Your job contains 1 sequence.
>041767
MICRSVCKLFNQILTSSSFIHLISTQKPPLSLLALRPPHHQRHVSHSAAALHVYDPNQNQ
WLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAW
SKHGSVLVDSLNKVMVLTELAALFFSNSNHWLKFSSNLPSKPRSPILMLNSVYALCDVGS
PWRSQWKLFCCNLSSLTNSQQFWHCLERREWGDVFDILKRPRLVRGVGNRILMIGGLKSS
FTLNASCSTILILRLDLDLLEWEEAGRMPVEMYRCFSESSKFKVFGMGDKVCFSAKRVGR
LALWECEKGGGGEWRWIDGLPGIGDGPCRGFVYEASLNALP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041767
(341 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2025247 - symbol:AT1G76920 "AT1G76920" species... 1237 6.1e-126 1
TAIR|locus:2143256 - symbol:AT5G15710 "AT5G15710" species... 125 5.6e-05 1
TAIR|locus:2015766 - symbol:UFO "AT1G30950" species:3702 ... 120 0.00020 1
>TAIR|locus:2025247 [details] [associations]
symbol:AT1G76920 "AT1G76920" species:3702 "Arabidopsis
thaliana" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006869 "lipid
transport" evidence=RCA] [GO:0048767 "root hair elongation"
evidence=RCA] InterPro:IPR001810 InterPro:IPR011498
InterPro:IPR015915 Pfam:PF00646 Pfam:PF07646 PROSITE:PS50181
SMART:SM00256 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 SUPFAM:SSF81383
GO:GO:0016567 Gene3D:2.120.10.80 EMBL:AC002291 EMBL:AY065102
EMBL:BT008455 EMBL:AY085473 IPI:IPI00535488 PIR:A96798
RefSeq:NP_565142.1 UniGene:At.21630 UniGene:At.67164
ProteinModelPortal:O49279 SMR:O49279 IntAct:O49279 STRING:O49279
ProMEX:O49279 EnsemblPlants:AT1G76920.1 GeneID:844027
KEGG:ath:AT1G76920 TAIR:At1g76920 eggNOG:NOG324999
HOGENOM:HOG000241138 InParanoid:O49279 OMA:VGSPWRS PhylomeDB:O49279
ProtClustDB:CLSN2689248 Genevestigator:O49279 Uniprot:O49279
Length = 374
Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
Identities = 234/353 (66%), Positives = 280/353 (79%)
Query: 1 MICRSVCKLFNQILTSSSFIHLISTQKPPLSLLALRPPHHQ---RHVSHSAAA-----LH 52
MICRSVCK FNQ+LTS FI +IST +PPL+LLALRPPHH RH + A +H
Sbjct: 27 MICRSVCKFFNQLLTSQCFIEIIST-RPPLNLLALRPPHHHHSHRHSGNGHATNIRPYIH 85
Query: 53 VYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRV 112
VYDP QNQW RF+L FLPFRS PVASS GLIYLWGD D ES+KSL+ACNPLTR ++V
Sbjct: 86 VYDPEQNQWFRFNLDFLPFRSPQPVASSSGLIYLWGDSIDLAESSKSLVACNPLTRQFKV 145
Query: 113 LPQLGSAWSKHGSVLVDSLNKVMVLTELAALFFSNS---NHWLKFSSNLPSKPRSPILML 169
LPQLGSAWS+HG+VLVDS+N+VMVLTELAAL++S + N WLKFSSNLPSKPRSP+LM
Sbjct: 146 LPQLGSAWSRHGTVLVDSVNRVMVLTELAALYYSGTVVANQWLKFSSNLPSKPRSPVLMS 205
Query: 170 NSVYALCDVGSPWRSQWKLFCCNLSSLTNSQQFWHCLERREWGDVFDILKRPRLVRGVGN 229
+SV+ALCDVGSPWRSQWKLF C L++LT + W CLE+ EWGD+FDI+KRPRL+RG G+
Sbjct: 206 SSVFALCDVGSPWRSQWKLFSCKLTNLTITHTNWVCLEKHEWGDIFDIIKRPRLLRGNGD 265
Query: 230 -RILMIGGLKSSFTLNASCSTXXXXXXXXXXXEWEEAGRMPVEMYRCFSESSKFKVFGMG 288
++LMIGGLKS+F+LN +CST EWEEAGRMP+EMYR F ESSKFKVFG G
Sbjct: 266 SKLLMIGGLKSTFSLNPACSTILILRLDLESLEWEEAGRMPLEMYRGFQESSKFKVFGGG 325
Query: 289 DKVCFSAKRVGRLALWECEKGGGGEWRWIDGLPGIGDGPCRGFVYEASLNALP 341
D+V FSAKR+G+LA+W+C +G WRWI+G+PG DG CRGFV++A L +P
Sbjct: 326 DRVYFSAKRMGKLAMWDCWQG----WRWIEGVPGYADGLCRGFVFDAKLTLMP 374
>TAIR|locus:2143256 [details] [associations]
symbol:AT5G15710 "AT5G15710" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001810 Pfam:PF00646 PROSITE:PS50181
SMART:SM00256 EMBL:CP002688 GenomeReviews:BA000015_GR
SUPFAM:SSF81383 Gene3D:2.130.10.80 InterPro:IPR015916 EMBL:AL391144
EMBL:AK229249 EMBL:BT011243 EMBL:BT012539 IPI:IPI00543903
PIR:T51400 RefSeq:NP_197075.1 UniGene:At.31763
ProteinModelPortal:Q9LFV5 SMR:Q9LFV5 STRING:Q9LFV5
EnsemblPlants:AT5G15710.1 GeneID:831425 KEGG:ath:AT5G15710
TAIR:At5g15710 eggNOG:NOG262508 HOGENOM:HOG000005882
InParanoid:Q9LFV5 OMA:SKMAFCD PhylomeDB:Q9LFV5
ProtClustDB:CLSN2687485 Genevestigator:Q9LFV5 Uniprot:Q9LFV5
Length = 448
Score = 125 (49.1 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 73/318 (22%), Positives = 125/318 (39%)
Query: 4 RSVCKLFNQILTSSSFIHL---ISTQKPPLSLLALRPPHHQRHVSHSAAALHVYDPNQNQ 60
RSVCK +N IL +SF+ +S+ P L P + V+
Sbjct: 128 RSVCKKWNLILQDNSFLKFHSNVSSHGPCLLTFWKNSPQIPQ--------CSVFSLPLKT 179
Query: 61 WLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAW 120
W + +FLP + V SS GL+ G L + ++L+ CNPL + +R LP +
Sbjct: 180 WYKIPFTFLPPWAFWLVGSSGGLVCFSG-LDGL--TFRTLV-CNPLMQSWRTLPSMHYNQ 235
Query: 121 SKHGSVLVDSLNKVMVLTELAALFFSNSNHWLKFSSNLPSKPRSPIL----MLNSVYALC 176
+ ++VD +K + + ++ S + S I+ + +S A C
Sbjct: 236 QRQLIMVVDRSDKSFKVIATSDIYGDKSLPTEVYDSKTDKWSLHQIMPAVNLCSSKMAYC 295
Query: 177 DVGSPWRSQWKLFCCNLSSLTNSQQFWHCLERREWGDVFDILKRPRL----VRGVGNRIL 232
D +L+ LS L + L+ +W + R L V G R+
Sbjct: 296 DS--------RLYLETLSPLG---LMMYRLDSGQWEHIPAKFPRSLLDGYLVAGTQKRLF 344
Query: 233 MIGGLKSSFTLNASCSTXXXXXXXXXXXEWEEAGRMPVEMYRCFSESS--KFKVFGMGDK 290
++G + TL + W E RMP + +R S +F+ FG +
Sbjct: 345 LVGRIGLYSTLQSM----RIWELDHTKVSWVEISRMPPKYFRALLRLSAERFECFGQDNL 400
Query: 291 VCFSAKRVGRLALWECEK 308
+CF++ G+ L+ +K
Sbjct: 401 ICFTSWNQGKGLLYNVDK 418
>TAIR|locus:2015766 [details] [associations]
symbol:UFO "AT1G30950" species:3702 "Arabidopsis
thaliana" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISS;IMP] [GO:0005634 "nucleus" evidence=ISM] [GO:0000151
"ubiquitin ligase complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=RCA;TAS] [GO:0031146 "SCF-dependent
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IGI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] InterPro:IPR001810 Pfam:PF00646 PROSITE:PS50181
SMART:SM00256 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0030154 GO:GO:0006355
GO:GO:0006351 SUPFAM:SSF81383 GO:GO:0009908 GO:GO:0004842
GO:GO:0031146 EMBL:AC000107 EMBL:X89224 EMBL:DQ056469
IPI:IPI00521563 PIR:S57710 RefSeq:NP_564368.1 UniGene:At.51845
ProteinModelPortal:Q39090 SMR:Q39090 IntAct:Q39090 STRING:Q39090
EnsemblPlants:AT1G30950.1 GeneID:839982 KEGG:ath:AT1G30950
TAIR:At1g30950 eggNOG:NOG303383 HOGENOM:HOG000084155
InParanoid:Q39090 OMA:VEIERMP PhylomeDB:Q39090
ProtClustDB:CLSN2688127 ArrayExpress:Q39090 Genevestigator:Q39090
GermOnline:AT1G30950 Uniprot:Q39090
Length = 442
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 83/348 (23%), Positives = 139/348 (39%)
Query: 4 RSVCKLFNQILTSSSFIHLISTQKPPLS----LL----ALRPPHHQRHVSH----SAAAL 51
R VCK F +L S++F+ Q PL L L+ ++R ++ + A
Sbjct: 71 RCVCKRFYSLLFSNTFLETY-LQLLPLRHNCFLFFKHKTLKSYIYKRGGTNDDDSNKAEG 129
Query: 52 HVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESN-KSLIACNPLTRLY 110
++DPN+ +W R +++P +P SS GL+ W S E+ K+++ CNPL
Sbjct: 130 FLFDPNEIRWYRLSFAYIP-SGFYPSGSSGGLVS-WV----SEEAGLKTILLCNPLVGSV 183
Query: 111 RVLPQLGSA--WSKHG-SVLVDSLNKVMVLTELAALFFSNSNHWLKFSSNLPSKPRSPIL 167
LP + + G SV S++ + +L + + + F + S
Sbjct: 184 SQLPPISRPRLFPSIGLSVTPTSIDVTVAGDDLISPYAVKNLSSESFHVDAGGF-FSLWA 242
Query: 168 MLNSVYALCDV--GSPWRSQWKLFCCNLSSLTNSQQFWHCLERREW----GDVFDILKRP 221
M +S+ LC + G Q K +C N S S + R W + L+ P
Sbjct: 243 MTSSLPRLCSLESGKMVYVQGKFYCMNYSPF--SVLSYEVTGNR-WIKIQAPMRRFLRSP 299
Query: 222 RLVRGVGNRILMIGGLKSSFTLNASCSTXXXXXXXXXXXEWEEAGRMPVEMYRCFS--ES 279
L+ G R++++ ++ S LN S W E RMP +Y F+ E
Sbjct: 300 SLLESKG-RLILVAAVEKS-KLNVPKSLRLWSLQQDNAT-WVEIERMPQPLYTQFAAEEG 356
Query: 280 SK-FKVFGMGDKVCFSAKRVGRLALWECEKGGGGEWRWIDGLPGIGDG 326
K F+ G + V + L++ + W W+ P G G
Sbjct: 357 GKGFECVGNQEFVMIVLRGTSLQLLFDIVRKS---WLWVPPCPYSGSG 401
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.455 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 341 330 0.00089 116 3 11 22 0.49 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 625 (66 KB)
Total size of DFA: 278 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.89u 0.24s 27.13t Elapsed: 00:00:01
Total cpu time: 26.89u 0.24s 27.13t Elapsed: 00:00:01
Start: Sat May 11 04:30:42 2013 End: Sat May 11 04:30:43 2013