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 59 IAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 59 e~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
..-+-....+|..+..++..-.+....++.+...|++++..|+.......+++
T Consensus 178 ~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~i 230 (258)
T PF15397_consen 178 QPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVI 230 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHh
Confidence 33445556899999999999999999999999999999999999888777766
No 185
>PF14282 FlxA: FlxA-like protein
Probab=77.64 E-value=26 Score=25.88 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041765 84 MNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 84 ~~l~~EN~~Lraql~eL~~r 103 (163)
..|..+...|.+||..|...
T Consensus 54 q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 54 QLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 186
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=77.58 E-value=24 Score=25.53 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=54.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 36 RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 36 R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
++...+......=..|...+..|+.++..|..|-..-..++-.+......+..|+..|+.++..=..-+..|.+
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45556666666777888888999999999988888877777777777788888888888777654444444443
No 187
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.56 E-value=33 Score=35.08 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
++.+|+.+-+.+..++..+++.+....-.+..|+.+...|..+|
T Consensus 449 ~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L 492 (1041)
T KOG0243|consen 449 QIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKL 492 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444433344444444433333333
No 188
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=77.10 E-value=21 Score=28.35 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041765 84 MNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 84 ~~l~~EN~~Lraql~eL~~rl 104 (163)
..+..++..|+.++..|+++|
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 189
>PRK14127 cell division protein GpsB; Provisional
Probab=76.48 E-value=9.3 Score=28.91 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 81 QHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
..|..+..||..|+.++..|..+|..+..-+..
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455566666666666666666666666665543
No 190
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=76.48 E-value=29 Score=31.43 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 81 QHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
..+..+......|.+++.+|..++..|.+.+...
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555556666666666666666555554
No 191
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=76.46 E-value=41 Score=27.62 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
.-|++-|+.|+.+|.+.+.-..+....+...+.-..........-+.++..|+.-|+....-+..+.
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~ 129 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAE 129 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999988888777777777666666666666666666666666666666555543
No 192
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=76.20 E-value=46 Score=28.00 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=46.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-h---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 33 KRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLR--------KENNQILT-S---VNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 33 k~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~--------~EN~~L~~-~---i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
|.||+...-.+-|.-|.-=+.=.++|..-|-+-+ .-|..++. . +..|.++...-+.|-..|++++..|
T Consensus 59 k~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL 138 (229)
T KOG1319|consen 59 KDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTAL 138 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544444545555444445566666554322 12222222 2 3445666666777788888888877
Q ss_pred HHHHHHHHHHHHHHhc
Q 041765 101 TQRLDSLNDILNFINT 116 (163)
Q Consensus 101 ~~rl~~l~~il~~~~~ 116 (163)
+-=-...+.++.....
T Consensus 139 ~iIk~~YEqM~~~~qd 154 (229)
T KOG1319|consen 139 KIIKVNYEQMVKAHQD 154 (229)
T ss_pred HHHHHHHHHHHHhccc
Confidence 6655555666655543
No 193
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=76.19 E-value=36 Score=31.72 Aligned_cols=54 Identities=26% Similarity=0.239 Sum_probs=33.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 041765 67 KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGI 120 (163)
Q Consensus 67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~~ 120 (163)
-||..|...+..-.+.+.....||..|.+.-.+|..||..--..|.-+-.+.|.
T Consensus 442 LEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGg 495 (593)
T KOG4807|consen 442 LENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGG 495 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCC
Confidence 345555555555555555666777777777778877777666666655445443
No 194
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=75.98 E-value=18 Score=31.56 Aligned_cols=63 Identities=27% Similarity=0.383 Sum_probs=42.2
Q ss_pred HHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 36 RMQSNRESA-RRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 36 R~lsNReSA-RRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
+-++|+|.. +.+|.||+. |..++..|+.... -..++..|++++..+++|+.+..+++..++.+
T Consensus 131 K~IR~~E~sl~p~R~~r~~----l~d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRK----LQDEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHH----HHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 557888865 445555554 3344445544332 24578889999999999999999998877654
No 195
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=75.97 E-value=42 Score=27.47 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
.+....|+..|+..+..+.+.+....
T Consensus 154 ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 154 KEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544444443
No 196
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=75.79 E-value=48 Score=28.01 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCC
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMN-------IESENSVLRAQLLELTQRLDSLNDILNFINTS-SGI 120 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~-------l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~-~~~ 120 (163)
.....+|.++..+...|..|-.....++..+.+.+.. .+.|....+..+..+...+.-|.+-++.+-.. -|+
T Consensus 28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl 107 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGL 107 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455778888888888877777666665555544444 45555566666666666666666666666444 666
Q ss_pred CCC
Q 041765 121 LDT 123 (163)
Q Consensus 121 ~~~ 123 (163)
...
T Consensus 108 ~~L 110 (230)
T PF10146_consen 108 EPL 110 (230)
T ss_pred CCC
Confidence 443
No 197
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=75.70 E-value=48 Score=27.99 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQH 82 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~ 82 (163)
+-+..+..|..++..|+..|..|...+..+...
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 344455666666666666666666666555433
No 198
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.35 E-value=51 Score=28.15 Aligned_cols=9 Identities=11% Similarity=0.102 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 041765 57 DLIAQVDQL 65 (163)
Q Consensus 57 eLe~qv~~L 65 (163)
.|..++..+
T Consensus 93 aL~~E~~~a 101 (239)
T COG1579 93 ALNIEIQIA 101 (239)
T ss_pred HHHHHHHHH
Confidence 333333333
No 199
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=75.34 E-value=24 Score=31.66 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTS 117 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~ 117 (163)
++++.|+.++..|+.+-.+|..++.... ........|..|+..+..++..+.+++..-...
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~ 302 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAEYGDE 302 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 5667777777777776666666554333 445556667888888888888888877665443
No 200
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=75.06 E-value=29 Score=33.07 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~ 98 (163)
++.+..+..+..++..||..|...|..+.++...+..|+..|.+.+.
T Consensus 218 ~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq 264 (596)
T KOG4360|consen 218 QEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQ 264 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677777888888888888777777777776655543
No 201
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.86 E-value=14 Score=26.63 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=20.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 68 ENNQILTSVNITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 68 EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~ 98 (163)
.+..|..++..+..+...+..+|..|+.++.
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444566666666666777777777776654
No 202
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=74.82 E-value=13 Score=33.30 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
|..+++.+.+++..++.....+...+..+..++..+..-|.-+
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666555555555555555555554444443
No 203
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=74.74 E-value=37 Score=27.05 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=17.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 68 ENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 68 EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
++..+..++..++.++...+.|...|+.|.+.|..
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455555555555555555555555555443
No 204
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=74.70 E-value=26 Score=24.36 Aligned_cols=57 Identities=11% Similarity=0.145 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
.|...+.+|+..|..|...+....++.+.+......-.+.+..|+-.++.-..++..
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e~ 58 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKEA 58 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 467788888888999988888888888888877777777777777666665555543
No 205
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=74.38 E-value=44 Score=29.54 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNI--------------TTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~--------------l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.|-++.+++-..++..|+.||+.|....+. -+.++..++..+...+.++..|.++|..+..=|...
T Consensus 49 qKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 49 QKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555666666666665554444 455667778888888999999999999988888876
Q ss_pred hccCC
Q 041765 115 NTSSG 119 (163)
Q Consensus 115 ~~~~~ 119 (163)
....+
T Consensus 129 Q~~~~ 133 (307)
T PF10481_consen 129 QQAAS 133 (307)
T ss_pred HHhhc
Confidence 65544
No 206
>PRK10132 hypothetical protein; Provisional
Probab=74.35 E-value=10 Score=28.51 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYM-NIESENSVLRAQLLE 99 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~-~l~~EN~~Lraql~e 99 (163)
..+++.+++.|..+-..|...+..+-.... .-..+...||.++..
T Consensus 7 ~~~~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~ 52 (108)
T PRK10132 7 RNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQA 52 (108)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 346777777777777777777665543322 222334555555443
No 207
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=74.32 E-value=49 Score=29.47 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 42 ESARRSRMRKQKHLDDLIAQVDQLRKENNQ 71 (163)
Q Consensus 42 eSARRSR~RKq~~l~eLe~qv~~L~~EN~~ 71 (163)
+..|.-|..=+-.++.|..+...|+.....
T Consensus 19 e~cq~ErDqyKlMAEqLqer~q~LKkk~~e 48 (319)
T PF09789_consen 19 EKCQSERDQYKLMAEQLQERYQALKKKYRE 48 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555544433
No 208
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=74.28 E-value=22 Score=32.66 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 40 NRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 40 NReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
--++|..-|+|--+--...+..++.+..|...|+.+++..+....-|..|+..|+.-+..|.+-.+.+..
T Consensus 225 ~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 225 GEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred ChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 3456677777777777778888888888888899988888888888888888888888888877776653
No 209
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=74.20 E-value=35 Score=26.31 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKE 68 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~E 68 (163)
..+.+|+.+|..|..|
T Consensus 14 ~ev~glq~K~~~L~~e 29 (120)
T PF10482_consen 14 KEVQGLQNKLLELKKE 29 (120)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 3344444444444443
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.14 E-value=79 Score=29.74 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=41.8
Q ss_pred HHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 041765 35 KRMQSNRESARRSRMRKQK----HLDDLIAQVDQLRKENNQILTSVNITTQHY----MNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 35 rR~lsNReSARRSR~RKq~----~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~----~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
+-..+|=++++.+=.+|.+ .++.++.+...++.+|..|.+.......++ +.....+.....++.+|+.+|..
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666777777666654 345666677777777777666555444433 33334444455555555555544
Q ss_pred H
Q 041765 107 L 107 (163)
Q Consensus 107 l 107 (163)
|
T Consensus 447 l 447 (493)
T KOG0804|consen 447 L 447 (493)
T ss_pred H
Confidence 3
No 211
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=74.03 E-value=66 Score=28.79 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=52.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHhHHHHHHHHHHHHHHHHH
Q 041765 31 QRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRK------------------ENNQILTSVNITTQHYMNIESENSV 92 (163)
Q Consensus 31 eRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~------------------EN~~L~~~i~~l~~~~~~l~~EN~~ 92 (163)
.+..++++++|...-..=.||-.++.-=+..+.+|+. ..--|..++..|.+++..++.|...
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~ 200 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEI 200 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899988777767775544333445555542 2223555666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 93 LRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 93 Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
++..|.--+.+-.-|+++|+-++.
T Consensus 201 ~~k~L~faqekn~LlqslLddani 224 (323)
T PF08537_consen 201 TKKDLKFAQEKNALLQSLLDDANI 224 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 666666666666667777766543
No 212
>PHA03155 hypothetical protein; Provisional
Probab=73.97 E-value=4.8 Score=30.90 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
.-+++|.+++..|+-||..|+.++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34799999999999999999999854
No 213
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=73.96 E-value=48 Score=27.79 Aligned_cols=8 Identities=50% Similarity=0.945 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 041765 65 LRKENNQI 72 (163)
Q Consensus 65 L~~EN~~L 72 (163)
+.+||..|
T Consensus 74 l~~en~~L 81 (276)
T PRK13922 74 LREENEEL 81 (276)
T ss_pred HHHHHHHH
Confidence 33333333
No 214
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=73.92 E-value=6.3 Score=28.80 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVN 77 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~ 77 (163)
|+++++.|...+..++.+|..|..++.
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~ 104 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQ 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655555555543
No 215
>PRK02224 chromosome segregation protein; Provisional
Probab=73.87 E-value=90 Score=30.30 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 041765 55 LDDLIAQV 62 (163)
Q Consensus 55 l~eLe~qv 62 (163)
+.+|..++
T Consensus 511 l~~l~~~~ 518 (880)
T PRK02224 511 IERLEERR 518 (880)
T ss_pred HHHHHHHH
Confidence 33333333
No 216
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=73.76 E-value=57 Score=33.67 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 041765 62 VDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGI 120 (163)
Q Consensus 62 v~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~~ 120 (163)
+.++-..|.+|..++...+++...+..+|..-+.++..+++.+..+++.++.+..+..+
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~L 318 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNAL 318 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 44455679999999999999999999999999999999999999999999998866554
No 217
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=73.73 E-value=48 Score=27.70 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 40 NRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 40 NReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
-=+.+.+.|....++.++|+.+...|+.+-..|+.++..
T Consensus 103 ~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k 141 (203)
T KOG3433|consen 103 SIENRKAGREETEERTDELTKKLNSLKKILESLRWELAK 141 (203)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555544444444433
No 218
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=73.71 E-value=61 Score=32.84 Aligned_cols=65 Identities=22% Similarity=0.245 Sum_probs=29.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 37 MQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 37 ~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
..+--++++.+-....+...+|..++..+..+-..+..+.......+..++.|...|-.++++|+
T Consensus 450 i~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 450 IQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555444444444444444444444444444433333333
No 219
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=73.66 E-value=71 Score=31.09 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNIT 79 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l 79 (163)
.+..+|+..+.+|++++..|..++..+
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444443
No 220
>PRK02224 chromosome segregation protein; Provisional
Probab=73.41 E-value=69 Score=31.10 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 84 MNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 84 ~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
..+..+-..|+..+.++...+..+...+..+.
T Consensus 415 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 415 EELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 221
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=73.21 E-value=13 Score=36.01 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
+|-++|.+|.-|+..|+-++...++.-..|+..+..|..++..++
T Consensus 326 DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k 370 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAK 370 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888877777776655554555444444444444333
No 222
>PHA02562 46 endonuclease subunit; Provisional
Probab=73.18 E-value=58 Score=29.66 Aligned_cols=43 Identities=7% Similarity=0.050 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 65 LRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 65 L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
|+.+-..|......+...+..++.+-..+..++.++..+....
T Consensus 363 l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 363 VKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444444444333
No 223
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=73.13 E-value=34 Score=31.06 Aligned_cols=57 Identities=21% Similarity=0.366 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQH----YMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~----~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
+|..++..|+.+-+.+.+++..+... ...+..+-..|++++.+|..++..+.+-+..
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555443211 3455556666666666666666666554443
No 224
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=73.04 E-value=47 Score=26.64 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
|.+.|..++..++.+...|...+.....++.........+..++.....++..|..-
T Consensus 80 ~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~ 136 (158)
T PF09486_consen 80 YRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRA 136 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444433
No 225
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=73.00 E-value=29 Score=24.17 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
|.+=..++.+|..|=..|....-.+..-+..|.+.+..+-.++..|..++..+..-+..+..
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888888888888777777777777788888888888887777777766665543
No 226
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=72.95 E-value=29 Score=24.27 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
.+.++.++.++..+..|-..+..+.+.+.+........-..+-..+.++..-+..++
T Consensus 32 ~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 455666777777777777777777776666666666666666666666666666554
No 227
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=72.74 E-value=17 Score=32.53 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 81 QHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
..|..+..||..|++|+.+|+.++..+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~ 83 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSY 83 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444443
No 228
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.68 E-value=58 Score=27.52 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=24.6
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDL---IAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 51 Kq~~l~eL---e~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
|..|+++| ...+..|+..-.++..+.......+..+..|-..|+.++.+++..
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555 334444444444444444444444444444555555555555443
No 229
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=72.30 E-value=56 Score=30.69 Aligned_cols=44 Identities=16% Similarity=0.078 Sum_probs=26.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
++..++..+..+...+..+|..|+.....+..++..+++.....
T Consensus 386 q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~ 429 (493)
T KOG0804|consen 386 QLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA 429 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666677777766666666666666655543
No 230
>PRK11546 zraP zinc resistance protein; Provisional
Probab=72.27 E-value=30 Score=27.40 Aligned_cols=54 Identities=24% Similarity=0.172 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
+=......|..++-.-+.|-+.|...-..=.+++..|..|...|+.++.+++-.
T Consensus 58 ~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~ 111 (143)
T PRK11546 58 DFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVK 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666655555655655555444666778888888888888776553
No 231
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=72.15 E-value=39 Score=25.38 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.-|..-|-.-+..+..|...+..-.+.+..++.|+..|.-+-..|..|+..|..=+...
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555666677777777777778888888888888888888888887777654
No 232
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=72.15 E-value=52 Score=26.76 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIE--SENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~--~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
+-+...++.|++++.++......+.+.+..-. +.-..|...+.+++.++..+.-.+..
T Consensus 44 d~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~e 103 (165)
T PF09602_consen 44 DWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQE 103 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777788888777777777666643332 45566777777888777776655544
No 233
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.93 E-value=40 Score=33.91 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
++++|...+..|......+-.++..+.+....+..||..|.+++..+...-.+|.+.+..+.
T Consensus 651 ~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk 712 (970)
T KOG0946|consen 651 YHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLK 712 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445445555555555555555555555555555555555555555444444444444443
No 234
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.91 E-value=13 Score=32.98 Aligned_cols=16 Identities=0% Similarity=0.073 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 041765 59 IAQVDQLRKENNQILT 74 (163)
Q Consensus 59 e~qv~~L~~EN~~L~~ 74 (163)
..++..++.++.-|+.
T Consensus 92 rqkl~E~qGD~KlLR~ 107 (319)
T PF09789_consen 92 RQKLNEAQGDIKLLRE 107 (319)
T ss_pred HHHHHHHhchHHHHHH
Confidence 3333333333333333
No 235
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.88 E-value=1e+02 Score=31.23 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 89 ENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 89 EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.+-.|+++...|+.+|..||.-++.+
T Consensus 431 ~iv~~nak~~ql~~eletLn~k~qql 456 (1118)
T KOG1029|consen 431 WIVYLNAKKKQLQQELETLNFKLQQL 456 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444
No 236
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=71.85 E-value=28 Score=23.50 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITT 80 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~ 80 (163)
.++.|..+|..|.....+|...+..+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444433
No 237
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=71.83 E-value=24 Score=26.09 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNI------ESENSVLRAQLLELTQRLDSLNDILNFINTSSGI 120 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l------~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~~ 120 (163)
.+.+++.+--.+...|.+|..++..+..+...- ..+-..+..++..-+++..-+..|++.+=-++|+
T Consensus 18 ~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~lI~gSgV 90 (106)
T PF05837_consen 18 KLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQALIVGSGV 90 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555555555556666666655554443322 2333334444444445555555555555445554
No 238
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=71.71 E-value=53 Score=26.70 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
++..|..-|.-|+.++.........|..++..|..+...+++.|..-.
T Consensus 75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 75 RSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445444444444445555555555555555444444333
No 239
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=71.67 E-value=46 Score=36.03 Aligned_cols=67 Identities=16% Similarity=0.309 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
...++.++.|..+|..++.++..+........+++..|...-..+|+++..|..+-..|..+|....
T Consensus 657 ~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~ 723 (1822)
T KOG4674|consen 657 KKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQE 723 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567889999999999999999999999999999999999999999999999999999998887654
No 240
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=71.59 E-value=55 Score=26.82 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=31.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041765 32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHY 83 (163)
Q Consensus 32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~ 83 (163)
...++.+.+-+.-+.+=..-+.++..++.++..|+-++..|..++..+.+..
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555566666666666666666666655555544443
No 241
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=71.39 E-value=28 Score=32.88 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITT------QHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~------~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
++.||.++..|+.+-..|...+..-. .++..+..|-..++.++.++..++..+.+
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 630 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELEA 630 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999988888877774321 15677777778888888888888877763
No 242
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=71.31 E-value=17 Score=25.78 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 041765 66 RKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGI 120 (163)
Q Consensus 66 ~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~~ 120 (163)
..+...+..+++.+..+...+..||..|+.+...|.. ...|=..+...=|+
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~----~~rIe~iA~~~LgM 84 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSS----PSRIERIAREKLGM 84 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----HHHHHHHHHHcCCC
Confidence 3445566666777777888888888888888877643 44444444433344
No 243
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=71.13 E-value=23 Score=27.55 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLE 99 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~e 99 (163)
+-++....-+..|+.||..|+..+-.+++-|..=...-..|+.|+..
T Consensus 78 Kvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 78 KVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555566677788888888888888888777777777777777654
No 244
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=71.10 E-value=44 Score=31.32 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=61.8
Q ss_pred HHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 38 QSNRESARRSRM-RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 38 lsNReSARRSR~-RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
+.|....+-... -...|++-|...+.+....-..+...+..+.++...+..+-..|.-++..|.++-+.|...+..
T Consensus 416 Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 416 LTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred hcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445444555543 3568899999999888888888999999999999999999999999999999999988887765
No 245
>PRK10722 hypothetical protein; Provisional
Probab=71.05 E-value=32 Score=29.65 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 041765 81 QHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSG 119 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~ 119 (163)
.++..+..++..|+.++...+.+|..|.+|=..+.+-..
T Consensus 176 ~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLSsRk~ 214 (247)
T PRK10722 176 SELDALRQQQQRLQYQLELTTRKLENLTDIERQLSSRKQ 214 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 445555666666666666667777777777777765544
No 246
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=71.03 E-value=43 Score=32.74 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
..|-+||.+-.+|..|..++..++..+++.+.....|...|+-.++.-+..+..+.
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 46777888888888888888888888888888878888888877777666655443
No 247
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.99 E-value=1e+02 Score=31.17 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=27.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
|..+.+.-++.+..+.+.+..|..++..|..+++.|..-|..+
T Consensus 421 m~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 421 MLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDV 463 (1118)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3333333445555667777777777777777777777655544
No 248
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=70.78 E-value=50 Score=26.05 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRK---ENNQILTSVNITTQHY 83 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~---EN~~L~~~i~~l~~~~ 83 (163)
-.+..|.+...++..|+. .|..|..+|..++..+
T Consensus 31 ~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 31 NLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 344445555555555554 4444444444444333
No 249
>PF14645 Chibby: Chibby family
Probab=70.77 E-value=20 Score=27.18 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRA 95 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lra 95 (163)
.|..+..+|+.||+-|+-++..|-.-+....+|...+..
T Consensus 75 ~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek 113 (116)
T PF14645_consen 75 RLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEK 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666655555444444444433
No 250
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=70.77 E-value=37 Score=36.71 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 45 RRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 45 RRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
|..+.+.-..+.+|..++..|+.+-..|...+..+..++....+++..|+.....+..|.+.|..-
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666666666666666666666666666666666666665555555443
No 251
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=70.47 E-value=45 Score=25.37 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMN 85 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~ 85 (163)
..++++..++..+-.+-..|..+...+.+++..
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333333
No 252
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=70.45 E-value=45 Score=32.26 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENS-------VLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~-------~Lraql~eL~~rl~~l~~il 111 (163)
.+-++.++.++.++..-+.+-.....++..+..+-.-|++-.. .|+.-...|+.+++.++++-
T Consensus 96 ~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q~~~ 165 (632)
T PF14817_consen 96 QELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQDIQ 165 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555544555555554444444444343 34444444444555555543
No 253
>PRK04863 mukB cell division protein MukB; Provisional
Probab=70.44 E-value=1.2e+02 Score=32.41 Aligned_cols=61 Identities=8% Similarity=0.142 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
...+.+.+++.++..++.+-..+..++..+..++..+..+-..+..++..++..+..+..+
T Consensus 366 e~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~ 426 (1486)
T PRK04863 366 EQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERA 426 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555666666666666666666666677777777776666666554443
No 254
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=70.32 E-value=23 Score=26.43 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 79 TTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 79 l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
+.+++..+..++..|+..+.++.+++..
T Consensus 85 l~~~~~~~~~~~~~l~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 85 LEERLQELQQEIEKLKQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444433
No 255
>PF15556 Zwint: ZW10 interactor
Probab=70.14 E-value=68 Score=27.33 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 041765 41 RESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSG 119 (163)
Q Consensus 41 ReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~ 119 (163)
+++..+.|.-.+++.-.-+..+..|..-..+++.+..-..+++..+..|...|+.|...-+++|+.-...|..+-.-.|
T Consensus 115 qva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR~qtfLqLl~tLq~ 193 (252)
T PF15556_consen 115 QVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQRHQTFLQLLYTLQG 193 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444444444444444455555556666677778888899999999999999999999988888887755443
No 256
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.07 E-value=29 Score=31.40 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
+++++..+.++-..|+.+-+++..-...|+++...|.+|+..|+....-|+.
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444445555555555544444444444444444444444444444444443
No 257
>PRK14127 cell division protein GpsB; Provisional
Probab=69.98 E-value=20 Score=27.07 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 85 NIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 85 ~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
.|..+|..|++++.+++.++....
T Consensus 48 ~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 48 ELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 345556666666666666666443
No 258
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=69.94 E-value=42 Score=31.22 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=40.7
Q ss_pred HHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 36 RMQSNRESARRSRMR-----KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 36 R~lsNReSARRSR~R-----Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
-+..-|.+|++--.| =++++...|.++..|+.||.+|..+.-. ....++..++.....=..+++.+++|
T Consensus 26 ~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~------~~a~~~~~t~~~~~~en~~~r~~~ei 99 (459)
T KOG0288|consen 26 EKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR------EEATEKTLTVDVLIAENLRIRSLNEI 99 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444333 3567778888888888888887665432 22333334444444444556666666
Q ss_pred HHH
Q 041765 111 LNF 113 (163)
Q Consensus 111 l~~ 113 (163)
...
T Consensus 100 r~~ 102 (459)
T KOG0288|consen 100 REL 102 (459)
T ss_pred HHH
Confidence 554
No 259
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=69.88 E-value=26 Score=26.03 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041765 79 TTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 79 l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
+.+.+..++.+|..|..++..++
T Consensus 20 lRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 20 LRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555444443
No 260
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=69.83 E-value=86 Score=28.33 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 041765 85 NIESENSVLRAQLLELTQRLDSLNDILNFINTSSG 119 (163)
Q Consensus 85 ~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~ 119 (163)
.+..+...+++++..++.++......+....-..+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP 322 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKGVIKAP 322 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEECC
Confidence 45556666677777777777777776666543333
No 261
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=69.80 E-value=42 Score=24.75 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
..++..+|.++..|-. ...+..+.-....+.-+-..|.+++.-+...+.-|
T Consensus 48 ~~Rl~~lE~~l~~LPt-----~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 48 DRRLQALETKLEHLPT-----RDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444410 33444444444555555566666666555555444
No 262
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=69.76 E-value=74 Score=27.55 Aligned_cols=46 Identities=15% Similarity=0.272 Sum_probs=30.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 041765 36 RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQ 81 (163)
Q Consensus 36 R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~ 81 (163)
++..=+.-=+....+-..++..|+.+|..|.+.......++..|..
T Consensus 64 ~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 64 QLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555666777888888888888777777777766643
No 263
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=69.75 E-value=47 Score=27.57 Aligned_cols=14 Identities=14% Similarity=0.491 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKE 68 (163)
Q Consensus 55 l~eLe~qv~~L~~E 68 (163)
++.|+.++......
T Consensus 94 i~~lE~~l~ea~~~ 107 (237)
T PF00261_consen 94 IEELEQQLKEAKRR 107 (237)
T ss_dssp HHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 264
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=69.68 E-value=46 Score=30.23 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQ---HYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~---~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
|..++..|+.+-+.+.+++..+.. ....+..+-..|+.++.+|..++..+..-+..
T Consensus 40 l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 40 LQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443211 12345556666666666666666666655544
No 265
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.50 E-value=69 Score=28.37 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 041765 78 ITTQHYMNIESEN 90 (163)
Q Consensus 78 ~l~~~~~~l~~EN 90 (163)
.++++++.++++.
T Consensus 105 WIEEECHRVEAQL 117 (305)
T PF15290_consen 105 WIEEECHRVEAQL 117 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555543
No 266
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.46 E-value=1.2e+02 Score=29.69 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 041765 97 LLELTQRLDSLN 108 (163)
Q Consensus 97 l~eL~~rl~~l~ 108 (163)
+.+|..+|..+.
T Consensus 497 ve~L~~~l~~l~ 508 (652)
T COG2433 497 VEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 267
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=69.23 E-value=24 Score=24.19 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
....+..++.++..++.+|..|..++..
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555443
No 268
>PHA03161 hypothetical protein; Provisional
Probab=69.20 E-value=58 Score=26.11 Aligned_cols=72 Identities=13% Similarity=0.132 Sum_probs=37.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 39 SNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 39 sNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
.-+.+-|+.+..|+. .++...|..+........+++..|..--..-...-..|..++.+|+..|..--+.+.
T Consensus 42 ~t~~~lr~~~~~~~~--~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~ELe~l~ 113 (150)
T PHA03161 42 HTKKSLIKHENLKKQ--KSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFEIEALN 113 (150)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444433 456666666665555555555555443333444445566666666666655444444
No 269
>PTZ00464 SNF-7-like protein; Provisional
Probab=69.19 E-value=66 Score=26.78 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 041765 61 QVDQLRKENNQILTSVNITTQHYMNIESE 89 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~E 89 (163)
+...++..-..+...+..+.+....++.-
T Consensus 69 ~KK~~E~ql~~l~~q~~nleq~~~~ie~a 97 (211)
T PTZ00464 69 QKRMYQNQQDMMMQQQFNMDQLQFTTESV 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555444433
No 270
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=68.87 E-value=1e+02 Score=28.78 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=23.0
Q ss_pred HHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041765 38 QSNRESARRSRMR---KQKHLDDLIAQVDQLRKENNQILTSVNITTQH 82 (163)
Q Consensus 38 lsNReSARRSR~R---Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~ 82 (163)
..-|..++..+.+ |...|.+|.++..+|..|--........++..
T Consensus 37 ~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~ 84 (459)
T KOG0288|consen 37 VILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVD 84 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556543 44456666666666655544444443333333
No 271
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=68.84 E-value=6.6 Score=25.14 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=9.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 041765 34 RKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV 76 (163)
Q Consensus 34 ~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i 76 (163)
+++...|++=|+..-... ..+.+|+.++..|..||..|+..+
T Consensus 3 ~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 445555555555443332 335666777777777766665543
No 272
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=68.80 E-value=1.2e+02 Score=31.37 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
.+-.|-.|-.+.||+=-...-+++-.-++++..+.-.|+.++..|..++.+|.+.+..+...+..|+..-..|.-++..|
T Consensus 369 Lts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 369 LTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKL 448 (1195)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677788898888888888888999999999999999998888888888888777777777766666665555555
Q ss_pred HHHHHHH
Q 041765 108 NDILNFI 114 (163)
Q Consensus 108 ~~il~~~ 114 (163)
..-+...
T Consensus 449 ~~e~~t~ 455 (1195)
T KOG4643|consen 449 LEETSTV 455 (1195)
T ss_pred HHHHHHH
Confidence 5444433
No 273
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.75 E-value=77 Score=27.35 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 041765 29 MDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESEN--------SVLRAQLLEL 100 (163)
Q Consensus 29 ~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN--------~~Lraql~eL 100 (163)
.+-.+.+.........++....-+..+..++.++..++.+...+...+..+...+..+..+. ..+++++.++
T Consensus 179 ~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 258 (423)
T TIGR01843 179 EELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAEL 258 (423)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhccCCCCCC
Q 041765 101 TQRLDSLNDILNFINTSSGILDT 123 (163)
Q Consensus 101 ~~rl~~l~~il~~~~~~~~~~~~ 123 (163)
..++..+...+....-..++.|.
T Consensus 259 ~~~l~~~~~~l~~~~i~AP~dG~ 281 (423)
T TIGR01843 259 RERLNKARDRLQRLIIRSPVDGT 281 (423)
T ss_pred HHHHHHHHHHHhhcEEECCCCcE
No 274
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=68.53 E-value=81 Score=28.65 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESE---NSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~E---N~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
..+-.|..+..++..+-+.|+.+.+.+..++..+... -..|++++.+|..++..+...+..++.
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 94 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEA 94 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666667777777777777777766553322 235777777777777777777776654
No 275
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=68.47 E-value=37 Score=33.42 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 041765 62 VDQLRKENNQILTSVNITTQ---HYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 62 v~~L~~EN~~L~~~i~~l~~---~~~~l~~EN~~Lraql~eL~~rl 104 (163)
...|+.||-.|.+.+..|++ .|+.+.-|+.+|..++.-|..+|
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~ql 144 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQL 144 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666655555433 23444444444444444444433
No 276
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.28 E-value=1.3e+02 Score=33.06 Aligned_cols=72 Identities=13% Similarity=0.271 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 41 RESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYM-------NIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 41 ReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~-------~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
+.-..+.=.-....+++.+.+...|+.+...+..++..+...+. .++.|...+..++..|..++..+.+.+.
T Consensus 903 k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~ 981 (1930)
T KOG0161|consen 903 KQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENIS 981 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444445544444444444444444444433333 4444444444444444444444444443
No 277
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=68.19 E-value=31 Score=23.18 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
+-.+...-..+|.+..+++..+..+++
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555544443
No 278
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=67.91 E-value=34 Score=23.04 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 60 AQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 60 ~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
.++.+|..+.+.|..++..|...+..+..+-...+.+...-..||
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555444444444444433333333333333
No 279
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.72 E-value=1.2e+02 Score=31.30 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 41 RESARRSRMRKQKHLDDLIAQVDQLRK 67 (163)
Q Consensus 41 ReSARRSR~RKq~~l~eLe~qv~~L~~ 67 (163)
.++.+..+.+++..+..|+.++..+..
T Consensus 845 ~e~l~~e~e~~~~eI~~Lq~ki~el~~ 871 (1311)
T TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELKS 871 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555444444433
No 280
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=67.70 E-value=68 Score=29.61 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH---hHHHHHHHHHHHH
Q 041765 27 LAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQL----------------RKENNQILT---SVNITTQHYMNIE 87 (163)
Q Consensus 27 ~~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L----------------~~EN~~L~~---~i~~l~~~~~~l~ 87 (163)
...++|.+||+...-+-=||-|..=..++.+|-.-|-.. ...+..|++ ++..+..+-..|+
T Consensus 224 ~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le 303 (411)
T KOG1318|consen 224 ATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLE 303 (411)
T ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 355778888888889999999999898888887654333 122222322 2334444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 88 SENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 88 ~EN~~Lraql~eL~~rl~~l~~il 111 (163)
..|..|..++++|........-.+
T Consensus 304 ~~n~~L~~rieeLk~~~~~~~~~~ 327 (411)
T KOG1318|consen 304 STNQELALRIEELKSEAGRHGLQV 327 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcc
Confidence 777777777777766665544333
No 281
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=67.57 E-value=42 Score=25.00 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 65 LRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 65 L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
|...+..|..++..+.++...+...+..+.+++..|+.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444555555555555555555555443
No 282
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=67.50 E-value=8.7 Score=33.54 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
.++.++|.+|..|+--|..|..++..-...|..+..--.++|+++..+..++..|.+-
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~ 274 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEE 274 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHH
Confidence 3556899999999999999999997777777666666667888888888888877653
No 283
>PLN02678 seryl-tRNA synthetase
Probab=67.41 E-value=48 Score=30.67 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITT---QHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~---~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.|..++..|+.+-+.+.++|..+. +....+..+-..|++++..|..++..+.+-+..+
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554321 2233455566677777777777777766655543
No 284
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=67.33 E-value=47 Score=24.35 Aligned_cols=38 Identities=13% Similarity=0.334 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041765 80 TQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTS 117 (163)
Q Consensus 80 ~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~ 117 (163)
...+..+..+...|+.++..+...|..+...-.++..+
T Consensus 80 ~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v 117 (126)
T PF13863_consen 80 EAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKV 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666666666666666666666666653
No 285
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.32 E-value=1.6e+02 Score=30.52 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
++....+.|.-++.+|+.+-..+...+..+...+..+..++..|++.+......+
T Consensus 812 k~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~ 866 (1174)
T KOG0933|consen 812 KRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDV 866 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 3344455666666666666666666666666666666666666666555444333
No 286
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=67.27 E-value=48 Score=28.38 Aligned_cols=41 Identities=12% Similarity=0.239 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765 39 SNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNIT 79 (163)
Q Consensus 39 sNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l 79 (163)
+-|..++.-=..-+.++..|+.+-..|+.++.+|..++..+
T Consensus 208 kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 208 KSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555666777777666666665555444433
No 287
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.21 E-value=58 Score=31.66 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
+.++.|..+|+.|..+-.+.........+.-..+..|...|+.++.+|...+.....=|+..
T Consensus 8 q~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqt 69 (772)
T KOG0999|consen 8 QEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQT 69 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665554444444444444555555555555555555555444444433
No 288
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.01 E-value=1.1e+02 Score=29.94 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=2.2
Q ss_pred HHHHHH
Q 041765 60 AQVDQL 65 (163)
Q Consensus 60 ~qv~~L 65 (163)
.+...|
T Consensus 586 e~~~~l 591 (717)
T PF10168_consen 586 EERKSL 591 (717)
T ss_pred HHHHHH
Confidence 333333
No 289
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=66.97 E-value=1e+02 Score=28.11 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=43.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHH
Q 041765 32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSV--------------NITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i--------------~~l~~~~~~l~~EN~~Lraql 97 (163)
-|.|++.-|-|.-|.-|+-= ++-..+..+|+..|++|..++ +.++.-+..++.||..|..++
T Consensus 75 ~kirk~~e~~eglr~i~es~----~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 75 TKIRKITEKDEGLRKIRESV----EERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHHHHHHhccHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 35666666777776666432 222334445555555555443 445566677788999998888
Q ss_pred HHHHHHH
Q 041765 98 LELTQRL 104 (163)
Q Consensus 98 ~eL~~rl 104 (163)
.++.+..
T Consensus 151 ~~l~~e~ 157 (401)
T PF06785_consen 151 DALQQEC 157 (401)
T ss_pred HHHHHHH
Confidence 8877665
No 290
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=66.93 E-value=20 Score=32.99 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSS 118 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~ 118 (163)
++.+|+.++..++.....+.. ...-..+..+-..|..++..|.+++..|..++..+....
T Consensus 171 Rl~~L~~qi~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 230 (475)
T PF10359_consen 171 RLDELEEQIEKHEEKLGELEL-----NPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSE 230 (475)
T ss_pred HHHHHHHHHHHHHHhhhcccc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445666666665555444322 112233455666677777777777777777777776543
No 291
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=66.73 E-value=57 Score=31.07 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.++++.+...|..|......+..++.........+..+-..|+.+...+..+-+-+..++...
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f 106 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERF 106 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457888999999999999999999999999999999999999999999999988888887764
No 292
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=66.66 E-value=18 Score=24.35 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Q 041765 86 IESENSVLRAQLLELTQR-LDSLNDILNFINT 116 (163)
Q Consensus 86 l~~EN~~Lraql~eL~~r-l~~l~~il~~~~~ 116 (163)
+..+|..||.++..=+-+ -+...+++.+.+.
T Consensus 4 ~~~~ve~Lr~el~~~RikvS~a~~~li~y~e~ 35 (63)
T smart00224 4 LRKEVEQLRKELSRERIKVSKAAEELLAYCEQ 35 (63)
T ss_pred HHHHHHHHHHHHCCceehHHHHHHHHHHHHHc
Confidence 344455555555422111 1234566777765
No 293
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=66.19 E-value=65 Score=26.04 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 041765 94 RAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 94 raql~eL~~rl~~l~~il~~~~~ 116 (163)
|.+++++..+|+.|..-|..++.
T Consensus 124 r~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777777777777766554
No 294
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=66.01 E-value=73 Score=26.11 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041765 86 IESENSVLRAQLLELTQRL 104 (163)
Q Consensus 86 l~~EN~~Lraql~eL~~rl 104 (163)
|+..-..++.+-..|..|.
T Consensus 125 L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 125 LQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 295
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=65.87 E-value=59 Score=25.02 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
|+.+-..++.+-..-.-+-..++.++..|+.|+..++.-...|..|++.|+..|..
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444444555555555455555555555544443
No 296
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=65.73 E-value=40 Score=22.96 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 65 LRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 65 L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
+..|-...+..+-.+..++...+..|..|.++|..|..++..+.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555666666677777777777777777777777776543
No 297
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=65.70 E-value=65 Score=25.37 Aligned_cols=39 Identities=15% Similarity=0.351 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVL 93 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~L 93 (163)
+++|-.++..|+.--.....++..+......|..|-..|
T Consensus 8 iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL 46 (134)
T PF15233_consen 8 IEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSL 46 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443334444444444444444444444
No 298
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=65.46 E-value=59 Score=28.92 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 041765 87 ESENSVLRAQLLELTQ 102 (163)
Q Consensus 87 ~~EN~~Lraql~eL~~ 102 (163)
..+...+..++.+|+.
T Consensus 99 ~~~l~~~~~~l~~l~~ 114 (372)
T PF04375_consen 99 QQELAQLQQQLAELQQ 114 (372)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 299
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=65.35 E-value=60 Score=28.68 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNI 86 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l 86 (163)
-..+.|..||+.|+..|..++.++......++.|
T Consensus 78 ~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~egl 111 (389)
T PF06216_consen 78 NEWISLNDQVSHLQHQNSEQRQQIREMREIIEGL 111 (389)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666666666666666655555555444
No 300
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=65.29 E-value=35 Score=27.88 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
+.=.|.|+..|+.+|..|..++..+. ....+|..+-.++..|.-+|-...
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~Li----~~Ar~Ne~~~~~~~~l~l~LL~a~ 91 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEELI----ENARENEAIFQRLHRLVLALLAAR 91 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34456778888888888888886554 457788888888888877764433
No 301
>PHA03386 P10 fibrous body protein; Provisional
Probab=65.07 E-value=55 Score=24.32 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=21.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+-.++..++.++..+...+..|-++-..|..--..++.|-..++
T Consensus 17 vd~KVdaLQ~qV~dv~~n~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 17 VDTKVDALQTQLNGLEEDSQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 33444444555555555555555555544443444444444444
No 302
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=64.43 E-value=79 Score=31.17 Aligned_cols=48 Identities=29% Similarity=0.297 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
.++|+.+...|+.|-.+++.+=..+-+.|..|+.||-.|..++..|+.
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777788899999999999888877653
No 303
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=64.39 E-value=59 Score=26.98 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041765 65 LRKENNQILTSVNITTQHYMNIESENSVL 93 (163)
Q Consensus 65 L~~EN~~L~~~i~~l~~~~~~l~~EN~~L 93 (163)
|..++..|..+++.+.+.+..+++|..+|
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L 112 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKEL 112 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 304
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=64.33 E-value=76 Score=25.72 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMN-IESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~-l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
.-...+..|+.+...|+.+-..|..++..+...... ...++.....++..|+..-+.|..-|
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566667777777777777776666666666543 34455555666666665555554443
No 305
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=64.27 E-value=73 Score=25.50 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=51.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------------------------HHHHHHHHHH
Q 041765 38 QSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNI-----------------------------TTQHYMNIES 88 (163)
Q Consensus 38 lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~-----------------------------l~~~~~~l~~ 88 (163)
..=.+++|....+-++.|+++..+|...-.+...|...... ++-++.-+..
T Consensus 19 f~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re 98 (159)
T PF05384_consen 19 FEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLRE 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467888888888888888887777665555554433222 2222333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 89 ENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 89 EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+-..||.+-.+|..+|..|..++...+
T Consensus 99 ~E~qLr~rRD~LErrl~~l~~tierAE 125 (159)
T PF05384_consen 99 REKQLRERRDELERRLRNLEETIERAE 125 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777888888888888887554
No 306
>PRK11281 hypothetical protein; Provisional
Probab=63.89 E-value=1.3e+02 Score=31.10 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=50.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 31 QRKRKRMQSNRESARRSRMRKQ-----------KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLE 99 (163)
Q Consensus 31 eRk~rR~lsNReSARRSR~RKq-----------~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~e 99 (163)
+|.+.++..|+.-.+.-|.+-+ .....|+.+...++.+|..+..++........-+...-..++.++..
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~ 238 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQR 238 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444443332 33556677777777777776666655555555555566666777777
Q ss_pred HHHHHHHHHHHHHH
Q 041765 100 LTQRLDSLNDILNF 113 (163)
Q Consensus 100 L~~rl~~l~~il~~ 113 (163)
+..+++.|++.+..
T Consensus 239 ~~~~~~~lq~~in~ 252 (1113)
T PRK11281 239 LEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777765
No 307
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=63.85 E-value=76 Score=28.91 Aligned_cols=12 Identities=33% Similarity=0.343 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQL 65 (163)
Q Consensus 54 ~l~eLe~qv~~L 65 (163)
....|..++..+
T Consensus 68 ~~~~L~~ql~~~ 79 (390)
T PRK10920 68 TNDALANQLTAL 79 (390)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 308
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=63.76 E-value=62 Score=24.48 Aligned_cols=17 Identities=47% Similarity=0.683 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041765 92 VLRAQLLELTQRLDSLN 108 (163)
Q Consensus 92 ~Lraql~eL~~rl~~l~ 108 (163)
.|..++.++..|+..|+
T Consensus 102 ~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 309
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=63.67 E-value=37 Score=28.51 Aligned_cols=47 Identities=26% Similarity=0.442 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 59 IAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 59 e~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
..++..++.|-.+|+..++.-..+...| ..||+|+.++..++..|..
T Consensus 48 ~eel~~~~~eEe~LKs~~q~K~~~aanL----~~lr~Ql~emee~~~~llr 94 (211)
T COG3167 48 LEELEELEAEEEELKSTYQQKAIQAANL----EALRAQLAEMEERFDILLR 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhch----HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554433333333 3478888888877777653
No 310
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=63.65 E-value=8.4 Score=28.64 Aligned_cols=40 Identities=28% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 77 NITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 77 ~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
.........++..|..|..++.+....|..++..|..+..
T Consensus 40 a~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 40 ADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777777777776666666655555543
No 311
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=63.39 E-value=42 Score=29.41 Aligned_cols=61 Identities=13% Similarity=0.263 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.+...+.++...+.+-..+..++..++.+|.....+...|..++.....+|..-..++..+
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L 289 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGL 289 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh
Confidence 3444555555555555666666666777777777777788888877777777777766654
No 312
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=63.18 E-value=62 Score=28.10 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGIL 121 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~~~ 121 (163)
+.-.+.+.|..| +.-...+..++..+++.+..+.++...|.+++..-+..|.-...-|..+....+.|
T Consensus 156 r~~e~~~iE~~l---~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAf 223 (267)
T PF10234_consen 156 RPLELNEIEKAL---KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAF 223 (267)
T ss_pred CCcCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 344444444433 34445566777777888888888888888888887777777777777777766654
No 313
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=63.12 E-value=1.1e+02 Score=27.07 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQ 71 (163)
Q Consensus 57 eLe~qv~~L~~EN~~ 71 (163)
+|..++..+..+-..
T Consensus 31 El~~~~~~~~ekRde 45 (294)
T COG1340 31 ELRKEASELAEKRDE 45 (294)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 314
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=63.02 E-value=59 Score=23.99 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
.+.+...+.+....|..|...+....+........+..++.+..+.+..
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ 82 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRES 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666667777777777766666666777777777766655443
No 315
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=62.85 E-value=66 Score=30.77 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
++++-+.++.+++..+-..-..+...+...+.+......||..|-+++..++.++.
T Consensus 195 keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k 250 (596)
T KOG4360|consen 195 KEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIK 250 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444444433333333334444444444444444555555555544444443
No 316
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=62.84 E-value=74 Score=25.04 Aligned_cols=62 Identities=19% Similarity=0.335 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN---DILNFINT 116 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~---~il~~~~~ 116 (163)
+++....+..|...-.....+-..+...+..|..|...|..-..++..+|.... .|...++.
T Consensus 23 ~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~ 87 (157)
T PF04136_consen 23 TDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNS 87 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcC
Confidence 334444444555555555555555666666777777777777777777766544 34444543
No 317
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=62.73 E-value=40 Score=30.41 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041765 86 IESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 86 l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
+..+...++.++..++.++..|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 41 IKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444443
No 318
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=62.63 E-value=80 Score=25.50 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCC
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN-TSSGIL 121 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~-~~~~~~ 121 (163)
..++.|+..++.|......+...++.+..++.. .++-.+.+|..++..+..++..+. ..+.++
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~q------es~~~veel~eqV~el~~i~emv~~d~~~l~ 142 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKTPQ------ESRGIVEELEEQVNELKMIVEMVIKDLRELY 142 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 345666666666666655555555554444322 133357777777777777777763 334444
No 319
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=62.40 E-value=98 Score=31.00 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQ---------------ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~---------------L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
+--.+.+++|.++.=|+.|-.+ ....+.+++.++..+++|-.++.+--.+|+..+..|.+....+
T Consensus 53 ~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl 132 (829)
T KOG2189|consen 53 NEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVL 132 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3455667777776666666554 2566778888888888888888888888888888888888888
Q ss_pred hccCCCCC
Q 041765 115 NTSSGILD 122 (163)
Q Consensus 115 ~~~~~~~~ 122 (163)
.....+++
T Consensus 133 ~~t~~Ff~ 140 (829)
T KOG2189|consen 133 EKTDEFFS 140 (829)
T ss_pred Hhhhhhcc
Confidence 77776654
No 320
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=62.36 E-value=44 Score=26.07 Aligned_cols=52 Identities=23% Similarity=0.179 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
.|..++..++.........+..|+.++..-.+|-..||.++.++...-..|+
T Consensus 77 ~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 77 RLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555555555666666667777777777777766655554
No 321
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=62.13 E-value=1.2e+02 Score=28.58 Aligned_cols=57 Identities=12% Similarity=0.241 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
..+++.++..+..+-..+......+...+..+..+-...+.++..++..+..+...+
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l 434 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL 434 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444555555555555555555544444333
No 322
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=61.98 E-value=34 Score=25.39 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 56 DDLIAQVDQLRKENNQILTSV-NITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i-~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
..++..+..+..|-..|...+ ......+.....+...+..+...|..+|.....+|..++
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq 71 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQ 71 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444 334444444444555555555555555555555554443
No 323
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=61.96 E-value=44 Score=30.16 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 87 ESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 87 ~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
+.++..|..+...++.++..+.+-+..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (398)
T PTZ00454 35 DIQEEYIKEEQKNLKRELIRAKEEVKR 61 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333333333
No 324
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=61.94 E-value=1.3e+02 Score=27.66 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=24.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+..-.....+++..+..+...|..++.+|..++..|..-|..+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444555555555555666666666666666655555543
No 325
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.71 E-value=79 Score=30.42 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVL----RAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~L----raql~eL~~rl~~l~~il 111 (163)
+.|++.+..-+..+...+..+..++..+...|..+..++..+ +.++..|...|..++..+
T Consensus 445 q~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~ 508 (581)
T KOG0995|consen 445 QEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVL 508 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666667777777777666666665555444 455556666666555444
No 326
>COG5570 Uncharacterized small protein [Function unknown]
Probab=61.70 E-value=21 Score=24.06 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
.|+.+|+.+-..|+.|.++-...-..--..+..|..-.-+|+.+++.|+.
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777777777777666553332211122233444444455555555543
No 327
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=61.64 E-value=36 Score=24.76 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
+|..+-.||..|+.++..++.-+ ...|-..|-+++..|+..
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 45556678888888888777766 667788888888888765
No 328
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=61.56 E-value=80 Score=25.54 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
+..=..|-..+.+++..|.+++..+..+..
T Consensus 120 ll~hr~e~ee~~~~l~~le~~~~~~e~~~~ 149 (175)
T PRK13182 120 LLQHRREMEEMLERLQKLEARLKKLEPIYI 149 (175)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344468888999999999999999775543
No 329
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=61.41 E-value=2e+02 Score=29.66 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=22.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
.|..+...++..+.....+-..+..++.++...|..-..|+..
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~ 522 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQ 522 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555444
No 330
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=61.21 E-value=1.2e+02 Score=27.24 Aligned_cols=22 Identities=9% Similarity=0.302 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVN 77 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~ 77 (163)
++|+.+..+|+..+.....+++
T Consensus 7 ~eL~~efq~Lqethr~Y~qKle 28 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLE 28 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333
No 331
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=60.96 E-value=20 Score=23.34 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 91 SVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 91 ~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
..||+|+..|+.+|+.|...+....
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888887776554
No 332
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=60.82 E-value=1.4e+02 Score=27.77 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 62 VDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 62 v~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
+..+.+.-+.|..++..+.+++..++++...|-++-.+|+
T Consensus 139 lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555566655555555555555
No 333
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.74 E-value=93 Score=29.49 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=15.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
+..++..|+.+.........++|.++.+|..|+..+--
T Consensus 360 i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~i 397 (508)
T KOG3091|consen 360 IGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMI 397 (508)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444433333
No 334
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=60.70 E-value=62 Score=23.47 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 041765 57 DLIAQVDQL 65 (163)
Q Consensus 57 eLe~qv~~L 65 (163)
+|...+..|
T Consensus 46 ~l~~~~~~l 54 (99)
T PF10046_consen 46 GLEKNLEDL 54 (99)
T ss_pred HHHHHHHHH
Confidence 333333333
No 335
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=60.69 E-value=1e+02 Score=25.86 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 48 RMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNI---ESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 48 R~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l---~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
=.+-++|-++|+.--..|..-|.....+++...++.... ...-..++.|+..|...|.+||.|-..
T Consensus 129 ~~~~~~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ~~kLa~NL~sLN~VYg~ 197 (202)
T TIGR03513 129 YAQQKKYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEEMEKMAANLTSLNEVYGG 197 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557888888888888888888888888777766543 345567899999999999999987543
No 336
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=60.39 E-value=82 Score=24.78 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
..+|..+...+..+-.+-......+..+...+..+...=..|...+..|-.+-..|..+.+.+.
T Consensus 6 ~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~ 69 (157)
T PF04136_consen 6 LDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEIS 69 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666777777777777777777788888877777777777777666666665555544
No 337
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=60.24 E-value=87 Score=25.04 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=9.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 041765 39 SNRESARRSRMRKQKHLDDLI 59 (163)
Q Consensus 39 sNReSARRSR~RKq~~l~eLe 59 (163)
..-+.|...=.+|+..++.|.
T Consensus 135 ~~~~~a~~~l~kkk~~~~kl~ 155 (236)
T PF09325_consen 135 IEYQNAEKELQKKKAQLEKLK 155 (236)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 333444444444444444443
No 338
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=60.15 E-value=1.4e+02 Score=28.78 Aligned_cols=72 Identities=21% Similarity=0.168 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 41 RESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNI--------TTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 41 ReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~--------l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
++++++...=-..++.+|..++...+.+-...+.+... ..+++..+..+-...+++....+.++..+...+.
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444455556666555555555554444322 2255566666666666666666667766666664
No 339
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=60.14 E-value=97 Score=26.91 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 62 VDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 62 v~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
+..+..+.+.+...+..+...-..|++.-..-+.++...+.||+.|.
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444
No 340
>PRK14160 heat shock protein GrpE; Provisional
Probab=59.93 E-value=84 Score=26.31 Aligned_cols=45 Identities=13% Similarity=0.295 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~ 98 (163)
.+..|+.++..|+.++..|..++..++.++..+.++..-.|.+..
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666555554443
No 341
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=59.92 E-value=72 Score=30.73 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITT 80 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~ 80 (163)
+..|..++..|+.++..|..++..|.
T Consensus 505 ~~~L~~~~~~Le~e~~~L~~~~~~Le 530 (722)
T PF05557_consen 505 LNELQKEIEELERENERLRQELEELE 530 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555544444
No 342
>PRK10698 phage shock protein PspA; Provisional
Probab=59.67 E-value=1e+02 Score=25.61 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 62 VDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 62 v~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
+..|+.+-......+..|...+..|+..-..++.+-..|..|.+..
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444433
No 343
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=59.61 E-value=1.8e+02 Score=28.58 Aligned_cols=61 Identities=7% Similarity=0.121 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
+....++.+|+...++|..+|..+..+.+++..+.-.-+.++..|...+.+-+..+.-+-.
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455677788888888888888888888877777766667777777777666666655533
No 344
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=59.53 E-value=93 Score=25.85 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041765 88 SENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 88 ~EN~~Lraql~eL~~rl~~l~ 108 (163)
.+-+.|+.++...+.||.++.
T Consensus 123 e~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 123 EEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 345
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.46 E-value=1.1e+02 Score=29.48 Aligned_cols=50 Identities=20% Similarity=0.414 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNI---TTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~---l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
-+.+++.|+.+|..|+..|.. ....+.....|+..|...+..+.-.+..|
T Consensus 306 kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444422 12333444445555544444444433333
No 346
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=59.34 E-value=29 Score=30.24 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVN 77 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~ 77 (163)
.+.|+.++..|+.+|..|+.+++
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~ 56 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELD 56 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Confidence 34455555555555555444443
No 347
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=59.17 E-value=80 Score=24.24 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 84 MNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 84 ~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
......-..++.+..+|..|+-.+-..++.+.
T Consensus 68 ~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr 99 (141)
T PF13874_consen 68 LETSARLEEARRRHQELSHRLLRVLRKQEILR 99 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666677777766666666554
No 348
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=59.14 E-value=1.3e+02 Score=27.42 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 041765 28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSV-------LRAQLLEL 100 (163)
Q Consensus 28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~-------Lraql~eL 100 (163)
+.++|-++=|.+| |+---+| ..|--+|..|+.+-.++-.+++.-..+|..+..|-.. |-.+..+|
T Consensus 123 EveekykkaMvsn---aQLDNEK-----snl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~el 194 (405)
T KOG2010|consen 123 EVEEKYKKAMVSN---AQLDNEK-----NNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEEL 194 (405)
T ss_pred HHHHHHHHHHHHH---Hhhcccc-----cceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888887 1111111 1233445555554444444444444444444444444 44444444
Q ss_pred HHHHHHHHHHHH
Q 041765 101 TQRLDSLNDILN 112 (163)
Q Consensus 101 ~~rl~~l~~il~ 112 (163)
...|.+-.++|.
T Consensus 195 Ke~l~QRdelie 206 (405)
T KOG2010|consen 195 KEGLRQRDELIE 206 (405)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 349
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=59.00 E-value=93 Score=30.03 Aligned_cols=14 Identities=14% Similarity=0.423 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLR 66 (163)
Q Consensus 53 ~~l~eLe~qv~~L~ 66 (163)
.++.+|+.++..|+
T Consensus 50 ~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 50 SRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555554
No 350
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=58.78 E-value=93 Score=25.68 Aligned_cols=15 Identities=40% Similarity=0.528 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 041765 94 RAQLLELTQRLDSLN 108 (163)
Q Consensus 94 raql~eL~~rl~~l~ 108 (163)
..++.+.+.++..++
T Consensus 119 q~~l~~~~~~l~ei~ 133 (240)
T PF12795_consen 119 QQQLSEARQRLQEIR 133 (240)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 351
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=58.74 E-value=1.2e+02 Score=27.34 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNI 86 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l 86 (163)
+..-+.+|.++..|+.+|.-+..+-..+..+|...
T Consensus 32 ~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrec 66 (328)
T PF15369_consen 32 KAEQESFEKKIRQLEEQNELIIKEREDLQQQYREC 66 (328)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34456677778888888877777777777666544
No 352
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=58.66 E-value=49 Score=24.79 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=19.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 71 QILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
.+...+.....++..|.++|..|++++..|++-
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444455555556666666666666666666
No 353
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=58.60 E-value=93 Score=30.91 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILT---------------------SVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~---------------------~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
.+|.++..++..+..||..|.. .+..+..++..++.||..|+-++.-|...|.-.+.
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~ 169 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNE 169 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888887665 34567788888888999998888888777765553
No 354
>PRK11281 hypothetical protein; Provisional
Probab=58.27 E-value=2.1e+02 Score=29.72 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 041765 62 VDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGI 120 (163)
Q Consensus 62 v~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~~ 120 (163)
+..+-..|.+|..++...+++...+..+|...+.++..+++....+++.++.+..+..+
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l 338 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLL 338 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 34455679999999999999999999999999999999999999999999887765543
No 355
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=58.04 E-value=1.1e+02 Score=25.39 Aligned_cols=63 Identities=11% Similarity=0.204 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
.+=-...+.++.++..|+........+...+...+..|+.++..|...+.....+...+..-|
T Consensus 165 ~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 165 EKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566666666666666666666666666666666666666666666666666655555
No 356
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=57.88 E-value=52 Score=29.23 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041765 86 IESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 86 l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
+..+...++.++.++..++..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 27 LEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444333
No 357
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=57.79 E-value=48 Score=28.51 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRA 95 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lra 95 (163)
.+.+|.++-++|+.++.+|..++.. ....++.||..||+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4445556666666666655444322 22235555555554
No 358
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=57.68 E-value=71 Score=23.19 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNI---TTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~---l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
..++.||.++.+.+..-..+-.++.. ..+.-..++.|-..|+.++.....+|+.|..
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 35666777666666555554444322 2345566777777777777777777776654
No 359
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=57.58 E-value=79 Score=30.34 Aligned_cols=47 Identities=28% Similarity=0.389 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~ 98 (163)
+..+++|..++..++.+...+...+..+.+.......++..|.+++.
T Consensus 334 ~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 334 QEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666666666666666666666665555544
No 360
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=57.55 E-value=16 Score=33.06 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYM 84 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~ 84 (163)
.-.|..+-..|++||..|+.++..|+....
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 446667777777777777777777755443
No 361
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=57.48 E-value=1.2e+02 Score=29.11 Aligned_cols=29 Identities=21% Similarity=0.199 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYM 84 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~ 84 (163)
.++..++..|+.+-.++..++..|++.+.
T Consensus 381 ~~~~~~l~~le~~l~~~~~~~~~L~~~~~ 409 (656)
T PRK06975 381 HQLDSQFAQLDGKLADAQSAQQALEQQYQ 409 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 362
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=57.46 E-value=71 Score=25.24 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQ 96 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraq 96 (163)
+.|..+++.|.+.-..|...+..+.+.+..+..++..+-.+
T Consensus 97 e~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 97 EFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555555555555554443
No 363
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=57.27 E-value=72 Score=23.12 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041765 63 DQLRKENNQILTSVNITTQHYMNIES 88 (163)
Q Consensus 63 ~~L~~EN~~L~~~i~~l~~~~~~l~~ 88 (163)
.-|+..|.....++..+......+..
T Consensus 24 ~LLe~mN~~~~~kY~~~~~~~~~l~~ 49 (99)
T PF10046_consen 24 NLLENMNKATSLKYKKMKDIAAGLEK 49 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333333333
No 364
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=57.02 E-value=83 Score=23.78 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041765 86 IESENSVLRAQLLELTQRL 104 (163)
Q Consensus 86 l~~EN~~Lraql~eL~~rl 104 (163)
+..+...++.++..|+..+
T Consensus 64 lr~e~~~~~~~~~~l~~~~ 82 (132)
T PF07926_consen 64 LREELQELQQEINELKAEA 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 365
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=56.97 E-value=64 Score=22.49 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 66 RKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 66 ~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
+..-..|........++...|...+..|-.++..|...+.-
T Consensus 27 q~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 27 QSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444455555555555544443
No 366
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=56.87 E-value=90 Score=24.13 Aligned_cols=31 Identities=3% Similarity=0.146 Sum_probs=11.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
|..+|+.+..+......-....+.++.+++.
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVRE 96 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333333333333
No 367
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=56.83 E-value=1.1e+02 Score=29.21 Aligned_cols=63 Identities=8% Similarity=0.263 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 44 ARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 44 ARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
++...--+++.+++++.+|+.|+..+-.=-..+....+++..|..|-...++++..+.+.|+.
T Consensus 182 ~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~ 244 (555)
T TIGR03545 182 KRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQN 244 (555)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333345566777777777765421111223333344444444444444444444444433
No 368
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=56.75 E-value=70 Score=22.86 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 70 NQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 70 ~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
..|..++..|...+..-..|...|..-+..|+.+|..+..+-..++
T Consensus 1 n~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq 46 (76)
T PF11544_consen 1 NELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQ 46 (76)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 369
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=56.47 E-value=45 Score=28.79 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=5.2
Q ss_pred CcCCCcCcc
Q 041765 148 FLNQPIMAS 156 (163)
Q Consensus 148 ~~~qpi~a~ 156 (163)
..++|+++.
T Consensus 145 ~~~~~Vi~~ 153 (284)
T COG1792 145 KKGMPVVAE 153 (284)
T ss_pred cCCCeEEEC
Confidence 346676654
No 370
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.30 E-value=36 Score=24.45 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
...+..+...|+.+...|...-..|..
T Consensus 70 ~~~l~~~i~~l~~ke~~l~~en~~L~~ 96 (100)
T PF01486_consen 70 DQLLMEQIEELKKKERELEEENNQLRQ 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666555555444443
No 371
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=56.23 E-value=27 Score=25.44 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=23.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
+...+..|...+..+..+|..|..++.++++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555667777788888888888888887754
No 372
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=56.07 E-value=49 Score=30.64 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=34.2
Q ss_pred HHHHHHHhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 33 KRKRMQSNRESARRSRMRKQ------------KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 33 k~rR~lsNReSARRSR~RKq------------~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
-..|+..-|.+=..+|.+.. ..+..|+.++..++.+-..|...+..-.-++..+..+-..|++|+.++
T Consensus 254 Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~e 333 (434)
T PRK15178 254 AQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQ 333 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 34455555555556665543 344445555555444444443322111223444555555555555555
Q ss_pred HHHH
Q 041765 101 TQRL 104 (163)
Q Consensus 101 ~~rl 104 (163)
+.++
T Consensus 334 r~kl 337 (434)
T PRK15178 334 RNRL 337 (434)
T ss_pred HHHh
Confidence 5554
No 373
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=55.95 E-value=88 Score=24.71 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYM-NIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~-~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
+-++.|+.++..|+.+...+...+......-. .-.+|-..-|.+...+..|+..|...|...
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTG 73 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566777777777665556555543322210 001122233445555556666666666544
No 374
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=55.88 E-value=72 Score=23.24 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLE 99 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~e 99 (163)
.+..+..+...|.+||++|..+....+.+ .+|...|.+.++
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~q-----vkn~~vrqknee 64 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQ-----VKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHH
No 375
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=55.86 E-value=48 Score=25.85 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRA 95 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lra 95 (163)
..+...+.-+..|+.+...=-.+|..|.+++..+...|..|..
T Consensus 87 sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 87 SLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555566666655556666666666666666666544
No 376
>PRK10722 hypothetical protein; Provisional
Probab=55.72 E-value=55 Score=28.26 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041765 63 DQLRKENNQILTSVNITTQHYMNI----ESENSVLRAQLLELTQRLDSLNDILNFINTS 117 (163)
Q Consensus 63 ~~L~~EN~~L~~~i~~l~~~~~~l----~~EN~~Lraql~eL~~rl~~l~~il~~~~~~ 117 (163)
-+|-.+.+.+.-.+..-..+|..| +++...|++|..+|+.+|...++=|+.+...
T Consensus 147 ~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdI 205 (247)
T PRK10722 147 YQLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDI 205 (247)
T ss_pred HHHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777777888888 8999999999999999999999988888754
No 377
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=55.62 E-value=1.2e+02 Score=25.23 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 041765 79 TTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSS 118 (163)
Q Consensus 79 l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~ 118 (163)
...+-.....|-..|..+-.+.+.+|..|...|..++...
T Consensus 145 va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 145 VAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455567777888888888899999999998887643
No 378
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=55.55 E-value=76 Score=30.28 Aligned_cols=57 Identities=16% Similarity=0.302 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSV----LRAQLLELTQRLDSLN 108 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~----Lraql~eL~~rl~~l~ 108 (163)
+++++.++.-++.|+.++..+..++..+...|.....+|.. -+.++..|..+|+.|+
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln 546 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN 546 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778888888889999998888888888888776655554 4678888888888776
No 379
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=55.49 E-value=93 Score=29.05 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=37.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 39 SNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNI----------TTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 39 sNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~----------l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
++|+=|.-|-+-+-..+-+++.+|.+++.+-..|..-++. +++++..+..+...|.+|...|+....
T Consensus 399 kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq~ 475 (486)
T KOG2185|consen 399 KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSNEQV 475 (486)
T ss_pred hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 5666666655545556667777777777776666655432 344444444444444444444444433
No 380
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=55.40 E-value=40 Score=22.21 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcc
Q 041765 87 ESENSVLRAQLLELTQR-LDSLNDILNFINTS 117 (163)
Q Consensus 87 ~~EN~~Lraql~eL~~r-l~~l~~il~~~~~~ 117 (163)
..++..||.++..=+-+ -+...+++.+.+..
T Consensus 5 ~~~veqLr~el~~~RikvS~a~~~l~~y~e~~ 36 (57)
T cd00068 5 KKEVEQLRKELSRERLKVSKAAAELLKYCEQN 36 (57)
T ss_pred HHHHHHHHHHHCCchhhHHHHHHHHHHHHHhc
Confidence 34444555555422111 12345666666653
No 381
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=55.22 E-value=82 Score=23.18 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSV------LRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~------Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+-++..-+++.++..++.++-.+......+...+..+..+... ++.++..+...++.-......+.
T Consensus 7 ~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k 78 (106)
T PF05837_consen 7 NLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMK 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777888888888888777777777777666543 34455566666655555554443
No 382
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=55.04 E-value=2.7e+02 Score=29.48 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQIL--------TSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~--------~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
.+.+...+|+..+..++.+-..|. .++....++....+++...|.+++..+..++..+..
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~ 529 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK 529 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555544444444 334444444444444444444444444444444433
No 383
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=55.01 E-value=26 Score=29.04 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=37.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 68 ENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 68 EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
.+.+|......|..++..|..+|..|..++.+|...+..+...+..
T Consensus 106 K~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 106 KTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred cchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 3445777778888889999999999999999999888888777766
No 384
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=54.90 E-value=2e+02 Score=27.56 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 76 VNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
+..++..+..++.|+..|+.+...|...|..+.
T Consensus 157 ~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 157 INTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 333344444444444444444444444444444
No 385
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=54.70 E-value=1.5e+02 Score=26.19 Aligned_cols=58 Identities=16% Similarity=0.262 Sum_probs=27.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041765 36 RMQSNRESARRSRMRKQKHLDDLIAQVDQ-------LRKENNQILTSVNITTQHYMNIESENSVL 93 (163)
Q Consensus 36 R~lsNReSARRSR~RKq~~l~eLe~qv~~-------L~~EN~~L~~~i~~l~~~~~~l~~EN~~L 93 (163)
-+..+-+--.+-|.-||=+|+.||+-+.. -+.+-..|..++..|.+.+..++.-+..|
T Consensus 22 elE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKl 86 (307)
T PF10481_consen 22 ELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKL 86 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHh
Confidence 33444444444455556666666543322 22233335555555555555555444444
No 386
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=54.65 E-value=1.2e+02 Score=24.86 Aligned_cols=47 Identities=4% Similarity=0.056 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
.+..|+.++..++..-..|..++..++.++..+.+.-..|.++....
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A 146 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAA 146 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555444444333
No 387
>PRK10963 hypothetical protein; Provisional
Probab=54.58 E-value=54 Score=27.03 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD---SLNDILNFIN 115 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~---~l~~il~~~~ 115 (163)
.|.|+..|+.+|..|..++..+. ....+|..+-.++..|.-+|- ++.+++..+.
T Consensus 42 ~ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~ 98 (223)
T PRK10963 42 VEWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSRLAAADSLQDMLMRLH 98 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 34567777777777777765443 456778888888877776653 2334444443
No 388
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=54.52 E-value=61 Score=21.46 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041765 91 SVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 91 ~~Lraql~eL~~rl~~l~~il 111 (163)
..++..+..|..+...|...+
T Consensus 76 ~~i~~~~~~l~~~w~~l~~~~ 96 (105)
T PF00435_consen 76 DEIQEKLEELNQRWEALCELV 96 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444
No 389
>PLN02678 seryl-tRNA synthetase
Probab=54.26 E-value=1.1e+02 Score=28.26 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIE---SENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~---~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
..+-.|..+...+..+-..|+.+.+.+..++..+. .+-..|.+++.+|.+++..++..+..++.
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~ 99 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKA 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666664422 12345666667777777777766666543
No 390
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.20 E-value=1.1e+02 Score=24.31 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041765 88 SENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 88 ~EN~~Lraql~eL~~rl~~l~ 108 (163)
.++..+..++.+|..+|...+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~ 174 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKE 174 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 391
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.06 E-value=91 Score=23.34 Aligned_cols=10 Identities=50% Similarity=0.760 Sum_probs=6.9
Q ss_pred HHHhHHHHHH
Q 041765 37 MQSNRESARR 46 (163)
Q Consensus 37 ~lsNReSARR 46 (163)
|-.||.+++-
T Consensus 55 msQNRq~~~d 64 (108)
T PF06210_consen 55 MSQNRQAARD 64 (108)
T ss_pred HHhhHhHHHH
Confidence 5578877764
No 392
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=54.03 E-value=73 Score=22.22 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIES 88 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~ 88 (163)
++.+..++..|..--..|...+..+...+..+..
T Consensus 16 l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666665555555555555555444433
No 393
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=53.94 E-value=1.1e+02 Score=27.27 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
+++.+|..+...|...-..-...|..|.+.++..+.|...|.+.++.|.-++..+..-++.+-.
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa 72 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAA 72 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 4556666666666655555555677788888889999999999999999999888888877754
No 394
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=53.91 E-value=1e+02 Score=23.82 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=13.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 37 MQSNRESARRSRMRKQKHLDDLIAQVDQLRKEN 69 (163)
Q Consensus 37 ~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN 69 (163)
++-|.|.||--+.+..+ +.++.++..+..-.
T Consensus 38 ~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~ 68 (126)
T PF09403_consen 38 QLEQKEEARYNEEKQEA--EAAEAELAELKELY 68 (126)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 34445555544443333 34444444443333
No 395
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=53.82 E-value=1.3e+02 Score=25.00 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=53.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 32 RKRKRMQSNRESARRSRMRKQKHLDDLIA--------------QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~--------------qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
|+.-++..+-..|-.+|-||- +.+|+. =+.-|+.|-..|...+..-+.+...++.|+..+-.++
T Consensus 94 k~~q~Rm~~qL~~aE~rhrr~--i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l 171 (192)
T PF09727_consen 94 KKMQRRMLEQLAAAEKRHRRT--IQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQL 171 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555556665543 333332 2445788888899999888888999999999998888
Q ss_pred HHHHHHHHHHHHHH
Q 041765 98 LELTQRLDSLNDIL 111 (163)
Q Consensus 98 ~eL~~rl~~l~~il 111 (163)
.+=..+++++.-+|
T Consensus 172 ~eE~~k~K~~~l~L 185 (192)
T PF09727_consen 172 EEERTKLKSFVLML 185 (192)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777777665444
No 396
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.82 E-value=1e+02 Score=23.87 Aligned_cols=74 Identities=20% Similarity=0.325 Sum_probs=35.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 041765 36 RMQSNRESARRSRMRKQKHLDDLIA-------QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ-RLDSL 107 (163)
Q Consensus 36 R~lsNReSARRSR~RKq~~l~eLe~-------qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~-rl~~l 107 (163)
++...-+.+...-.+|++.++.|.. +|..|+.+-..+...+..+...+..+ +..++.++..+.. +...+
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~~~~~~dl 190 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFHEERARDL 190 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4444455566656666655555542 44555555555555544444433333 4445555555543 33344
Q ss_pred HHHHH
Q 041765 108 NDILN 112 (163)
Q Consensus 108 ~~il~ 112 (163)
..++.
T Consensus 191 k~~l~ 195 (218)
T cd07596 191 KAALK 195 (218)
T ss_pred HHHHH
Confidence 44443
No 397
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=53.70 E-value=78 Score=30.32 Aligned_cols=63 Identities=24% Similarity=0.281 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
.++++...+|+.+...-......+..+...+..++.+|+-|..+..-.+.-+..|+.+|..+.
T Consensus 37 ~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~ 99 (701)
T PF09763_consen 37 EYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLS 99 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcC
Confidence 455556666666666666666677777778888888888888777777777777777776654
No 398
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=53.68 E-value=4.3 Score=38.96 Aligned_cols=54 Identities=26% Similarity=0.398 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMN---IESENSVLRAQLLELTQ 102 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~---l~~EN~~Lraql~eL~~ 102 (163)
++|-+-+++|..+|..|+..|..|..++..+.+++.. +..+...++.++.+|..
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~ 377 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQ 377 (713)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888888777776666555433 33333333444444433
No 399
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=53.47 E-value=87 Score=26.20 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNIT-----------------------TQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l-----------------------~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
.|++...+-|..++..|+.+...|+..+..+ ......+..+-..|++++..++.+..
T Consensus 76 qr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e 155 (202)
T PF06818_consen 76 QRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRRE 155 (202)
T ss_pred HHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHH
Q ss_pred HHHHHHH
Q 041765 106 SLNDILN 112 (163)
Q Consensus 106 ~l~~il~ 112 (163)
....-+.
T Consensus 156 ~q~~~Fe 162 (202)
T PF06818_consen 156 EQRSSFE 162 (202)
T ss_pred HHHHHHH
No 400
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=53.19 E-value=2e+02 Score=27.04 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITT 80 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~ 80 (163)
.++.++..++.++..+..++..+.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~ 87 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVT 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333
No 401
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=53.19 E-value=1.6e+02 Score=30.28 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
......+...++.++.+++.++..|...|
T Consensus 506 ~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 506 RDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444455555555555554443
No 402
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=53.07 E-value=1.6e+02 Score=26.55 Aligned_cols=36 Identities=11% Similarity=0.293 Sum_probs=22.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 81 QHYMNIESENS-VLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 81 ~~~~~l~~EN~-~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
.++..+..+.. .+..++.+++.++..+..-+..+..
T Consensus 276 ~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 276 SKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333 6777777888888888877766654
No 403
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=53.03 E-value=1.6e+02 Score=25.79 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
-+.+.+.|..+...++.|+.........|..-|..|..+|..|+.+...+.
T Consensus 48 ~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~ 98 (309)
T PF09728_consen 48 LQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRA 98 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888889888888888888899999999999987665444
No 404
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=52.92 E-value=32 Score=32.18 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
+.|.++|+.|..+|..|+.++..+.-++..+..||.-|+.--.+++.|..+-++.+.
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfis 102 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFIS 102 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHH
Confidence 456667777777777777777777777777888888777777777777665444444
No 405
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=52.88 E-value=7.5 Score=28.69 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 80 TQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 80 ~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
...+..|..+|..|+.++.+|..++..+..
T Consensus 31 ~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~ 60 (131)
T PF05103_consen 31 AEELERLQRENAELKEEIEELQAQLEELRE 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 344444555555555555555555444443
No 406
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.74 E-value=1.7e+02 Score=26.22 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
++..|-.+-.....++..++++|..+..-...+..++.++..+|..+..-+
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444555555555555555555555555555554444444
No 407
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=52.49 E-value=1.9e+02 Score=26.60 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 62 VDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 62 v~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
+..+..-...+..++..+..+...++.+-..|+.++.+|+++|..+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345566666667777777777778888888888888888888877754
No 408
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=52.41 E-value=1.6e+02 Score=25.69 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=36.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041765 31 QRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHY 83 (163)
Q Consensus 31 eRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~ 83 (163)
-|.+|+++.+....=+.+.-.-..|..|+.++..++.++.....++..++.+.
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~ 195 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQK 195 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Confidence 45566677777754433333345788999999999988888777777776653
No 409
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.22 E-value=52 Score=32.35 Aligned_cols=67 Identities=15% Similarity=0.265 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 46 RSRMRKQKHLDDLIAQVDQLRKENNQILT---SVNITTQHYMNIES---ENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 46 RSR~RKq~~l~eLe~qv~~L~~EN~~L~~---~i~~l~~~~~~l~~---EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
++|..|+..++.|++++..|+.-+..|.. .+.....-...+-. |-..|+.++.....+.+.|..|+.
T Consensus 552 ~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF~ 624 (716)
T KOG4593|consen 552 KARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEVFA 624 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888776665432 12222222333333 666677777766666666665543
No 410
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.21 E-value=92 Score=26.87 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIE----SENSVLRAQLLELT 101 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~----~EN~~Lraql~eL~ 101 (163)
|..+.+ +|..++..+++.-.+|..++..++.....+. ..+..|..++..|+
T Consensus 48 ~~~r~~-~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~ 102 (247)
T COG3879 48 RRARDL-DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLR 102 (247)
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
No 411
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.05 E-value=1.2e+02 Score=25.74 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
.-+|..++.+..-+...+.+..++..++..++.+.+.. |..+|+++....
T Consensus 159 ~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 159 DQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44555555555555555555556666666666554444 555776666544
No 412
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=52.00 E-value=17 Score=23.74 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQI 72 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L 72 (163)
-++.+||.+|..|++-|..|
T Consensus 18 vrv~eLEeEV~~LrKINrdL 37 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDL 37 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHH
Confidence 45678888888888888776
No 413
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.88 E-value=2.3e+02 Score=27.81 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041765 60 AQVDQLRKENNQILTSVNITTQHYMNI 86 (163)
Q Consensus 60 ~qv~~L~~EN~~L~~~i~~l~~~~~~l 86 (163)
.++..|+.+-.+...++..+.+....+
T Consensus 565 ~rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 565 RRVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 414
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=51.83 E-value=86 Score=23.61 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 83 YMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+..+..+-..|.+++..|...+..+...+..++
T Consensus 15 ~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 15 LQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 415
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=51.69 E-value=73 Score=28.32 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 87 ESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 87 ~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
...+..|..++..+...+..+.+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (389)
T PRK03992 21 ELKLRDLEAENEKLERELERLKSEL 45 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 416
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=51.56 E-value=1.3e+02 Score=24.33 Aligned_cols=51 Identities=8% Similarity=0.211 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 041765 62 VDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR-LDSLNDILN 112 (163)
Q Consensus 62 v~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r-l~~l~~il~ 112 (163)
+.....+-..|..++..+...|..+..+-.-++.+...-..- +..|.+.+.
T Consensus 74 ~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~ 125 (157)
T COG3352 74 LQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVN 125 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHH
Confidence 334444445555556666666666666666666666433222 444444433
No 417
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=51.50 E-value=1.1e+02 Score=23.32 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=26.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041765 34 RKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIES 88 (163)
Q Consensus 34 ~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~ 88 (163)
..-+..-.|...-|+..=.+.-++|+..+..|+.+|.....++..|+.++..+..
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555554444444445555555555555555554444444444433
No 418
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.38 E-value=99 Score=31.81 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQH 82 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~ 82 (163)
++|...+.+|....+.|..+-..+...|..++++
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444
No 419
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=51.34 E-value=1.4e+02 Score=24.54 Aligned_cols=67 Identities=27% Similarity=0.331 Sum_probs=35.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 43 SARRSRMRK-QKHLDDLIAQVDQLRKENNQILTSV--------------NITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 43 SARRSR~RK-q~~l~eLe~qv~~L~~EN~~L~~~i--------------~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
|||.-+.+. +..+.+|..++..|..||..|..-. +.+-+-+.....|-.+|+.++...+.+...+
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~ 87 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQEREL 87 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665433 4566777777777777777654321 1122233444455555555555555444444
Q ss_pred HH
Q 041765 108 ND 109 (163)
Q Consensus 108 ~~ 109 (163)
..
T Consensus 88 ~~ 89 (194)
T PF15619_consen 88 ER 89 (194)
T ss_pred HH
Confidence 43
No 420
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=51.32 E-value=1.3e+02 Score=24.45 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
|..++..+.++...+..+|..|+.+.......+..|-.|++....
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark 153 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARR 153 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777788888888888888888888888888888888877654
No 421
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=51.01 E-value=1.4e+02 Score=24.48 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=0.0
Q ss_pred CCchhhh------hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041765 20 ASEEDFQ------LAMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQH 82 (163)
Q Consensus 20 gs~~d~~------~~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~ 82 (163)
||||... ...-.+.++-+..-++..+.-=.+|++++.+-..+...++.+..+|..++...+++
T Consensus 107 GSDE~~~~C~N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 107 GSDESGGKCPNTCAELGKEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 422
>COG4420 Predicted membrane protein [Function unknown]
Probab=50.93 E-value=1.3e+02 Score=25.05 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 68 ENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 68 EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+-..|..++..+....-.+..++..||+.+.++...+...........
T Consensus 135 e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~~~~~~~~~a~r 182 (191)
T COG4420 135 EVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPELADEEALRRAVR 182 (191)
T ss_pred HHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCcccccHHHHHHHHh
Confidence 334455555554444445555666666666666666655555544443
No 423
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=50.91 E-value=1.7e+02 Score=28.35 Aligned_cols=9 Identities=22% Similarity=0.545 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 041765 55 LDDLIAQVD 63 (163)
Q Consensus 55 l~eLe~qv~ 63 (163)
+.+|+.++.
T Consensus 276 L~~l~~~L~ 284 (726)
T PRK09841 276 LPEVRSELD 284 (726)
T ss_pred HHHHHHHHH
Confidence 333333333
No 424
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.62 E-value=2e+02 Score=29.88 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 47 SRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 47 SR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~ 98 (163)
.+...+..+++++.+....-.+...|...++.+.-+.+.+.+++..|+.+..
T Consensus 412 ~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~d 463 (1200)
T KOG0964|consen 412 QENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELD 463 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333433444333333333333333333333
No 425
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=50.53 E-value=84 Score=24.17 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 85 NIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 85 ~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
.++.|-..||.++.+|..++..|+
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le 87 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALE 87 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666655555443
No 426
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=50.52 E-value=1.2e+02 Score=23.76 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 80 TQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 80 ~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
.++...+..++..++.++......+..+.+-+..
T Consensus 83 keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~ 116 (177)
T PF13870_consen 83 KEKLHFLSEELERLKQELKDREEELAKLREELYR 116 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666665555555555544443
No 427
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=50.48 E-value=1.4e+02 Score=25.90 Aligned_cols=18 Identities=6% Similarity=0.231 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041765 76 VNITTQHYMNIESENSVL 93 (163)
Q Consensus 76 i~~l~~~~~~l~~EN~~L 93 (163)
+..++.++..++.+...|
T Consensus 216 i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 428
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=50.48 E-value=1.4e+02 Score=24.55 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 041765 79 TTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGI 120 (163)
Q Consensus 79 l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~~ 120 (163)
...++..|..++..|+.++..-+.+|.+|.+|=..+.+-+..
T Consensus 128 sD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSSRK~~ 169 (179)
T PF13942_consen 128 SDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSSRKQA 169 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhccCCC
Confidence 345667788889999999999999999999999999877664
No 429
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=50.40 E-value=1.5e+02 Score=24.91 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
.|+.+......+...|..++..+...+..|..+...-..+...|+.+|.....-
T Consensus 65 rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 65 RLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555566666777776666666666666666666666666555543
No 430
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=50.37 E-value=1.1e+02 Score=23.42 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 85 NIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 85 ~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
.++.-|..|..+|.-|...|+....
T Consensus 43 ~~e~l~~dL~rrIkMLE~aLkqER~ 67 (134)
T PF08232_consen 43 GQENLKKDLKRRIKMLEYALKQERA 67 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 431
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.31 E-value=2.2e+02 Score=26.76 Aligned_cols=27 Identities=7% Similarity=0.321 Sum_probs=13.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 36 RMQSNRESARRSRMRKQKHLDDLIAQV 62 (163)
Q Consensus 36 R~lsNReSARRSR~RKq~~l~eLe~qv 62 (163)
|...||-..+.-++++...+..|...+
T Consensus 104 ~leqertq~qq~~e~~erEv~~l~~ll 130 (542)
T KOG0993|consen 104 NLEQERTQLQQNEEKLEREVKALMELL 130 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544444433
No 432
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=50.21 E-value=96 Score=22.49 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~ 98 (163)
.|+.|..-+..|+..|..|..+ +..|...|..-|.++.
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~~-------L~~LLesnrq~R~e~~ 71 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHAQ-------LQELLESNRQIRLEFQ 71 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3444444444444444444443 3445555555555544
No 433
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.21 E-value=1.5e+02 Score=31.08 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 42 ESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 42 eSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
++.+.+-.+++..+.++...+..+..|-.+....+..+......+...-..+|+++.+++..+++..+
T Consensus 531 ~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s 598 (1293)
T KOG0996|consen 531 LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRS 598 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 434
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=50.16 E-value=1.5e+02 Score=24.74 Aligned_cols=63 Identities=13% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
+..++.++.++..|..+-..|..+.+........+...-.....+...|...+..+..-+..+
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l 106 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQEL 106 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 435
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=50.12 E-value=42 Score=25.77 Aligned_cols=19 Identities=16% Similarity=0.510 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQ 71 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~ 71 (163)
+.+++|+.++..|+.+.+.
T Consensus 112 ~~l~~L~~~i~~L~~~~~~ 130 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEK 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554443
No 436
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=50.10 E-value=1.2e+02 Score=28.53 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLE 99 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~e 99 (163)
|+.+.+.+...+..+.....++..++..+..++..+...-..|+.+++.
T Consensus 444 k~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 444 KLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666666666666665555556555543
No 437
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=50.09 E-value=1.5e+02 Score=24.63 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041765 89 ENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 89 EN~~Lraql~eL~~rl~~l~ 108 (163)
.+..|+..+..|.++|..|.
T Consensus 108 q~~~~~~~v~~~~q~~~~l~ 127 (189)
T TIGR02132 108 QAPALKKDVTKLKQDIKSLD 127 (189)
T ss_pred hCchHHhHHHHHHHHHHHHH
Confidence 34444444555554444443
No 438
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.00 E-value=2.1e+02 Score=26.26 Aligned_cols=10 Identities=30% Similarity=0.258 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 041765 89 ENSVLRAQLL 98 (163)
Q Consensus 89 EN~~Lraql~ 98 (163)
|-..||+++.
T Consensus 277 Ei~~LKqeLa 286 (395)
T PF10267_consen 277 EIYNLKQELA 286 (395)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 439
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=49.96 E-value=1.7e+02 Score=25.93 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765 48 RMRKQKHLDDLIAQVDQLRKENNQILTSVNITT 80 (163)
Q Consensus 48 R~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~ 80 (163)
|.+..+.+.+|+.+...|..+|...+..+..+.
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~ 135 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLP 135 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444555555555555555444444443333
No 440
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=49.84 E-value=54 Score=24.29 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 041765 85 NIESENSVLRAQLLELTQRLDSLNDILNFINTSSGI 120 (163)
Q Consensus 85 ~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~~ 120 (163)
.++.|+..|+.++.+|+.++..|...+.+...-+-+
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~~~ 110 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWI 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence 466777778888888888888888888777655544
No 441
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.83 E-value=1.2e+02 Score=23.49 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 46 RSRMRKQKHLDDLIAQVDQLRKENNQILT-------SVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 46 RSR~RKq~~l~eLe~qv~~L~~EN~~L~~-------~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
.-|.++...++.++..+...+.+-..|.. ++..++..+..++.+-..++......
T Consensus 110 ~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 110 DDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444432 34444444444444444444443333
No 442
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=49.79 E-value=2.2e+02 Score=30.30 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
.+.|..+.+.|-.+-+.-...++.|+..|..-+.....+.++|.-|..|| ++++..|+.
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~---~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRV---ESVLDHINE 1749 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH---HHHHHHHhh
Confidence 34455555555555555555566666655555555555556666665555 445555543
No 443
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=49.78 E-value=60 Score=29.10 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhHHHH
Q 041765 63 DQLRKENNQILTSVNIT 79 (163)
Q Consensus 63 ~~L~~EN~~L~~~i~~l 79 (163)
-.|..||++|+.++..|
T Consensus 60 ~~L~~EN~~Lk~Ena~L 76 (337)
T PRK14872 60 LVLETENFLLKERIALL 76 (337)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555544444
No 444
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=49.40 E-value=35 Score=23.28 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 82 HYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 82 ~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
.+..+..|-+.|++++..|+.+|..+..
T Consensus 4 ELr~VL~ERNeLK~~v~~leEEL~~yk~ 31 (60)
T PF11461_consen 4 ELREVLQERNELKARVFLLEEELAYYKS 31 (60)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455777888899999999999888775
No 445
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=49.37 E-value=63 Score=30.34 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 76 VNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
|..|+.++....+||..|..++.+|...-
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N 302 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSN 302 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhcc
Confidence 44455555556666666666666555433
No 446
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=49.36 E-value=2e+02 Score=25.99 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 81 QHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
+++..+..+...++.++..++.++..+...
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~ 233 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQ 233 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 447
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=49.34 E-value=1.4e+02 Score=23.99 Aligned_cols=84 Identities=17% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN---------------------DILNFI 114 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~---------------------~il~~~ 114 (163)
++|..-+..| .+-+.+..+|..|......+...-..+-.+|.+.+..|..+- +||.|.
T Consensus 12 ~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~v~~~eLL~YA 90 (188)
T PF10018_consen 12 DELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPDQADEKLKSIPKAEKRPVDYEELLSYA 90 (188)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCHHHHHHHH
Q ss_pred hccCCCCCC----------CCCCCCCCCCCcCcCCCCC
Q 041765 115 NTSSGILDT----------TDHHHHPHAHDDFINNNPM 142 (163)
Q Consensus 115 ~~~~~~~~~----------~~~~~~~~~~d~~~~~~pw 142 (163)
..-+....+ |..+.=..+.+.++- ||
T Consensus 91 ~rISk~t~~p~~~~~~~~~P~~~~~~~~~~~~~~--Pw 126 (188)
T PF10018_consen 91 HRISKFTSAPPTFPSGSIAPNNWQPGPPSGDFFR--PW 126 (188)
T ss_pred HHHHHhcCCCCCCCCCCcCCcccccccccccccC--CC
No 448
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=49.32 E-value=2e+02 Score=27.08 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 80 TQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 80 ~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
+.++..++.||..|+.|+..|..+-..
T Consensus 447 ~~r~~~~eqe~ek~~kqiekLK~kh~~ 473 (488)
T PF06548_consen 447 QERAMDAEQENEKAKKQIEKLKRKHKM 473 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778899999999988875543
No 449
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.17 E-value=3.3e+02 Score=28.39 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQ 71 (163)
Q Consensus 57 eLe~qv~~L~~EN~~ 71 (163)
+|+.++..+...+++
T Consensus 791 dl~keik~~k~~~e~ 805 (1174)
T KOG0933|consen 791 DLEKEIKTAKQRAEE 805 (1174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444433333
No 450
>PF14645 Chibby: Chibby family
Probab=49.11 E-value=1e+02 Score=23.37 Aligned_cols=9 Identities=33% Similarity=0.737 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 041765 89 ENSVLRAQL 97 (163)
Q Consensus 89 EN~~Lraql 97 (163)
||+.|+-++
T Consensus 86 ENN~Lklk~ 94 (116)
T PF14645_consen 86 ENNLLKLKI 94 (116)
T ss_pred HHHHHHHHH
Confidence 333333333
No 451
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=48.99 E-value=3.4e+02 Score=28.52 Aligned_cols=11 Identities=0% Similarity=-0.109 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 041765 53 KHLDDLIAQVD 63 (163)
Q Consensus 53 ~~l~eLe~qv~ 63 (163)
+++++++..+.
T Consensus 882 ~~le~ae~~l~ 892 (1353)
T TIGR02680 882 ARAARAESDAR 892 (1353)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 452
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.87 E-value=2.4e+02 Score=26.60 Aligned_cols=62 Identities=13% Similarity=0.252 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
+.-...+...+..+...-..+..+...+...+..|..+-..-|.++..+...|......+..
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek 432 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK 432 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555555555555555555555555566666665555555554433
No 453
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.80 E-value=1.2e+02 Score=31.20 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 80 TQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 80 ~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
....+....|+.+|+.+-+.|..++..++.+|.-+..
T Consensus 402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkE 438 (1243)
T KOG0971|consen 402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKE 438 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777788888777777776643
No 454
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=48.70 E-value=47 Score=25.18 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhHHH
Q 041765 63 DQLRKENNQILTSVNI 78 (163)
Q Consensus 63 ~~L~~EN~~L~~~i~~ 78 (163)
.+|+.||+-|+-+++.
T Consensus 82 ~~LeEENNlLklKiev 97 (108)
T cd07429 82 QQLEEENNLLKLKIEV 97 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445444444433
No 455
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=48.70 E-value=75 Score=24.37 Aligned_cols=11 Identities=18% Similarity=0.564 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 041765 55 LDDLIAQVDQL 65 (163)
Q Consensus 55 l~eLe~qv~~L 65 (163)
++++..++..|
T Consensus 53 l~~i~~~l~~L 63 (141)
T PF13874_consen 53 LKEINDKLEEL 63 (141)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 456
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=48.67 E-value=1.4e+02 Score=30.42 Aligned_cols=12 Identities=42% Similarity=0.506 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 041765 41 RESARRSRMRKQ 52 (163)
Q Consensus 41 ReSARRSR~RKq 52 (163)
|+.|+..+..++
T Consensus 729 ~e~A~~~qq~~q 740 (984)
T COG4717 729 REAAREEQQLTQ 740 (984)
T ss_pred HHHHHHHHHHHH
Confidence 445555554443
No 457
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=48.56 E-value=38 Score=27.40 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041765 85 NIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 85 ~l~~EN~~Lraql~eL~~rl 104 (163)
.|..|-..||.++ .+++++
T Consensus 35 RLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 35 RLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHH-HHHHHh
Confidence 3344444444444 444443
No 458
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=48.56 E-value=26 Score=30.02 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041765 79 TTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 79 l~~~~~~l~~EN~~Lraql~eL 100 (163)
..+++.+|+.|...||+||+.+
T Consensus 120 AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778899999999999876
No 459
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=48.54 E-value=78 Score=21.44 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 041765 55 LDDLIAQVDQLRKENNQILTS 75 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~ 75 (163)
+++|+.++..|+.|...+...
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAA 43 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444444333
No 460
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=48.49 E-value=1.6e+02 Score=24.50 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhcc
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL-------------LELTQRLDSLNDILNFINTS 117 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql-------------~eL~~rl~~l~~il~~~~~~ 117 (163)
+..|+..+..|..-.......+..+.+.+..-..+...+|.+. ..|+..+..+...|.....+
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~s 99 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASES 99 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666666666666666666666777777777764 46666776666666655443
No 461
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=48.44 E-value=80 Score=24.97 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 041765 78 ITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGI 120 (163)
Q Consensus 78 ~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~~ 120 (163)
.+..++..+..+-..|++++..|...+..+...+..++...+.
T Consensus 10 ~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~ 52 (145)
T COG1730 10 ELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGA 52 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444555566667777777777777777776666655443
No 462
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=48.36 E-value=98 Score=25.50 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIE 87 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~ 87 (163)
.-..++..|+.++..|..+++.++.+++.|.
T Consensus 127 ssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLT 157 (179)
T PF13942_consen 127 SSDSELDALRQQQQRLQYQLDTTTRKLENLT 157 (179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344555555555555555555555544443
No 463
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=48.18 E-value=1.7e+02 Score=24.69 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 63 DQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 63 ~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
..|..+...+...+..+.+.....+.|...|+.++...+..+
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~ 119 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDE 119 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555555555555554433
No 464
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=48.10 E-value=1.3e+02 Score=23.29 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
++++.|..++.+...-...+..++..
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~ 93 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTE 93 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44445554444444444444444433
No 465
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=48.10 E-value=1.2e+02 Score=23.76 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTS-----VNITTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~-----i~~l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
....+|..++.+++.|...+..+ -..+++++..++.|...+.++...-+....
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~ 97 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFD 97 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666554322 233444455555555555544444433333
No 466
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=48.07 E-value=37 Score=22.49 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITT 80 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~ 80 (163)
.....++..|+.||..|..++..++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778888888888888876543
No 467
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=48.02 E-value=1.2e+02 Score=23.04 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041765 89 ENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 89 EN~~Lraql~eL~~rl~~l~ 108 (163)
+-..|+.++..|..+|..|.
T Consensus 84 ~~~~l~~rvd~Lerqv~~Le 103 (108)
T COG3937 84 EMDELTERVDALERQVADLE 103 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555554
No 468
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=48.01 E-value=89 Score=30.12 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 60 AQVDQLRKENNQILTSVNITTQ------------HYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 60 ~qv~~L~~EN~~L~~~i~~l~~------------~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
..+..|+.||..|+.++..+.. .+.....|...|++++..+..+..-|.+|...
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ 631 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKA 631 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567788888877744321 12334556788888888888888888877653
No 469
>PF15058 Speriolin_N: Speriolin N terminus
Probab=47.86 E-value=24 Score=29.46 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 75 SVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 75 ~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
.+.-+.++++.|..||..||.++.-++. -+.|...|
T Consensus 6 ~yeGlrhqierLv~ENeeLKKlVrLirE-N~eLksaL 41 (200)
T PF15058_consen 6 NYEGLRHQIERLVRENEELKKLVRLIRE-NHELKSAL 41 (200)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHH
Confidence 3455678888999999999999976653 33444443
No 470
>PRK01156 chromosome segregation protein; Provisional
Probab=47.83 E-value=2.8e+02 Score=27.16 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 79 TTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 79 l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+...+..+..+-..|..++.++...+..|...+..+.
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~ 450 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN 450 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344445555555555555555555555555554444
No 471
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=47.80 E-value=49 Score=27.27 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQL 65 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L 65 (163)
+..++++.+|+.+|..|
T Consensus 102 e~~~~e~~elr~~~~~l 118 (181)
T KOG3335|consen 102 EKRKQEIMELRLKVEKL 118 (181)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555665555543
No 472
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=47.79 E-value=2e+02 Score=25.47 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 73 LTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 73 ~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
+.+-..+.-+++.|+..|..||.|+.+|..+++.|..+|.-+
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667788999999999999999999999999887644
No 473
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.63 E-value=3.5e+02 Score=28.16 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVL 93 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~L 93 (163)
..+++|..++..+..+...+..++..+......+..+...+
T Consensus 888 ~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 888 EQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 34444444444444444444444544444444444444333
No 474
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=47.62 E-value=1.3e+02 Score=23.23 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 31 QRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKEN-NQILTSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 31 eRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN-~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
....+.+...+.++..........+..|+.....|..+. ..+...+..|---+..+..-+..+|.++.+|
T Consensus 40 ~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 40 EAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
No 475
>PLN02320 seryl-tRNA synthetase
Probab=47.59 E-value=2.5e+02 Score=26.54 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------HHHHHHHHHHHHHHHH
Q 041765 35 KRMQSNRESARRSRMRKQ-----KHLDDLIAQVDQLRKENNQILTSVNITTQHYM---------NIESENSVLRAQLLEL 100 (163)
Q Consensus 35 rR~lsNReSARRSR~RKq-----~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~---------~l~~EN~~Lraql~eL 100 (163)
|-+..|.+.-+++-.+|. ..+..|..+...+..+-..|+.+.+.+..++. .+..+-..|+.++.+|
T Consensus 70 k~ir~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~l 149 (502)
T PLN02320 70 KWIRDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTL 149 (502)
T ss_pred HHHHhCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 041765 101 TQRLDSLNDILNFI 114 (163)
Q Consensus 101 ~~rl~~l~~il~~~ 114 (163)
...+..+.+-+..+
T Consensus 150 e~~~~~~~~~l~~~ 163 (502)
T PLN02320 150 EEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHH
No 476
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=47.45 E-value=1.3e+02 Score=23.26 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVN-----ITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~-----~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
.+.+..++.++.+|+.+-..+..++. ....--..++.|-+.+..+...|..++..+..+
T Consensus 26 ~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~L 89 (131)
T PF11068_consen 26 QEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQKL 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 477
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=47.38 E-value=2.5e+02 Score=26.96 Aligned_cols=78 Identities=10% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 36 RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 36 R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
|..+-=|--..+.+|-...+.+.+..+...+.+-..|--++.....++...-.+|..+++.+..|..+++.+.+++..
T Consensus 32 rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~~ 109 (604)
T KOG3564|consen 32 RLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLKC 109 (604)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
No 478
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=47.29 E-value=1.6e+02 Score=24.14 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 48 RMRKQKHLDDLIAQVDQLRKENNQILTSVNIT-----------TQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 48 R~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l-----------~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
|..=+..|+.++.++..-...+..|...+... ..++..+..++..|..++..|..+|..-...|
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~L 194 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKEREL 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 479
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=47.09 E-value=3.4e+02 Score=27.92 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
+-++.+|-+.-=.-|-.--+||.+ .+..+...|+++-..+...+..+++....++.+...|....+++++++..+..
T Consensus 324 enmkltrqkadirc~LlEarrk~e---gfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 324 ENMKLTRQKADIRCALLEARRKAE---GFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhcc
Q 041765 110 ILNFINTS 117 (163)
Q Consensus 110 il~~~~~~ 117 (163)
-+-.++..
T Consensus 401 ~if~~e~~ 408 (1265)
T KOG0976|consen 401 HIFRLEQG 408 (1265)
T ss_pred hhhhhhhc
No 480
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=47.06 E-value=18 Score=33.98 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQH 82 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~ 82 (163)
+++.+++|++|+++|+++...|..+++.++++
T Consensus 29 ~~qkie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 29 LLQKIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccchhhHh
No 481
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.94 E-value=2.9e+02 Score=29.13 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041765 38 QSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTS 117 (163)
Q Consensus 38 lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~ 117 (163)
+++=+.++-+=.+...++++....+..++.+-..+..++......+..+..+-..|+.++..+++++..+.+.++...+.
T Consensus 520 ~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~ 599 (1293)
T KOG0996|consen 520 LKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR 599 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred C
Q 041765 118 S 118 (163)
Q Consensus 118 ~ 118 (163)
+
T Consensus 600 ~ 600 (1293)
T KOG0996|consen 600 N 600 (1293)
T ss_pred h
No 482
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=46.75 E-value=1.6e+02 Score=23.98 Aligned_cols=65 Identities=8% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 48 RMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 48 R~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
|.++..++..+...+..++..-..|......-..++..++.|-..+...+.....+...+.+.+.
T Consensus 110 R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k 174 (216)
T cd07627 110 RQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIK 174 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=46.55 E-value=2.2e+02 Score=25.52 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
++.++.+-..+..|..+|..|..++..|......+..+...+-..-.++...| +...+.+||+
T Consensus 129 ~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L--~~KF~~vLNe 191 (342)
T PF06632_consen 129 RELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDL--YAKFVLVLNE 191 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
No 484
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=46.45 E-value=1.3e+02 Score=30.17 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+.+-|++|+..|...+..-..+....+.||..+..++..|..|...|...+....
T Consensus 705 q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k 759 (961)
T KOG4673|consen 705 QLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELK 759 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=46.43 E-value=58 Score=24.14 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESEN 90 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN 90 (163)
+..++.++..|+.++.+|..++..|+....-...-|
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~ 108 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
No 486
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=46.38 E-value=1.6e+02 Score=29.29 Aligned_cols=61 Identities=21% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
.+.+.+|..++..+..-|..+..++....+.+..++.....+.+++..|..++..|..-|.
T Consensus 630 E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 630 EQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
No 487
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=46.14 E-value=1e+02 Score=21.62 Aligned_cols=58 Identities=19% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHh
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESEN-------SVLRAQ-LLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN-------~~Lraq-l~eL~~rl~~l~~il~~~~ 115 (163)
|...|..|..|+..|..++....+.+..+..+. ..+..+ -.+-.-+.+.+|.+..++|
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK~QAVNKLAEIMN 66 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLKQQAVNKLAEIMN 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 488
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=46.13 E-value=1.5e+02 Score=30.31 Aligned_cols=67 Identities=15% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTS 117 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~ 117 (163)
.+++|.-|..-+..++.....|..-...+.+....++.-|.+|-.++.+...+++.+++.|+.+..+
T Consensus 240 ~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt 306 (1265)
T KOG0976|consen 240 QKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQT 306 (1265)
T ss_pred hHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
No 489
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=46.06 E-value=1.3e+02 Score=23.09 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041765 48 RMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVL 93 (163)
Q Consensus 48 R~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~L 93 (163)
+..|..-+++|+.+++.|+.....|..+-..+.+++..|.++...+
T Consensus 65 k~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 65 KVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PLN03188 kinesin-12 family protein; Provisional
Probab=46.00 E-value=1.2e+02 Score=31.92 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 041765 59 IAQVDQLRKENNQILTSVNIT------------------------TQHYMNIESENSVLRAQLLELTQRL-DSLNDILNF 113 (163)
Q Consensus 59 e~qv~~L~~EN~~L~~~i~~l------------------------~~~~~~l~~EN~~Lraql~eL~~rl-~~l~~il~~ 113 (163)
|.+..-|+.||..|+.++.++ ++++..++.||..|+.|+..|+.+- ..+..+=++
T Consensus 1172 eker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~ 1251 (1320)
T PLN03188 1172 EKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQL 1251 (1320)
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhcc
Q 041765 114 INTS 117 (163)
Q Consensus 114 ~~~~ 117 (163)
+..+
T Consensus 1252 ~aes 1255 (1320)
T PLN03188 1252 VAES 1255 (1320)
T ss_pred Hhhc
No 491
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=45.79 E-value=2.3e+02 Score=25.63 Aligned_cols=67 Identities=16% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 41 RESARRSRMRKQKHLDDLIAQVDQLRKENNQILT-------------SVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 41 ReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~-------------~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
+...++.-.+-.+.+..+..++..++..-..+.. .+..+.+.+..+..+...|..++.+|...+...
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 492
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=45.71 E-value=2.3e+02 Score=25.65 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 041765 35 KRMQSNRESARRSRMRK-------QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESE----NSVLRAQLLELTQR 103 (163)
Q Consensus 35 rR~lsNReSARRSR~RK-------q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~E----N~~Lraql~eL~~r 103 (163)
|-...|.+.-+.+=.+| -..+-.|..+...+..+-+.|+.+.+.+..++..+... -..|++++.+|.++
T Consensus 5 k~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~ 84 (418)
T TIGR00414 5 KLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEE 84 (418)
T ss_pred HHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhc
Q 041765 104 LDSLNDILNFINT 116 (163)
Q Consensus 104 l~~l~~il~~~~~ 116 (163)
+..+...+..++.
T Consensus 85 ~~~~~~~~~~~~~ 97 (418)
T TIGR00414 85 LTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHH
No 493
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=45.59 E-value=67 Score=24.33 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 74 TSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
..+..++.+...|+.||+-||-+++-|-+-|..
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=45.47 E-value=7.5 Score=29.05 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 62 VDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 62 v~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
+..|..+.-.+.+.++.+...+..+..+-..|++++.+|..+.
T Consensus 1 ~~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 1 IQELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp ------------------------------------------H
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 495
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=45.47 E-value=1.6e+02 Score=26.01 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041765 58 LIAQVDQLRKENNQILTS-----VNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTS 117 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~-----i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~ 117 (163)
|.+++..|..||.+|-.. |..|..++.--.+.|..||..-.+|-+-+..|.+=+.-++++
T Consensus 215 LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsT 279 (330)
T KOG2991|consen 215 LMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQST 279 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhh
No 496
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=45.25 E-value=1.7e+02 Score=24.04 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
.....-|..++..|..++..|...+........-+...-..+..++..+..++..|..+|.
T Consensus 149 ~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln 209 (240)
T PF12795_consen 149 EAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLN 209 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=45.18 E-value=2.4e+02 Score=25.66 Aligned_cols=64 Identities=13% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
++.++.+...+..|+.|---.+.+-......+..+..||.+--..+..|+-+++.|..++..+.
T Consensus 249 K~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq 312 (391)
T KOG1850|consen 249 KQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQ 312 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=45.12 E-value=2.3e+02 Score=25.31 Aligned_cols=69 Identities=23% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQ----ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTS 117 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~----L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~ 117 (163)
.+...|+..|..+|..|+..-.. -...+....+....+..||..|+..+..-..|...|...+.--+++
T Consensus 225 e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lsesEss 297 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSESESS 297 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=45.04 E-value=92 Score=30.48 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
+.+++|..+-..|+.|+...+.---.+++++..++.|...+|+++.+-+++
T Consensus 329 akVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 329 AKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 500
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=44.86 E-value=1.1e+02 Score=21.80 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
++-.+|..++..-+.|...|..-++.+..++.....-|..|..+...++.. ..++.
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~-~~~~~ 60 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS-NDLNK 60 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccchh
Done!