Query 041765
Match_columns 163
No_of_seqs 200 out of 868
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 17:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 2.2E-15 7.7E-20 99.8 6.2 52 32-83 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.4 5E-13 1.7E-17 90.4 8.9 48 31-78 1-48 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.3 5.3E-12 1.8E-16 84.6 8.7 47 32-78 1-47 (61)
4 2dgc_A Protein (GCN4); basic d 99.3 2.2E-12 7.5E-17 87.5 6.6 47 36-82 13-59 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.3 1.4E-11 4.8E-16 82.8 7.6 48 33-80 2-49 (62)
6 1gd2_E Transcription factor PA 99.3 7E-12 2.4E-16 86.8 5.8 61 32-106 8-68 (70)
7 1ci6_A Transcription factor AT 99.1 2.1E-10 7.2E-15 77.5 8.3 46 32-77 2-47 (63)
8 1hjb_A Ccaat/enhancer binding 98.8 3.4E-08 1.2E-12 70.8 9.8 62 30-112 13-74 (87)
9 1gu4_A CAAT/enhancer binding p 98.7 5.8E-08 2E-12 68.3 9.1 48 30-77 13-60 (78)
10 3a5t_A Transcription factor MA 98.6 1.6E-09 5.5E-14 80.5 -3.7 69 28-110 33-101 (107)
11 2wt7_B Transcription factor MA 98.2 1.3E-05 4.4E-10 57.8 10.1 65 28-106 23-87 (90)
12 2oqq_A Transcription factor HY 97.0 0.0023 7.9E-08 39.9 6.0 39 52-97 2-40 (42)
13 2jee_A YIIU; FTSZ, septum, coi 96.8 0.014 4.9E-07 41.1 9.7 55 56-110 23-77 (81)
14 1skn_P DNA-binding domain of S 96.7 0.00082 2.8E-08 48.3 2.9 32 28-59 58-89 (92)
15 3hnw_A Uncharacterized protein 96.2 0.069 2.4E-06 40.6 10.7 62 50-111 72-133 (138)
16 1deb_A APC protein, adenomatou 96.1 0.028 9.4E-07 36.4 7.0 47 55-101 5-51 (54)
17 2jee_A YIIU; FTSZ, septum, coi 95.8 0.15 5E-06 35.9 10.2 59 54-112 7-72 (81)
18 1ci6_A Transcription factor AT 95.3 0.067 2.3E-06 35.4 6.7 40 73-112 22-61 (63)
19 1t2k_D Cyclic-AMP-dependent tr 95.0 0.089 3.1E-06 34.3 6.6 38 74-111 22-59 (61)
20 2wt7_A Proto-oncogene protein 95.0 0.11 3.7E-06 34.3 7.0 40 74-113 23-62 (63)
21 2w6a_A ARF GTPase-activating p 94.8 0.094 3.2E-06 35.0 6.1 41 55-95 22-62 (63)
22 3s9g_A Protein hexim1; cyclin 94.5 0.26 8.8E-06 35.9 8.5 43 56-98 40-89 (104)
23 1gu4_A CAAT/enhancer binding p 94.5 0.062 2.1E-06 37.4 5.1 38 74-111 36-73 (78)
24 1go4_E MAD1 (mitotic arrest de 94.3 0.38 1.3E-05 35.0 9.0 63 54-116 13-96 (100)
25 3he5_A Synzip1; heterodimeric 94.2 0.24 8.3E-06 30.9 6.7 45 54-98 4-48 (49)
26 2c9l_Y EB1, zebra, BZLF1 trans 94.1 0.35 1.2E-05 31.8 7.7 36 36-71 5-40 (63)
27 3hnw_A Uncharacterized protein 93.7 0.94 3.2E-05 34.2 10.7 55 60-114 75-129 (138)
28 3oja_B Anopheles plasmodium-re 93.6 0.79 2.7E-05 40.4 11.6 51 55-105 511-561 (597)
29 1jnm_A Proto-oncogene C-JUN; B 93.4 0.11 3.7E-06 34.1 4.3 40 73-112 21-60 (62)
30 2dfs_A Myosin-5A; myosin-V, in 93.2 1.3 4.3E-05 43.4 13.3 59 51-109 989-1051(1080)
31 1gd2_E Transcription factor PA 92.2 0.3 1E-05 33.2 5.3 26 53-78 36-61 (70)
32 3vmx_A Voltage-gated hydrogen 92.1 0.84 2.9E-05 29.0 7.0 39 59-97 3-41 (48)
33 2eqb_B RAB guanine nucleotide 92.1 1.4 4.7E-05 31.8 9.0 50 54-103 13-62 (97)
34 2v71_A Nuclear distribution pr 92.0 1.3 4.5E-05 35.3 9.8 56 58-113 93-148 (189)
35 1p9i_A Cortexillin I/GCN4 hybr 91.9 0.24 8.3E-06 28.2 3.8 23 82-104 7-29 (31)
36 2zxx_A Geminin; coiled-coil, c 91.9 1 3.5E-05 31.4 7.9 44 67-114 34-77 (79)
37 2kz5_A Transcription factor NF 91.6 0.012 4E-07 42.3 -2.3 24 30-53 64-87 (91)
38 2xdj_A Uncharacterized protein 91.5 1.8 6.1E-05 30.2 8.9 17 58-74 25-41 (83)
39 3a2a_A Voltage-gated hydrogen 91.2 0.71 2.4E-05 30.3 6.0 39 59-97 10-48 (58)
40 3m91_A Proteasome-associated A 91.0 1.3 4.4E-05 28.3 7.1 21 56-76 12-32 (51)
41 3efg_A Protein SLYX homolog; x 90.8 0.85 2.9E-05 31.4 6.5 51 58-108 12-62 (78)
42 3cve_A Homer protein homolog 1 90.7 1.9 6.5E-05 29.5 8.2 46 56-101 3-48 (72)
43 3iv1_A Tumor susceptibility ge 90.7 2.8 9.7E-05 29.0 9.2 61 51-111 16-76 (78)
44 2lw1_A ABC transporter ATP-bin 90.5 2.6 8.8E-05 29.1 9.0 61 51-111 20-86 (89)
45 3m48_A General control protein 90.5 0.35 1.2E-05 28.5 3.7 24 55-78 2-25 (33)
46 2oxj_A Hybrid alpha/beta pepti 90.4 0.58 2E-05 27.7 4.6 24 54-77 2-25 (34)
47 3mq7_A Bone marrow stromal ant 89.9 2.2 7.5E-05 31.8 8.5 47 58-104 62-108 (121)
48 2dgc_A Protein (GCN4); basic d 89.9 0.48 1.6E-05 31.3 4.5 33 73-105 29-61 (63)
49 3a7p_A Autophagy protein 16; c 89.7 4.4 0.00015 31.4 10.4 38 60-97 96-133 (152)
50 4emc_A Monopolin complex subun 89.7 1.9 6.4E-05 34.6 8.6 58 52-109 12-69 (190)
51 1kd8_A GABH AIV, GCN4 acid bas 89.6 0.48 1.7E-05 28.4 3.9 26 54-79 2-27 (36)
52 1kd8_B GABH BLL, GCN4 acid bas 89.6 0.84 2.9E-05 27.3 4.9 26 54-79 2-27 (36)
53 3cvf_A Homer-3, homer protein 89.5 1.2 3.9E-05 31.1 6.4 46 56-101 9-54 (79)
54 1go4_E MAD1 (mitotic arrest de 89.4 1.5 5E-05 31.8 7.1 30 80-109 67-96 (100)
55 3jsv_C NF-kappa-B essential mo 89.4 3.9 0.00014 29.3 9.2 78 38-115 8-88 (94)
56 2yy0_A C-MYC-binding protein; 89.0 0.96 3.3E-05 29.0 5.3 13 61-73 20-32 (53)
57 1wlq_A Geminin; coiled-coil; 2 88.9 4.5 0.00015 28.4 9.3 45 67-115 38-82 (83)
58 1t6f_A Geminin; coiled-coil, c 88.3 0.89 3E-05 27.3 4.4 28 67-94 7-34 (37)
59 3mq7_A Bone marrow stromal ant 88.1 3.5 0.00012 30.8 8.5 34 81-114 71-104 (121)
60 3m91_A Proteasome-associated A 87.9 2.8 9.7E-05 26.7 6.9 39 60-98 9-47 (51)
61 1ic2_A Tropomyosin alpha chain 87.9 4.7 0.00016 27.3 8.7 52 53-104 20-71 (81)
62 3oja_B Anopheles plasmodium-re 87.7 6 0.0002 34.7 11.4 58 56-113 505-562 (597)
63 2dfs_A Myosin-5A; myosin-V, in 87.7 9.8 0.00034 37.2 13.7 27 56-82 987-1013(1080)
64 3c3f_A Alpha/beta peptide with 87.6 1.2 4.1E-05 26.3 4.6 24 54-77 2-25 (34)
65 1i84_S Smooth muscle myosin he 87.5 5.1 0.00017 39.2 11.7 26 81-106 913-938 (1184)
66 3o0z_A RHO-associated protein 87.2 9.3 0.00032 29.9 11.1 30 83-112 99-128 (168)
67 2oqq_A Transcription factor HY 87.2 2.9 9.9E-05 25.8 6.3 35 77-111 6-40 (42)
68 2wvr_A Geminin; DNA replicatio 87.1 4.6 0.00016 32.7 9.4 45 67-115 115-159 (209)
69 1dh3_A Transcription factor CR 87.0 0.7 2.4E-05 29.7 3.7 31 74-104 22-52 (55)
70 1wt6_A Myotonin-protein kinase 86.1 6.8 0.00023 27.3 10.2 58 40-100 14-71 (81)
71 3c3g_A Alpha/beta peptide with 85.6 1.8 6.2E-05 25.4 4.6 22 55-76 2-23 (33)
72 3u1c_A Tropomyosin alpha-1 cha 85.3 7.9 0.00027 27.4 10.4 54 51-104 21-74 (101)
73 2v4h_A NF-kappa-B essential mo 85.3 9.1 0.00031 28.1 11.6 71 39-109 31-104 (110)
74 2oxj_A Hybrid alpha/beta pepti 85.2 2.1 7.1E-05 25.3 4.7 30 75-104 2-31 (34)
75 2yy0_A C-MYC-binding protein; 85.1 2.1 7.2E-05 27.4 5.2 31 81-111 19-49 (53)
76 2wq1_A General control protein 85.0 2 6.9E-05 25.2 4.6 25 55-79 2-26 (33)
77 2hy6_A General control protein 85.0 1.6 5.5E-05 25.8 4.2 25 54-78 2-26 (34)
78 3s4r_A Vimentin; alpha-helix, 84.9 8 0.00027 27.1 10.4 46 59-104 22-72 (93)
79 3ra3_A P1C; coiled coil domain 84.3 2 6.7E-05 23.9 4.1 23 85-107 4-26 (28)
80 3efg_A Protein SLYX homolog; x 84.2 3.7 0.00013 28.1 6.5 52 64-115 11-62 (78)
81 1dip_A Delta-sleep-inducing pe 84.1 0.65 2.2E-05 32.2 2.6 24 72-95 20-43 (78)
82 1ic2_A Tropomyosin alpha chain 84.0 7.8 0.00027 26.2 9.4 22 85-106 45-66 (81)
83 2bni_A General control protein 84.0 1.6 5.4E-05 25.8 3.8 24 54-77 2-25 (34)
84 3m48_A General control protein 83.9 1.3 4.5E-05 26.0 3.5 28 77-104 3-30 (33)
85 3s9g_A Protein hexim1; cyclin 83.8 8.6 0.00029 27.9 8.5 27 52-78 64-90 (104)
86 1fmh_A General control protein 83.6 2.4 8.2E-05 24.4 4.4 25 55-79 3-27 (33)
87 3m9b_A Proteasome-associated A 83.6 1.8 6.2E-05 36.0 5.6 35 82-116 62-96 (251)
88 1uo4_A General control protein 83.6 1.7 5.7E-05 25.7 3.8 25 54-78 2-26 (34)
89 3tnu_A Keratin, type I cytoske 83.3 11 0.00039 27.5 10.0 49 57-105 49-108 (131)
90 1uii_A Geminin; human, DNA rep 82.7 3.8 0.00013 28.7 6.1 31 67-97 46-76 (83)
91 3a7p_A Autophagy protein 16; c 82.7 15 0.0005 28.4 12.6 45 56-100 85-129 (152)
92 4h22_A Leucine-rich repeat fli 82.4 12 0.00041 27.2 9.9 13 28-40 6-18 (103)
93 4h22_A Leucine-rich repeat fli 82.1 12 0.00042 27.1 8.9 17 93-109 63-79 (103)
94 3oja_A Leucine-rich immune mol 82.0 24 0.00081 30.3 12.8 41 67-107 435-475 (487)
95 3tnu_B Keratin, type II cytosk 81.9 13 0.00044 27.1 10.0 50 56-105 46-106 (129)
96 2v71_A Nuclear distribution pr 81.9 18 0.00061 28.8 14.1 52 61-112 89-140 (189)
97 3na7_A HP0958; flagellar bioge 81.5 16 0.00055 29.3 10.5 32 49-80 49-80 (256)
98 3a7o_A Autophagy protein 16; c 81.5 8.1 0.00028 26.4 7.2 27 76-102 48-74 (75)
99 4etp_A Kinesin-like protein KA 81.1 7 0.00024 33.9 8.7 22 56-77 6-27 (403)
100 1nkp_B MAX protein, MYC proto- 81.1 2.5 8.4E-05 28.7 4.6 28 84-111 50-77 (83)
101 1kd8_B GABH BLL, GCN4 acid bas 80.8 4.6 0.00016 24.1 5.1 31 76-106 3-33 (36)
102 1deb_A APC protein, adenomatou 80.7 5.1 0.00017 25.8 5.6 33 76-108 5-37 (54)
103 3bas_A Myosin heavy chain, str 80.7 12 0.0004 25.9 12.6 53 53-105 35-87 (89)
104 1a93_B MAX protein, coiled coi 80.6 2.9 9.9E-05 24.7 4.1 22 78-99 11-32 (34)
105 3nmd_A CGMP dependent protein 80.5 5 0.00017 27.4 5.9 7 55-61 42-48 (72)
106 3c3f_A Alpha/beta peptide with 80.4 4.2 0.00014 24.0 4.7 29 76-104 3-31 (34)
107 4etp_A Kinesin-like protein KA 80.4 7.1 0.00024 33.9 8.4 35 53-87 10-44 (403)
108 3c3g_A Alpha/beta peptide with 80.3 4.3 0.00015 23.8 4.7 29 76-104 2-30 (33)
109 1wle_A Seryl-tRNA synthetase; 80.2 14 0.00048 33.1 10.5 56 58-113 82-148 (501)
110 4emc_A Monopolin complex subun 80.1 5.7 0.00019 31.8 7.1 62 54-115 21-82 (190)
111 2wuj_A Septum site-determining 80.0 1.7 5.8E-05 28.0 3.3 24 80-103 33-56 (57)
112 3u59_A Tropomyosin beta chain; 79.8 13 0.00045 26.0 10.2 52 51-102 21-72 (101)
113 3ol1_A Vimentin; structural ge 79.8 15 0.00051 26.6 10.8 15 93-107 88-102 (119)
114 1gk6_A Vimentin; intermediate 79.8 9.7 0.00033 24.5 7.2 49 56-104 3-51 (59)
115 3u1c_A Tropomyosin alpha-1 cha 79.7 14 0.00047 26.1 12.4 13 95-107 86-98 (101)
116 3m9b_A Proteasome-associated A 79.5 2.9 9.8E-05 34.8 5.4 40 55-108 56-95 (251)
117 1p9i_A Cortexillin I/GCN4 hybr 79.5 3.1 0.00011 23.6 3.8 25 56-80 2-26 (31)
118 1ik9_A DNA repair protein XRCC 79.4 20 0.00067 28.7 10.2 37 57-93 136-172 (213)
119 2v66_B Nuclear distribution pr 79.1 16 0.00056 26.7 10.6 59 55-113 37-95 (111)
120 1lwu_C Fibrinogen gamma chain; 79.0 6.5 0.00022 33.6 7.6 29 81-109 26-54 (323)
121 1nkp_B MAX protein, MYC proto- 78.9 4.4 0.00015 27.4 5.4 29 78-106 51-79 (83)
122 2wt7_B Transcription factor MA 78.4 5.7 0.00019 28.1 5.9 32 83-114 50-81 (90)
123 3u06_A Protein claret segregat 78.1 7.7 0.00026 33.9 8.0 42 65-106 8-49 (412)
124 2l5g_B Putative uncharacterize 78.0 9.2 0.00032 23.5 6.0 34 78-111 6-39 (42)
125 3ra3_A P1C; coiled coil domain 77.6 1.6 5.6E-05 24.2 2.2 24 63-86 3-26 (28)
126 3swf_A CGMP-gated cation chann 77.5 15 0.0005 25.2 7.8 48 56-106 3-50 (74)
127 3nmd_A CGMP dependent protein 77.5 11 0.00038 25.6 7.0 12 93-104 52-63 (72)
128 1nlw_A MAD protein, MAX dimeri 77.5 6 0.00021 27.0 5.7 26 80-105 53-78 (80)
129 1hjb_A Ccaat/enhancer binding 77.2 12 0.00041 26.2 7.3 54 30-83 17-73 (87)
130 1am9_A Srebp-1A, protein (ster 76.7 6.8 0.00023 26.6 5.8 72 36-108 6-77 (82)
131 3na7_A HP0958; flagellar bioge 76.6 27 0.00094 27.9 14.1 18 56-73 93-110 (256)
132 2ocy_A RAB guanine nucleotide 76.6 13 0.00044 28.7 8.0 39 78-116 105-143 (154)
133 3u59_A Tropomyosin beta chain; 76.3 17 0.00059 25.4 10.7 13 102-114 86-98 (101)
134 1nlw_A MAD protein, MAX dimeri 76.2 4 0.00014 27.9 4.5 22 85-106 51-72 (80)
135 1wle_A Seryl-tRNA synthetase; 76.0 37 0.0013 30.4 12.0 79 39-117 48-145 (501)
136 2w83_C C-JUN-amino-terminal ki 76.0 17 0.00057 25.1 10.2 57 56-112 5-68 (77)
137 1kd8_A GABH AIV, GCN4 acid bas 75.6 6.5 0.00022 23.4 4.7 30 77-106 4-33 (36)
138 3oja_A Leucine-rich immune mol 75.4 34 0.0012 29.3 11.3 51 64-114 425-475 (487)
139 3vkg_A Dynein heavy chain, cyt 75.0 16 0.00056 39.9 10.7 67 42-108 2024-2104(3245)
140 2r2v_A GCN4 leucine zipper; co 74.7 7 0.00024 23.0 4.6 24 54-77 2-25 (34)
141 2j5u_A MREC protein; bacterial 74.6 1.5 5.3E-05 35.8 2.4 8 149-156 99-106 (255)
142 1dip_A Delta-sleep-inducing pe 74.2 3.9 0.00013 28.2 3.9 22 53-74 22-43 (78)
143 2oa5_A Hypothetical protein BQ 74.0 2.2 7.5E-05 31.4 2.8 26 52-77 7-32 (110)
144 2ve7_C Kinetochore protein NUF 73.1 2.7 9.1E-05 34.5 3.5 45 30-74 118-162 (250)
145 1am9_A Srebp-1A, protein (ster 73.0 6.4 0.00022 26.8 4.9 25 53-77 50-74 (82)
146 2dq0_A Seryl-tRNA synthetase; 72.9 16 0.00056 32.1 8.8 56 59-114 44-102 (455)
147 2ve7_C Kinetochore protein NUF 72.7 5.2 0.00018 32.8 5.1 33 74-106 148-180 (250)
148 3ghg_A Fibrinogen alpha chain; 72.4 45 0.0015 30.6 11.5 43 71-113 114-156 (562)
149 2fxo_A Myosin heavy chain, car 71.9 26 0.00089 25.5 14.7 61 55-115 64-124 (129)
150 3q8t_A Beclin-1; autophagy, AT 71.9 23 0.00078 24.8 12.4 65 50-114 22-86 (96)
151 2wuj_A Septum site-determining 71.1 4.7 0.00016 25.8 3.6 29 53-81 27-55 (57)
152 3qne_A Seryl-tRNA synthetase, 71.0 22 0.00076 31.9 9.2 56 59-114 46-104 (485)
153 3vkg_A Dynein heavy chain, cyt 71.0 25 0.00086 38.5 10.9 54 61-114 2029-2082(3245)
154 1nkp_A C-MYC, MYC proto-oncoge 70.6 11 0.00037 26.0 5.7 9 53-61 23-31 (88)
155 3i00_A HIP-I, huntingtin-inter 70.6 29 0.00098 25.5 8.3 49 48-103 35-83 (120)
156 3mq9_A Bone marrow stromal ant 70.5 30 0.001 29.5 9.7 22 83-104 445-466 (471)
157 3u06_A Protein claret segregat 70.4 19 0.00064 31.4 8.5 46 55-100 12-57 (412)
158 3s4r_A Vimentin; alpha-helix, 70.4 24 0.00083 24.6 9.7 31 76-106 58-88 (93)
159 2bni_A General control protein 70.4 5.4 0.00019 23.5 3.4 29 76-104 3-31 (34)
160 1uo4_A General control protein 69.4 6.7 0.00023 23.1 3.7 27 77-103 4-30 (34)
161 1g6u_A Domain swapped dimer; d 69.3 16 0.00054 22.5 5.5 27 81-107 20-46 (48)
162 1lwu_C Fibrinogen gamma chain; 69.3 15 0.0005 31.4 7.4 40 75-114 13-52 (323)
163 1ses_A Seryl-tRNA synthetase; 69.2 50 0.0017 28.6 11.0 31 83-113 66-96 (421)
164 2hy6_A General control protein 69.1 10 0.00034 22.3 4.4 28 77-104 4-31 (34)
165 3mq9_A Bone marrow stromal ant 68.5 50 0.0017 28.1 10.7 21 90-110 445-465 (471)
166 3he5_B Synzip2; heterodimeric 67.3 20 0.00068 22.4 6.8 18 58-75 8-25 (52)
167 1joc_A EEA1, early endosomal a 67.1 21 0.00071 26.0 6.9 38 54-91 12-49 (125)
168 3q0x_A Centriole protein; cent 66.8 45 0.0016 27.1 9.5 25 85-109 189-213 (228)
169 2lz1_A Nuclear factor erythroi 66.7 0.087 3E-06 37.7 -5.9 22 31-52 65-86 (90)
170 1fmh_A General control protein 66.4 14 0.00049 21.1 4.6 25 79-103 6-30 (33)
171 2xv5_A Lamin-A/C; structural p 66.1 27 0.00094 23.5 8.5 47 57-103 9-55 (74)
172 3w03_C DNA repair protein XRCC 65.6 9.3 0.00032 30.3 5.0 18 54-71 146-163 (184)
173 3bas_A Myosin heavy chain, str 65.5 30 0.001 23.7 10.2 54 56-109 31-84 (89)
174 3trt_A Vimentin; cytoskeleton, 65.5 26 0.00088 23.0 7.3 20 87-106 55-74 (77)
175 2wq1_A General control protein 65.2 16 0.00056 21.3 4.7 26 77-102 3-28 (33)
176 1ses_A Seryl-tRNA synthetase; 65.2 21 0.00071 31.1 7.7 64 53-116 28-92 (421)
177 1deq_A Fibrinogen (alpha chain 65.0 48 0.0017 29.1 9.8 46 69-114 115-160 (390)
178 2dq0_A Seryl-tRNA synthetase; 64.7 71 0.0024 28.0 11.1 62 55-116 33-97 (455)
179 3qh9_A Liprin-beta-2; coiled-c 64.6 33 0.0011 23.8 8.8 23 86-108 52-74 (81)
180 2xdj_A Uncharacterized protein 63.9 33 0.0011 23.6 9.5 34 76-109 22-55 (83)
181 3plt_A Sphingolipid long chain 63.5 24 0.00083 28.9 7.3 63 35-102 96-159 (234)
182 3swy_A Cyclic nucleotide-gated 63.5 24 0.00082 21.9 6.9 43 57-102 2-44 (46)
183 2e7s_A RAB guanine nucleotide 63.4 26 0.00089 26.5 6.9 49 55-103 34-82 (135)
184 1nkp_A C-MYC, MYC proto-oncoge 63.3 33 0.0011 23.5 7.8 15 86-100 71-85 (88)
185 3qne_A Seryl-tRNA synthetase, 63.1 84 0.0029 28.1 11.4 62 54-115 34-98 (485)
186 4b4t_K 26S protease regulatory 62.5 16 0.00054 32.0 6.4 49 68-116 43-91 (428)
187 1gk7_A Vimentin; intermediate 62.0 13 0.00046 22.2 4.1 20 79-98 18-37 (39)
188 3e98_A GAF domain of unknown f 61.9 39 0.0013 27.3 8.3 56 56-115 68-126 (252)
189 3htk_A Structural maintenance 61.8 26 0.0009 21.8 8.3 27 75-101 27-53 (60)
190 3ra3_B P2F; coiled coil domain 61.7 13 0.00045 20.5 3.7 20 86-105 5-24 (28)
191 1x8y_A Lamin A/C; structural p 60.3 38 0.0013 23.1 7.2 53 52-104 27-79 (86)
192 2oto_A M protein; helical coil 60.2 50 0.0017 24.5 11.0 32 55-86 52-83 (155)
193 3lay_A Zinc resistance-associa 60.2 36 0.0012 26.4 7.5 21 81-101 113-133 (175)
194 3lss_A Seryl-tRNA synthetase; 59.4 60 0.0021 29.0 9.7 28 87-114 109-137 (484)
195 1jcd_A Major outer membrane li 59.1 31 0.0011 21.9 7.6 26 54-79 5-30 (52)
196 2w83_C C-JUN-amino-terminal ki 58.9 41 0.0014 23.1 9.3 39 71-109 34-72 (77)
197 3swk_A Vimentin; cytoskeleton, 58.8 41 0.0014 23.0 8.5 31 85-115 46-83 (86)
198 3q0x_A Centriole protein; cent 58.7 54 0.0018 26.6 8.5 25 54-78 179-203 (228)
199 3i00_A HIP-I, huntingtin-inter 58.0 52 0.0018 24.1 9.5 43 54-96 16-62 (120)
200 1joc_A EEA1, early endosomal a 57.9 50 0.0017 23.9 9.0 16 89-104 19-34 (125)
201 1l8d_A DNA double-strand break 57.6 34 0.0012 23.7 6.4 33 84-116 13-45 (112)
202 2zvf_A Alanyl-tRNA synthetase; 57.3 12 0.00042 27.8 4.2 28 79-106 30-57 (171)
203 2v66_B Nuclear distribution pr 57.3 53 0.0018 23.9 13.8 31 63-93 38-68 (111)
204 3trt_A Vimentin; cytoskeleton, 57.2 38 0.0013 22.1 10.2 17 93-109 54-70 (77)
205 2oto_A M protein; helical coil 57.1 57 0.0019 24.2 10.0 27 78-104 54-80 (155)
206 3m0d_C TNF receptor-associated 57.1 37 0.0013 22.0 9.1 58 52-109 5-62 (65)
207 3q8t_A Beclin-1; autophagy, AT 57.0 47 0.0016 23.2 12.6 56 52-107 38-93 (96)
208 4ath_A MITF, microphthalmia-as 56.5 30 0.001 24.1 5.7 23 56-78 52-74 (83)
209 1zme_C Proline utilization tra 54.9 14 0.00049 23.2 3.7 24 52-75 43-66 (70)
210 3htk_A Structural maintenance 53.5 38 0.0013 21.0 8.5 44 54-97 13-56 (60)
211 3iox_A AGI/II, PA; alpha helix 53.0 1.3E+02 0.0045 27.2 10.8 64 52-115 8-79 (497)
212 2v4h_A NF-kappa-B essential mo 52.6 65 0.0022 23.5 11.5 46 62-107 64-109 (110)
213 2wvr_A Geminin; DNA replicatio 52.5 61 0.0021 26.1 7.7 47 73-119 114-160 (209)
214 1x8y_A Lamin A/C; structural p 52.2 53 0.0018 22.3 10.2 31 75-105 29-59 (86)
215 2akf_A Coronin-1A; coiled coil 52.0 31 0.0011 19.7 5.0 25 87-111 5-29 (32)
216 2ve7_A Kinetochore protein HEC 51.8 33 0.0011 28.7 6.4 52 59-120 184-235 (315)
217 2eqb_B RAB guanine nucleotide 51.5 63 0.0021 23.0 9.7 14 67-80 47-60 (97)
218 3oa7_A Head morphogenesis prot 51.4 69 0.0024 25.8 7.8 38 64-101 34-71 (206)
219 3w03_C DNA repair protein XRCC 50.5 64 0.0022 25.4 7.5 27 74-100 152-178 (184)
220 2ve7_A Kinetochore protein HEC 50.5 22 0.00074 29.8 5.1 28 53-80 185-212 (315)
221 2ocy_A RAB guanine nucleotide 50.2 83 0.0029 24.1 13.8 26 89-114 109-134 (154)
222 2i1j_A Moesin; FERM, coiled-co 49.9 15 0.0005 33.3 4.2 87 28-114 309-396 (575)
223 2r2v_A GCN4 leucine zipper; co 48.5 39 0.0013 19.8 4.7 27 77-103 4-30 (34)
224 3ghg_A Fibrinogen alpha chain; 48.0 88 0.003 28.7 8.9 47 51-97 108-154 (562)
225 1hlo_A Protein (transcription 47.9 40 0.0014 22.4 5.2 59 44-102 20-78 (80)
226 4dzn_A Coiled-coil peptide CC- 47.7 37 0.0013 19.3 5.1 16 60-75 9-24 (33)
227 3gpv_A Transcriptional regulat 47.5 51 0.0017 24.2 6.3 26 89-114 103-128 (148)
228 3he5_B Synzip2; heterodimeric 47.5 49 0.0017 20.6 7.0 39 69-107 5-43 (52)
229 3he4_A Synzip6; heterodimeric 47.4 37 0.0013 21.4 4.5 30 57-86 21-50 (56)
230 3lss_A Seryl-tRNA synthetase; 45.4 1.3E+02 0.0046 26.7 9.6 23 94-116 109-132 (484)
231 4b4t_K 26S protease regulatory 45.0 39 0.0013 29.4 6.0 46 56-108 45-90 (428)
232 1jcd_A Major outer membrane li 44.7 57 0.002 20.6 8.0 21 61-81 5-25 (52)
233 4ati_A MITF, microphthalmia-as 44.7 8.8 0.0003 27.9 1.5 28 36-63 27-54 (118)
234 3o0z_A RHO-associated protein 44.3 1.1E+02 0.0038 23.8 13.8 66 36-108 73-138 (168)
235 1uix_A RHO-associated kinase; 43.6 73 0.0025 21.5 8.4 30 58-87 2-31 (71)
236 1a93_B MAX protein, coiled coi 43.1 45 0.0015 19.5 4.1 19 58-76 12-30 (34)
237 1m1j_C Fibrinogen gamma chain; 42.9 1.7E+02 0.0058 25.5 11.5 46 71-116 88-133 (409)
238 2j5u_A MREC protein; bacterial 42.5 9.1 0.00031 31.1 1.5 11 66-76 25-35 (255)
239 2dq3_A Seryl-tRNA synthetase; 42.4 1.3E+02 0.0045 26.0 8.9 30 85-114 72-101 (425)
240 1zxa_A CGMP-dependent protein 42.2 44 0.0015 22.3 4.6 14 51-64 23-36 (67)
241 3qh9_A Liprin-beta-2; coiled-c 41.4 86 0.0029 21.7 10.4 17 55-71 28-44 (81)
242 2ke4_A CDC42-interacting prote 41.4 90 0.0031 21.9 9.2 65 52-116 21-90 (98)
243 3he5_A Synzip1; heterodimeric 40.9 62 0.0021 19.9 7.3 27 81-107 10-36 (49)
244 1fxk_C Protein (prefoldin); ar 40.5 95 0.0032 22.0 6.7 26 89-114 16-41 (133)
245 3he4_A Synzip6; heterodimeric 40.0 14 0.00049 23.4 1.7 29 81-109 24-52 (56)
246 1zxa_A CGMP-dependent protein 40.0 68 0.0023 21.3 5.3 30 83-112 27-56 (67)
247 2efr_A General control protein 39.8 1.2E+02 0.0042 23.0 10.2 60 42-101 94-153 (155)
248 1hlo_A Protein (transcription 39.5 28 0.00096 23.1 3.4 18 53-70 57-74 (80)
249 3vmx_A Voltage-gated hydrogen 39.2 70 0.0024 20.0 6.6 38 75-112 5-42 (48)
250 2yko_A LINE-1 ORF1P; RNA-bindi 39.1 73 0.0025 26.0 6.4 19 54-72 7-25 (233)
251 3mud_A DNA repair protein XRCC 39.1 1.4E+02 0.0047 23.4 8.0 21 57-77 132-152 (175)
252 1j1d_B Troponin T, TNT; THIN f 39.0 1.1E+02 0.0036 22.0 8.9 44 64-107 46-89 (106)
253 1lrz_A FEMA, factor essential 39.0 1.1E+02 0.0037 25.9 7.8 19 91-109 284-302 (426)
254 1m1j_A Fibrinogen alpha subuni 38.9 2.2E+02 0.0075 25.7 10.6 46 69-114 113-158 (491)
255 2er8_A Regulatory protein Leu3 38.8 18 0.00062 23.0 2.2 21 51-71 47-67 (72)
256 1s1c_X RHO-associated, coiled- 38.4 89 0.0031 21.0 9.6 31 57-87 3-33 (71)
257 3bbp_D GRIP and coiled-coil do 38.4 35 0.0012 23.1 3.6 29 79-107 34-62 (71)
258 4gkw_A Spindle assembly abnorm 38.4 1.3E+02 0.0045 22.9 7.5 9 86-94 145-153 (167)
259 2e62_A Protein AT5G25060; CWF2 38.3 83 0.0028 20.6 6.3 14 92-105 42-55 (61)
260 2w6a_A ARF GTPase-activating p 38.1 84 0.0029 20.6 7.3 38 72-109 18-55 (63)
261 1ik9_A DNA repair protein XRCC 38.0 1.5E+02 0.0051 23.5 10.3 30 51-80 137-166 (213)
262 1wt6_A Myotonin-protein kinase 37.4 1E+02 0.0034 21.3 9.7 40 67-106 31-70 (81)
263 3ibp_A Chromosome partition pr 37.4 1.9E+02 0.0065 24.5 9.3 35 52-86 223-257 (302)
264 3gp4_A Transcriptional regulat 36.9 1.2E+02 0.0041 22.0 7.7 25 84-108 91-115 (142)
265 4ath_A MITF, microphthalmia-as 36.8 1E+02 0.0035 21.3 7.6 41 52-103 38-78 (83)
266 1gk4_A Vimentin; intermediate 36.6 95 0.0033 20.8 9.7 51 52-102 25-75 (84)
267 1fzc_C Fibrin; blood coagulati 36.2 23 0.0008 30.1 3.1 21 90-110 20-40 (319)
268 3tnu_B Keratin, type II cytosk 36.2 1.2E+02 0.004 21.8 9.5 47 55-101 77-123 (129)
269 2p22_A Suppressor protein STP2 36.1 1.4E+02 0.0048 23.2 7.3 38 66-103 48-85 (174)
270 3tnu_A Keratin, type I cytoske 35.4 1.2E+02 0.0042 21.8 10.0 49 54-102 78-126 (131)
271 3kin_B Kinesin heavy chain; mo 35.3 74 0.0025 22.8 5.3 20 86-105 94-113 (117)
272 3viq_A SWI5-dependent recombin 35.1 78 0.0027 23.2 5.5 21 61-81 8-28 (122)
273 4dk0_A Putative MACA; alpha-ha 34.9 1.8E+02 0.0061 23.4 8.7 35 78-112 119-153 (369)
274 4dzo_A Mitotic spindle assembl 34.8 89 0.0031 22.8 5.7 19 54-72 5-23 (123)
275 2zvf_A Alanyl-tRNA synthetase; 34.5 56 0.0019 24.0 4.7 27 57-83 29-55 (171)
276 2oa5_A Hypothetical protein BQ 34.5 24 0.00081 25.9 2.5 22 77-98 11-32 (110)
277 3gp4_A Transcriptional regulat 33.7 1.3E+02 0.0045 21.8 6.6 32 83-114 97-128 (142)
278 1cxz_B Protein (PKN); protein- 33.7 1.2E+02 0.0041 21.1 6.2 30 80-109 55-84 (86)
279 4b4t_M 26S protease regulatory 32.9 47 0.0016 29.0 4.6 24 84-107 49-72 (434)
280 3mtu_A Tropomyosin alpha-1 cha 32.7 99 0.0034 20.5 5.3 29 54-82 17-45 (75)
281 3vp9_A General transcriptional 32.7 1.3E+02 0.0044 21.2 7.0 44 57-100 40-87 (92)
282 3bbp_D GRIP and coiled-coil do 32.4 59 0.002 22.0 4.0 17 84-100 46-62 (71)
283 3ghg_C Fibrinogen gamma chain; 32.3 2.5E+02 0.0086 24.6 9.1 47 71-117 88-134 (411)
284 4ati_A MITF, microphthalmia-as 32.1 1.4E+02 0.0047 21.4 6.3 18 84-101 94-111 (118)
285 1fxk_C Protein (prefoldin); ar 32.0 1.3E+02 0.0046 21.2 7.3 33 74-106 95-127 (133)
286 3jsv_C NF-kappa-B essential mo 31.9 1.4E+02 0.0046 21.2 8.9 10 88-97 40-49 (94)
287 2xv5_A Lamin-A/C; structural p 31.8 1.1E+02 0.0039 20.3 8.7 12 86-97 17-28 (74)
288 1gk4_A Vimentin; intermediate 31.6 1.2E+02 0.004 20.4 11.9 32 77-108 29-60 (84)
289 3mov_A Lamin-B1; LMNB1, B-type 31.3 1.3E+02 0.0045 20.9 8.9 45 56-100 40-84 (95)
290 2dq3_A Seryl-tRNA synthetase; 31.2 90 0.0031 27.0 6.1 25 91-115 71-95 (425)
291 3fx0_A NF-kappa-B essential mo 30.9 24 0.00083 25.2 1.9 17 50-66 35-51 (96)
292 1ez3_A Syntaxin-1A; three heli 30.8 1.3E+02 0.0045 20.7 7.9 12 94-105 94-105 (127)
293 2fic_A Bridging integrator 1; 30.6 1.9E+02 0.0063 22.3 10.2 24 75-101 187-210 (251)
294 2avr_X Adhesion A; antiparalle 30.5 1.6E+02 0.0055 21.6 9.2 18 80-97 70-87 (119)
295 1ykh_B RNA polymerase II holoe 30.5 1.5E+02 0.005 21.7 6.4 17 97-113 112-128 (132)
296 2xus_A Breast cancer metastasi 30.4 1E+02 0.0035 19.3 6.5 10 49-58 6-15 (49)
297 3mov_A Lamin-B1; LMNB1, B-type 29.5 1.4E+02 0.0049 20.7 10.2 29 77-105 40-68 (95)
298 3htk_B Structural maintenance 29.4 1.2E+02 0.004 19.7 10.2 61 55-115 6-66 (73)
299 2p4v_A Transcription elongatio 29.1 1.8E+02 0.0061 21.7 8.8 63 55-117 11-75 (158)
300 3q4f_C DNA repair protein XRCC 28.8 64 0.0022 25.6 4.2 18 55-72 163-180 (186)
301 4dk0_A Putative MACA; alpha-ha 28.6 2.3E+02 0.0078 22.8 8.9 36 81-116 115-150 (369)
302 1wlq_A Geminin; coiled-coil; 2 28.5 1.5E+02 0.0051 20.5 8.1 19 54-72 46-64 (83)
303 2gkw_A TNF receptor-associated 28.4 1.1E+02 0.0039 23.0 5.6 18 91-108 17-34 (192)
304 1deq_A Fibrinogen (alpha chain 27.9 1.8E+02 0.0061 25.5 7.3 45 53-97 113-157 (390)
305 4dci_A Uncharacterized protein 27.8 2E+02 0.0068 21.8 9.3 17 57-73 40-56 (150)
306 1yhn_B RILP, RAB interacting l 27.7 81 0.0028 20.9 3.9 27 83-109 5-31 (65)
307 2aze_A Transcription factor DP 27.6 1.4E+02 0.0046 23.0 5.8 21 61-81 6-26 (155)
308 2l5g_B Putative uncharacterize 27.6 1.1E+02 0.0037 18.7 5.1 30 57-86 6-35 (42)
309 3iyn_Q Protein IX, PIX, hexon- 27.5 61 0.0021 24.4 3.7 21 91-111 108-128 (140)
310 3pdy_A Plectin; cytoskeleton, 27.5 2E+02 0.0068 21.7 8.4 17 96-112 153-169 (210)
311 3m0a_A TNF receptor-associated 26.7 1.2E+02 0.0042 19.0 9.3 36 75-110 27-62 (66)
312 2e7s_A RAB guanine nucleotide 26.4 96 0.0033 23.3 4.7 36 80-115 95-130 (135)
313 1yke_B RNA polymerase II holoe 26.4 1.9E+02 0.0065 21.7 6.5 23 93-115 108-130 (151)
314 2pnv_A Small conductance calci 26.0 1.1E+02 0.0036 18.6 4.0 19 93-111 21-39 (43)
315 3uul_A Utrophin; spectrin repe 25.8 1.5E+02 0.005 19.6 10.2 15 93-107 83-97 (118)
316 1fmh_B General control protein 25.8 97 0.0033 17.5 4.6 20 83-102 10-29 (33)
317 3oa7_A Head morphogenesis prot 25.3 2E+02 0.0069 23.0 6.6 36 80-115 36-71 (206)
318 2wg5_A General control protein 25.3 86 0.003 22.1 4.1 24 85-108 11-34 (109)
319 3tul_A Cell invasion protein S 25.1 1.2E+02 0.0042 23.3 5.1 24 83-106 102-125 (158)
320 2b9c_A Striated-muscle alpha t 24.9 2.2E+02 0.0074 21.2 12.7 80 33-118 38-124 (147)
321 3uux_B Mitochondrial division 24.9 2.9E+02 0.0098 22.7 8.0 50 52-101 176-225 (242)
322 1d7m_A Cortexillin I; coiled-c 24.8 1.9E+02 0.0064 20.5 10.4 42 44-85 16-57 (101)
323 1fxk_A Prefoldin; archaeal pro 24.2 1.7E+02 0.0057 19.7 6.7 37 80-116 7-43 (107)
324 2k48_A Nucleoprotein; viral pr 24.2 2.1E+02 0.007 20.7 9.4 18 88-105 82-99 (107)
325 3lay_A Zinc resistance-associa 24.0 2.5E+02 0.0084 21.6 9.5 20 88-107 113-132 (175)
326 2fxo_A Myosin heavy chain, car 23.8 2E+02 0.007 20.6 14.1 40 75-114 63-102 (129)
327 1m1j_B Fibrinogen beta chain; 23.8 3.9E+02 0.013 23.7 14.0 27 88-114 168-194 (464)
328 3thf_A Protein shroom; coiled- 23.7 2.7E+02 0.0093 22.0 11.4 31 48-78 14-44 (190)
329 2wg5_A General control protein 23.6 64 0.0022 22.8 3.1 25 92-116 11-35 (109)
330 1lsh_B Lipovitellin (LV-2); vi 23.3 17 0.00059 30.8 0.0 8 17-24 32-39 (319)
331 1fzc_C Fibrin; blood coagulati 23.1 45 0.0015 28.3 2.6 19 91-109 28-46 (319)
332 3ljm_A Coil Ser L9C; de novo d 23.0 1.1E+02 0.0037 17.1 4.3 9 58-66 6-14 (31)
333 2aze_A Transcription factor DP 22.8 2E+02 0.0067 22.0 5.9 17 49-65 22-38 (155)
334 3gpv_A Transcriptional regulat 22.6 1.9E+02 0.0064 21.0 5.7 41 74-114 95-135 (148)
335 1ytz_T Troponin T; muscle, THI 22.2 2.2E+02 0.0075 20.3 7.0 44 64-107 46-89 (107)
336 3swk_A Vimentin; cytoskeleton, 21.8 1.9E+02 0.0066 19.5 9.7 17 91-107 66-82 (86)
337 3a7o_A Autophagy protein 16; c 21.8 1.9E+02 0.0066 19.5 7.9 33 75-107 40-72 (75)
338 1grj_A GREA protein; transcrip 21.5 2.5E+02 0.0086 20.7 9.4 62 55-116 11-74 (158)
339 4fla_A Regulation of nuclear P 21.5 2.6E+02 0.0089 20.9 11.4 36 62-97 81-116 (152)
340 3uun_A Dystrophin; triple heli 21.3 1.8E+02 0.0062 19.0 10.2 18 92-109 82-99 (119)
341 2gkw_A TNF receptor-associated 21.3 1.8E+02 0.0063 21.8 5.6 13 96-108 15-27 (192)
342 1gmj_A ATPase inhibitor; coile 21.3 2.1E+02 0.0072 19.8 9.3 10 39-48 23-32 (84)
343 3tq7_B Microtubule-associated 21.2 2E+02 0.007 19.6 5.6 31 53-83 8-38 (82)
344 2cly_A ATP synthase B chain, m 21.2 3.1E+02 0.011 21.8 8.3 47 51-97 113-159 (214)
345 3rrk_A V-type ATPase 116 kDa s 21.1 2.5E+02 0.0086 22.8 6.8 40 62-101 94-136 (357)
346 2xu6_A MDV1 coiled coil; prote 20.9 2E+02 0.0068 19.4 6.0 46 54-106 22-67 (72)
347 1qvr_A CLPB protein; coiled co 20.8 2.8E+02 0.0095 25.6 7.6 22 51-72 399-420 (854)
348 3p7i_A PHND, subunit of alkylp 20.3 1.2E+02 0.0043 24.5 4.7 41 33-73 271-311 (321)
349 4b4t_J 26S protease regulatory 20.3 1.3E+02 0.0044 26.1 5.0 22 86-107 44-65 (405)
350 3hh0_A Transcriptional regulat 20.2 2.5E+02 0.0087 20.3 6.4 31 86-116 85-115 (146)
351 3a2a_A Voltage-gated hydrogen 20.1 1.9E+02 0.0064 18.7 6.5 30 82-111 19-48 (58)
352 3mud_A DNA repair protein XRCC 20.0 2.6E+02 0.0089 21.8 6.2 30 46-75 135-164 (175)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.58 E-value=2.2e-15 Score=99.81 Aligned_cols=52 Identities=27% Similarity=0.479 Sum_probs=46.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041765 32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHY 83 (163)
Q Consensus 32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~ 83 (163)
|+.+|+++||+||++||+||++|+++|+.+|..|+.||..|..++..|++.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999988888877766543
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.44 E-value=5e-13 Score=90.35 Aligned_cols=48 Identities=29% Similarity=0.459 Sum_probs=42.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 31 QRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 31 eRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
|||++|+.+||+||++||.||++++.+|+.+|..|+.+|..|..++..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999988888776665543
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.34 E-value=5.3e-12 Score=84.55 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=42.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
||.+|+.+||+||++||.||++++++|+.+|..|+.+|..|..++..
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~ 47 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTL 47 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999888887766654
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.34 E-value=2.2e-12 Score=87.51 Aligned_cols=47 Identities=30% Similarity=0.401 Sum_probs=39.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041765 36 RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQH 82 (163)
Q Consensus 36 R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~ 82 (163)
+..+||+||+|||.||++|+++|+.+|..|+.+|..|..++..|.++
T Consensus 13 KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 13 KRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33559999999999999999999999999998888877766655544
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.27 E-value=1.4e-11 Score=82.79 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=41.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765 33 KRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITT 80 (163)
Q Consensus 33 k~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~ 80 (163)
+.+|+.+||+||++||.||++++++|+.+|..|+.+|..|..++..|.
T Consensus 2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999888777665433
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.26 E-value=7e-12 Score=86.82 Aligned_cols=61 Identities=33% Similarity=0.412 Sum_probs=49.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
...||+..||.|+|.+|.||++|+.+|+.+|..|+.++..| ..||..|+.++..|..++..
T Consensus 8 ~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l--------------~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 8 PSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSST--------------TLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHTTHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999888764 45666666666666665543
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.14 E-value=2.1e-10 Score=77.53 Aligned_cols=46 Identities=26% Similarity=0.465 Sum_probs=36.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041765 32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVN 77 (163)
Q Consensus 32 Rk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~ 77 (163)
|+.+++.+||.||+|||.||+++.++|+.++..|+.+|..|..++.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999999999999999998888877666554
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.81 E-value=3.4e-08 Score=70.84 Aligned_cols=62 Identities=21% Similarity=0.335 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
|++...|..+|.+||++||.++++...+++.++..|+.||.. |++++..|..++..|..
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~---------------------Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENER---------------------LQKKVEQLSRELSTLRN 71 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence 455666778999999999999999999999888776655554 66666666666666666
Q ss_pred HHH
Q 041765 110 ILN 112 (163)
Q Consensus 110 il~ 112 (163)
+|.
T Consensus 72 ll~ 74 (87)
T 1hjb_A 72 LFK 74 (87)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.75 E-value=5.8e-08 Score=68.32 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041765 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVN 77 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~ 77 (163)
|+....|..+|.+||+|||.++++...+++.++..|+.||..|..+|.
T Consensus 13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566678999999999999999999999999887777766555543
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.56 E-value=1.6e-09 Score=80.48 Aligned_cols=69 Identities=23% Similarity=0.411 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
...-|.+||.++||.+|+.||.||.+..++|+.++..|+.+. +.|..||..|+.++..|+.++..|
T Consensus 33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~--------------e~L~~En~~l~~E~~~lk~k~e~L 98 (107)
T 3a5t_A 33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEV--------------EKLASENASMKLELDALRSKYEAL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTT--------------TTTTSTTSHHHHTTTSSSSCC---
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688999999999999999999999999998877665544 345566666776666666666555
Q ss_pred HHH
Q 041765 108 NDI 110 (163)
Q Consensus 108 ~~i 110 (163)
..+
T Consensus 99 ~~~ 101 (107)
T 3a5t_A 99 QNF 101 (107)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.22 E-value=1.3e-05 Score=57.75 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
...-|.+||.++||..|+-||.||.....+||.++..|..+-..| ..||..+..++..+..++..
T Consensus 23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L--------------~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQL--------------KQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999999998887776665443 44555555555555555543
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.00 E-value=0.0023 Score=39.86 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
|+|+.+||.++..|+..|.+|..++ ..|..||.-||+-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEerv-------stLq~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERL-------STLQNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHh
Confidence 5799999999999988888776655 46778898888754
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.82 E-value=0.014 Score=41.06 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
.-|.-++..|+.+|..|..++..+......+..||..|+.+...++.||..|-.-
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455577777777777777777777777779999999999999999998877544
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.74 E-value=0.00082 Score=48.34 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 041765 28 AMDQRKRKRMQSNRESARRSRMRKQKHLDDLI 59 (163)
Q Consensus 28 ~~deRk~rR~lsNReSARRSR~RKq~~l~eLe 59 (163)
....|..||..+||.+|++||.||....+.|+
T Consensus 58 l~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 58 RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 44567889999999999999999999888775
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.16 E-value=0.069 Score=40.59 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
+.+...+.|+.++..+..|...|+.++..+..++..+..++..|+.++.+|+.++..|..=+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888888888889988888888888888888888888888888888886544
No 16
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.12 E-value=0.028 Score=36.43 Aligned_cols=47 Identities=28% Similarity=0.471 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
.+.|-.||+.|+.||..|+.++..-..++..|+.|-.-+++=+..|+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 57899999999999999999999999999999888887777665554
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.81 E-value=0.15 Score=35.88 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRA-------QLLELTQRLDSLNDILN 112 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lra-------ql~eL~~rl~~l~~il~ 112 (163)
-++.|+.+|..+=....-|..++..|+++...|..+|..++. +...|++......+-|.
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888777777777777777777777777777444 55555555555444443
No 18
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=95.30 E-value=0.067 Score=35.43 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=34.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 73 LTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 73 ~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
..++..+..++..|+.+|..|+.++..|+.++..|..+|.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677888889999999999999999999999998874
No 19
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=95.03 E-value=0.089 Score=34.33 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 74 TSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
..+..|...+..++.+|..|+.++..|+..+..|..+|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667788888999999999999999999999998876
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=94.98 E-value=0.11 Score=34.29 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=35.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 74 TSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
..+..|..++..|..+|..|+.++..|+..+..|..+|..
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467788888999999999999999999999999998853
No 21
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=94.76 E-value=0.094 Score=34.99 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRA 95 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lra 95 (163)
+..-|++|.+|-+-|..|..++..++..+..|.+||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 45567889999999999999999999999999999999984
No 22
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=94.53 E-value=0.26 Score=35.94 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILT-------SVNITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~-------~i~~l~~~~~~l~~EN~~Lraql~ 98 (163)
-+|+..++.++.||..|+. ++..|...+..|..||..|+.+-.
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888776 444444444444445544444433
No 23
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=94.53 E-value=0.062 Score=37.37 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=30.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 74 TSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
.+...+...+..|+.||..|+.++..|..++..|..+|
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677788889999999999999999888888766
No 24
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=94.30 E-value=0.38 Score=34.95 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNI---------------------ESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l---------------------~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
.+..|..+|+.|+.||..|+.++..|.-++... .......+..+..|+..+..|...+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777765554430 11122345666666666666666666
Q ss_pred HHhc
Q 041765 113 FINT 116 (163)
Q Consensus 113 ~~~~ 116 (163)
.++.
T Consensus 93 ~lEe 96 (100)
T 1go4_E 93 AMER 96 (100)
T ss_dssp TCC-
T ss_pred HHhc
Confidence 6654
No 25
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=94.21 E-value=0.24 Score=30.88 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~ 98 (163)
.+..|+.+|..|+.||..|..+.-.-..-+.-++.|...||..++
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 356889999999999999887765545555566666666665553
No 26
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=94.09 E-value=0.35 Score=31.79 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=24.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 36 RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQ 71 (163)
Q Consensus 36 R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~ 71 (163)
...+||.++|++|.|=++.++....-...-..||..
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~r 40 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDR 40 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Confidence 347899999999999888776665443333333333
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.74 E-value=0.94 Score=34.25 Aligned_cols=55 Identities=7% Similarity=0.074 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 60 AQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 60 ~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.++..|+.+...+..++..+.+++..+..++..++.++.+|+.++..|..-+.-+
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555666666666665555554444
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.58 E-value=0.79 Score=40.36 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
+..++.+.+.+..+++.+..+++...+++..++.|...|+.++.+.++++.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 334444555555555566666655555566555555555554444444443
No 29
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=93.37 E-value=0.11 Score=34.09 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 73 LTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 73 ~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
...+..|...+..|+.+|..|+.++..|...+..|..+|.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888889999999999999999999988877663
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.21 E-value=1.3 Score=43.38 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVN----ITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~----~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
.++.+++|+.++..+.+|...|..++. .+++++..|+.||..|++|+.+|...+...++
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433 23455566777777777777777755555543
No 31
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=92.16 E-value=0.3 Score=33.17 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
..+.+|+.....|..||..|...+..
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777778888777666543
No 32
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=92.13 E-value=0.84 Score=29.04 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 59 IAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 59 e~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
+.++..|+.-|..|..++..++..+..++.|+..|++=+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 567888899999999999999888888888888776543
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.08 E-value=1.4 Score=31.83 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
.+..|+.++.....+...|...+..-.......+.++..+..++.+|+..
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555444455555555555555555555543
No 34
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.05 E-value=1.3 Score=35.34 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
|+.++..|+..+..|...|..|.+....++.....+..-+..+..++...-+-..+
T Consensus 93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~al 148 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAF 148 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333334444444444433333333
No 35
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=91.92 E-value=0.24 Score=28.22 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041765 82 HYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 82 ~~~~l~~EN~~Lraql~eL~~rl 104 (163)
-+..+++||..|++++++|-.++
T Consensus 7 llasleaenkqlkakveellakv 29 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888999999998886654
No 36
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=91.90 E-value=1 Score=31.37 Aligned_cols=44 Identities=16% Similarity=0.364 Sum_probs=33.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 67 KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.||..|+.+|..+...+..+..||..|+ +|...++.|-++|..+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~----el~~~~~~laevl~~l 77 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 5788999999888888888888888774 5556666666666544
No 37
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=91.63 E-value=0.012 Score=42.25 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 041765 30 DQRKRKRMQSNRESARRSRMRKQK 53 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR~RKq~ 53 (163)
.-|..||.-+||++|+++|+||..
T Consensus 64 lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 64 LVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 457788999999999999999853
No 38
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=91.49 E-value=1.8 Score=30.17 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILT 74 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~ 74 (163)
|..++..|+.|...|+-
T Consensus 25 Lq~Ql~~Lq~Ev~~LRG 41 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRG 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344433333333333
No 39
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=91.21 E-value=0.71 Score=30.27 Aligned_cols=39 Identities=21% Similarity=0.130 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 59 IAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 59 e~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
+.++..|+..|-.|..+++.|+.++...+.|+..|.+=+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999998888888888888887776543
No 40
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=91.05 E-value=1.3 Score=28.34 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 041765 56 DDLIAQVDQLRKENNQILTSV 76 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i 76 (163)
.+|..++..|...|..|...+
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L 32 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETL 32 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544444444333
No 41
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=90.76 E-value=0.85 Score=31.39 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
|+.++..|+..-..+...|..|...+..-..+...|+.++..|..++..+.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444444555555555555555666666666666655544
No 42
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=90.71 E-value=1.9 Score=29.45 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
.++..++..++.+|..|..++..+++.+..-..+-..++.++..+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888889999999888888888877777777776665543
No 43
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=90.71 E-value=2.8 Score=29.02 Aligned_cols=61 Identities=11% Similarity=0.232 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
=++.+..-.+++..|+.-.+.|..--..+...+..+..|-..|...+..|+.+...|.+++
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777888777777777777777788888888888888888888887776543
No 44
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=90.53 E-value=2.6 Score=29.10 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNIT------TQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l------~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
-|..++.|+.++..|+.+...|...+..- -..+..+..+...+..++.++-.|...|..+-
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~ 86 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35568999999999999999998888642 24567788888888888888888887776543
No 45
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=90.48 E-value=0.35 Score=28.51 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
+..||.+|+.|-.+|..|..++..
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~R 25 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVAR 25 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHH
Confidence 456777777666666665554443
No 46
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=90.43 E-value=0.58 Score=27.71 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVN 77 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~ 77 (163)
++..||.+|..|-.+|..|..++.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHH
Confidence 456677777766666655544443
No 47
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=89.91 E-value=2.2 Score=31.83 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
|+.+..+-++..++|..+|..|.+++....+|-..||.+...|..|+
T Consensus 62 L~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 62 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 33333333334445555555555555555555555555555555444
No 48
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=89.85 E-value=0.48 Score=31.31 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 73 LTSVNITTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 73 ~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
...+..|..++..|..+|..|+.++..|+..|.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667778888889999999999998887664
No 49
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.69 E-value=4.4 Score=31.37 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 60 AQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 60 ~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
.-+..|+.|...|.-+++.+..+...++.||..|-.+.
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666665554444
No 50
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=89.68 E-value=1.9 Score=34.58 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
+++++.-..-|..|..||..|..++.....++..|..+-..|++++..+..++..-.+
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e 69 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAE 69 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 3445555556777788887777777776666777777666676666555544444433
No 51
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=89.65 E-value=0.48 Score=28.37 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNIT 79 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l 79 (163)
++..|+.+|..|-.+|..|..++..|
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL 27 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARL 27 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45677777777776666655554433
No 52
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=89.59 E-value=0.84 Score=27.32 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNIT 79 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l 79 (163)
++..|+.+|+.|-.+|..|..++..|
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46677777777766666655554433
No 53
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=89.51 E-value=1.2 Score=31.06 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
+++..++..++.+|..|..++..++..+..-..+-..++.++..+.
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888887777766666666665443
No 54
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=89.43 E-value=1.5 Score=31.80 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 80 TQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 80 ~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
...+.....+-..|++++..|+.++..|.+
T Consensus 67 ~~a~~~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 67 SVARQRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444556667777888888888887776543
No 55
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=89.36 E-value=3.9 Score=29.27 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=54.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 38 QSNRESARRSRMRKQKHLDDLIAQVDQLR---KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 38 lsNReSARRSR~RKq~~l~eLe~qv~~L~---~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
..|-.+|-..=..|+..+++|...+.+++ ..+..|..++.....-+..-.+.-..+-.+..+|..+|..|..-+..+
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556677777779999999999988888 455567777777777777666666666666666666666666555444
Q ss_pred h
Q 041765 115 N 115 (163)
Q Consensus 115 ~ 115 (163)
+
T Consensus 88 ~ 88 (94)
T 3jsv_C 88 K 88 (94)
T ss_dssp -
T ss_pred H
Confidence 4
No 56
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=89.03 E-value=0.96 Score=29.02 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 041765 61 QVDQLRKENNQIL 73 (163)
Q Consensus 61 qv~~L~~EN~~L~ 73 (163)
.|..|+.||..|+
T Consensus 20 d~eaLk~E~~eLk 32 (53)
T 2yy0_A 20 EIELLRLELAEMK 32 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444433
No 57
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=88.93 E-value=4.5 Score=28.35 Aligned_cols=45 Identities=16% Similarity=0.363 Sum_probs=33.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 67 KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
.||.+|...+..+...+..+..+|..|+ +|...++.|-++|..+.
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~~L~ 82 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 5788888888888888888888887765 46667777777776553
No 58
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=88.35 E-value=0.89 Score=27.29 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=24.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 041765 67 KENNQILTSVNITTQHYMNIESENSVLR 94 (163)
Q Consensus 67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lr 94 (163)
.||.+|...|..-.+++..|..||..|.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5899999999988888999999988875
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.13 E-value=3.5 Score=30.77 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 81 QHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.++..|+.|+..|..++.+...++..|..-...+
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 3456666666666666666666666665554433
No 60
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=87.92 E-value=2.8 Score=26.73 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 60 AQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 60 ~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~ 98 (163)
.++..|+.++..|..++..|..-+.....+...|++++.
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444444433333333333333333
No 61
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.89 E-value=4.7 Score=27.32 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
..++.++.++...+.....+...+..++.++..++.+-.....++.....+|
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555545555555555554444444444444444444443
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.70 E-value=6 Score=34.70 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
+.++..+..++...+.+..++....+.......+-..|+.++.++..++....+.+..
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 562 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAE 562 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHH
Confidence 3344444444444444444444444444444455555555555555555555554443
No 63
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.66 E-value=9.8 Score=37.19 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQH 82 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~ 82 (163)
..|+.+++.|+.+...+..+...+++.
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 64
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=87.64 E-value=1.2 Score=26.31 Aligned_cols=24 Identities=0% Similarity=0.071 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVN 77 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~ 77 (163)
++..||.+|+.|-.+|..|..++.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHH
Confidence 456677776666555555444443
No 65
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.48 E-value=5.1 Score=39.17 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 81 QHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
.++..+..+...|..++.++..++..
T Consensus 913 ~~l~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 913 EMRVRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443333
No 66
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.19 E-value=9.3 Score=29.94 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
+..|..|...++.....+......|.+-|.
T Consensus 99 i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~ 128 (168)
T 3o0z_A 99 ITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 67
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=87.19 E-value=2.9 Score=25.81 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 77 NITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 77 ~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
..|..+...++.-|..|..++..|+.+-+.|..|+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34445555566666666666666666666666555
No 68
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=87.12 E-value=4.6 Score=32.69 Aligned_cols=45 Identities=16% Similarity=0.372 Sum_probs=32.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 67 KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
.||..|+.+|..+.+.+..+..||..|+. |...++.|-++|..+.
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLke----Lae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAE----VAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 58888888888888888888888777664 4455666666666654
No 69
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=86.95 E-value=0.7 Score=29.71 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 74 TSVNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
..+..|..++..|+.||..|+.++..|+..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677778889999999999998887643
No 70
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=86.11 E-value=6.8 Score=27.32 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 40 NRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 40 NReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
|-.||=.+=.+-|+ .+..++...+..|..+.+++.....+...|..|-..|+.++.+|
T Consensus 14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566655555554 45556677777888877777766666666655555555555554
No 71
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=85.63 E-value=1.8 Score=25.40 Aligned_cols=22 Identities=0% Similarity=0.169 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 041765 55 LDDLIAQVDQLRKENNQILTSV 76 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i 76 (163)
+..||.+|+.|-.+|..|..++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV 23 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXL 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHH
Confidence 4556666666555555544443
No 72
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.35 E-value=7.9 Score=27.39 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
-..+.+.++.++..++..+.++-..+..|+.++..++.+-..+..++.+....|
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666666555555555544433
No 73
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=85.34 E-value=9.1 Score=28.09 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=42.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 39 SNRESARRSRMRKQKHLDDLIAQVDQLRK---ENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 39 sNReSARRSR~RKq~~l~eLe~qv~~L~~---EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
.|=.+|-..=..|+..+++|..++.+++. ...-|..++......+..-.+.-..+-.+..+|..+|..|..
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 34455666666688888888888887776 455566666666555555444444444455555554444443
No 74
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=85.23 E-value=2.1 Score=25.30 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 75 SVNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 75 ~i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
+.+.|..+++.|..+|..|..++..|+.-|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345667777888888888888888776544
No 75
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=85.14 E-value=2.1 Score=27.37 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 81 QHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
..+..|..||..|++++.+|..++..+..-|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666665543
No 76
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=85.03 E-value=2 Score=25.20 Aligned_cols=25 Identities=4% Similarity=0.093 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNIT 79 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l 79 (163)
+..||.+|+.|-.+|..|..++..+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5567777777766666655554433
No 77
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=85.03 E-value=1.6 Score=25.79 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
++..|+.+|+.|-.+|..|..++..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~R 26 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVAR 26 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHH
Confidence 4566777777766666665544433
No 78
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.94 E-value=8 Score=27.11 Aligned_cols=46 Identities=26% Similarity=0.237 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 041765 59 IAQVDQLRKENNQILTSVNITTQHYM-----NIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 59 e~qv~~L~~EN~~L~~~i~~l~~~~~-----~l~~EN~~Lraql~eL~~rl 104 (163)
-.+|..|+.+|..|..++..+..+.. ..+.+-..||.++..+...-
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek 72 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDK 72 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666555443321 13444455555554444333
No 79
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=84.34 E-value=2 Score=23.91 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041765 85 NIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 85 ~l~~EN~~Lraql~eL~~rl~~l 107 (163)
.|+-||..|.+.+..|.+++.+|
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 35556666666666666666655
No 80
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=84.23 E-value=3.7 Score=28.14 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
.|+..-..|..++.....-+..|...-..-..++..|+.+|..|.+-+..+.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444555444444444444444445555555555555555544444
No 81
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=84.08 E-value=0.65 Score=32.15 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=11.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 041765 72 ILTSVNITTQHYMNIESENSVLRA 95 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lra 95 (163)
|+.+|..|..+...|+.||..||.
T Consensus 20 LKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 20 LKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555553
No 82
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.99 E-value=7.8 Score=26.20 Aligned_cols=22 Identities=9% Similarity=0.139 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041765 85 NIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 85 ~l~~EN~~Lraql~eL~~rl~~ 106 (163)
.|..-+..|..++.....+|..
T Consensus 45 ~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 45 ALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 83
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=83.97 E-value=1.6 Score=25.83 Aligned_cols=24 Identities=4% Similarity=0.303 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVN 77 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~ 77 (163)
++..||.+|+.|-.+|..|..++.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~ 25 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELA 25 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHH
Confidence 455667776666555555444443
No 84
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=83.95 E-value=1.3 Score=26.01 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 77 NITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 77 ~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
+.|..+++.|..+|..|..++..|+.-|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566777888888888888888776543
No 85
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=83.82 E-value=8.6 Score=27.87 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
-..+.+|+.+|..|+.||+.|+.+...
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999887766543
No 86
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=83.63 E-value=2.4 Score=24.36 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNIT 79 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l 79 (163)
+..|+++|.+.+.||-+|..++..+
T Consensus 3 vaqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456666666666665555544433
No 87
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=83.60 E-value=1.8 Score=36.02 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 82 HYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 82 ~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
++..+...|..|++.+.+++.++..|.+-++.+.+
T Consensus 62 ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 62 RIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344444555555555555555555555555544
No 88
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=83.55 E-value=1.7 Score=25.71 Aligned_cols=25 Identities=4% Similarity=0.094 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
++..||.+|+.|-.+|..|..++..
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~R 26 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELAR 26 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHH
Confidence 3456777777666666665544433
No 89
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.27 E-value=11 Score=27.53 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQ-----------HYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~-----------~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
.|+.++..++..+..|...+..+.. .+..++.+...+|+++...-...+
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333 333455555555555544433333
No 90
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=82.69 E-value=3.8 Score=28.73 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=19.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 67 KENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
.||..|...|..+.+.+..+..+|..|+.=+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777787777766666666666666555433
No 91
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=82.68 E-value=15 Score=28.39 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
.+|+..+..-.+.+..|..++..+.-++..++.....|.++-..|
T Consensus 85 ~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 85 RRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 92
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=82.36 E-value=12 Score=27.15 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHh
Q 041765 28 AMDQRKRKRMQSN 40 (163)
Q Consensus 28 ~~deRk~rR~lsN 40 (163)
..++|-+|=|++|
T Consensus 6 EvEEKyrKAMVsn 18 (103)
T 4h22_A 6 EVEEKYKKAMVSN 18 (103)
T ss_dssp --CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567888889887
No 93
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=82.13 E-value=12 Score=27.10 Aligned_cols=17 Identities=6% Similarity=0.048 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041765 93 LRAQLLELTQRLDSLND 109 (163)
Q Consensus 93 Lraql~eL~~rl~~l~~ 109 (163)
++-.+..|+..+..|..
T Consensus 63 ~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 63 EKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.99 E-value=24 Score=30.28 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=16.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 67 KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
.+......+++.+.++...++.+...+..++.+..++++.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 33333333333333333334444444444444444444433
No 95
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.89 E-value=13 Score=27.13 Aligned_cols=50 Identities=14% Similarity=0.271 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQ-----------HYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~-----------~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
..|+.++..++..+..|...+..+.. .+..++.+...+|+++...-...+
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444433 334455555555555554433333
No 96
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.86 E-value=18 Score=28.75 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
.+..|+.+...|......+..++..|+..|..|.........-+..+..-++
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln 140 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 3555555555555555555666666666666555555555444444444433
No 97
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.54 E-value=16 Score=29.34 Aligned_cols=32 Identities=9% Similarity=0.019 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQLRKENNQILTSVNITT 80 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~ 80 (163)
...+..+++++.++..++.+-..+..++...+
T Consensus 49 ~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 49 LNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 98
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=81.47 E-value=8.1 Score=26.43 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 76 VNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 76 i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
...|.-.+..+.-||..|..++..|++
T Consensus 48 ~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 48 TERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 334455566778889998888877764
No 99
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.11 E-value=7 Score=33.94 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVN 77 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~ 77 (163)
+.|+.++..|+.+..+|...+.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~ 27 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIK 27 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 100
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=81.08 E-value=2.5 Score=28.69 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 84 MNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 84 ~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
..|..++..|..++.+|..+...|..-|
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 101
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=80.78 E-value=4.6 Score=24.07 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 76 VNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
++.|..+.+.|..+|..|..++..|+.-+..
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4455666677777777787777777665543
No 102
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=80.73 E-value=5.1 Score=25.76 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 76 VNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
.+.|-++.+.|..||..||.++..-...|..|+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 345667778888899999888776665555544
No 103
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.70 E-value=12 Score=25.90 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
....+|+.+...|..+...|..++..+...+..|......|..++.+|..||.
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34457788888888888888777888888888888888888888888888763
No 104
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=80.62 E-value=2.9 Score=24.73 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041765 78 ITTQHYMNIESENSVLRAQLLE 99 (163)
Q Consensus 78 ~l~~~~~~l~~EN~~Lraql~e 99 (163)
..++.+..+..+|..|.+|+..
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHHh
Confidence 3333444455555556655543
No 105
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.45 E-value=5 Score=27.40 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 041765 55 LDDLIAQ 61 (163)
Q Consensus 55 l~eLe~q 61 (163)
+++|+.+
T Consensus 42 I~eLEk~ 48 (72)
T 3nmd_A 42 IDELELE 48 (72)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 106
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=80.41 E-value=4.2 Score=23.97 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 76 VNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
.+.+..+++.|..+|..|..++..|+.-|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566777788888888888888776544
No 107
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.39 E-value=7.1 Score=33.91 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIE 87 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~ 87 (163)
..+..|+.++..|+.+...+..++..+.+++...+
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433333
No 108
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=80.33 E-value=4.3 Score=23.79 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 76 VNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
.+.+..+++.|..+|..|..++..|+.-|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566677788888888888888776544
No 109
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=80.20 E-value=14 Score=33.15 Aligned_cols=56 Identities=20% Similarity=0.314 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQ-----------HYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~-----------~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
+..++..|+++.+.+.++|..+.. ....+..+-..|+.++.+|..++..+.+-+..
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554432 23345555566666666666666665555543
No 110
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=80.12 E-value=5.7 Score=31.77 Aligned_cols=62 Identities=10% Similarity=0.201 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
-+..|..++..|..++.....++..|++++..++..-..+..++..-..-+.-..+++..+.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LT 82 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLC 82 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHcc
Confidence 45566677777777666666667777777777766666666666655555655666666553
No 111
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=80.02 E-value=1.7 Score=27.98 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 80 TQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 80 ~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
...+..+..||..|+.++..|..+
T Consensus 33 ~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 33 RKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666666666666554
No 112
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=79.84 E-value=13 Score=26.03 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
-..+.+.++.++..++..+..+...+..++.++..++.+-..+..++.....
T Consensus 21 a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~ 72 (101)
T 3u59_A 21 AIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666665555555555554443
No 113
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=79.84 E-value=15 Score=26.64 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 041765 93 LRAQLLELTQRLDSL 107 (163)
Q Consensus 93 Lraql~eL~~rl~~l 107 (163)
|..++..|+..|..|
T Consensus 88 LE~~iesL~eEl~FL 102 (119)
T 3ol1_A 88 LERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344443333
No 114
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=79.81 E-value=9.7 Score=24.46 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
.++...+..|+.+-..++..+....+.|..|..-.-.|-.+++..+.-|
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566667777777777777777777778888888888888887765544
No 115
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=79.74 E-value=14 Score=26.13 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 041765 95 AQLLELTQRLDSL 107 (163)
Q Consensus 95 aql~eL~~rl~~l 107 (163)
+++..|..|++.|
T Consensus 86 ~ev~~L~Rriqll 98 (101)
T 3u1c_A 86 SEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555444
No 116
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=79.54 E-value=2.9 Score=34.82 Aligned_cols=40 Identities=30% Similarity=0.448 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
+.+|+.++..|...|..| ..+...++.++..|+.++..|.
T Consensus 56 l~eL~~ql~~L~arNe~L--------------~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKL--------------METLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555554443 3344445555555555555554
No 117
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=79.52 E-value=3.1 Score=23.60 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITT 80 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~ 80 (163)
+.|..-+..|+.||.+|+.++..+-
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888899999888876554
No 118
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=79.37 E-value=20 Score=28.71 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVL 93 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~L 93 (163)
.|+.++..|+.+|..|...++.+..+++.+..+...+
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~ 172 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEAL 172 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555444444
No 119
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=79.15 E-value=16 Score=26.66 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
+..|+.++..|+..|..|...+..|.+....|+.....--.=+..+..++...-+--.+
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnal 95 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAF 95 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666554443333
No 120
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=79.03 E-value=6.5 Score=33.60 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 81 QHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
.++..|+.....+..+|.+|..+|..|..
T Consensus 26 ~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445555444444443
No 121
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=78.89 E-value=4.4 Score=27.36 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 78 ITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 78 ~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
.|..+...+..+...|+.+...|..+|..
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555543
No 122
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=78.44 E-value=5.7 Score=28.12 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
...|+.++..|..++..|...+..+..-++.+
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777766666665555444
No 123
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=78.14 E-value=7.7 Score=33.91 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 65 LRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 65 L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
|+.|...|..++..+.+++..+..|+..+++++.+.....+.
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~ 49 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 49 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444445555555555555444433333
No 124
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=77.96 E-value=9.2 Score=23.53 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 78 ITTQHYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 78 ~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
.|.+++..+..|-..-++++.+|+.++..|.+..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556677788888888888999999988887754
No 125
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=77.57 E-value=1.6 Score=24.24 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 041765 63 DQLRKENNQILTSVNITTQHYMNI 86 (163)
Q Consensus 63 ~~L~~EN~~L~~~i~~l~~~~~~l 86 (163)
..|+.||..|..++..+++++..|
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 457788888888887777766554
No 126
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=77.54 E-value=15 Score=25.21 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
++||.+|..|+.--..|..++..|..+ ..+-...|++++..|..++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaE---y~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAE---YESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence 356677766666655555555444333 333445677777777776665
No 127
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.53 E-value=11 Score=25.63 Aligned_cols=12 Identities=17% Similarity=0.122 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 041765 93 LRAQLLELTQRL 104 (163)
Q Consensus 93 Lraql~eL~~rl 104 (163)
..+++.+|+.+|
T Consensus 52 kd~eI~~LqseL 63 (72)
T 3nmd_A 52 KDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 128
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=77.49 E-value=6 Score=26.98 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 80 TQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 80 ~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
.+....+..|+..|+.+...|..+|.
T Consensus 53 ~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 53 EDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444455555555555443
No 129
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=77.17 E-value=12 Score=26.16 Aligned_cols=54 Identities=17% Similarity=0.320 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041765 30 DQRKRKRMQSNRESARRSR---MRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHY 83 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR---~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~ 83 (163)
-+||.|--+.=|-|-...| .--+..+++|+.+-..|+.+...|..++..|...+
T Consensus 17 ~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 17 KIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333333333 34567789999999999999888766665554443
No 130
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=76.67 E-value=6.8 Score=26.63 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=38.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 36 RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 36 R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
|+...-.+-|+-|.+=...+.+|..-|-.... ...-..-+..+.+.+..|..++..|..+...|+.+++...
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~-k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEA-KLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444556666666666777777766643200 0000112233345556666777777777777776666544
No 131
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.64 E-value=27 Score=27.94 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQIL 73 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~ 73 (163)
..|..++..++.+...+.
T Consensus 93 ~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444443333333
No 132
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.59 E-value=13 Score=28.68 Aligned_cols=39 Identities=28% Similarity=0.195 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 78 ITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 78 ~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
......+.++..|..|+.++.+-...|..++..|..+..
T Consensus 105 ~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 105 DARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888999999999999999999999988875
No 133
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.28 E-value=17 Score=25.42 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 041765 102 QRLDSLNDILNFI 114 (163)
Q Consensus 102 ~rl~~l~~il~~~ 114 (163)
..+.+|+.-|+.+
T Consensus 86 ~evasLnRriqll 98 (101)
T 3u59_A 86 AEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 134
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=76.25 E-value=4 Score=27.89 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041765 85 NIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 85 ~l~~EN~~Lraql~eL~~rl~~ 106 (163)
.|..++..|..++..|+.+...
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~ 72 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRH 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 135
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=76.04 E-value=37 Score=30.39 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=56.7
Q ss_pred HhHHHHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 041765 39 SNRESAR-RSRMRKQ-------KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIES-----------ENSVLRAQLLE 99 (163)
Q Consensus 39 sNReSAR-RSR~RKq-------~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~-----------EN~~Lraql~e 99 (163)
.|.+.-+ ..+.|+- ..+-.|..+...++.+-+.|+.+.+.+..++..+.. +-..|++++.+
T Consensus 48 ~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (501)
T 1wle_A 48 AYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGRE 127 (501)
T ss_dssp HSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHH
Confidence 4666643 3333432 445566777788888888888888888888876553 34588999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 041765 100 LTQRLDSLNDILNFINTS 117 (163)
Q Consensus 100 L~~rl~~l~~il~~~~~~ 117 (163)
|.+++..|...+..++..
T Consensus 128 l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 128 IRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998888877543
No 136
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=75.97 E-value=17 Score=25.10 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNI-------TTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~-------l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
.++-.+|..|-.||.+|...-+. |..++..|..|+..|+.++..++.-...++.-+.
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~ 68 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNR 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888887765433 4556666777777777777666655555554443
No 137
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=75.64 E-value=6.5 Score=23.43 Aligned_cols=30 Identities=20% Similarity=0.123 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 77 NITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 77 ~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
+.|..+.+.|..+|..|..++..|+.-|.+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 345555666777777777777766655543
No 138
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.42 E-value=34 Score=29.26 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
+++.|-..+........++...++.||..|+..+.++...+...+..+..+
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 344444445566666777778888888888888888888887777766654
No 139
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.03 E-value=16 Score=39.85 Aligned_cols=67 Identities=10% Similarity=0.154 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 42 ESARRSRMRKQKHLDDLIAQVDQLRKENNQILTS--------------VNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 42 eSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~--------------i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
..|+..=..+++.+.+|+++++.|+.+-+....+ +.....-+..|..|+.++.+++.+|..++..|
T Consensus 2024 ~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2024 NELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 3344444445555555555555555443332222 22222233445556666666666666655555
Q ss_pred H
Q 041765 108 N 108 (163)
Q Consensus 108 ~ 108 (163)
-
T Consensus 2104 ~ 2104 (3245)
T 3vkg_A 2104 V 2104 (3245)
T ss_dssp H
T ss_pred c
Confidence 3
No 140
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=74.70 E-value=7 Score=23.02 Aligned_cols=24 Identities=4% Similarity=0.167 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVN 77 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~ 77 (163)
++..|+.+|+.|-.++..|..++.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~ 25 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHH
Confidence 356677777666666655544443
No 141
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=74.60 E-value=1.5 Score=35.81 Aligned_cols=8 Identities=0% Similarity=0.115 Sum_probs=4.4
Q ss_pred cCCCcCcc
Q 041765 149 LNQPIMAS 156 (163)
Q Consensus 149 ~~qpi~a~ 156 (163)
+++|+|+.
T Consensus 99 ~gm~Vi~~ 106 (255)
T 2j5u_A 99 PDMAVTTP 106 (255)
T ss_dssp TTCEEEET
T ss_pred CCCEEEEC
Confidence 45666643
No 142
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=74.18 E-value=3.9 Score=28.25 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILT 74 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~ 74 (163)
.++.+|+.++.+|+.||.-|+.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443
No 143
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=73.96 E-value=2.2 Score=31.43 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVN 77 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~ 77 (163)
..-+++|.+++.+|+-||..|++++.
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34589999999999999999999986
No 144
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=73.13 E-value=2.7 Score=34.49 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 30 DQRKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILT 74 (163)
Q Consensus 30 deRk~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~ 74 (163)
+.+|.+|.+|-=.==-++|+-+..-.+++-.+.+.+..+..+|..
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~ 162 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNA 162 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888887765555667766666555555554444444433333
No 145
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=73.01 E-value=6.4 Score=26.75 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVN 77 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~ 77 (163)
.|+..|+.++..|+.++..|...++
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666555543
No 146
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=72.94 E-value=16 Score=32.12 Aligned_cols=56 Identities=14% Similarity=0.346 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 59 IAQVDQLRKENNQILTSVNITTQ---HYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 59 e~qv~~L~~EN~~L~~~i~~l~~---~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
..++..|+++.+.+.++|..+.. ....+..+-..|+.++.+|..++..+.+-+..+
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544321 133556666667777777777777766666544
No 147
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=72.74 E-value=5.2 Score=32.76 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=12.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 74 TSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
.+...+..++..+..||..+++++.+|++++..
T Consensus 148 ~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 148 WQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444455555555555555555555443
No 148
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=72.41 E-value=45 Score=30.58 Aligned_cols=43 Identities=5% Similarity=0.133 Sum_probs=32.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
+|..+|..|++.+.......++|+.-|.++..+++.|+.-|.+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777666677788888888888888888765554
No 149
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=71.95 E-value=26 Score=25.51 Aligned_cols=61 Identities=23% Similarity=0.222 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+.+.+..+..|......|...+..+..++...+..|..|-+.-..|...+..|..-|.-++
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666677777777777777777777777777777777777777777766654
No 150
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=71.92 E-value=23 Score=24.85 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
+-.+.|..|+.+-..+..+...+..+...+...-.....+-+.++.++.++.+.+.+++..+.+.
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666655555555555555555655556666677777888888888888888777664
No 151
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=71.09 E-value=4.7 Score=25.82 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQ 81 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~ 81 (163)
..|+.+...+..|..||..|..++..+.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777888888777777665544
No 152
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=71.01 E-value=22 Score=31.86 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 59 IAQVDQLRKENNQILTSVNITTQ---HYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 59 e~qv~~L~~EN~~L~~~i~~l~~---~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
..++..|+++-+.+.++|..+.. ....+..+-..|+.++.+|..++..+.+-+..+
T Consensus 46 ~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 46 RFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444322 134566677777777777777777777666543
No 153
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=70.96 E-value=25 Score=38.46 Aligned_cols=54 Identities=11% Similarity=0.244 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 61 QVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
++...+.+-..+..++..++.+|.....|...|+.++...+.+|..-+.++.-+
T Consensus 2029 ~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555666777777888888888888888888888888877776666543
No 154
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=70.62 E-value=11 Score=26.03 Aligned_cols=9 Identities=22% Similarity=0.139 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 041765 53 KHLDDLIAQ 61 (163)
Q Consensus 53 ~~l~eLe~q 61 (163)
.....|..-
T Consensus 23 ~~f~~Lr~~ 31 (88)
T 1nkp_A 23 RSFFALRDQ 31 (88)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 334444433
No 155
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=70.56 E-value=29 Score=25.49 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 48 RMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 48 R~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
...-+.++.+|..+|..|+.+...-+. .......||..||.++..|...
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~-------~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQH-------LRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777766655332 3445667778888777766433
No 156
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=70.51 E-value=30 Score=29.51 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl 104 (163)
+..++.|...|..++.++++++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344334444444333333
No 157
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=70.43 E-value=19 Score=31.44 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
+.+|.+++..|+.++.++..++..+.+++...+.+...|--++.+|
T Consensus 12 l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 12 VVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444444443333333
No 158
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.41 E-value=24 Score=24.56 Aligned_cols=31 Identities=3% Similarity=0.083 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 76 VNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
|..+..++..+..+|..|..++..|+..+..
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555544444433
No 159
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=70.37 E-value=5.4 Score=23.50 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 76 VNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
.+.+..+++.|..+|..|..++..|+.-|
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 34556677778888888888888776543
No 160
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=69.44 E-value=6.7 Score=23.10 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 77 NITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 77 ~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
+.+..+.+.|..+|..|..++..|+.-
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455666777778888888777776543
No 161
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=69.29 E-value=16 Score=22.49 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 81 QHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
+.+..+++|...|...+..|..+|+.|
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777777777777776666654
No 162
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=69.26 E-value=15 Score=31.37 Aligned_cols=40 Identities=20% Similarity=0.047 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 75 SVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 75 ~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
++..++..+...+.+...|+.++..+..+|..|...|..+
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555555555555555544443
No 163
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=69.17 E-value=50 Score=28.61 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRLDSLNDILNF 113 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~l~~il~~ 113 (163)
...+..+-..|+.++.+|..++..+.+-+..
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666665554
No 164
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=69.06 E-value=10 Score=22.34 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 77 NITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 77 ~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
+.|..+.+.|..+|..|..++..|+.-|
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4455666777788888888877776544
No 165
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=68.53 E-value=50 Score=28.06 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041765 90 NSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 90 N~~Lraql~eL~~rl~~l~~i 110 (163)
...|..++.+|.++|+.+.-.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 166
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=67.30 E-value=20 Score=22.36 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 041765 58 LIAQVDQLRKENNQILTS 75 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~ 75 (163)
|..++..|++.|-+|...
T Consensus 8 lrkkiarlkkdnlqlerd 25 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERD 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhh
Confidence 445555666666555443
No 167
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=67.07 E-value=21 Score=25.98 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENS 91 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~ 91 (163)
..-..+.++..|+.++.+|+..+.........+-.+|.
T Consensus 12 ~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~ 49 (125)
T 1joc_A 12 RCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQ 49 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444455666666666666655544444443333333
No 168
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=66.84 E-value=45 Score=27.07 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 85 NIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 85 ~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
....|+..+++++++-++.+..+.+
T Consensus 189 ~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 189 RTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 169
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=66.69 E-value=0.087 Score=37.68 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 041765 31 QRKRKRMQSNRESARRSRMRKQ 52 (163)
Q Consensus 31 eRk~rR~lsNReSARRSR~RKq 52 (163)
-|..||.-+||.+|+++|.||-
T Consensus 65 IrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 65 IRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHhhhhHHHHHHcchhhc
Confidence 4677888999999999999874
No 170
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=66.39 E-value=14 Score=21.06 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 79 TTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 79 l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
+.......++||-.|.+++..|...
T Consensus 6 lekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 6 LEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3444566788888888888877653
No 171
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=66.12 E-value=27 Score=23.51 Aligned_cols=47 Identities=6% Similarity=0.076 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
.+...+..|+.+-..++..+....+.|..|..-.-.|-.+|+..+.-
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555566666766666777776665443
No 172
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=65.60 E-value=9.3 Score=30.28 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQ 71 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~ 71 (163)
.++.+-..+..|+.+|..
T Consensus 146 lid~~ld~~~~L~~~n~~ 163 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEH 163 (184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 173
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=65.55 E-value=30 Score=23.74 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
...+.....|+..+..|..+.+.|..++..++.-...|-++-.+|...|..++.
T Consensus 31 ~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 31 AKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555444455555555555555555544443
No 174
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=65.52 E-value=26 Score=22.99 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041765 87 ESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 87 ~~EN~~Lraql~eL~~rl~~ 106 (163)
..|...||.++..|..+|.+
T Consensus 55 k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444433
No 175
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=65.23 E-value=16 Score=21.26 Aligned_cols=26 Identities=8% Similarity=-0.097 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 77 NITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 77 ~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
+.|..+++.+..+|..|..++..|+.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455556666667666666666554
No 176
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=65.15 E-value=21 Score=31.09 Aligned_cols=64 Identities=20% Similarity=0.172 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMN-IESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~-l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
..+-.|..+...+..+-+.|+.+.+.+..++.. -..+-..|++++.+|.+++..+..-+..++.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555444432 1134467888888888888888877777654
No 177
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.05 E-value=48 Score=29.10 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=31.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 69 NNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 69 N~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
+..|..+|..|++.+..-.....+|+.-|..+..+++.|+.-|++-
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777766555577777777777777777777666553
No 178
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=64.68 E-value=71 Score=28.01 Aligned_cols=62 Identities=16% Similarity=0.097 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIES---ENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~---EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
+-+|..+...+..+-..|+.+.+.+..++..+.. +-..|++++.+|..++..+..-+..++.
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666666666666655432 2356778888888888888777777654
No 179
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=64.59 E-value=33 Score=23.84 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041765 86 IESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 86 l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
-..|-..|+.++..=...+..|.
T Consensus 52 TK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 52 TKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHH
Confidence 33455555555554444444443
No 180
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=63.89 E-value=33 Score=23.61 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 76 VNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 76 i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
+-.+..++..+..|...||=+++++...+..+..
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344555555666666666666666555555543
No 181
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=63.54 E-value=24 Score=28.89 Aligned_cols=63 Identities=29% Similarity=0.359 Sum_probs=41.8
Q ss_pred HHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 35 KRMQSNRESA-RRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 35 rR~lsNReSA-RRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
=.-++|||.. +.+|.||+.-.+++. .|+... --..++..|++++...++++.+-.+++..++.
T Consensus 96 LK~IR~~E~svqp~R~~R~~l~~~I~----kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 96 LKSIRNIEASVQPSRDRKEKITDEIA----HLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH----HHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 3567888866 666677666555443 343221 12356778888888899999888888876554
No 182
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=63.52 E-value=24 Score=21.93 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
+||.+|..|+.--..|..++..+-.+ ..+-...|++++..|..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae---~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE---YNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 45666666655555555544433322 22333456666655543
No 183
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.39 E-value=26 Score=26.46 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
++.|...++....+...|...+..-...-...+.++..+..++.+|++.
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555544444444445555555555555555443
No 184
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=63.30 E-value=33 Score=23.49 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 041765 86 IESENSVLRAQLLEL 100 (163)
Q Consensus 86 l~~EN~~Lraql~eL 100 (163)
+..+|..|+.++..|
T Consensus 71 L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 71 LRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 444455555555444
No 185
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=63.08 E-value=84 Score=28.08 Aligned_cols=62 Identities=10% Similarity=-0.040 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESE---NSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~E---N~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
.+-+|..+...++.+-+.|+.+.+.+..++-.+... -..|++++.+|.+++..|...+..++
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~ 98 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEAD 98 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666655544331 24566666666666666666666554
No 186
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.54 E-value=16 Score=32.00 Aligned_cols=49 Identities=12% Similarity=0.212 Sum_probs=25.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 68 ENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 68 EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
.+..|..++..+++++..|..|+..|+.++..+..++..+++-+..+..
T Consensus 43 ~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 43 VNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444455555555555666666666666666666665555543
No 187
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=61.95 E-value=13 Score=22.17 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041765 79 TTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 79 l~~~~~~l~~EN~~Lraql~ 98 (163)
...++..|+.+|..|..++.
T Consensus 18 yidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 18 YIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33556677788888877764
No 188
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=61.86 E-value=39 Score=27.28 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLD---SLNDILNFIN 115 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~---~l~~il~~~~ 115 (163)
.=.|.|+..|+.+|..|..++..+ .....+|..+-.++..|.-+|- ++.+++..+.
T Consensus 68 SL~erQ~~~LR~r~~~Le~~L~~L----i~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~ 126 (252)
T 3e98_A 68 SLVERQVRLLRERNIEMRHRLSQL----MDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVE 126 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 334556777777888877777544 3467889999999999888887 5556666553
No 189
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=61.77 E-value=26 Score=21.81 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 75 SVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 75 ~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
++..+...+..+..+-...+..+.++.
T Consensus 27 ~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 27 EFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444443
No 190
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=61.66 E-value=13 Score=20.51 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041765 86 IESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 86 l~~EN~~Lraql~eL~~rl~ 105 (163)
|...|..|++++..|.-++.
T Consensus 5 lkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHH
Confidence 34445555555555544443
No 191
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=60.27 E-value=38 Score=23.11 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
...+.++...+..|+.+-..++..+....+.|..|..-.-.|..+|+..+.-|
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34556666777777777777777777777777778777777877777766544
No 192
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=60.20 E-value=50 Score=24.53 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNI 86 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l 86 (163)
.++|+.++..|+..|..|..++..+..++..+
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777778888888888888777777777544
No 193
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=60.16 E-value=36 Score=26.44 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041765 81 QHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~ 101 (163)
.++..+..|...|+.++...+
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777666543
No 194
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=59.37 E-value=60 Score=29.01 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=19.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 87 ESE-NSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 87 ~~E-N~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
..+ -..|+.++.+|..++..+.+-+..+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 6677777777777777777666543
No 195
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=59.10 E-value=31 Score=21.86 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNIT 79 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l 79 (163)
.++.|..+|..|......|...+..+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al 30 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544444444433
No 196
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=58.90 E-value=41 Score=23.12 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=17.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
.|..+++.|+-+...+..|+..++.-...+..++..+.+
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555554443
No 197
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=58.78 E-value=41 Score=23.04 Aligned_cols=31 Identities=23% Similarity=0.530 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q 041765 85 NIESENSVLRAQL-------LELTQRLDSLNDILNFIN 115 (163)
Q Consensus 85 ~l~~EN~~Lraql-------~eL~~rl~~l~~il~~~~ 115 (163)
.++++-..||.-+ .+|..++.+|.+=|.++.
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555444 356666666666666654
No 198
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=58.68 E-value=54 Score=26.64 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
.+..|+.++.+.+.|++.+...+..
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~ 203 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQ 203 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555443
No 199
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=58.02 E-value=52 Score=24.06 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTS----VNITTQHYMNIESENSVLRAQ 96 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~----i~~l~~~~~~l~~EN~~Lraq 96 (163)
.++.|..+|..|+.+...+..+ +..+..++..|++|...=+.+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554333 233344444444444444433
No 200
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=57.95 E-value=50 Score=23.86 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 041765 89 ENSVLRAQLLELTQRL 104 (163)
Q Consensus 89 EN~~Lraql~eL~~rl 104 (163)
|...|+.++.+|+.+|
T Consensus 19 e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 19 EIEKLQTKVLELQRKL 34 (125)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 201
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=57.64 E-value=34 Score=23.69 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 84 MNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 84 ~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
..+..+-..|+.....+..++..+...+..++.
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444455666666677777777777777654
No 202
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=57.33 E-value=12 Score=27.76 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 79 TTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 79 l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
+..++..|..|+..|+.++.+|+.++..
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555544443
No 203
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=57.31 E-value=53 Score=23.89 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041765 63 DQLRKENNQILTSVNITTQHYMNIESENSVL 93 (163)
Q Consensus 63 ~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~L 93 (163)
..|+.+...|+.....+...+..|+..|..|
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3333333333333333333333333333333
No 204
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=57.16 E-value=38 Score=22.14 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041765 93 LRAQLLELTQRLDSLND 109 (163)
Q Consensus 93 Lraql~eL~~rl~~l~~ 109 (163)
.+.++.+|+..++.|.-
T Consensus 54 ~k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 205
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=57.11 E-value=57 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 78 ITTQHYMNIESENSVLRAQLLELTQRL 104 (163)
Q Consensus 78 ~l~~~~~~l~~EN~~Lraql~eL~~rl 104 (163)
.+..++..|+..|..|+.++.++....
T Consensus 54 eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 54 ELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555444444333
No 206
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=57.09 E-value=37 Score=22.01 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
..-+.+|+.++..++.--..+..++....-....+..++..=+..+..|..++..+..
T Consensus 5 ~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~ 62 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQ 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3455666666666555444444444444333333333333334455556666555543
No 207
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=57.00 E-value=47 Score=23.19 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
...+..++.+...|..+-.......+....+...+..+-..|..|+.--...|..|
T Consensus 38 ~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 38 AENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555455555555555555555555555555555444444443
No 208
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=56.53 E-value=30 Score=24.07 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
.+.+.+...|+..|..|..+++.
T Consensus 52 ~e~e~r~k~le~~n~~l~~riqE 74 (83)
T 4ath_A 52 KDLENRQKKLEHANRHLLLRVQE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHH
Confidence 33344444444444444444433
No 209
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=54.94 E-value=14 Score=23.22 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTS 75 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~ 75 (163)
..+++.|+.++..|+.....|...
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888777766665443
No 210
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=53.50 E-value=38 Score=21.04 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
.++++..++..++.+-..+...+..+.+.+..+..+-..|+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 13 QVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444333
No 211
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=53.04 E-value=1.3e+02 Score=27.20 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMN----IESENSVLRAQLLELTQR----LDSLNDILNFIN 115 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~----l~~EN~~Lraql~eL~~r----l~~l~~il~~~~ 115 (163)
|..|...+.++++.++.|+.+............. +.+||..++++-+...+. |...+.-|...+
T Consensus 8 q~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~ 79 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQ 79 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 212
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=52.59 E-value=65 Score=23.50 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 62 VDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 62 v~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
|..|+.+..-...-+..-...-+.+..|...|..++..|+.++..|
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 4444444444444444444455667778888888888888776543
No 213
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=52.52 E-value=61 Score=26.13 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=32.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 041765 73 LTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSG 119 (163)
Q Consensus 73 ~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~ 119 (163)
+.++..|-..+..+..|+..|+.+..+|+.-...+..+..+|+.-.|
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555666666677777777777777777777777777777777666
No 214
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=52.18 E-value=53 Score=22.34 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 75 SVNITTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 75 ~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
++..+...+..++.+...+|+.+.......+
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556666666666554433333
No 215
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=51.98 E-value=31 Score=19.68 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 87 ESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 87 ~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
+.+-..|.+-+.+|+.|+..|++.+
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555544
No 216
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=51.75 E-value=33 Score=28.67 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 041765 59 IAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTSSGI 120 (163)
Q Consensus 59 e~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~~~~ 120 (163)
+.+++.|+.+|+.|..++..+....+.+...| .+++..|+.-+...+..=|+
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n----------~~rl~~Lqk~~~~~~~~LGl 235 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKAN----------AERLKRLQKSADLYKDRLGL 235 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HTTTTTHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------HHHHHHHHHHHHHHHHHcce
Confidence 44566666666666666665555444333322 33344444445555555553
No 217
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.51 E-value=63 Score=23.02 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=6.2
Q ss_pred HHHHHHHHhHHHHH
Q 041765 67 KENNQILTSVNITT 80 (163)
Q Consensus 67 ~EN~~L~~~i~~l~ 80 (163)
.+...+..++..|+
T Consensus 47 ~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 47 EEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 218
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=51.40 E-value=69 Score=25.76 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
+|+++-.....+.++|+..+..+.+||+.|+..+..|.
T Consensus 34 ~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 34 QLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 34444444445555555556666666666666665554
No 219
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=50.53 E-value=64 Score=25.42 Aligned_cols=27 Identities=11% Similarity=0.168 Sum_probs=11.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 74 TSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 74 ~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
..+..|..+...|..||..|+.+..+.
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444433
No 220
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=50.52 E-value=22 Score=29.80 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITT 80 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~ 80 (163)
+.++.|+.+...|+.|-..|......+.
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455555555555555555544444333
No 221
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.22 E-value=83 Score=24.07 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 89 ENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 89 EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
+-..+..+...|..++..-..+|..+
T Consensus 109 ~~~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 109 EKYAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555444
No 222
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.90 E-value=15 Score=33.35 Aligned_cols=87 Identities=18% Similarity=0.253 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 28 AMDQRKRKRMQSNRESA-RRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 28 ~~deRk~rR~lsNReSA-RRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
..++|-+|.+.++|... +.-|..=.....+|+.++.+++.+.......+...++....|+.+......+...|..+-..
T Consensus 309 a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~ 388 (575)
T 2i1j_A 309 AREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNE 388 (575)
T ss_dssp HHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554321 11121112224577777777777777666666655555555555555555555555555444
Q ss_pred HHHHHHHH
Q 041765 107 LNDILNFI 114 (163)
Q Consensus 107 l~~il~~~ 114 (163)
+...+..+
T Consensus 389 ~e~~~~~l 396 (575)
T 2i1j_A 389 LQAMMQRL 396 (575)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44444443
No 223
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=48.54 E-value=39 Score=19.78 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 77 NITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 77 ~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
+.+..+.+.|..+|..|..++..|+.-
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555666666666666666665543
No 224
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.04 E-value=88 Score=28.68 Aligned_cols=47 Identities=9% Similarity=0.186 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
+.++-++|+.++..|+.+.+.-...|..|+..+..+..+-..|..-|
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555444444555555554444444444444333
No 225
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=47.88 E-value=40 Score=22.35 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 44 ARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 44 ARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
-|+-|..=...++.|..-|-.+...-..=..-+......+..|..++..|..++..|+.
T Consensus 20 Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 20 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333455666666555432100001112233344556667777777777766654
No 226
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=47.74 E-value=37 Score=19.32 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 041765 60 AQVDQLRKENNQILTS 75 (163)
Q Consensus 60 ~qv~~L~~EN~~L~~~ 75 (163)
.++..|++|...|+-+
T Consensus 9 qeiaalkkeiaalkfe 24 (33)
T 4dzn_A 9 QEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 227
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=47.51 E-value=51 Score=24.20 Aligned_cols=26 Identities=4% Similarity=0.118 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 89 ENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 89 EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
....|.+++.+|+..+..|...+..+
T Consensus 103 ~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 103 QEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 228
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=47.51 E-value=49 Score=20.57 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=18.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 69 NNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 69 N~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
|.-|+++|..++....+|+..-..|..-+..|++.+..|
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Confidence 444455555554444444444444444444444444433
No 229
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=47.38 E-value=37 Score=21.43 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNI 86 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l 86 (163)
.|+.-|..|+..|..|...|..+...+..|
T Consensus 21 klenivarlendnanlekdianlekdianl 50 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEKDIANL 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 455555555555555555554444444433
No 230
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=45.41 E-value=1.3e+02 Score=26.74 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=17.0
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhc
Q 041765 94 RAQ-LLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 94 raq-l~eL~~rl~~l~~il~~~~~ 116 (163)
.++ +.+|.+++..+...+..++.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~ 132 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEE 132 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677 77888888888777776644
No 231
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.99 E-value=39 Score=29.43 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
.+|..++..|+.+...|..+.. .+..+...|+.++..++.+++.+.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e-------~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQED-------YIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555566666666555554433 344455556666666666665554
No 232
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=44.72 E-value=57 Score=20.61 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 041765 61 QVDQLRKENNQILTSVNITTQ 81 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~ 81 (163)
++.+|..+-+.|..++..|..
T Consensus 5 ki~~Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 233
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=44.68 E-value=8.8 Score=27.94 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=15.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 36 RMQSNRESARRSRMRKQKHLDDLIAQVD 63 (163)
Q Consensus 36 R~lsNReSARRSR~RKq~~l~eLe~qv~ 63 (163)
|+...-.+-|+-|.+=...+.+|..-|-
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP 54 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIP 54 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666666666666777666544
No 234
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=44.31 E-value=1.1e+02 Score=23.76 Aligned_cols=66 Identities=21% Similarity=0.326 Sum_probs=41.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 36 RMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 36 R~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
.+..-=+.=|+.|.+-.+.+.+|+.++..|+.|...++ ..+..+..+|..|-..+..|...-.++.
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k-------~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK-------HNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444445566666666666777777666666655544 4455667777777777777766665555
No 235
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=43.63 E-value=73 Score=21.48 Aligned_cols=30 Identities=10% Similarity=0.235 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041765 58 LIAQVDQLRKENNQILTSVNITTQHYMNIE 87 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i~~l~~~~~~l~ 87 (163)
|...|..|..|+..|..++....+.+..+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777766666666655443
No 236
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=43.09 E-value=45 Score=19.53 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 041765 58 LIAQVDQLRKENNQILTSV 76 (163)
Q Consensus 58 Le~qv~~L~~EN~~L~~~i 76 (163)
..+.+.+|+.+|..|..++
T Consensus 12 ~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHH
Confidence 3444555555555555444
No 237
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.93 E-value=1.7e+02 Score=25.53 Aligned_cols=46 Identities=9% Similarity=0.144 Sum_probs=29.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
.+..++..++..+...+.+...|+.++..++.+++.|...+..+..
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444444444444555556677777777777888888777766644
No 238
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=42.54 E-value=9.1 Score=31.14 Aligned_cols=11 Identities=18% Similarity=0.298 Sum_probs=4.1
Q ss_pred HHHHHHHHHhH
Q 041765 66 RKENNQILTSV 76 (163)
Q Consensus 66 ~~EN~~L~~~i 76 (163)
..||++|+.++
T Consensus 25 ~~eN~~Lk~e~ 35 (255)
T 2j5u_A 25 YTENQHLKERL 35 (255)
T ss_dssp -CTTTTHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 239
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=42.36 E-value=1.3e+02 Score=25.96 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 85 NIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 85 ~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.+.++-..|+.++.+|..++..+.+-+..+
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777666554
No 240
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=42.18 E-value=44 Score=22.29 Aligned_cols=14 Identities=14% Similarity=0.456 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQ 64 (163)
Q Consensus 51 Kq~~l~eLe~qv~~ 64 (163)
|...+.+|+..+..
T Consensus 23 Kde~I~eLE~~L~~ 36 (67)
T 1zxa_A 23 KEERIKELEKRLSE 36 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 55566666555443
No 241
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=41.41 E-value=86 Score=21.68 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQ 71 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~ 71 (163)
+.+|.-+|..++.|-.+
T Consensus 28 i~~Lr~kv~elEnErlQ 44 (81)
T 3qh9_A 28 LRHLKIKVEELENERNQ 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 242
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=41.39 E-value=90 Score=21.93 Aligned_cols=65 Identities=8% Similarity=0.122 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQH-----YMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~-----~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
++.+.+|+.++......-.-|..-+....+. -..++.+.......+..|+..+..+...|..++.
T Consensus 21 ~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 21 QQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777777777766666555555443322 1234566666677777777777777777777653
No 243
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=40.90 E-value=62 Score=19.87 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 81 QHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
.....++.||..|+..--.-.+-+..|
T Consensus 10 nevaslenenetlkkknlhkkdliayl 36 (49)
T 3he5_A 10 NEVASLENENETLKKKNLHKKDLIAYL 36 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHhcccHHHHHHHH
Confidence 334556666666665543333333333
No 244
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=40.47 E-value=95 Score=22.02 Aligned_cols=26 Identities=8% Similarity=0.201 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 89 ENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 89 EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
+-..|.+++..|...+..+...++.+
T Consensus 16 ~~~~l~~~~~~l~~~i~e~~~~~e~l 41 (133)
T 1fxk_C 16 QVELIQQQMEAVRATISELEILEKTL 41 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333333
No 245
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.01 E-value=14 Score=23.35 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 81 QHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
.-...|+..|..|...+..|...+..|+.
T Consensus 24 nivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 24 NIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 33456777888888888877777766654
No 246
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=39.97 E-value=68 Score=21.32 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
+..|+.++..=.+++.+|+.+|..+.+|+.
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555555555666666666666666664
No 247
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=39.84 E-value=1.2e+02 Score=23.04 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 42 ESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 42 eSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
+-|-|+=.+-+..++.|+.++..-+..+..+...+..+-..+..+.+-+-.|.-++..|.
T Consensus 94 E~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 94 EFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
No 248
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=39.47 E-value=28 Score=23.15 Aligned_cols=18 Identities=0% Similarity=0.050 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENN 70 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~ 70 (163)
.|+..|+.++..|+.++.
T Consensus 57 ~YI~~L~~~~~~L~~e~~ 74 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDID 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 249
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=39.23 E-value=70 Score=20.05 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 75 SVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 75 ~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
++..+++-+..|...-..|...+.++.+++..|+.+|.
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 34445555555555556666666666666666666654
No 250
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=39.12 E-value=73 Score=26.01 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQI 72 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L 72 (163)
+++++|.+++.|+....++
T Consensus 7 Rvd~~EErIs~le~rleei 25 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEI 25 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444443
No 251
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=39.11 E-value=1.4e+02 Score=23.37 Aligned_cols=21 Identities=10% Similarity=0.060 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 041765 57 DLIAQVDQLRKENNQILTSVN 77 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~ 77 (163)
.-+..|..|+++|..|..++.
T Consensus 132 ~AertV~kLqkeiD~LEDeL~ 152 (175)
T 3mud_A 132 YCLDTTAKNEKSIDDLEEKVA 152 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 252
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=39.04 E-value=1.1e+02 Score=22.02 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
.|+.--.+|...|..|...--.++.....-.-+|.+|..++..|
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444455555555555544444444444445555665555544
No 253
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=39.01 E-value=1.1e+02 Score=25.90 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041765 91 SVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 91 ~~Lraql~eL~~rl~~l~~ 109 (163)
..|..|+..+..++.....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~ 302 (426)
T 1lrz_A 284 DNLQQQLDANEQKIEEGKR 302 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 254
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=38.95 E-value=2.2e+02 Score=25.67 Aligned_cols=46 Identities=9% Similarity=0.089 Sum_probs=35.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 69 NNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 69 N~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
...|..++..+++.+..-..-..+|+.-|..+.-+++.|+.-|..-
T Consensus 113 S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 113 STELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777776666777888888888888888888777653
No 255
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=38.75 E-value=18 Score=22.97 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQ 71 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~ 71 (163)
+..+++.|+.+|..|+.....
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888877655443
No 256
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=38.37 E-value=89 Score=21.01 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNIE 87 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~ 87 (163)
+|...|..|..|+..|..++....+.+..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888888888887777777665543
No 257
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=38.37 E-value=35 Score=23.09 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 79 TTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 79 l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
+..-+..-++-|..|-.|+.-|...+.-+
T Consensus 34 l~~LL~EsEatnarL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 34 LNGLLRETEATNAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555554444
No 258
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=38.35 E-value=1.3e+02 Score=22.91 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 041765 86 IESENSVLR 94 (163)
Q Consensus 86 l~~EN~~Lr 94 (163)
|..||..++
T Consensus 145 LkvENE~vk 153 (167)
T 4gkw_A 145 LSMENENLK 153 (167)
T ss_dssp HHHHHHHHH
T ss_pred HhhhhHhHH
Confidence 333333333
No 259
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=38.31 E-value=83 Score=20.63 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 041765 92 VLRAQLLELTQRLD 105 (163)
Q Consensus 92 ~Lraql~eL~~rl~ 105 (163)
.+..++..++.+|.
T Consensus 42 eI~~kV~~~RkkL~ 55 (61)
T 2e62_A 42 EIERKVEINRKRLE 55 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555553
No 260
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=38.12 E-value=84 Score=20.65 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=24.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 72 ILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 72 L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
++..+..-..++..|..-|..|-.++..++.+++.|..
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 33444444555666777777777777777777766654
No 261
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=38.03 E-value=1.5e+02 Score=23.48 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITT 80 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~ 80 (163)
-++++..|..++..|+.+...|..++..+.
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v 166 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAV 166 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666555555555443
No 262
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.38 E-value=1e+02 Score=21.32 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=21.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 67 KENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 67 ~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
.|-...+..+..+..++...+..|..|..++..|+.++..
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555566666666666666555554
No 263
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=37.36 E-value=1.9e+02 Score=24.49 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNI 86 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l 86 (163)
.++++.|..+...+...-..+.-.+..++..++.+
T Consensus 223 E~rle~L~~ere~~~e~~a~~afd~qk~qRl~q~~ 257 (302)
T 3ibp_A 223 ESRIESLHAEREVLSERFATLSFDVQKTQRLHQAF 257 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45566777666666554444444444444444444
No 264
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=36.88 E-value=1.2e+02 Score=22.04 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 84 MNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 84 ~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
..++.+-..|...+..|...+..+.
T Consensus 91 ~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 91 IELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 265
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=36.82 E-value=1e+02 Score=21.27 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
-.|+..|..++..+..+.. +...++..|..|--.+.||.-.
T Consensus 38 vdYI~~Lq~e~~r~~e~e~-----------r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHHHH
Confidence 5677777666655544433 3455778888887777766543
No 266
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=36.65 E-value=95 Score=20.83 Aligned_cols=51 Identities=8% Similarity=0.162 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
...+.++...+..|+.+-..++..+....+.|..|..-.-.|..+|...+.
T Consensus 25 ~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRk 75 (84)
T 1gk4_A 25 AVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334455555666666666666666655556666666666666666655543
No 267
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=36.23 E-value=23 Score=30.07 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041765 90 NSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 90 N~~Lraql~eL~~rl~~l~~i 110 (163)
...|+..+..+..++..|...
T Consensus 20 i~~L~~~l~~~~~ki~~L~~~ 40 (319)
T 1fzc_C 20 IRYLQEIYNSNNQKIVNLKEK 40 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433
No 268
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.23 E-value=1.2e+02 Score=21.78 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
+.++...+..|+.+-..++..+....+.|..|..-.-.|..+|...+
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555443
No 269
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=36.08 E-value=1.4e+02 Score=23.17 Aligned_cols=38 Identities=24% Similarity=0.094 Sum_probs=17.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 66 RKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQR 103 (163)
Q Consensus 66 ~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~r 103 (163)
+.-...|......+......++.+-..|...+..|...
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~ 85 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTAN 85 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444455555555555555443
No 270
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.42 E-value=1.2e+02 Score=21.77 Aligned_cols=49 Identities=10% Similarity=0.201 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~ 102 (163)
.+.++...+..|+.+-..++..+....+.|..|..-.-.|..+|...+.
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666666666665543
No 271
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=35.26 E-value=74 Score=22.79 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041765 86 IESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 86 l~~EN~~Lraql~eL~~rl~ 105 (163)
...++..|+.++..|..+|.
T Consensus 94 e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 94 EKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 272
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=35.13 E-value=78 Score=23.16 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 041765 61 QVDQLRKENNQILTSVNITTQ 81 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~ 81 (163)
+-..|+.+...|..++..+++
T Consensus 8 ~~~~L~~~i~~l~~~L~~lkq 28 (122)
T 3viq_A 8 RRLKLEKEVRNLQEQLITAET 28 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 273
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=34.90 E-value=1.8e+02 Score=23.44 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 78 ITTQHYMNIESENSVLRAQLLELTQRLDSLNDILN 112 (163)
Q Consensus 78 ~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~ 112 (163)
..+..+...+++-..+++++..++..|..+...+.
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLG 153 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444455555555555555555555544443
No 274
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=34.82 E-value=89 Score=22.76 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQI 72 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L 72 (163)
.+.+|+.+|+.++..++.|
T Consensus 5 e~~~l~~qi~~~ekr~~RL 23 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRL 23 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444
No 275
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=34.54 E-value=56 Score=23.99 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHY 83 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~ 83 (163)
+|..+|..|..++..|..++..+..++
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444444443
No 276
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=34.53 E-value=24 Score=25.86 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041765 77 NITTQHYMNIESENSVLRAQLL 98 (163)
Q Consensus 77 ~~l~~~~~~l~~EN~~Lraql~ 98 (163)
..|..++..|.-||..||.++.
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556667777777777664
No 277
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=33.73 E-value=1.3e+02 Score=21.82 Aligned_cols=32 Identities=9% Similarity=-0.012 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
...+..-...|...+..+...+.....-+..+
T Consensus 97 i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 128 (142)
T 3gp4_A 97 IDVMQEALDRLDFKIDNYDTHLIPAQEELKDF 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333333444444444444444434333333
No 278
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=33.72 E-value=1.2e+02 Score=21.06 Aligned_cols=30 Identities=20% Similarity=0.056 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 80 TQHYMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 80 ~~~~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
......++.|-...-.++..|+.+|+.|+.
T Consensus 55 kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 55 GRSLGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334456677777777788888888877763
No 279
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.93 E-value=47 Score=29.00 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 84 MNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 84 ~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
..+..|+..|+.++.+++.++..+
T Consensus 49 ~r~~~e~~~~~~~~~~~~~~i~~~ 72 (434)
T 4b4t_M 49 QRLSHENNVMLEKIKDNKEKIKNN 72 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555555555443
No 280
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=32.73 E-value=99 Score=20.54 Aligned_cols=29 Identities=3% Similarity=0.100 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQH 82 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~ 82 (163)
+.+.+..++..|+.|..-.-.++..+.-.
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l 45 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELI 45 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555555555555555444444444333
No 281
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=32.66 E-value=1.3e+02 Score=21.15 Aligned_cols=44 Identities=23% Similarity=0.119 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNI----ESENSVLRAQLLEL 100 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l----~~EN~~Lraql~eL 100 (163)
+.+.+|..--.|-+.++..+-.|...+..+ +.|...||.++...
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444444444455555555555444333 45666677666543
No 282
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=32.37 E-value=59 Score=21.97 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041765 84 MNIESENSVLRAQLLEL 100 (163)
Q Consensus 84 ~~l~~EN~~Lraql~eL 100 (163)
..|..+|..||.+|..|
T Consensus 46 arL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 46 AILMEQIKLLKSEIRRL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555444
No 283
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=32.26 E-value=2.5e+02 Score=24.60 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=30.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041765 71 QILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINTS 117 (163)
Q Consensus 71 ~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~ 117 (163)
.+..++..+...+.........|+..+.....++..|...+..+...
T Consensus 88 kml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 88 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666777777777777777777777777554
No 284
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=32.14 E-value=1.4e+02 Score=21.40 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041765 84 MNIESENSVLRAQLLELT 101 (163)
Q Consensus 84 ~~l~~EN~~Lraql~eL~ 101 (163)
..++.+|..|..++.+|.
T Consensus 94 ~~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 94 KKLEHANRHLLLRVQELE 111 (118)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 446666666666665554
No 285
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.98 E-value=1.3e+02 Score=21.17 Aligned_cols=33 Identities=6% Similarity=0.152 Sum_probs=14.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 74 TSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
.++..+......+...-..+++++..+...++.
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444433
No 286
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=31.87 E-value=1.4e+02 Score=21.18 Aligned_cols=10 Identities=40% Similarity=0.411 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 041765 88 SENSVLRAQL 97 (163)
Q Consensus 88 ~EN~~Lraql 97 (163)
..+.+|++|+
T Consensus 40 E~i~vLk~Qv 49 (94)
T 3jsv_C 40 ETVPVLKAQA 49 (94)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 287
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=31.84 E-value=1.1e+02 Score=20.33 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 041765 86 IESENSVLRAQL 97 (163)
Q Consensus 86 l~~EN~~Lraql 97 (163)
++.+...+|+.+
T Consensus 17 lE~eL~~~r~e~ 28 (74)
T 2xv5_A 17 KEREMAEMRARM 28 (74)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333344333
No 288
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=31.59 E-value=1.2e+02 Score=20.36 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 77 NITTQHYMNIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 77 ~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
..+...+..++.+-..+|+.+.......+.|-
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666677777776665544444443
No 289
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=31.30 E-value=1.3e+02 Score=20.86 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 56 DDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLEL 100 (163)
Q Consensus 56 ~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL 100 (163)
..+...+..|+.+-..++..+......|..|..-.-.|..+|...
T Consensus 40 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 40 DNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555544444445555555555555555444
No 290
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=31.21 E-value=90 Score=27.00 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 91 SVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 91 ~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
..|++++.+|.+++..+..-+..++
T Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (425)
T 2dq3_A 71 TEIQNRVKELKEEIDRLEEELRKVE 95 (425)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655555553
No 291
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=30.93 E-value=24 Score=25.24 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041765 50 RKQKHLDDLIAQVDQLR 66 (163)
Q Consensus 50 RKq~~l~eLe~qv~~L~ 66 (163)
.|+..+++|..++.+++
T Consensus 35 ~KQ~~ideLKe~i~q~~ 51 (96)
T 3fx0_A 35 AKQEVIDKLKEEAEQHK 51 (96)
T ss_dssp TTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36666666666665555
No 292
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=30.83 E-value=1.3e+02 Score=20.73 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 041765 94 RAQLLELTQRLD 105 (163)
Q Consensus 94 raql~eL~~rl~ 105 (163)
+.++..|..++.
T Consensus 94 ~~q~~~L~~kf~ 105 (127)
T 1ez3_A 94 KTQHSTLSRKFV 105 (127)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444544443
No 293
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=30.59 E-value=1.9e+02 Score=22.34 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 75 SVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 75 ~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
++...++.|. .-|..|+.++..|.
T Consensus 187 el~~ak~~ye---~ln~~L~~eLp~l~ 210 (251)
T 2fic_A 187 ELIKAQKVFE---EMNVDLQEELPSLW 210 (251)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3444444444 34777777777763
No 294
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=30.48 E-value=1.6e+02 Score=21.61 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041765 80 TQHYMNIESENSVLRAQL 97 (163)
Q Consensus 80 ~~~~~~l~~EN~~Lraql 97 (163)
..+|..|..+-..++.+|
T Consensus 70 K~eY~~L~KkYk~~~~~L 87 (119)
T 2avr_X 70 KSQYQELASKYEDALKKL 87 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555544444333
No 295
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=30.46 E-value=1.5e+02 Score=21.69 Aligned_cols=17 Identities=0% Similarity=0.149 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041765 97 LLELTQRLDSLNDILNF 113 (163)
Q Consensus 97 l~eL~~rl~~l~~il~~ 113 (163)
+.+....|..+..++..
T Consensus 112 v~e~e~ll~~v~~~l~~ 128 (132)
T 1ykh_B 112 IKKKEKLMRHVDSMIED 128 (132)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444443
No 296
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=30.43 E-value=1e+02 Score=19.31 Aligned_cols=10 Identities=10% Similarity=0.454 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q 041765 49 MRKQKHLDDL 58 (163)
Q Consensus 49 ~RKq~~l~eL 58 (163)
+||...+++|
T Consensus 6 rrr~e~ld~l 15 (49)
T 2xus_A 6 RRRSECVSEM 15 (49)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555555
No 297
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=29.52 E-value=1.4e+02 Score=20.68 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 77 NITTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 77 ~~l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
..+...+..++++-..+|+++.......+
T Consensus 40 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 68 (95)
T 3mov_A 40 DNSRRMLTDKEREMAEIRDQMQQQLNDYE 68 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666666665554433333
No 298
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.40 E-value=1.2e+02 Score=19.71 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 55 LDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+.+++.++.+....-..+..++.........+..+....+-..-+.+.+..++++++..++
T Consensus 6 i~~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~ 66 (73)
T 3htk_B 6 IKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFN 66 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHH
Confidence 3455555555554444444444444444444444444444444455556666667666654
No 299
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=29.08 E-value=1.8e+02 Score=21.67 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041765 55 LDDLIAQVDQLRK-ENNQILTSVNITTQHYMN-IESENSVLRAQLLELTQRLDSLNDILNFINTS 117 (163)
Q Consensus 55 l~eLe~qv~~L~~-EN~~L~~~i~~l~~~~~~-l~~EN~~Lraql~eL~~rl~~l~~il~~~~~~ 117 (163)
++.|+.++..|.. +-..+...+.....+-.. -.+|-..=|.+...+..|+..|...|..+.-.
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~vi 75 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIV 75 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCeec
Confidence 4456666666633 344444444333321100 00222334777788888888888888876543
No 300
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=28.82 E-value=64 Score=25.59 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041765 55 LDDLIAQVDQLRKENNQI 72 (163)
Q Consensus 55 l~eLe~qv~~L~~EN~~L 72 (163)
+.+|+.+..+|++||+.|
T Consensus 163 i~~L~a~N~hLqkENeRL 180 (186)
T 3q4f_C 163 IAENQAKNEHLQKENERL 180 (186)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 301
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=28.61 E-value=2.3e+02 Score=22.77 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 81 QHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 81 ~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
+.+...+.+-...++++..++.++..+..-+..+..
T Consensus 115 ~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 115 DTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777888888888888888777776653
No 302
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.52 E-value=1.5e+02 Score=20.55 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQI 72 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L 72 (163)
.++.+..++..|+.+|..|
T Consensus 46 ~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 46 EIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444455554443
No 303
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=28.43 E-value=1.1e+02 Score=22.96 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041765 91 SVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 91 ~~Lraql~eL~~rl~~l~ 108 (163)
..++.++.+|..++..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~ 34 (192)
T 2gkw_A 17 SVHDIRLADMDLRFQVLE 34 (192)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334445555555554444
No 304
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.94 E-value=1.8e+02 Score=25.51 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
++.++|+.++..|+.....-...|..|+.-+..+..+-..|...|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777765544433355556555555555555554444
No 305
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=27.78 E-value=2e+02 Score=21.78 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQIL 73 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~ 73 (163)
.++.++.+|+.+-..+.
T Consensus 40 q~d~elqQLefq~kr~~ 56 (150)
T 4dci_A 40 NADQQLAQLEQEGQTVV 56 (150)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 306
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=27.67 E-value=81 Score=20.89 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~l~~ 109 (163)
+..+..|-+.|++++..++++|+....
T Consensus 5 lr~iLqERNELKa~vf~lqeEL~yY~~ 31 (65)
T 1yhn_B 5 FEQILQERNELKAKVFLLKEELAYFQR 31 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777888888888888877664
No 307
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=27.60 E-value=1.4e+02 Score=22.97 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 041765 61 QVDQLRKENNQILTSVNITTQ 81 (163)
Q Consensus 61 qv~~L~~EN~~L~~~i~~l~~ 81 (163)
++..|+.|...+..+|..-++
T Consensus 6 e~~~Le~Ek~~~~~rI~~K~~ 26 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQKQS 26 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666544333
No 308
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.57 E-value=1.1e+02 Score=18.67 Aligned_cols=30 Identities=13% Similarity=0.308 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041765 57 DLIAQVDQLRKENNQILTSVNITTQHYMNI 86 (163)
Q Consensus 57 eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l 86 (163)
+|-.++...-.|...-..+|+.++.+...|
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 309
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=27.52 E-value=61 Score=24.36 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041765 91 SVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 91 ~~Lraql~eL~~rl~~l~~il 111 (163)
..|-+|+.+|.+++..|.+..
T Consensus 108 e~ls~qL~~ls~~v~~L~~q~ 128 (140)
T 3iyn_Q 108 DSLTRELNVVSQQLLDLRQQV 128 (140)
T ss_dssp HHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555433
No 310
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=27.46 E-value=2e+02 Score=21.66 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041765 96 QLLELTQRLDSLNDILN 112 (163)
Q Consensus 96 ql~eL~~rl~~l~~il~ 112 (163)
++.....++..++.+-.
T Consensus 153 el~~~~~~v~~l~~~~~ 169 (210)
T 3pdy_A 153 ELELKEKKIKELQNAGD 169 (210)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 33333344444444333
No 311
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=26.74 E-value=1.2e+02 Score=19.05 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 75 SVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDI 110 (163)
Q Consensus 75 ~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~i 110 (163)
.+....-....+..++...+..+..|..++..+...
T Consensus 27 ~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~~ 62 (66)
T 3m0a_A 27 EVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERS 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHH
Confidence 333333333334344444455555555555555443
No 312
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.39 E-value=96 Score=23.29 Aligned_cols=36 Identities=31% Similarity=0.207 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 80 TQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 80 ~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
....+.++..|..|+.++.+-...|..++..|..+.
T Consensus 95 r~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 95 RMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp THHHHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888888777777777766665554
No 313
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=26.38 E-value=1.9e+02 Score=21.69 Aligned_cols=23 Identities=4% Similarity=0.047 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 041765 93 LRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 93 Lraql~eL~~rl~~l~~il~~~~ 115 (163)
|+..+.+....|..+..++..+.
T Consensus 108 l~~~v~eae~ll~~v~~~l~~ia 130 (151)
T 1yke_B 108 KIEAIKKKEKLLRHVDSLIEDFV 130 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555443
No 314
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=25.97 E-value=1.1e+02 Score=18.65 Aligned_cols=19 Identities=16% Similarity=0.441 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041765 93 LRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 93 Lraql~eL~~rl~~l~~il 111 (163)
|..++..|..+|..|...+
T Consensus 21 LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 21 FEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 315
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=25.82 E-value=1.5e+02 Score=19.60 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 041765 93 LRAQLLELTQRLDSL 107 (163)
Q Consensus 93 Lraql~eL~~rl~~l 107 (163)
++.++..|..+...|
T Consensus 83 i~~~l~~l~~rw~~L 97 (118)
T 3uul_A 83 IQEQMTLLNARWEAL 97 (118)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 316
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=25.79 E-value=97 Score=17.55 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQ 102 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~ 102 (163)
...|.+.|-.-++.+..|+.
T Consensus 10 vqalkarnyaakqkvqalrh 29 (33)
T 1fmh_B 10 VQALKARNYAAKQKVQALRH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 33444444444444444443
No 317
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=25.33 E-value=2e+02 Score=23.01 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 80 TQHYMNIESENSVLRAQLLELTQRLDSLNDILNFIN 115 (163)
Q Consensus 80 ~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~ 115 (163)
+..|..+.+|-+.|..-..+|++.+..|.+=+..++
T Consensus 36 ~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 36 RVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 334444444445555555555555555554444443
No 318
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=25.29 E-value=86 Score=22.10 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 85 NIESENSVLRAQLLELTQRLDSLN 108 (163)
Q Consensus 85 ~l~~EN~~Lraql~eL~~rl~~l~ 108 (163)
.|+.+...|+.++..++.++..|.
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555556666666666665555
No 319
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=25.11 E-value=1.2e+02 Score=23.26 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 83 YMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 83 ~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
|..+.++-..|+.++..+++.+..
T Consensus 102 Yak~~a~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 102 YAQAEAAVEQAGKEATEAKEALDK 125 (158)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555443
No 320
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=24.89 E-value=2.2e+02 Score=21.24 Aligned_cols=80 Identities=10% Similarity=0.170 Sum_probs=43.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 33 KRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQI-------LTSVNITTQHYMNIESENSVLRAQLLELTQRLD 105 (163)
Q Consensus 33 k~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L-------~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~ 105 (163)
|.++.+-||.-+- -..++.|+.++...+..-..- ..++..+...+...+..-.....++.+|...|.
T Consensus 38 R~~k~lE~r~~~d------eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 38 RGMKVIESRAQKD------EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccc------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677776543 345667777776665444443 334444444444444444445555556666666
Q ss_pred HHHHHHHHHhccC
Q 041765 106 SLNDILNFINTSS 118 (163)
Q Consensus 106 ~l~~il~~~~~~~ 118 (163)
.+..-|..++.+.
T Consensus 112 ~~~~nlKsLE~~e 124 (147)
T 2b9c_A 112 TVTNNLKSLEDKV 124 (147)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHhH
Confidence 6555555555433
No 321
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=24.87 E-value=2.9e+02 Score=22.65 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 52 QKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELT 101 (163)
Q Consensus 52 q~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~ 101 (163)
...+.++..+++.|..--..+..++..+++.=..|+.+...++.++..++
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 322
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=24.78 E-value=1.9e+02 Score=20.51 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 041765 44 ARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMN 85 (163)
Q Consensus 44 ARRSR~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~ 85 (163)
-.-||.-=-++-++|+.-+..|+.+|..--.++..++.++..
T Consensus 16 EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd 57 (101)
T 1d7m_A 16 EKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333344566666666677766665666555555443
No 323
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.23 E-value=1.7e+02 Score=19.65 Aligned_cols=37 Identities=5% Similarity=0.214 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 80 TQHYMNIESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 80 ~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
..++..+..+-..|..++..|...+..+..++.-+..
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~ 43 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555666666777777777777777777777765
No 324
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.17 E-value=2.1e+02 Score=20.72 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041765 88 SENSVLRAQLLELTQRLD 105 (163)
Q Consensus 88 ~EN~~Lraql~eL~~rl~ 105 (163)
.+-..|..++.+|+..|.
T Consensus 82 ~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 325
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.98 E-value=2.5e+02 Score=21.57 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041765 88 SENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 88 ~EN~~Lraql~eL~~rl~~l 107 (163)
+.-..|-.++.+|+.++...
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443
No 326
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=23.83 E-value=2e+02 Score=20.56 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 75 SVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 75 ~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.+....+.+..|......|-.++.+|..++....+....+
T Consensus 63 ~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 63 NLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666677777777777777777777766665544
No 327
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.78 E-value=3.9e+02 Score=23.75 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 88 SENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 88 ~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.....|+..+..|..+|+.|...+...
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777777777777766544
No 328
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=23.69 E-value=2.7e+02 Score=21.98 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041765 48 RMRKQKHLDDLIAQVDQLRKENNQILTSVNI 78 (163)
Q Consensus 48 R~RKq~~l~eLe~qv~~L~~EN~~L~~~i~~ 78 (163)
..||.+-++-|..++..|+.+-..|...+..
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777888887777777666543
No 329
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.63 E-value=64 Score=22.81 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 92 VLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 92 ~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
.|++++.+|+.++..+.+-++.+.+
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555555555555555555555543
No 330
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=23.31 E-value=17 Score=30.81 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=0.0
Q ss_pred CCCCCchh
Q 041765 17 QNSASEED 24 (163)
Q Consensus 17 ~~sgs~~d 24 (163)
.++.|++|
T Consensus 32 ~~~~~~~~ 39 (319)
T 1lsh_B 32 SSSSSDSD 39 (319)
T ss_dssp --------
T ss_pred ccccchhh
Confidence 34444444
No 331
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=23.15 E-value=45 Score=28.29 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041765 91 SVLRAQLLELTQRLDSLND 109 (163)
Q Consensus 91 ~~Lraql~eL~~rl~~l~~ 109 (163)
..|.+++..|..++..|..
T Consensus 28 ~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 28 NSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544443
No 332
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=23.03 E-value=1.1e+02 Score=17.12 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 041765 58 LIAQVDQLR 66 (163)
Q Consensus 58 Le~qv~~L~ 66 (163)
|+.++..|+
T Consensus 6 lekkcaale 14 (31)
T 3ljm_A 6 LEKKCAALE 14 (31)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 333
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=22.83 E-value=2e+02 Score=22.05 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041765 49 MRKQKHLDDLIAQVDQL 65 (163)
Q Consensus 49 ~RKq~~l~eLe~qv~~L 65 (163)
++|+++|.+|..|...+
T Consensus 22 ~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 22 KQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56889999998775544
No 334
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.62 E-value=1.9e+02 Score=21.00 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 74 TSVNITTQHYMNIESENSVLRAQLLELTQRLDSLNDILNFI 114 (163)
Q Consensus 74 ~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l~~il~~~ 114 (163)
.....+.++...++.+...|...+..|...+..+..++..-
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 135 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSA 135 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33455666777777788888888888888888888877553
No 335
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=22.17 E-value=2.2e+02 Score=20.31 Aligned_cols=44 Identities=11% Similarity=0.221 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 64 QLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 64 ~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
.|+.--.+|...|..+...--.++.....-.-+|.+|..++..|
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 34444455555555554444444444444444455555554433
No 336
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.82 E-value=1.9e+02 Score=19.52 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041765 91 SVLRAQLLELTQRLDSL 107 (163)
Q Consensus 91 ~~Lraql~eL~~rl~~l 107 (163)
..|.+++..|...+..|
T Consensus 66 ~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 66 LDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 337
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=21.78 E-value=1.9e+02 Score=19.53 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 75 SVNITTQHYMNIESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 75 ~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~l 107 (163)
.+..-.+-++.|-.|--.|--+-.-|++||..+
T Consensus 40 ~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 40 VIALKNKNTERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 333334444444444444444444555554433
No 338
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=21.53 E-value=2.5e+02 Score=20.75 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 55 LDDLIAQVDQLRK-ENNQILTSVNITTQHYMN-IESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 55 l~eLe~qv~~L~~-EN~~L~~~i~~l~~~~~~-l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
++.|+.++..|+. +...+...+......-.- -.+|-..-|.+...+..|+..|...|..+..
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~v 74 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQV 74 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhCee
Confidence 4456666666655 333444444332211100 0123334566677777888888888887654
No 339
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=21.52 E-value=2.6e+02 Score=20.94 Aligned_cols=36 Identities=11% Similarity=-0.018 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 62 VDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 62 v~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
+..|..-|..|..++..-.+-...|+.=....++++
T Consensus 81 ~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l 116 (152)
T 4fla_A 81 CLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVL 116 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333333333333333
No 340
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=21.33 E-value=1.8e+02 Score=19.03 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041765 92 VLRAQLLELTQRLDSLND 109 (163)
Q Consensus 92 ~Lraql~eL~~rl~~l~~ 109 (163)
.++.++..|..+...|..
T Consensus 82 ~i~~~l~~l~~rw~~L~~ 99 (119)
T 3uun_A 82 EVQEQMNLLNSRWECLRV 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 341
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=21.30 E-value=1.8e+02 Score=21.76 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 041765 96 QLLELTQRLDSLN 108 (163)
Q Consensus 96 ql~eL~~rl~~l~ 108 (163)
++..+..+|..+.
T Consensus 15 ~~~~~~~~~~~~~ 27 (192)
T 2gkw_A 15 MLSVHDIRLADMD 27 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 342
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.26 E-value=2.1e+02 Score=19.77 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=5.2
Q ss_pred HhHHHHHHHH
Q 041765 39 SNRESARRSR 48 (163)
Q Consensus 39 sNReSARRSR 48 (163)
.-||+|+.-+
T Consensus 23 gKrEaA~Ee~ 32 (84)
T 1gmj_A 23 GKREQAEEER 32 (84)
T ss_dssp HHHHHHHHHH
T ss_pred ccHHHHhHHH
Confidence 3456665544
No 343
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=21.24 E-value=2e+02 Score=19.60 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041765 53 KHLDDLIAQVDQLRKENNQILTSVNITTQHY 83 (163)
Q Consensus 53 ~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~ 83 (163)
+.+.+|...|..|++|...--.++..+.--+
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLc 38 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELIC 38 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777666555554444333
No 344
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=21.22 E-value=3.1e+02 Score=21.76 Aligned_cols=47 Identities=11% Similarity=0.032 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQL 97 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql 97 (163)
+.+.+.+....+-+..+||..|..+...+++.+.-...-..+|.-++
T Consensus 113 ~~q~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v 159 (214)
T 2cly_A 113 SQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHI 159 (214)
T ss_dssp HHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445567777777777766666655555555555444
No 345
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=21.12 E-value=2.5e+02 Score=22.80 Aligned_cols=40 Identities=8% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 041765 62 VDQLRKENNQILTSVNITTQHYMNIESENSVLRAQ---LLELT 101 (163)
Q Consensus 62 v~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraq---l~eL~ 101 (163)
...++..-..+..++..+.++...+..+...|..+ +..|.
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
No 346
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=20.87 E-value=2e+02 Score=19.36 Aligned_cols=46 Identities=28% Similarity=0.541 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 54 HLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESENSVLRAQLLELTQRLDS 106 (163)
Q Consensus 54 ~l~eLe~qv~~L~~EN~~L~~~i~~l~~~~~~l~~EN~~Lraql~eL~~rl~~ 106 (163)
.+.++..+++.|..--+-+..++ +.++.+-..|...+..+..|+..
T Consensus 22 EI~EID~Ki~nL~~mR~ivldRl-------A~lEqdE~~LE~~l~~i~~rle~ 67 (72)
T 2xu6_A 22 EIRDIEVEVENLRQKKEKLLGKI-------ANIEQNQLMLEDNLKQIDDRLDF 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHH
Confidence 44555555555554444444444 44444444444444444444433
No 347
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=20.81 E-value=2.8e+02 Score=25.64 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041765 51 KQKHLDDLIAQVDQLRKENNQI 72 (163)
Q Consensus 51 Kq~~l~eLe~qv~~L~~EN~~L 72 (163)
+-..+++++.++.+++.+-..|
T Consensus 399 ~p~~l~~~~~~~~~~~~~~~~~ 420 (854)
T 1qvr_A 399 APEEIDALERKKLQLEIEREAL 420 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHH
Confidence 3455667777766666654443
No 348
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=20.31 E-value=1.2e+02 Score=24.45 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=22.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 33 KRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQIL 73 (163)
Q Consensus 33 k~rR~lsNReSARRSR~RKq~~l~eLe~qv~~L~~EN~~L~ 73 (163)
+.|.+..-...+.-+-.-|++++.+++.++..|+.....|.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (321)
T 3p7i_A 271 LFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALS 311 (321)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344555667777777777777665554443
No 349
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.29 E-value=1.3e+02 Score=26.12 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041765 86 IESENSVLRAQLLELTQRLDSL 107 (163)
Q Consensus 86 l~~EN~~Lraql~eL~~rl~~l 107 (163)
|+++...|..++..++.++..|
T Consensus 44 l~~~~~~l~~~~~~~~~e~~~l 65 (405)
T 4b4t_J 44 LEAQRNALNDKVRFIKDELRLL 65 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555444433
No 350
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=20.16 E-value=2.5e+02 Score=20.30 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041765 86 IESENSVLRAQLLELTQRLDSLNDILNFINT 116 (163)
Q Consensus 86 l~~EN~~Lraql~eL~~rl~~l~~il~~~~~ 116 (163)
|...-..|.+++.+|+..+..+..++..+..
T Consensus 85 L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~ 115 (146)
T 3hh0_A 85 MHFQREVLLAEQERIAKVLSHMDEMTKKFQK 115 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555666666676667777776666654
No 351
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=20.08 E-value=1.9e+02 Score=18.69 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041765 82 HYMNIESENSVLRAQLLELTQRLDSLNDIL 111 (163)
Q Consensus 82 ~~~~l~~EN~~Lraql~eL~~rl~~l~~il 111 (163)
....|...-..|..++.+..+++.-|+.+|
T Consensus 19 ~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 19 MNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444
No 352
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.03 E-value=2.6e+02 Score=21.77 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041765 46 RSRMRKQKHLDDLIAQVDQLRKENNQILTS 75 (163)
Q Consensus 46 RSR~RKq~~l~eLe~qv~~L~~EN~~L~~~ 75 (163)
++-.+-++.++.||.++...+.++..+...
T Consensus 135 rtV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555655555555555554444
Done!