BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041767
         (341 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 16/81 (19%)

Query: 75  HPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWSKHGSVLV----DS 130
           HP   + GLI      PD+P+          L R+ R   ++ SA  + G+V+V    ++
Sbjct: 628 HPALEAGGLIQFQPKFPDAPQ----------LERMVR--GRIRSARREGGTVMVGVIFEA 675

Query: 131 LNKVMVLTELAALFFSNSNHW 151
              + V   +A L F  S HW
Sbjct: 676 GQPIAVRETVAYLIFGESAHW 696


>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
           Molecular Based On A Co-crystallization
 pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
           Molecular
          Length = 309

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 46  HSAAALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNK--SLIAC 103
            S + L  Y+P+   WLR     +P   L       GL+Y  G   +SP+ N   S + C
Sbjct: 37  QSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVG-GLLYAVGGRNNSPDGNTDSSALDC 95

Query: 104 -NPLT 107
            NP+T
Sbjct: 96  YNPMT 100


>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
 pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
          Length = 308

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 46  HSAAALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNK--SLIAC 103
            S + L  Y+P+   WLR     +P   L       GL+Y  G   +SP+ N   S + C
Sbjct: 36  QSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVG-GLLYAVGGRNNSPDGNTDSSALDC 94

Query: 104 -NPLT 107
            NP+T
Sbjct: 95  YNPMT 99


>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
           Somatic Mutations In The Repression Activity Of Keap1 On
           Nrf2
 pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
           Somatic Mutations In The Repression Activity Of Keap1 On
           Nrf2
          Length = 316

 Score = 28.9 bits (63), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 46  HSAAALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNK--SLIAC 103
            S + L  Y+P+   WLR     +P   L       GL+Y  G   +SP+ N   S + C
Sbjct: 29  QSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVG-GLLYAVGGRNNSPDGNTDSSALDC 87

Query: 104 -NPLT 107
            NP+T
Sbjct: 88  YNPMT 92


>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
           The N-Terminal Region Of The Nrf2 Transcription Factor
 pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
           Alpha
 pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
           1P62
          Length = 318

 Score = 28.9 bits (63), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 46  HSAAALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNK--SLIAC 103
            S + L  Y+P+   WLR     +P   L       GL+Y  G   +SP+ N   S + C
Sbjct: 30  QSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVG-GLLYAVGGRNNSPDGNTDSSALDC 88

Query: 104 -NPLT 107
            NP+T
Sbjct: 89  YNPMT 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,462,779
Number of Sequences: 62578
Number of extensions: 412325
Number of successful extensions: 877
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 13
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)