Query 041767
Match_columns 341
No_of_seqs 149 out of 1810
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 2.9E-29 6.3E-34 239.8 24.1 239 48-322 300-557 (571)
2 PHA02713 hypothetical protein; 100.0 5.4E-28 1.2E-32 231.9 22.1 250 50-321 273-544 (557)
3 KOG4441 Proteins containing BT 99.9 3E-24 6.5E-29 205.4 19.1 194 48-268 348-556 (571)
4 PHA03098 kelch-like protein; P 99.9 1.6E-22 3.5E-27 195.1 22.6 240 51-323 266-524 (534)
5 PHA02790 Kelch-like protein; P 99.9 3.1E-22 6.8E-27 189.5 22.1 195 77-317 267-477 (480)
6 PHA02713 hypothetical protein; 99.9 7.8E-23 1.7E-27 196.4 17.6 190 49-267 320-542 (557)
7 TIGR03547 muta_rot_YjhT mutatr 99.9 4.2E-21 9.1E-26 175.3 21.7 229 77-322 13-310 (346)
8 PHA02790 Kelch-like protein; P 99.9 2.4E-21 5.2E-26 183.5 19.2 179 49-265 287-477 (480)
9 PLN02153 epithiospecifier prot 99.9 2.7E-20 5.8E-25 169.6 23.8 239 56-318 4-292 (341)
10 PLN02153 epithiospecifier prot 99.9 1.8E-19 4E-24 164.1 22.8 240 49-307 50-339 (341)
11 PLN02193 nitrile-specifier pro 99.8 3.5E-19 7.7E-24 168.3 24.9 234 51-320 139-420 (470)
12 PHA03098 kelch-like protein; P 99.8 7E-20 1.5E-24 176.8 19.9 199 49-271 311-524 (534)
13 TIGR03548 mutarot_permut cycli 99.8 5.1E-19 1.1E-23 160.0 21.0 221 50-297 40-312 (323)
14 TIGR03547 muta_rot_YjhT mutatr 99.8 8.5E-19 1.8E-23 160.2 22.6 223 49-297 29-330 (346)
15 PRK14131 N-acetylneuraminic ac 99.8 8.2E-19 1.8E-23 161.6 20.7 231 76-322 33-332 (376)
16 PRK14131 N-acetylneuraminic ac 99.8 2.4E-18 5.1E-23 158.6 23.3 241 50-316 51-374 (376)
17 TIGR03548 mutarot_permut cycli 99.8 2E-18 4.3E-23 156.1 22.4 214 77-322 9-291 (323)
18 PLN02193 nitrile-specifier pro 99.8 4.3E-17 9.3E-22 154.2 21.8 200 49-269 193-421 (470)
19 TIGR01640 F_box_assoc_1 F-box 99.7 4E-16 8.6E-21 134.2 20.8 200 77-307 1-228 (230)
20 KOG4693 Uncharacterized conser 99.7 7.7E-15 1.7E-19 122.0 17.1 229 47-297 42-311 (392)
21 KOG4693 Uncharacterized conser 99.3 3.9E-11 8.5E-16 100.1 10.9 176 47-238 103-312 (392)
22 KOG0379 Kelch repeat-containin 99.2 1.5E-09 3.4E-14 102.8 16.8 198 50-269 89-312 (482)
23 KOG0379 Kelch repeat-containin 99.1 1.1E-08 2.5E-13 97.0 18.1 218 71-321 61-312 (482)
24 KOG1230 Protein containing rep 99.0 1.2E-08 2.5E-13 90.4 14.0 199 98-317 98-347 (521)
25 PF13964 Kelch_6: Kelch motif 98.7 3.5E-08 7.5E-13 62.9 5.6 49 71-120 2-50 (50)
26 KOG1230 Protein containing rep 98.6 1.3E-06 2.7E-11 77.8 14.7 203 47-265 96-347 (521)
27 KOG4152 Host cell transcriptio 98.5 1.9E-06 4.1E-11 78.7 13.1 226 59-318 17-310 (830)
28 PF01344 Kelch_1: Kelch motif; 98.2 6.3E-07 1.4E-11 56.2 1.7 45 72-117 3-47 (47)
29 PF13964 Kelch_6: Kelch motif 98.2 2.2E-06 4.8E-11 54.5 4.1 45 221-271 5-49 (50)
30 PLN03215 ascorbic acid mannose 98.1 0.00047 1E-08 62.5 19.0 83 221-308 250-347 (373)
31 COG3055 Uncharacterized protei 98.1 7.1E-05 1.5E-09 65.9 12.3 182 58-273 69-270 (381)
32 PF01344 Kelch_1: Kelch motif; 98.0 2.5E-05 5.4E-10 48.8 6.3 43 221-269 5-47 (47)
33 PF08268 FBA_3: F-box associat 97.9 0.00036 7.9E-09 54.0 11.5 67 199-271 20-94 (129)
34 PF07646 Kelch_2: Kelch motif; 97.8 5.5E-05 1.2E-09 47.7 4.9 44 222-269 6-49 (49)
35 PF07646 Kelch_2: Kelch motif; 97.7 7.3E-05 1.6E-09 47.2 5.0 41 77-117 7-49 (49)
36 PF13415 Kelch_3: Galactose ox 97.7 9.7E-05 2.1E-09 46.6 5.3 46 81-126 1-47 (49)
37 smart00612 Kelch Kelch domain. 97.7 9.3E-05 2E-09 45.9 5.2 44 84-128 2-45 (47)
38 PF13418 Kelch_4: Galactose ox 97.7 8.7E-05 1.9E-09 46.8 5.0 45 221-270 5-49 (49)
39 PF13418 Kelch_4: Galactose ox 97.6 4E-05 8.6E-10 48.4 2.1 47 71-117 2-48 (49)
40 COG3055 Uncharacterized protei 97.5 0.0014 3E-08 58.0 10.7 191 112-321 29-266 (381)
41 PF13415 Kelch_3: Galactose ox 97.3 0.00025 5.3E-09 44.7 3.1 42 228-273 1-42 (49)
42 KOG4152 Host cell transcriptio 97.1 0.01 2.2E-07 55.0 12.6 185 49-239 106-343 (830)
43 smart00612 Kelch Kelch domain. 96.7 0.0016 3.6E-08 40.1 2.8 38 230-273 1-38 (47)
44 PF07893 DUF1668: Protein of u 96.5 0.23 4.9E-06 45.3 16.5 109 49-159 86-220 (342)
45 PF07250 Glyoxal_oxid_N: Glyox 96.4 0.16 3.4E-06 43.7 13.8 149 140-322 47-210 (243)
46 PF07893 DUF1668: Protein of u 96.4 0.047 1E-06 49.8 11.1 122 200-325 87-224 (342)
47 PF07250 Glyoxal_oxid_N: Glyox 96.3 0.071 1.5E-06 45.8 11.2 94 49-147 46-148 (243)
48 PF08450 SGL: SMP-30/Gluconola 95.6 1.3 2.7E-05 38.2 17.9 200 80-318 10-221 (246)
49 PF07734 FBA_1: F-box associat 95.6 0.16 3.5E-06 41.0 9.9 64 200-270 22-95 (164)
50 PF10282 Lactonase: Lactonase, 95.4 2.1 4.6E-05 39.1 19.5 259 49-336 15-302 (345)
51 PLN02772 guanylate kinase 93.8 0.29 6.4E-06 45.0 7.8 62 76-138 29-93 (398)
52 KOG2437 Muskelin [Signal trans 93.7 0.036 7.7E-07 51.4 1.8 116 199-318 288-420 (723)
53 COG4257 Vgb Streptogramin lyas 93.5 1.5 3.3E-05 38.0 11.0 142 49-215 150-313 (353)
54 KOG2437 Muskelin [Signal trans 93.4 0.077 1.7E-06 49.3 3.3 145 56-215 236-420 (723)
55 PLN02772 guanylate kinase 93.3 0.33 7.1E-06 44.7 7.3 76 221-308 28-109 (398)
56 smart00256 FBOX A Receptor for 92.8 0.015 3.3E-07 34.6 -1.4 20 2-21 20-39 (41)
57 PF00646 F-box: F-box domain; 92.2 0.044 9.5E-07 34.0 0.1 22 2-23 25-46 (48)
58 TIGR01640 F_box_assoc_1 F-box 91.4 4.6 0.0001 34.3 11.9 110 200-319 71-186 (230)
59 PF12937 F-box-like: F-box-lik 90.8 0.067 1.5E-06 33.0 -0.1 20 2-21 23-42 (47)
60 PF13854 Kelch_5: Kelch motif 90.4 0.75 1.6E-05 27.5 4.4 34 220-258 7-40 (42)
61 PRK11138 outer membrane biogen 90.1 16 0.00034 34.0 18.2 68 78-153 66-146 (394)
62 PF13854 Kelch_5: Kelch motif 88.8 1 2.2E-05 26.9 4.1 37 70-107 4-41 (42)
63 PF13360 PQQ_2: PQQ-like domai 87.0 17 0.00038 30.5 20.3 90 49-153 3-102 (238)
64 PRK11138 outer membrane biogen 84.5 34 0.00075 31.7 20.7 65 80-153 204-282 (394)
65 COG4257 Vgb Streptogramin lyas 84.0 2.8 6.1E-05 36.4 5.6 63 48-116 253-315 (353)
66 PF08450 SGL: SMP-30/Gluconola 83.2 28 0.00061 29.7 19.7 95 48-154 21-129 (246)
67 COG2706 3-carboxymuconate cycl 80.3 35 0.00077 30.8 11.2 97 199-308 167-275 (346)
68 PF12768 Rax2: Cortical protei 78.3 26 0.00057 31.0 9.9 106 48-156 15-130 (281)
69 PF07433 DUF1513: Protein of u 77.2 54 0.0012 29.3 22.3 232 70-321 4-258 (305)
70 PF10282 Lactonase: Lactonase, 77.2 57 0.0012 29.6 14.7 161 81-266 155-332 (345)
71 TIGR03300 assembly_YfgL outer 75.7 65 0.0014 29.5 12.9 23 131-153 65-91 (377)
72 PF08268 FBA_3: F-box associat 68.2 50 0.0011 25.0 10.2 65 48-112 19-86 (129)
73 PRK11028 6-phosphogluconolacto 67.0 95 0.0021 27.8 25.1 67 249-321 251-317 (330)
74 PRK11028 6-phosphogluconolacto 63.6 1.1E+02 0.0024 27.3 23.0 59 249-308 198-259 (330)
75 PF12458 DUF3686: ATPase invol 62.5 71 0.0015 29.8 9.1 124 98-254 253-382 (448)
76 KOG0289 mRNA splicing factor [ 60.2 1.5E+02 0.0033 27.8 16.7 113 130-271 357-475 (506)
77 PF14870 PSII_BNR: Photosynthe 59.0 1.4E+02 0.0029 26.8 18.1 91 57-156 89-183 (302)
78 PF03022 MRJP: Major royal jel 57.2 38 0.00083 30.0 6.6 90 228-319 11-106 (287)
79 TIGR03300 assembly_YfgL outer 56.9 1.6E+02 0.0034 27.0 20.0 97 49-153 155-267 (377)
80 PF03088 Str_synth: Strictosid 54.2 67 0.0015 22.9 6.1 56 78-137 6-73 (89)
81 KOG0310 Conserved WD40 repeat- 52.4 2.1E+02 0.0046 27.1 12.1 49 97-148 47-99 (487)
82 PF05096 Glu_cyclase_2: Glutam 52.2 73 0.0016 27.8 7.2 69 77-155 50-124 (264)
83 PF13570 PQQ_3: PQQ-like domai 49.4 32 0.00068 19.9 3.3 24 77-107 17-40 (40)
84 PF12768 Rax2: Cortical protei 47.6 2E+02 0.0044 25.4 12.6 123 198-335 15-146 (281)
85 KOG2055 WD40 repeat protein [G 44.9 57 0.0012 30.6 5.6 113 200-338 281-398 (514)
86 KOG4499 Ca2+-binding protein R 43.1 2.2E+02 0.0048 24.6 8.9 51 228-296 222-274 (310)
87 KOG2055 WD40 repeat protein [G 42.4 80 0.0017 29.7 6.2 72 230-320 226-298 (514)
88 PF05096 Glu_cyclase_2: Glutam 41.8 1.6E+02 0.0036 25.7 7.8 65 227-307 54-118 (264)
89 PF06433 Me-amine-dh_H: Methyl 40.0 2.9E+02 0.0064 25.2 14.0 101 97-212 16-131 (342)
90 KOG2321 WD40 repeat protein [G 39.4 2.2E+02 0.0048 27.8 8.7 55 49-111 155-210 (703)
91 PF14781 BBS2_N: Ciliary BBSom 39.2 80 0.0017 24.5 4.9 37 200-237 74-116 (136)
92 smart00564 PQQ beta-propeller 38.5 66 0.0014 17.3 3.7 26 288-315 6-31 (33)
93 PF13360 PQQ_2: PQQ-like domai 36.9 2.2E+02 0.0048 23.6 8.1 101 199-320 46-152 (238)
94 KOG2445 Nuclear pore complex c 33.7 1.3E+02 0.0027 27.0 5.8 38 229-270 184-221 (361)
95 PLN03215 ascorbic acid mannose 33.2 3.5E+02 0.0076 25.1 8.9 33 79-115 93-125 (373)
96 COG4946 Uncharacterized protei 31.1 4.8E+02 0.011 25.0 11.5 96 48-155 286-398 (668)
97 PF07569 Hira: TUP1-like enhan 30.9 2.9E+02 0.0062 23.3 7.6 73 77-156 18-104 (219)
98 PRK13684 Ycf48-like protein; P 30.8 4.1E+02 0.0088 24.1 16.5 56 98-155 152-210 (334)
99 PF13859 BNR_3: BNR repeat-lik 29.9 1.4E+02 0.003 26.9 5.7 63 200-270 150-218 (310)
100 PLN00033 photosystem II stabil 29.2 4.8E+02 0.01 24.4 16.8 91 58-155 165-276 (398)
101 PLN02919 haloacid dehalogenase 29.1 2.5E+02 0.0055 30.1 8.3 68 77-150 810-891 (1057)
102 KOG0281 Beta-TrCP (transducin 28.1 13 0.00027 33.5 -1.1 18 2-19 101-118 (499)
103 KOG0292 Vesicle coat complex C 28.0 2E+02 0.0042 29.9 6.6 52 249-308 229-281 (1202)
104 TIGR02276 beta_rpt_yvtn 40-res 25.8 1.3E+02 0.0028 17.0 3.4 20 288-307 3-22 (42)
105 PF15525 DUF4652: Domain of un 25.2 4E+02 0.0086 22.1 7.3 71 47-117 86-159 (200)
106 KOG0639 Transducin-like enhanc 24.8 2.4E+02 0.0051 27.2 6.2 27 220-257 470-496 (705)
107 KOG0286 G-protein beta subunit 24.7 3.2E+02 0.007 24.4 6.7 51 97-149 76-129 (343)
108 PF01011 PQQ: PQQ enzyme repea 24.6 1.2E+02 0.0027 17.2 3.0 28 289-318 1-28 (38)
109 COG3823 Glutamine cyclotransfe 24.5 2.6E+02 0.0057 23.7 5.8 70 224-308 51-120 (262)
110 PF06433 Me-amine-dh_H: Methyl 21.6 1.9E+02 0.0041 26.4 4.9 57 47-111 267-325 (342)
111 KOG1036 Mitotic spindle checkp 20.7 6.2E+02 0.013 22.7 8.3 27 281-308 137-164 (323)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=2.9e-29 Score=239.80 Aligned_cols=239 Identities=17% Similarity=0.272 Sum_probs=182.7
Q ss_pred CceEEEeeCCCCcEEEeeCCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCCceeEEEE
Q 041767 48 AAALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWSKHGSVL 127 (341)
Q Consensus 48 ~~~~~~yd~~~~~W~~l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~ 127 (341)
...+.+|||.++.|..+..+..++..+. +++.+|.||+.||...+....+.+++|||.+++|..+|||...|..++.++
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~r~~~~-~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSPRCRVG-VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred cceeEEecCCcCcEeecCCCCccccccc-EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 4668899999999999986555655554 899999999999974234567899999999999999999999998888666
Q ss_pred EcCCCcEEEEcC--------eEEEEEcCCCccccccccCCCCCCCcc---cccCceEEEeecCCCcCCcceeeEeecccC
Q 041767 128 VDSLNKVMVLTE--------LAALFFSNSNHWLKFSSNLPSKPRSPI---LMLNSVYALCDVGSPWRSQWKLFCCNLSSL 196 (341)
Q Consensus 128 ~~~~~ki~~~g~--------~~evYd~~t~~W~~~~~~~p~~~r~~~---~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~ 196 (341)
. +++||++|+ ++|+||+.+|+|..++ +|+. +|..+ ...+.+|++ ||. .. ...
T Consensus 379 l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~-~r~~~gv~~~~g~iYi~--GG~---------~~--~~~ 441 (571)
T KOG4441|consen 379 L--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLT-RRSGHGVAVLGGKLYII--GGG---------DG--SSN 441 (571)
T ss_pred E--CCEEEEEeccccccccccEEEecCCCCcccccC-CCCc-ceeeeEEEEECCEEEEE--cCc---------CC--Ccc
Confidence 6 799999983 6999999999999999 4884 44432 345677876 331 11 111
Q ss_pred CCCceeEEEccccccccccccc---CCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHHHH
Q 041767 197 TNSQQFWHCLERREWGDVFDIL---KRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMY 273 (341)
Q Consensus 197 ~~~~v~~yD~~~~~W~~~~~~~---~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~ 273 (341)
...++++|||.+++|+.++++. ....++. .+|+||++||.++. ...++ |..|||++++|+.++.|+.++.
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~----~~~~~--VE~ydp~~~~W~~v~~m~~~rs 514 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGT----SALSS--VERYDPETNQWTMVAPMTSPRS 514 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCC----Cccce--EEEEcCCCCceeEcccCccccc
Confidence 2357999999999999998543 2344555 49999999998763 12233 6688999999999999987744
Q ss_pred HhhcCCCceEEEecCCEEEEEEcc-----cCcEEEEEeeeCCCCeeEEcCCCCC
Q 041767 274 RCFSESSKFKVFGMGDKVCFSAKR-----VGRLALWECEKGGGGEWRWIDGLPG 322 (341)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yD~~~~~~~~W~~~~~~~~ 322 (341)
. ..++..++++|+.++. .+.+.+||+. +++|+.++. |.
T Consensus 515 ~-------~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~---~d~W~~~~~-~~ 557 (571)
T KOG4441|consen 515 A-------VGVVVLGGKLYAVGGFDGNNNLNTVECYDPE---TDTWTEVTE-PE 557 (571)
T ss_pred c-------ccEEEECCEEEEEecccCccccceeEEcCCC---CCceeeCCC-cc
Confidence 3 2455567777776643 3679999999 999999999 54
No 2
>PHA02713 hypothetical protein; Provisional
Probab=99.96 E-value=5.4e-28 Score=231.94 Aligned_cols=250 Identities=11% Similarity=0.131 Sum_probs=175.6
Q ss_pred eEEEeeCCCCcEEEeeCCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCCceeEEEEEc
Q 041767 50 ALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWSKHGSVLVD 129 (341)
Q Consensus 50 ~~~~yd~~~~~W~~l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~~~ 129 (341)
.+..||+.+++|..++.+..++..+. +++.+|.||+.||........+.+++|||.+++|..+|||+.+|..+++++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~-~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~- 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYA-SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI- 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceE-EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-
Confidence 46889999999999875434544454 7788999999998521222357899999999999999999988877776665
Q ss_pred CCCcEEEEcC--------eEEEEEcCCCccccccccCCCCCCCc--ccccCceEEEeecCCCcCCcc---eeeEe---ec
Q 041767 130 SLNKVMVLTE--------LAALFFSNSNHWLKFSSNLPSKPRSP--ILMLNSVYALCDVGSPWRSQW---KLFCC---NL 193 (341)
Q Consensus 130 ~~~ki~~~g~--------~~evYd~~t~~W~~~~~~~p~~~r~~--~~~~~~~y~~~~~G~~~~~~~---~~~~~---~~ 193 (341)
+++||++|+ .+|+||+.+++|+.++ +||..+... +..++.+|++ ||......+ ..... ..
T Consensus 351 -~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~-~mp~~r~~~~~~~~~g~IYvi--GG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 -DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP-DMPIALSSYGMCVLDQYIYII--GGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred -CCEEEEECCcCCCCCCceEEEEECCCCeEEECC-CCCcccccccEEEECCEEEEE--eCCCcccccccccccccccccc
Confidence 789999984 5999999999999998 488432221 2345678887 341100000 00000 00
Q ss_pred ccCCCCceeEEEccccccccccccc---CCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCC-CcEEEeccCC
Q 041767 194 SSLTNSQQFWHCLERREWGDVFDIL---KRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDL-LEWEEAGRMP 269 (341)
Q Consensus 194 ~~~~~~~v~~yD~~~~~W~~~~~~~---~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~-~~W~~~~~mp 269 (341)
.....+.+++|||++++|+.++++. ..+.++++ +|+||++||..+. ..... .|..|||++ ++|+.+++||
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~-~~~IYv~GG~~~~---~~~~~--~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH-KDDIYVVCDIKDE---KNVKT--CIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCcEEEE-CCEEEEEeCCCCC---Cccce--eEEEecCCCCCCeeEccccC
Confidence 0011246999999999999887432 23556664 8999999997542 11111 356889998 7999999999
Q ss_pred HHHHHhhcCCCceEEEecCCEEEEEEccc--CcEEEEEeeeCCCCeeEEcCCCC
Q 041767 270 VEMYRCFSESSKFKVFGMGDKVCFSAKRV--GRLALWECEKGGGGEWRWIDGLP 321 (341)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~v~~yD~~~~~~~~W~~~~~~~ 321 (341)
.++.. ..++..+++||+.++.. ..+.+||+. +++|+.+.+..
T Consensus 501 ~~r~~-------~~~~~~~~~iyv~Gg~~~~~~~e~yd~~---~~~W~~~~~~~ 544 (557)
T PHA02713 501 SRLSA-------LHTILHDNTIMMLHCYESYMLQDTFNVY---TYEWNHICHQH 544 (557)
T ss_pred ccccc-------ceeEEECCEEEEEeeecceeehhhcCcc---cccccchhhhc
Confidence 87543 24556678999887643 368999999 99999887653
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.92 E-value=3e-24 Score=205.44 Aligned_cols=194 Identities=20% Similarity=0.320 Sum_probs=150.8
Q ss_pred CceEEEeeCCCCcEEEeeCCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCCceeEEEE
Q 041767 48 AAALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWSKHGSVL 127 (341)
Q Consensus 48 ~~~~~~yd~~~~~W~~l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~ 127 (341)
...++.|||.+++|..++.+..++..+. +++++|.||++||. ++.....++..|||.|++|..++||...|..+++++
T Consensus 348 l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~~l~g~iYavGG~-dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~ 425 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTPVAPMNTKRSDFG-VAVLDGKLYAVGGF-DGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV 425 (571)
T ss_pred cceEEEecCCCCceeccCCccCccccce-eEEECCEEEEEecc-ccccccccEEEecCCCCcccccCCCCcceeeeEEEE
Confidence 4678999999999999987777777776 99999999999987 455567889999999999999999988777777666
Q ss_pred EcCCCcEEEEcC---------eEEEEEcCCCccccccccCCCCCCCc---ccccCceEEEeecCCCcCCcceeeEeeccc
Q 041767 128 VDSLNKVMVLTE---------LAALFFSNSNHWLKFSSNLPSKPRSP---ILMLNSVYALCDVGSPWRSQWKLFCCNLSS 195 (341)
Q Consensus 128 ~~~~~ki~~~g~---------~~evYd~~t~~W~~~~~~~p~~~r~~---~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~ 195 (341)
. +++||++|+ ++|+|||.||+|+.++ +|+. +|.. +..++.+|++ || +.. .
T Consensus 426 ~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~-~M~~-~R~~~g~a~~~~~iYvv--GG---------~~~---~ 487 (571)
T KOG4441|consen 426 L--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA-PMNT-RRSGFGVAVLNGKIYVV--GG---------FDG---T 487 (571)
T ss_pred E--CCEEEEEcCcCCCccccceEEEEcCCCCceeecC-Cccc-ccccceEEEECCEEEEE--CC---------ccC---C
Confidence 5 799999983 6999999999999999 4884 4443 2456778887 34 111 1
Q ss_pred CCCCceeEEEcccccccccccc---cCCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccC
Q 041767 196 LTNSQQFWHCLERREWGDVFDI---LKRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRM 268 (341)
Q Consensus 196 ~~~~~v~~yD~~~~~W~~~~~~---~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~m 268 (341)
....+|++|||++++|+.++.+ .....++. .+++||++||.+.. ...++++ .|||++++|+....|
T Consensus 488 ~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~-~~~~ly~vGG~~~~----~~l~~ve--~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 488 SALSSVERYDPETNQWTMVAPMTSPRSAVGVVV-LGGKLYAVGGFDGN----NNLNTVE--CYDPETDTWTEVTEP 556 (571)
T ss_pred CccceEEEEcCCCCceeEcccCccccccccEEE-ECCEEEEEecccCc----cccceeE--EcCCCCCceeeCCCc
Confidence 1124699999999999998632 22345566 49999999997553 3345566 459999999999883
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.91 E-value=1.6e-22 Score=195.08 Aligned_cols=240 Identities=12% Similarity=0.170 Sum_probs=167.0
Q ss_pred EEEeeCCCCcEEEeeCCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCCceeEEEEEcC
Q 041767 51 LHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWSKHGSVLVDS 130 (341)
Q Consensus 51 ~~~yd~~~~~W~~l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~~~~ 130 (341)
...|++..++|..++.... ...+ .+++.++.||+.||........+.+++|||.|++|..+|+|+.+|..+++++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-- 341 (534)
T PHA03098 266 YITNYSPLSEINTIIDIHY-VYCF-GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-- 341 (534)
T ss_pred eeecchhhhhcccccCccc-cccc-eEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--
Confidence 4468888888988763211 1223 36778999999998632222345799999999999999999888877776655
Q ss_pred CCcEEEEcC--------eEEEEEcCCCccccccccCCCCCCCc---ccccCceEEEeecCCCcCCcceeeEeecccCCCC
Q 041767 131 LNKVMVLTE--------LAALFFSNSNHWLKFSSNLPSKPRSP---ILMLNSVYALCDVGSPWRSQWKLFCCNLSSLTNS 199 (341)
Q Consensus 131 ~~ki~~~g~--------~~evYd~~t~~W~~~~~~~p~~~r~~---~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~~~~ 199 (341)
+++||++|+ .+++||+.+++|+.++ ++|. +|.. +...+.+|++ ||. .. .....+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~lp~-~r~~~~~~~~~~~iYv~--GG~---------~~--~~~~~~ 406 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEP-PLIF-PRYNPCVVNVNNLIYVI--GGI---------SK--NDELLK 406 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCC-CcCc-CCccceEEEECCEEEEE--CCc---------CC--CCcccc
Confidence 689999983 5899999999999988 4773 3432 2244567776 331 00 001124
Q ss_pred ceeEEEcccccccccccc---cCCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHHHHHhh
Q 041767 200 QQFWHCLERREWGDVFDI---LKRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMYRCF 276 (341)
Q Consensus 200 ~v~~yD~~~~~W~~~~~~---~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~~~~ 276 (341)
.++.||+.+++|+.++.. ...+.++. .+++||++||..... .....-.++.||+++++|++++.||.++...
T Consensus 407 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~---~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~- 481 (534)
T PHA03098 407 TVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGISYID---NIKVYNIVESYNPVTNKWTELSSLNFPRINA- 481 (534)
T ss_pred eEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCccCCC---CCcccceEEEecCCCCceeeCCCCCcccccc-
Confidence 689999999999987632 12344555 489999999975421 1000113789999999999999888664321
Q ss_pred cCCCceEEEecCCEEEEEEcc-----cCcEEEEEeeeCCCCeeEEcCCCCCC
Q 041767 277 SESSKFKVFGMGDKVCFSAKR-----VGRLALWECEKGGGGEWRWIDGLPGI 323 (341)
Q Consensus 277 ~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yD~~~~~~~~W~~~~~~~~~ 323 (341)
.++..++.||+.++. ...+.+||+. +++|+.++..|..
T Consensus 482 ------~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~---~~~W~~~~~~p~~ 524 (534)
T PHA03098 482 ------SLCIFNNKIYVVGGDKYEYYINEIEVYDDK---TNTWTLFCKFPKV 524 (534)
T ss_pred ------eEEEECCEEEEEcCCcCCcccceeEEEeCC---CCEEEecCCCccc
Confidence 223346788887653 2568999999 9999999988753
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.90 E-value=3.1e-22 Score=189.51 Aligned_cols=195 Identities=14% Similarity=0.217 Sum_probs=143.4
Q ss_pred eeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCCceeEEEEEcCCCcEEEEcC-----eEEEEEcCCCcc
Q 041767 77 VASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWSKHGSVLVDSLNKVMVLTE-----LAALFFSNSNHW 151 (341)
Q Consensus 77 ~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~~~~~~ki~~~g~-----~~evYd~~t~~W 151 (341)
++..++.||+.||..+ ....+.++.|||.+++|..+|+|+.+|..+++++. +++||++|+ .+|.||+.+|+|
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W 343 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDAAW 343 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE--CCEEEEECCcCCCCceEEEECCCCeE
Confidence 4558899999998622 22356789999999999999999988877665555 789999984 589999999999
Q ss_pred ccccccCCCCCCCc---ccccCceEEEeecCCCcCCcceeeEeecccCCCCceeEEEccccccccccccc---CCccEEE
Q 041767 152 LKFSSNLPSKPRSP---ILMLNSVYALCDVGSPWRSQWKLFCCNLSSLTNSQQFWHCLERREWGDVFDIL---KRPRLVR 225 (341)
Q Consensus 152 ~~~~~~~p~~~r~~---~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~~~~~v~~yD~~~~~W~~~~~~~---~~~~lv~ 225 (341)
..++ +||. +|.. +..+|.+|++ ||. .. . ...+++|||++++|+.++++. ..+.++.
T Consensus 344 ~~~~-~l~~-~r~~~~~~~~~g~IYvi--GG~---------~~--~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~ 405 (480)
T PHA02790 344 VNMP-SLLK-PRCNPAVASINNVIYVI--GGH---------SE--T---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALV 405 (480)
T ss_pred EECC-CCCC-CCcccEEEEECCEEEEe--cCc---------CC--C---CccEEEEeCCCCEEEeCCCCCCccccceEEE
Confidence 9998 4884 3332 2345677876 331 10 1 135899999999999886422 2344555
Q ss_pred EeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHHHHHhhcCCCceEEEecCCEEEEEEcc-----cCc
Q 041767 226 GVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMYRCFSESSKFKVFGMGDKVCFSAKR-----VGR 300 (341)
Q Consensus 226 ~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~ 300 (341)
.+|+||++||. ++ .||+++++|+.+++||.++.. ..++..+++||+.++. ...
T Consensus 406 -~~~~IYv~GG~------------~e--~ydp~~~~W~~~~~m~~~r~~-------~~~~v~~~~IYviGG~~~~~~~~~ 463 (480)
T PHA02790 406 -FGRRLFLVGRN------------AE--FYCESSNTWTLIDDPIYPRDN-------PELIIVDNKLLLIGGFYRGSYIDT 463 (480)
T ss_pred -ECCEEEEECCc------------eE--EecCCCCcEeEcCCCCCCccc-------cEEEEECCEEEEECCcCCCcccce
Confidence 49999999963 13 468899999999999876443 2345557788887653 256
Q ss_pred EEEEEeeeCCCCeeEEc
Q 041767 301 LALWECEKGGGGEWRWI 317 (341)
Q Consensus 301 v~~yD~~~~~~~~W~~~ 317 (341)
+.+||+. +++|+..
T Consensus 464 ve~Yd~~---~~~W~~~ 477 (480)
T PHA02790 464 IEVYNNR---TYSWNIW 477 (480)
T ss_pred EEEEECC---CCeEEec
Confidence 8999999 9999864
No 6
>PHA02713 hypothetical protein; Provisional
Probab=99.90 E-value=7.8e-23 Score=196.39 Aligned_cols=190 Identities=12% Similarity=0.147 Sum_probs=140.9
Q ss_pred ceEEEeeCCCCcEEEeeCCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCCceeEEEEE
Q 041767 49 AALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWSKHGSVLV 128 (341)
Q Consensus 49 ~~~~~yd~~~~~W~~l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~~ 128 (341)
..++.|||.++.|..++.+..++..+. +++.+|.||++||.. +....+.+.+|||.|++|..+|||+.++..+++++.
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~~~-~~~~~g~IYviGG~~-~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~ 397 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCRFS-LAVIDDTIYAIGGQN-GTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL 397 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhcee-EEEECCEEEEECCcC-CCCCCceEEEEECCCCeEEECCCCCcccccccEEEE
Confidence 558899999999999886555665554 888999999999862 222356799999999999999999988877766555
Q ss_pred cCCCcEEEEcC--------------------------eEEEEEcCCCccccccccCCCCCCCc---ccccCceEEEeecC
Q 041767 129 DSLNKVMVLTE--------------------------LAALFFSNSNHWLKFSSNLPSKPRSP---ILMLNSVYALCDVG 179 (341)
Q Consensus 129 ~~~~ki~~~g~--------------------------~~evYd~~t~~W~~~~~~~p~~~r~~---~~~~~~~y~~~~~G 179 (341)
+++||++|+ .+|+||+++|+|+.++ +|+.. |.. +..++.+|++ ||
T Consensus 398 --~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~~-r~~~~~~~~~~~IYv~--GG 471 (557)
T PHA02713 398 --DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWTG-TIRPGVVSHKDDIYVV--CD 471 (557)
T ss_pred --CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC-CCCcc-cccCcEEEECCEEEEE--eC
Confidence 689999873 3889999999999998 48743 322 2356678887 33
Q ss_pred CCcCCcceeeEeecccCCCCceeEEEccc-ccccccccc---cCCccEEEEeCCEEEEEEeeccccccccccceEEEEEE
Q 041767 180 SPWRSQWKLFCCNLSSLTNSQQFWHCLER-REWGDVFDI---LKRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRL 255 (341)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~yD~~~-~~W~~~~~~---~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~ 255 (341)
. .. .......+++|||++ ++|+.++++ .....+++. +|+||++||..+. . .+..|
T Consensus 472 ~---------~~--~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~~~-------~--~~e~y 530 (557)
T PHA02713 472 I---------KD--EKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTIMMLHCYESY-------M--LQDTF 530 (557)
T ss_pred C---------CC--CCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEEEEEeeecce-------e--ehhhc
Confidence 1 10 000012578999999 899987742 223556664 9999999998652 1 24478
Q ss_pred eCCCCcEEEecc
Q 041767 256 DLDLLEWEEAGR 267 (341)
Q Consensus 256 d~~~~~W~~~~~ 267 (341)
|+.+++|+.+++
T Consensus 531 d~~~~~W~~~~~ 542 (557)
T PHA02713 531 NVYTYEWNHICH 542 (557)
T ss_pred Ccccccccchhh
Confidence 999999999874
No 7
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.88 E-value=4.2e-21 Score=175.33 Aligned_cols=229 Identities=13% Similarity=0.140 Sum_probs=145.5
Q ss_pred eeccCCEEEEecCCCCCCCCCceEEEEcC--cccceecCCCCC-CCCceeEEEEEcCCCcEEEEcC--------------
Q 041767 77 VASSPGLIYLWGDLPDSPESNKSLIACNP--LTRLYRVLPQLG-SAWSKHGSVLVDSLNKVMVLTE-------------- 139 (341)
Q Consensus 77 ~~~~~glv~~~g~~~~~~~~~~~~~v~nP--~t~~w~~lp~~~-~~~~~~~~~~~~~~~ki~~~g~-------------- 139 (341)
+++.++.||+.||. ..+.++++|+ .+++|+.+|+|+ .+|..+++++. +++||++|+
T Consensus 13 ~~~~~~~vyv~GG~-----~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 13 GAIIGDKVYVGLGS-----AGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAI--DGKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred EEEECCEEEEEccc-----cCCeeEEEECCCCCCCceECCCCCCCCcccceEEEE--CCEEEEEeCCCCCCCCCcceecc
Confidence 66889999999885 1367889985 788999999997 46766665555 689999973
Q ss_pred eEEEEEcCCCccccccccCCCCCCCc---c-cccCceEEEeecCCCcC---Ccc-------------e-eeEeecc----
Q 041767 140 LAALFFSNSNHWLKFSSNLPSKPRSP---I-LMLNSVYALCDVGSPWR---SQW-------------K-LFCCNLS---- 194 (341)
Q Consensus 140 ~~evYd~~t~~W~~~~~~~p~~~r~~---~-~~~~~~y~~~~~G~~~~---~~~-------------~-~~~~~~~---- 194 (341)
.+|+||+.+++|+.++.++|. .+.. + ...+.+|++ ||..-. ..+ . ..+....
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~-~~~~~~~~~~~~g~IYvi--GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPV-GLLGASGFSLHNGQAYFT--GGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPE 162 (346)
T ss_pred cEEEEECCCCEEecCCCCCCC-cccceeEEEEeCCEEEEE--cCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChh
Confidence 388999999999998633442 2322 1 245678887 341000 000 0 0000000
Q ss_pred -cCCCCceeEEEccccccccccccc----CCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCC
Q 041767 195 -SLTNSQQFWHCLERREWGDVFDIL----KRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMP 269 (341)
Q Consensus 195 -~~~~~~v~~yD~~~~~W~~~~~~~----~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp 269 (341)
....+.+++||+++++|+.++.+. ..+.++.+ +++||++||.... ......+.++.+|+++++|++++.||
T Consensus 163 ~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~-~~~iyv~GG~~~~---~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 163 DYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHK-GNKLLLINGEIKP---GLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred HcCccceEEEEECCCCceeECccCCCCcCCCceEEEE-CCEEEEEeeeeCC---CccchheEEEEecCCCceeeecCCCC
Confidence 000246999999999999986432 12345554 8999999997532 11111234455566788999999998
Q ss_pred HHHHHhhcCCCceEEEecCCEEEEEEccc----------------------CcEEEEEeeeCCCCeeEEcCCCCC
Q 041767 270 VEMYRCFSESSKFKVFGMGDKVCFSAKRV----------------------GRLALWECEKGGGGEWRWIDGLPG 322 (341)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~v~~yD~~~~~~~~W~~~~~~~~ 322 (341)
.++.....+.....++..+++||+.++.. ..+.+||+. +++|+.++.+|.
T Consensus 239 ~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~---~~~W~~~~~lp~ 310 (346)
T TIGR03547 239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD---NGKWSKVGKLPQ 310 (346)
T ss_pred CCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec---CCcccccCCCCC
Confidence 65321000000122344567787776531 247899999 999999999885
No 8
>PHA02790 Kelch-like protein; Provisional
Probab=99.88 E-value=2.4e-21 Score=183.53 Aligned_cols=179 Identities=16% Similarity=0.242 Sum_probs=133.4
Q ss_pred ceEEEeeCCCCcEEEeeCCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCCceeEEEEE
Q 041767 49 AALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWSKHGSVLV 128 (341)
Q Consensus 49 ~~~~~yd~~~~~W~~l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~~ 128 (341)
..+..|||.+++|..++.+..|+..+. +++.||.||++||.. ....+..|||.+++|..+|||+.+|..+++++.
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v~~~~~iYviGG~~----~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~ 361 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYAS-GVPANNKLYVVGGLP----NPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI 361 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcce-EEEECCEEEEECCcC----CCCceEEEECCCCeEEECCCCCCCCcccEEEEE
Confidence 457899999999999986555655554 677899999999862 235689999999999999999988877766655
Q ss_pred cCCCcEEEEcC------eEEEEEcCCCccccccccCCCCCCCc---ccccCceEEEeecCCCcCCcceeeEeecccCCCC
Q 041767 129 DSLNKVMVLTE------LAALFFSNSNHWLKFSSNLPSKPRSP---ILMLNSVYALCDVGSPWRSQWKLFCCNLSSLTNS 199 (341)
Q Consensus 129 ~~~~ki~~~g~------~~evYd~~t~~W~~~~~~~p~~~r~~---~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~~~~ 199 (341)
+++||++|+ .+|+||+++++|+.++ +|+. +|.. +..++.+|++ | +
T Consensus 362 --~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~-~m~~-~r~~~~~~~~~~~IYv~---G-------------------G 415 (480)
T PHA02790 362 --NNVIYVIGGHSETDTTTEYLLPNHDQWQFGP-STYY-PHYKSCALVFGRRLFLV---G-------------------R 415 (480)
T ss_pred --CCEEEEecCcCCCCccEEEEeCCCCEEEeCC-CCCC-ccccceEEEECCEEEEE---C-------------------C
Confidence 789999984 5899999999999988 4773 3322 1233445554 2 1
Q ss_pred ceeEEEccccccccccccc---CCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEe
Q 041767 200 QQFWHCLERREWGDVFDIL---KRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEA 265 (341)
Q Consensus 200 ~v~~yD~~~~~W~~~~~~~---~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~ 265 (341)
.+++||+++++|+.++++. ..+.++.. +|+||++||.... ...+ .|..||+++++|+..
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~-~~~IYviGG~~~~----~~~~--~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNPELIIV-DNKLLLIGGFYRG----SYID--TIEVYNNRTYSWNIW 477 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCccccEEEEE-CCEEEEECCcCCC----cccc--eEEEEECCCCeEEec
Confidence 3678999999999887432 23456664 9999999997532 1123 356789999999853
No 9
>PLN02153 epithiospecifier protein
Probab=99.87 E-value=2.7e-20 Score=169.56 Aligned_cols=239 Identities=15% Similarity=0.149 Sum_probs=151.4
Q ss_pred CCCCcEEEeeC----CCCCCCCcceeeccCCEEEEecCCCCC-CCCCceEEEEcCcccceecCCCCC-CCCc---eeEEE
Q 041767 56 PNQNQWLRFDL----SFLPFRSLHPVASSPGLIYLWGDLPDS-PESNKSLIACNPLTRLYRVLPQLG-SAWS---KHGSV 126 (341)
Q Consensus 56 ~~~~~W~~l~~----~~~p~~~~~~~~~~~glv~~~g~~~~~-~~~~~~~~v~nP~t~~w~~lp~~~-~~~~---~~~~~ 126 (341)
+...+|.+++. .+.|+..+. +++.++.||+.||.... ....+.+++||+.+++|..++++. .++. .++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~-~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHG-IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcce-EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEE
Confidence 35667998874 224555554 67789999999886321 112357999999999999999874 3432 23333
Q ss_pred EEcCCCcEEEEcC--------eEEEEEcCCCccccccccC-----CCCCCCc---ccccCceEEEeecCCCcCCcceeeE
Q 041767 127 LVDSLNKVMVLTE--------LAALFFSNSNHWLKFSSNL-----PSKPRSP---ILMLNSVYALCDVGSPWRSQWKLFC 190 (341)
Q Consensus 127 ~~~~~~ki~~~g~--------~~evYd~~t~~W~~~~~~~-----p~~~r~~---~~~~~~~y~~~~~G~~~~~~~~~~~ 190 (341)
+. +++||++|+ .+++||+++++|+.++. | | .+|.. +...+.+|++ ||.. ..+
T Consensus 83 ~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~-~~~~~~p-~~R~~~~~~~~~~~iyv~--GG~~-~~~----- 150 (341)
T PLN02153 83 AV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTK-LDEEGGP-EARTFHSMASDENHVYVF--GGVS-KGG----- 150 (341)
T ss_pred EE--CCEEEEECCCCCCCccCcEEEEECCCCEEEEecc-CCCCCCC-CCceeeEEEEECCEEEEE--CCcc-CCC-----
Confidence 44 689999973 58999999999998873 5 3 23322 2234577877 3410 000
Q ss_pred eecccCCCCceeEEEccccccccccccc-----C-CccEEEEeCCEEEEEEeecccccccc--ccceEEEEEEeCCCCcE
Q 041767 191 CNLSSLTNSQQFWHCLERREWGDVFDIL-----K-RPRLVRGVGNRILMIGGLKSSFTLNA--SCSTILILRLDLDLLEW 262 (341)
Q Consensus 191 ~~~~~~~~~~v~~yD~~~~~W~~~~~~~-----~-~~~lv~~~~g~l~vvgg~~~~~~~~~--~~~~~~vw~~d~~~~~W 262 (341)
..........+++||+++++|+.++... + .+.++.+ +|+||++||........+ ....-.|+.||+++++|
T Consensus 151 ~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 151 LMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred ccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence 0000001236899999999999886321 1 2345554 899999998642100000 00012478889999999
Q ss_pred EEecc---CCHHHHHhhcCCCceEEEecCCEEEEEEcc--------------cCcEEEEEeeeCCCCeeEEcC
Q 041767 263 EEAGR---MPVEMYRCFSESSKFKVFGMGDKVCFSAKR--------------VGRLALWECEKGGGGEWRWID 318 (341)
Q Consensus 263 ~~~~~---mp~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~~v~~yD~~~~~~~~W~~~~ 318 (341)
+++.. +|.++.. ..++..+++||+.++. .+.+++||+. +++|+.++
T Consensus 230 ~~~~~~g~~P~~r~~-------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~---~~~W~~~~ 292 (341)
T PLN02153 230 TEVETTGAKPSARSV-------FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE---TLVWEKLG 292 (341)
T ss_pred EeccccCCCCCCcce-------eeeEEECCEEEEECcccCCccccccccccccccEEEEEcC---ccEEEecc
Confidence 99864 5554322 2334446778777653 1368999999 99999985
No 10
>PLN02153 epithiospecifier protein
Probab=99.85 E-value=1.8e-19 Score=164.07 Aligned_cols=240 Identities=14% Similarity=0.179 Sum_probs=148.8
Q ss_pred ceEEEeeCCCCcEEEeeCC-CCCCC---CcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCC-----CCC
Q 041767 49 AALHVYDPNQNQWLRFDLS-FLPFR---SLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQL-----GSA 119 (341)
Q Consensus 49 ~~~~~yd~~~~~W~~l~~~-~~p~~---~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~-----~~~ 119 (341)
..++.||+.+++|..++.. ..|+. .+ .+++.++.||+.||... ....+.+++|||.|++|..+++| +.+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~ 127 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGV-RMVAVGTKLYIFGGRDE-KREFSDFYSYDTVKNEWTFLTKLDEEGGPEA 127 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCce-EEEEECCEEEEECCCCC-CCccCcEEEEECCCCEEEEeccCCCCCCCCC
Confidence 4689999999999988732 23432 33 36788999999998632 22346899999999999999887 445
Q ss_pred CceeEEEEEcCCCcEEEEcC--------------eEEEEEcCCCccccccccCCC--CCCCc---ccccCceEEEeecCC
Q 041767 120 WSKHGSVLVDSLNKVMVLTE--------------LAALFFSNSNHWLKFSSNLPS--KPRSP---ILMLNSVYALCDVGS 180 (341)
Q Consensus 120 ~~~~~~~~~~~~~ki~~~g~--------------~~evYd~~t~~W~~~~~~~p~--~~r~~---~~~~~~~y~~~~~G~ 180 (341)
|..+++++. +++||++|+ .+++||+++++|+.++. +.. .+|.. +...+.+|++ +|.
T Consensus 128 R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~-~~~~~~~r~~~~~~~~~~~iyv~--GG~ 202 (341)
T PLN02153 128 RTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPD-PGENFEKRGGAGFAVVQGKIWVV--YGF 202 (341)
T ss_pred ceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCC-CCCCCCCCCcceEEEECCeEEEE--ecc
Confidence 656655554 679999873 37899999999998874 421 22322 2345677776 231
Q ss_pred CcCCcceeeEeecc--cCCCCceeEEEccccccccccc------ccCCccEEEEeCCEEEEEEeecccc--cccc-ccce
Q 041767 181 PWRSQWKLFCCNLS--SLTNSQQFWHCLERREWGDVFD------ILKRPRLVRGVGNRILMIGGLKSSF--TLNA-SCST 249 (341)
Q Consensus 181 ~~~~~~~~~~~~~~--~~~~~~v~~yD~~~~~W~~~~~------~~~~~~lv~~~~g~l~vvgg~~~~~--~~~~-~~~~ 249 (341)
- ..+.... ....+.+.+||+++++|+.++. ......++.+ +++||++||..... .... ....
T Consensus 203 ~------~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ 275 (341)
T PLN02153 203 A------TSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV-GKYIIIFGGEVWPDLKGHLGPGTLS 275 (341)
T ss_pred c------cccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE-CCEEEEECcccCCcccccccccccc
Confidence 0 0000000 0012468999999999998752 1112344554 89999999963210 0000 0111
Q ss_pred EEEEEEeCCCCcEEEec-----cCCHHHHHhhcCCCceEEEecCCEEEEEEcc------cCcEEEEEee
Q 041767 250 ILILRLDLDLLEWEEAG-----RMPVEMYRCFSESSKFKVFGMGDKVCFSAKR------VGRLALWECE 307 (341)
Q Consensus 250 ~~vw~~d~~~~~W~~~~-----~mp~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~v~~yD~~ 307 (341)
-+||.||+++++|+++. .||..... + ....+-.++.||+.++. ...+.+|++.
T Consensus 276 n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~-~----~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 276 NEGYALDTETLVWEKLGECGEPAMPRGWTA-Y----TTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred ccEEEEEcCccEEEeccCCCCCCCCCcccc-c----cccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 26899999999999986 44543321 0 01122234567776543 2446777654
No 11
>PLN02193 nitrile-specifier protein
Probab=99.85 E-value=3.5e-19 Score=168.32 Aligned_cols=234 Identities=15% Similarity=0.179 Sum_probs=153.5
Q ss_pred EEEeeCCC----CcEEEeeCC---CCCCCCcceeeccCCEEEEecCCCCC-CCCCceEEEEcCcccceecCCCCC-CCC-
Q 041767 51 LHVYDPNQ----NQWLRFDLS---FLPFRSLHPVASSPGLIYLWGDLPDS-PESNKSLIACNPLTRLYRVLPQLG-SAW- 120 (341)
Q Consensus 51 ~~~yd~~~----~~W~~l~~~---~~p~~~~~~~~~~~glv~~~g~~~~~-~~~~~~~~v~nP~t~~w~~lp~~~-~~~- 120 (341)
+..+|+.+ ++|..++.+ +.|+..+. ++..++.||+.||.... ....+.+++||+.+++|..++++. .++
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~-~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~ 217 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHG-IAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHL 217 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccccE-EEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCC
Confidence 44447655 799988742 24555565 67788999999885211 112356999999999999987653 222
Q ss_pred --ceeEEEEEcCCCcEEEEcC--------eEEEEEcCCCccccccccCCC--CCCCc---ccccCceEEEeecCCCcCCc
Q 041767 121 --SKHGSVLVDSLNKVMVLTE--------LAALFFSNSNHWLKFSSNLPS--KPRSP---ILMLNSVYALCDVGSPWRSQ 185 (341)
Q Consensus 121 --~~~~~~~~~~~~ki~~~g~--------~~evYd~~t~~W~~~~~~~p~--~~r~~---~~~~~~~y~~~~~G~~~~~~ 185 (341)
..+++++. +++||++|+ .+++||+.+++|+.+.. ++. .+|.. +...+.+|++ ||.
T Consensus 218 ~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~-~~~~P~~R~~h~~~~~~~~iYv~--GG~----- 287 (470)
T PLN02193 218 SCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTP-VEEGPTPRSFHSMAADEENVYVF--GGV----- 287 (470)
T ss_pred cccceEEEEE--CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCc-CCCCCCCccceEEEEECCEEEEE--CCC-----
Confidence 22333344 679999973 58999999999999873 521 23432 1234567776 331
Q ss_pred ceeeEeecccCCCCceeEEEccccccccccc---c---cCCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCC
Q 041767 186 WKLFCCNLSSLTNSQQFWHCLERREWGDVFD---I---LKRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDL 259 (341)
Q Consensus 186 ~~~~~~~~~~~~~~~v~~yD~~~~~W~~~~~---~---~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~ 259 (341)
.. ......+.+||+.+++|+.++. . ...+.++.+ +++||++||.... . .-++|.||+.+
T Consensus 288 ----~~---~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~----~---~~dv~~yD~~t 352 (470)
T PLN02193 288 ----SA---TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGC----E---VDDVHYYDPVQ 352 (470)
T ss_pred ----CC---CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCC----c---cCceEEEECCC
Confidence 00 1112368899999999998752 1 112345554 8999999986432 1 12578999999
Q ss_pred CcEEEeccC---CHHHHHhhcCCCceEEEecCCEEEEEEccc--------------CcEEEEEeeeCCCCeeEEcCCC
Q 041767 260 LEWEEAGRM---PVEMYRCFSESSKFKVFGMGDKVCFSAKRV--------------GRLALWECEKGGGGEWRWIDGL 320 (341)
Q Consensus 260 ~~W~~~~~m---p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~v~~yD~~~~~~~~W~~~~~~ 320 (341)
++|+++..+ |.++.. ..++..+++||+.++.. +.+++||+. +++|+.++.+
T Consensus 353 ~~W~~~~~~g~~P~~R~~-------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~---t~~W~~~~~~ 420 (470)
T PLN02193 353 DKWTQVETFGVRPSERSV-------FASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE---TLQWERLDKF 420 (470)
T ss_pred CEEEEeccCCCCCCCcce-------eEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC---cCEEEEcccC
Confidence 999999765 444221 23344467777766531 358999999 9999998754
No 12
>PHA03098 kelch-like protein; Provisional
Probab=99.85 E-value=7e-20 Score=176.77 Aligned_cols=199 Identities=20% Similarity=0.190 Sum_probs=142.9
Q ss_pred ceEEEeeCCCCcEEEeeCCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCCceeEEEEE
Q 041767 49 AALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWSKHGSVLV 128 (341)
Q Consensus 49 ~~~~~yd~~~~~W~~l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~~ 128 (341)
..+..||+.+++|..++.+..|+..+. +++.+|.||+.||..+ ....+.+++|||.|++|..++||+.+|..+++++.
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~-~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~ 388 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPG-VTVFNNRIYVIGGIYN-SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV 388 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccce-EEEECCEEEEEeCCCC-CEecceEEEEcCCCCceeeCCCcCcCCccceEEEE
Confidence 468899999999999885545655554 7788999999998632 22356799999999999999999888877665554
Q ss_pred cCCCcEEEEcC---------eEEEEEcCCCccccccccCCCCCCCc---ccccCceEEEeecCCCcCCcceeeEeecccC
Q 041767 129 DSLNKVMVLTE---------LAALFFSNSNHWLKFSSNLPSKPRSP---ILMLNSVYALCDVGSPWRSQWKLFCCNLSSL 196 (341)
Q Consensus 129 ~~~~ki~~~g~---------~~evYd~~t~~W~~~~~~~p~~~r~~---~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~ 196 (341)
+++||++|+ .+++||+.+++|+.++ ++|. +|.. +..++.+|++ ||. .......
T Consensus 389 --~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~-~r~~~~~~~~~~~iyv~--GG~---------~~~~~~~ 453 (534)
T PHA03098 389 --NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS-PLPI-SHYGGCAIYHDGKIYVI--GGI---------SYIDNIK 453 (534)
T ss_pred --CCEEEEECCcCCCCcccceEEEEeCCCCeeeecC-CCCc-cccCceEEEECCEEEEE--CCc---------cCCCCCc
Confidence 689999974 5899999999999988 4774 3322 2244567776 341 0000000
Q ss_pred CCCceeEEEcccccccccccc---cCCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHH
Q 041767 197 TNSQQFWHCLERREWGDVFDI---LKRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVE 271 (341)
Q Consensus 197 ~~~~v~~yD~~~~~W~~~~~~---~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~ 271 (341)
....+++||+++++|+.++.. ...+.++.. +|+||++||.... .... .|+.||+++++|+.+..+|..
T Consensus 454 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~----~~~~--~v~~yd~~~~~W~~~~~~p~~ 524 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYE----YYIN--EIEVYDDKTNTWTLFCKFPKV 524 (534)
T ss_pred ccceEEEecCCCCceeeCCCCCcccccceEEEE-CCEEEEEcCCcCC----cccc--eeEEEeCCCCEEEecCCCccc
Confidence 123589999999999998632 123445664 8999999997643 1112 477889999999999987753
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.83 E-value=5.1e-19 Score=159.98 Aligned_cols=221 Identities=15% Similarity=0.206 Sum_probs=143.7
Q ss_pred eEEEee-CCCC-cEEEeeCCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccce----ecCCCCCCCCcee
Q 041767 50 ALHVYD-PNQN-QWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLY----RVLPQLGSAWSKH 123 (341)
Q Consensus 50 ~~~~yd-~~~~-~W~~l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w----~~lp~~~~~~~~~ 123 (341)
.+..|+ +..+ +|..++.+..|+..+. .++.++.||+.||... ....+.++.||+.+++| ..+|+|+.++..+
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~-~~~~~~~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~ 117 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGA-SVSVENGIYYIGGSNS-SERFSSVYRITLDESKEELICETIGNLPFTFENG 117 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceE-EEEECCEEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc
Confidence 455554 4433 6988774334544444 5667899999988622 22357899999999998 7899998877777
Q ss_pred EEEEEcCCCcEEEEcC--------eEEEEEcCCCccccccccCCCCCCCcc---cccCceEEEeecCCCcCCcceeeEee
Q 041767 124 GSVLVDSLNKVMVLTE--------LAALFFSNSNHWLKFSSNLPSKPRSPI---LMLNSVYALCDVGSPWRSQWKLFCCN 192 (341)
Q Consensus 124 ~~~~~~~~~ki~~~g~--------~~evYd~~t~~W~~~~~~~p~~~r~~~---~~~~~~y~~~~~G~~~~~~~~~~~~~ 192 (341)
++++. +++||++|+ .+++||+++++|+.++. ||..+|... ..++.+|++ ||. ..
T Consensus 118 ~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~~r~~~~~~~~~~~iYv~--GG~---------~~- 182 (323)
T TIGR03548 118 SACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD-FPGEPRVQPVCVKLQNELYVF--GGG---------SN- 182 (323)
T ss_pred eEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-CCCCCCCcceEEEECCEEEEE--cCC---------CC-
Confidence 66555 689999973 58999999999999884 774334331 345677877 331 00
Q ss_pred cccCCCCceeEEEccccccccccccc----C----CccEEEEeCCEEEEEEeecccccccc-------------------
Q 041767 193 LSSLTNSQQFWHCLERREWGDVFDIL----K----RPRLVRGVGNRILMIGGLKSSFTLNA------------------- 245 (341)
Q Consensus 193 ~~~~~~~~v~~yD~~~~~W~~~~~~~----~----~~~lv~~~~g~l~vvgg~~~~~~~~~------------------- 245 (341)
.....+++||+++++|+.++.+. + ....+...+++||++||.+.....+.
T Consensus 183 ---~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (323)
T TIGR03548 183 ---IAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEY 259 (323)
T ss_pred ---ccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHH
Confidence 00124789999999999886321 1 11222334789999999753210000
Q ss_pred -------ccceEEEEEEeCCCCcEEEeccCCH-HHHHhhcCCCceEEEecCCEEEEEEcc
Q 041767 246 -------SCSTILILRLDLDLLEWEEAGRMPV-EMYRCFSESSKFKVFGMGDKVCFSAKR 297 (341)
Q Consensus 246 -------~~~~~~vw~~d~~~~~W~~~~~mp~-~~~~~~~~~~~~~~~~~~~~i~~~~~~ 297 (341)
..-.=.|+.||+.+++|+.+++||. ++.. ..++..++.||+.++.
T Consensus 260 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~-------~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 260 FLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCG-------AALLLTGNNIFSINGE 312 (323)
T ss_pred hCCCccccCcCceEEEEECCCCeeeEcccccccccCc-------hheEEECCEEEEEecc
Confidence 0000147888999999999998873 3221 2345567889887764
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.83 E-value=8.5e-19 Score=160.15 Aligned_cols=223 Identities=12% Similarity=0.126 Sum_probs=139.4
Q ss_pred ceEEEeeC--CCCcEEEeeCCC-CCCCCcceeeccCCEEEEecCCCCCC-----CCCceEEEEcCcccceecCCC-CCCC
Q 041767 49 AALHVYDP--NQNQWLRFDLSF-LPFRSLHPVASSPGLIYLWGDLPDSP-----ESNKSLIACNPLTRLYRVLPQ-LGSA 119 (341)
Q Consensus 49 ~~~~~yd~--~~~~W~~l~~~~-~p~~~~~~~~~~~glv~~~g~~~~~~-----~~~~~~~v~nP~t~~w~~lp~-~~~~ 119 (341)
..++.||+ .+++|..++.+. .++..+. +++.+|.||++||..... ...+.+++|||.+++|+.+++ ++..
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~-~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~ 107 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAV-AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG 107 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccce-EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc
Confidence 45678885 678899988443 3544454 788899999999863211 124679999999999999974 4333
Q ss_pred CceeEEEEEcCCCcEEEEcC------------------------------------------eEEEEEcCCCcccccccc
Q 041767 120 WSKHGSVLVDSLNKVMVLTE------------------------------------------LAALFFSNSNHWLKFSSN 157 (341)
Q Consensus 120 ~~~~~~~~~~~~~ki~~~g~------------------------------------------~~evYd~~t~~W~~~~~~ 157 (341)
+..++++.+ .++|||++|+ .+|+||+.+++|+.++ +
T Consensus 108 ~~~~~~~~~-~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~-~ 185 (346)
T TIGR03547 108 LLGASGFSL-HNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG-E 185 (346)
T ss_pred ccceeEEEE-eCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc-c
Confidence 322323311 2689999873 4899999999999998 4
Q ss_pred CCCCCCCc---ccccCceEEEeecCCCcCCcceeeEeecccCCCCceeEEE--cccccccccccccC----------Ccc
Q 041767 158 LPSKPRSP---ILMLNSVYALCDVGSPWRSQWKLFCCNLSSLTNSQQFWHC--LERREWGDVFDILK----------RPR 222 (341)
Q Consensus 158 ~p~~~r~~---~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~~~~~v~~yD--~~~~~W~~~~~~~~----------~~~ 222 (341)
||..++.. +..++.+|++ ||. ... . .....+..|| +++++|+.++.+.. .+.
T Consensus 186 ~p~~~r~~~~~~~~~~~iyv~--GG~---------~~~-~-~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~ 252 (346)
T TIGR03547 186 NPFLGTAGSAIVHKGNKLLLI--NGE---------IKP-G-LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAF 252 (346)
T ss_pred CCCCcCCCceEEEECCEEEEE--eee---------eCC-C-ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEe
Confidence 87433332 1245677876 331 100 1 1112345565 46779998764311 011
Q ss_pred EEEEeCCEEEEEEeecccccc-----------cc--ccceEEEEEEeCCCCcEEEeccCCHHHHHhhcCCCceEEEecCC
Q 041767 223 LVRGVGNRILMIGGLKSSFTL-----------NA--SCSTILILRLDLDLLEWEEAGRMPVEMYRCFSESSKFKVFGMGD 289 (341)
Q Consensus 223 lv~~~~g~l~vvgg~~~~~~~-----------~~--~~~~~~vw~~d~~~~~W~~~~~mp~~~~~~~~~~~~~~~~~~~~ 289 (341)
++. .+|+||++||....... .. ....+++ ||+++++|+.+..||.++.. ..++..++
T Consensus 253 a~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--yd~~~~~W~~~~~lp~~~~~-------~~~~~~~~ 322 (346)
T TIGR03547 253 AGI-SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEV--YALDNGKWSKVGKLPQGLAY-------GVSVSWNN 322 (346)
T ss_pred eeE-ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeE--EEecCCcccccCCCCCCcee-------eEEEEcCC
Confidence 344 48999999997421000 00 0123444 56678899999999876432 23456688
Q ss_pred EEEEEEcc
Q 041767 290 KVCFSAKR 297 (341)
Q Consensus 290 ~i~~~~~~ 297 (341)
+||+.++.
T Consensus 323 ~iyv~GG~ 330 (346)
T TIGR03547 323 GVLLIGGE 330 (346)
T ss_pred EEEEEecc
Confidence 99988764
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.83 E-value=8.2e-19 Score=161.64 Aligned_cols=231 Identities=12% Similarity=0.122 Sum_probs=140.9
Q ss_pred eeeccCCEEEEecCCCCCCCCCceEEEEcCc--ccceecCCCCCC-CCceeEEEEEcCCCcEEEEcC-------------
Q 041767 76 PVASSPGLIYLWGDLPDSPESNKSLIACNPL--TRLYRVLPQLGS-AWSKHGSVLVDSLNKVMVLTE------------- 139 (341)
Q Consensus 76 ~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~--t~~w~~lp~~~~-~~~~~~~~~~~~~~ki~~~g~------------- 139 (341)
..++.++.||+.+|. ....++++|+. +++|..+++|+. +|..++.++. +++||++|+
T Consensus 33 ~~~~~~~~iyv~gG~-----~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~--~~~IYV~GG~~~~~~~~~~~~~ 105 (376)
T PRK14131 33 TGAIDNNTVYVGLGS-----AGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFI--DGKLYVFGGIGKTNSEGSPQVF 105 (376)
T ss_pred eEEEECCEEEEEeCC-----CCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCceeEc
Confidence 367789999998775 13568888875 588999999863 5555544444 689999873
Q ss_pred -eEEEEEcCCCccccccccCCCCCCCcc--c-ccCceEEEeecCCCcC--Cc-c--------------ee---eEee--c
Q 041767 140 -LAALFFSNSNHWLKFSSNLPSKPRSPI--L-MLNSVYALCDVGSPWR--SQ-W--------------KL---FCCN--L 193 (341)
Q Consensus 140 -~~evYd~~t~~W~~~~~~~p~~~r~~~--~-~~~~~y~~~~~G~~~~--~~-~--------------~~---~~~~--~ 193 (341)
.+++||+.+++|+.++...|....... . .++.+|++ ||.--. .+ + ++ +... .
T Consensus 106 ~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~--GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~ 183 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYIT--GGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPE 183 (376)
T ss_pred ccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEE--CCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChh
Confidence 378999999999998742342211111 2 45678887 341000 00 0 00 0000 0
Q ss_pred ccCCCCceeEEEccccccccccccc----CCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCC
Q 041767 194 SSLTNSQQFWHCLERREWGDVFDIL----KRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMP 269 (341)
Q Consensus 194 ~~~~~~~v~~yD~~~~~W~~~~~~~----~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp 269 (341)
.....+.+++||+.+++|+.++... ..+.++. .+++||++||..... .....+..+++|+++++|+++..||
T Consensus 184 ~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~-~~~~iYv~GG~~~~~---~~~~~~~~~~~~~~~~~W~~~~~~p 259 (376)
T PRK14131 184 DYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVI-KGNKLWLINGEIKPG---LRTDAVKQGKFTGNNLKWQKLPDLP 259 (376)
T ss_pred hcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEE-ECCEEEEEeeeECCC---cCChhheEEEecCCCcceeecCCCC
Confidence 0000246899999999999876322 1234555 489999999974321 1111233445677889999999998
Q ss_pred HHHHHhhcC-CCceEEEecCCEEEEEEccc----------------------CcEEEEEeeeCCCCeeEEcCCCCC
Q 041767 270 VEMYRCFSE-SSKFKVFGMGDKVCFSAKRV----------------------GRLALWECEKGGGGEWRWIDGLPG 322 (341)
Q Consensus 270 ~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~----------------------~~v~~yD~~~~~~~~W~~~~~~~~ 322 (341)
.++...... .....++..+++||+.++.. ..+.+||++ +++|+.++.+|.
T Consensus 260 ~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~---~~~W~~~~~lp~ 332 (376)
T PRK14131 260 PAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV---NGKWQKVGELPQ 332 (376)
T ss_pred CCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec---CCcccccCcCCC
Confidence 754211000 00111233456777766431 135789999 999999998885
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.82 E-value=2.4e-18 Score=158.62 Aligned_cols=241 Identities=13% Similarity=0.145 Sum_probs=149.7
Q ss_pred eEEEeeCC--CCcEEEeeC-CCCCCCCcceeeccCCEEEEecCCCCC-C----CCCceEEEEcCcccceecCCCC-CCCC
Q 041767 50 ALHVYDPN--QNQWLRFDL-SFLPFRSLHPVASSPGLIYLWGDLPDS-P----ESNKSLIACNPLTRLYRVLPQL-GSAW 120 (341)
Q Consensus 50 ~~~~yd~~--~~~W~~l~~-~~~p~~~~~~~~~~~glv~~~g~~~~~-~----~~~~~~~v~nP~t~~w~~lp~~-~~~~ 120 (341)
.++.||.. +++|..++. |..++..+. +++.++.||+.||.... . .....+++|||.+++|+.++++ +..+
T Consensus 51 ~~~~~d~~~~~~~W~~l~~~p~~~r~~~~-~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~ 129 (376)
T PRK14131 51 SWYKLDLNAPSKGWTKIAAFPGGPREQAV-AAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGL 129 (376)
T ss_pred eEEEEECCCCCCCeEECCcCCCCCcccce-EEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcc
Confidence 46788876 478998873 323444443 77889999999986321 0 1146799999999999999863 3333
Q ss_pred ceeEEEEEcCCCcEEEEcC------------------------------------------eEEEEEcCCCccccccccC
Q 041767 121 SKHGSVLVDSLNKVMVLTE------------------------------------------LAALFFSNSNHWLKFSSNL 158 (341)
Q Consensus 121 ~~~~~~~~~~~~ki~~~g~------------------------------------------~~evYd~~t~~W~~~~~~~ 158 (341)
..+++++. .+++||++|+ .+++||+.+++|+.++ ++
T Consensus 130 ~~~~~~~~-~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~-~~ 207 (376)
T PRK14131 130 AGHVAVSL-HNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG-ES 207 (376)
T ss_pred cceEEEEe-eCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC-cC
Confidence 23333331 2689999974 3799999999999988 47
Q ss_pred CCCCCCc--c-cccCceEEEeecCCCcCCcceeeEeecccCCCCc--eeEEEcccccccccccccCC---------c-cE
Q 041767 159 PSKPRSP--I-LMLNSVYALCDVGSPWRSQWKLFCCNLSSLTNSQ--QFWHCLERREWGDVFDILKR---------P-RL 223 (341)
Q Consensus 159 p~~~r~~--~-~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~~~~~--v~~yD~~~~~W~~~~~~~~~---------~-~l 223 (341)
|..++.. + ...+.+|++ ||. ... ... ... ...||+++++|+.++.+... . ..
T Consensus 208 p~~~~~~~a~v~~~~~iYv~--GG~---------~~~-~~~-~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~ 274 (376)
T PRK14131 208 PFLGTAGSAVVIKGNKLWLI--NGE---------IKP-GLR-TDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAF 274 (376)
T ss_pred CCCCCCcceEEEECCEEEEE--eee---------ECC-CcC-ChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEe
Confidence 7423322 1 234567776 231 000 011 112 34568889999987632110 1 11
Q ss_pred EEEeCCEEEEEEeecccccc-----------ccccceEEEEEEeCCCCcEEEeccCCHHHHHhhcCCCceEEEecCCEEE
Q 041767 224 VRGVGNRILMIGGLKSSFTL-----------NASCSTILILRLDLDLLEWEEAGRMPVEMYRCFSESSKFKVFGMGDKVC 292 (341)
Q Consensus 224 v~~~~g~l~vvgg~~~~~~~-----------~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~~~~~~~~~~~~~~~~~~i~ 292 (341)
+...+|+||++||....... ....+...+..||+++++|++++.||.++.. ..++..++.||
T Consensus 275 a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~-------~~av~~~~~iy 347 (376)
T PRK14131 275 AGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAY-------GVSVSWNNGVL 347 (376)
T ss_pred ceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccc-------eEEEEeCCEEE
Confidence 22248999999997532100 0000111234567888999999999987532 23566788899
Q ss_pred EEEccc------CcEEEEEeeeCCCCeeEE
Q 041767 293 FSAKRV------GRLALWECEKGGGGEWRW 316 (341)
Q Consensus 293 ~~~~~~------~~v~~yD~~~~~~~~W~~ 316 (341)
+.++.. ..+.+|++. .+++..
T Consensus 348 v~GG~~~~~~~~~~v~~~~~~---~~~~~~ 374 (376)
T PRK14131 348 LIGGETAGGKAVSDVTLLSWD---GKKLTV 374 (376)
T ss_pred EEcCCCCCCcEeeeEEEEEEc---CCEEEE
Confidence 887642 457888888 666653
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.82 E-value=2e-18 Score=156.13 Aligned_cols=214 Identities=14% Similarity=0.133 Sum_probs=138.8
Q ss_pred eeccCCEEEEecCCCCCC---------CCCceEEEEc-Cccc-ceecCCCCCCCCceeEEEEEcCCCcEEEEcC------
Q 041767 77 VASSPGLIYLWGDLPDSP---------ESNKSLIACN-PLTR-LYRVLPQLGSAWSKHGSVLVDSLNKVMVLTE------ 139 (341)
Q Consensus 77 ~~~~~glv~~~g~~~~~~---------~~~~~~~v~n-P~t~-~w~~lp~~~~~~~~~~~~~~~~~~ki~~~g~------ 139 (341)
++++++.|++.||..... .....+++++ +..+ +|..+++|+.+|..+++++. +++||++|+
T Consensus 9 ~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~--~~~lyviGG~~~~~~ 86 (323)
T TIGR03548 9 AGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSV--ENGIYYIGGSNSSER 86 (323)
T ss_pred eeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEE--CCEEEEEcCCCCCCC
Confidence 677889999998852110 0113566664 5433 79999999888766655554 689999973
Q ss_pred --eEEEEEcCCCcc----ccccccCCCCCCCc--ccccCceEEEeecCCCcCCcceeeEeecccCCCCceeEEEcccccc
Q 041767 140 --LAALFFSNSNHW----LKFSSNLPSKPRSP--ILMLNSVYALCDVGSPWRSQWKLFCCNLSSLTNSQQFWHCLERREW 211 (341)
Q Consensus 140 --~~evYd~~t~~W----~~~~~~~p~~~r~~--~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~~~~~v~~yD~~~~~W 211 (341)
.++.||..+++| +.++ +||..++.. +...+.+|++ ||. . .....+.+++||+++++|
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~-~lp~~~~~~~~~~~~~~iYv~--GG~---------~---~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIG-NLPFTFENGSACYKDGTLYVG--GGN---------R---NGKPSNKSYLFNLETQEW 151 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcC-CCCcCccCceEEEECCEEEEE--eCc---------C---CCccCceEEEEcCCCCCe
Confidence 689999999998 6666 477432221 2345577776 331 0 011124689999999999
Q ss_pred ccccccc---C-CccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCH---HHHHhhcCCCceEE
Q 041767 212 GDVFDIL---K-RPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPV---EMYRCFSESSKFKV 284 (341)
Q Consensus 212 ~~~~~~~---~-~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~---~~~~~~~~~~~~~~ 284 (341)
+.++.+. + .+.++. .+++||++||.... . ..+++.||+++++|+++..|+. +.... ....+
T Consensus 152 ~~~~~~p~~~r~~~~~~~-~~~~iYv~GG~~~~----~---~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~----~~~~~ 219 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVK-LQNELYVFGGGSNI----A---YTDGYKYSPKKNQWQKVADPTTDSEPISLL----GAASI 219 (323)
T ss_pred eECCCCCCCCCCcceEEE-ECCEEEEEcCCCCc----c---ccceEEEecCCCeeEECCCCCCCCCceecc----ceeEE
Confidence 9886322 2 233445 48999999997542 1 1246889999999999987742 11110 01122
Q ss_pred EecCCEEEEEEccc-------------------------------------CcEEEEEeeeCCCCeeEEcCCCCC
Q 041767 285 FGMGDKVCFSAKRV-------------------------------------GRLALWECEKGGGGEWRWIDGLPG 322 (341)
Q Consensus 285 ~~~~~~i~~~~~~~-------------------------------------~~v~~yD~~~~~~~~W~~~~~~~~ 322 (341)
+..+++||+.++.. +.+++||+. +++|+.++.+|.
T Consensus 220 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~---~~~W~~~~~~p~ 291 (323)
T TIGR03548 220 KINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVR---TGKWKSIGNSPF 291 (323)
T ss_pred EECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECC---CCeeeEcccccc
Confidence 33356666655421 469999999 999999998763
No 18
>PLN02193 nitrile-specifier protein
Probab=99.77 E-value=4.3e-17 Score=154.17 Aligned_cols=200 Identities=16% Similarity=0.209 Sum_probs=133.6
Q ss_pred ceEEEeeCCCCcEEEeeCC-CCCC---CCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCC---CCCCc
Q 041767 49 AALHVYDPNQNQWLRFDLS-FLPF---RSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQL---GSAWS 121 (341)
Q Consensus 49 ~~~~~yd~~~~~W~~l~~~-~~p~---~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~---~~~~~ 121 (341)
..++.||+.+++|..++.. ..|. ..+ .+++.++.||+.||.. .....+.+++|||.|++|..+++| +.+|.
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~-~~v~~~~~lYvfGG~~-~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~ 270 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGV-RMVSIGSTLYVFGGRD-ASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS 270 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccce-EEEEECCEEEEECCCC-CCCCCccEEEEECCCCEEEEcCcCCCCCCCcc
Confidence 4588999999999987632 2332 233 3677899999999862 222357899999999999999988 55666
Q ss_pred eeEEEEEcCCCcEEEEcC--------eEEEEEcCCCcccccccc--CCCCCCCc---ccccCceEEEeecCCCcCCccee
Q 041767 122 KHGSVLVDSLNKVMVLTE--------LAALFFSNSNHWLKFSSN--LPSKPRSP---ILMLNSVYALCDVGSPWRSQWKL 188 (341)
Q Consensus 122 ~~~~~~~~~~~ki~~~g~--------~~evYd~~t~~W~~~~~~--~p~~~r~~---~~~~~~~y~~~~~G~~~~~~~~~ 188 (341)
.+++++. +++||++|+ .+++||+.+++|+.++.+ +| .+|.. +...+.+|++ +|.
T Consensus 271 ~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~-~~R~~~~~~~~~gkiyvi--GG~-------- 337 (470)
T PLN02193 271 FHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSF-SIRGGAGLEVVQGKVWVV--YGF-------- 337 (470)
T ss_pred ceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCC-CCCCCcEEEEECCcEEEE--ECC--------
Confidence 6665554 689999983 479999999999987631 22 12322 1234566665 231
Q ss_pred eEeecccCCCCceeEEEcccccccccccc------cCCccEEEEeCCEEEEEEeeccccc--cccc-cceEEEEEEeCCC
Q 041767 189 FCCNLSSLTNSQQFWHCLERREWGDVFDI------LKRPRLVRGVGNRILMIGGLKSSFT--LNAS-CSTILILRLDLDL 259 (341)
Q Consensus 189 ~~~~~~~~~~~~v~~yD~~~~~W~~~~~~------~~~~~lv~~~~g~l~vvgg~~~~~~--~~~~-~~~~~vw~~d~~~ 259 (341)
.. ...+.+.+||+++++|+.++.. ...+.++. .+++||++||...... .... ...-++|.||+.+
T Consensus 338 -~g----~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 338 -NG----CEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET 411 (470)
T ss_pred -CC----CccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCEEEEECCccCCccccccCccceeccEEEEEcCc
Confidence 00 1124689999999999987521 11234555 4899999999743100 0000 0112589999999
Q ss_pred CcEEEeccCC
Q 041767 260 LEWEEAGRMP 269 (341)
Q Consensus 260 ~~W~~~~~mp 269 (341)
++|+++..++
T Consensus 412 ~~W~~~~~~~ 421 (470)
T PLN02193 412 LQWERLDKFG 421 (470)
T ss_pred CEEEEcccCC
Confidence 9999987654
No 19
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.74 E-value=4e-16 Score=134.23 Aligned_cols=200 Identities=16% Similarity=0.145 Sum_probs=122.4
Q ss_pred eeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCCc---ee-EEEEEc---CCCcEEEEc--------CeE
Q 041767 77 VASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWS---KH-GSVLVD---SLNKVMVLT--------ELA 141 (341)
Q Consensus 77 ~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~---~~-~~~~~~---~~~ki~~~g--------~~~ 141 (341)
+++||||||+... ..++||||.|++|+.||+++.+.. .. .+...+ ..|||+.+. ..+
T Consensus 1 ~~sCnGLlc~~~~--------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~ 72 (230)
T TIGR01640 1 VVPCDGLICFSYG--------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEH 72 (230)
T ss_pred CcccceEEEEecC--------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccE
Confidence 3589999998742 579999999999999987643211 11 111122 356998874 268
Q ss_pred EEEEcCCCccccccccCCCCCCCcccccCceEEEeecCCCcCCcceeeEeecccC--CCC-ceeEEEcccccccc-ccc-
Q 041767 142 ALFFSNSNHWLKFSSNLPSKPRSPILMLNSVYALCDVGSPWRSQWKLFCCNLSSL--TNS-QQFWHCLERREWGD-VFD- 216 (341)
Q Consensus 142 evYd~~t~~W~~~~~~~p~~~r~~~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~--~~~-~v~~yD~~~~~W~~-~~~- 216 (341)
++|++++++|+.+.. .+... ..... .++.+ |. +|...... ... .|++||+++++|++ ++.
T Consensus 73 ~Vys~~~~~Wr~~~~-~~~~~---~~~~~--~v~~~-G~--------lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 73 QVYTLGSNSWRTIEC-SPPHH---PLKSR--GVCIN-GV--------LYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EEEEeCCCCcccccc-CCCCc---cccCC--eEEEC-CE--------EEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 999999999999873 33110 01111 22233 52 23322111 111 59999999999995 651
Q ss_pred -cc----CCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeC-CCCcEEEeccCCHHHHHhhcCCCceEEEecCCE
Q 041767 217 -IL----KRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDL-DLLEWEEAGRMPVEMYRCFSESSKFKVFGMGDK 290 (341)
Q Consensus 217 -~~----~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~-~~~~W~~~~~mp~~~~~~~~~~~~~~~~~~~~~ 290 (341)
.. ....++++ +|+|.++...... ..++||+|++ ++..|++.-+++.+....+........+.+++.
T Consensus 138 ~~~~~~~~~~~L~~~-~G~L~~v~~~~~~-------~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~ 209 (230)
T TIGR01640 138 CGNSDSVDYLSLINY-KGKLAVLKQKKDT-------NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGE 209 (230)
T ss_pred ccccccccceEEEEE-CCEEEEEEecCCC-------CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCE
Confidence 11 13457776 7999988754321 2489999985 456799987776322222221122344556788
Q ss_pred EEEEEcc-cCc-EEEEEee
Q 041767 291 VCFSAKR-VGR-LALWECE 307 (341)
Q Consensus 291 i~~~~~~-~~~-v~~yD~~ 307 (341)
|++.... ... ++.||++
T Consensus 210 I~~~~~~~~~~~~~~y~~~ 228 (230)
T TIGR01640 210 IVLCCEDENPFYIFYYNVG 228 (230)
T ss_pred EEEEeCCCCceEEEEEecc
Confidence 8776543 223 9999998
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.66 E-value=7.7e-15 Score=121.96 Aligned_cols=229 Identities=15% Similarity=0.216 Sum_probs=150.4
Q ss_pred CCceEEEeeCCCCcEEEeeCC-----------CCCC--CCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecC
Q 041767 47 SAAALHVYDPNQNQWLRFDLS-----------FLPF--RSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVL 113 (341)
Q Consensus 47 ~~~~~~~yd~~~~~W~~l~~~-----------~~p~--~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~l 113 (341)
...+++++|..+-+|..+|.- ..|. .++. +....+.+|+.||..+.+...+.++.|||.|++|++.
T Consensus 42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHt-vV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p 120 (392)
T KOG4693|consen 42 DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHT-VVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKP 120 (392)
T ss_pred CcceeEEeeccceeEEecCcccccccccCCCCccchhhcCce-EEEEcceEEEEcCccCcccccceeeeecccccccccc
Confidence 356789999999999998741 1232 2343 6677899999998755566788999999999999974
Q ss_pred CC---CCCCCceeEEEEEcCCCcEEEEcC----------eEEEEEcCCCccccccccCCCCCCCc-----ccccCceEEE
Q 041767 114 PQ---LGSAWSKHGSVLVDSLNKVMVLTE----------LAALFFSNSNHWLKFSSNLPSKPRSP-----ILMLNSVYAL 175 (341)
Q Consensus 114 p~---~~~~~~~~~~~~~~~~~ki~~~g~----------~~evYd~~t~~W~~~~~~~p~~~r~~-----~~~~~~~y~~ 175 (341)
.- .+..|.-|.+++. +...|+.|+ .+.++|..|.+|+.+.. ...-+|.. ....+..|++
T Consensus 121 ~v~G~vPgaRDGHsAcV~--gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~T-kg~PprwRDFH~a~~~~~~MYiF 197 (392)
T KOG4693|consen 121 EVEGFVPGARDGHSACVW--GNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHT-KGDPPRWRDFHTASVIDGMMYIF 197 (392)
T ss_pred ceeeecCCccCCceeeEE--CcEEEEecChHHHHHhhhccceeEeccceeeeehhc-cCCCchhhhhhhhhhccceEEEe
Confidence 32 2334545656665 667888772 68899999999999874 22112222 1234566887
Q ss_pred eecCCCcCCcceeeEeecccCC-CCceeEEEcccccccccc------cccCCccEEEEeCCEEEEEEeeccccccccccc
Q 041767 176 CDVGSPWRSQWKLFCCNLSSLT-NSQQFWHCLERREWGDVF------DILKRPRLVRGVGNRILMIGGLKSSFTLNASCS 248 (341)
Q Consensus 176 ~~~G~~~~~~~~~~~~~~~~~~-~~~v~~yD~~~~~W~~~~------~~~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~ 248 (341)
||.--..+ .+..+ ... .+.++.+|++++.|..-+ ...+++....+ +|+||++||+.... +. -
T Consensus 198 --GGR~D~~g--pfHs~--~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYng~l--n~--H 266 (392)
T KOG4693|consen 198 --GGRSDESG--PFHSI--HEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYNGTL--NV--H 266 (392)
T ss_pred --ccccccCC--Cccch--hhhhcceeEEEeccccccccCCCCCcCCCcccccceEEE-cceEEEecccchhh--hh--h
Confidence 34100000 00000 011 247999999999998865 23345667776 89999999986531 11 1
Q ss_pred eEEEEEEeCCCCcEEEec---cCCHHHHHhhcCCCceEEEecCCEEEEEEcc
Q 041767 249 TILILRLDLDLLEWEEAG---RMPVEMYRCFSESSKFKVFGMGDKVCFSAKR 297 (341)
Q Consensus 249 ~~~vw~~d~~~~~W~~~~---~mp~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 297 (341)
--++|.|||.+..|..|. +-|.++.+. .++..++++|+.++.
T Consensus 267 fndLy~FdP~t~~W~~I~~~Gk~P~aRRRq-------C~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 267 FNDLYCFDPKTSMWSVISVRGKYPSARRRQ-------CSVVSGGKVYLFGGT 311 (392)
T ss_pred hcceeecccccchheeeeccCCCCCcccce-------eEEEECCEEEEecCC
Confidence 236899999999999985 355554331 234457889887764
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.28 E-value=3.9e-11 Score=100.12 Aligned_cols=176 Identities=14% Similarity=0.253 Sum_probs=116.4
Q ss_pred CCceEEEeeCCCCcEEEeeC-CCCCC--CCcceeeccCCEEEEecCCCCC-CCCCceEEEEcCcccceecCCCC---CCC
Q 041767 47 SAAALHVYDPNQNQWLRFDL-SFLPF--RSLHPVASSPGLIYLWGDLPDS-PESNKSLIACNPLTRLYRVLPQL---GSA 119 (341)
Q Consensus 47 ~~~~~~~yd~~~~~W~~l~~-~~~p~--~~~~~~~~~~glv~~~g~~~~~-~~~~~~~~v~nP~t~~w~~lp~~---~~~ 119 (341)
....+..|||++..|.+... .+.|. .+++ .++.|...|+.||..+. ..-..+++++|-.|-+|+.+-.- +.-
T Consensus 103 aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHs-AcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw 181 (392)
T KOG4693|consen 103 ACNLLYEFDPETNVWKKPEVEGFVPGARDGHS-ACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRW 181 (392)
T ss_pred ccceeeeeccccccccccceeeecCCccCCce-eeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchh
Confidence 46778899999999997542 23442 3454 78889999999986322 12256799999999999987543 223
Q ss_pred CceeEEEEEcCCCcEEEEc-----------------CeEEEEEcCCCccccccc--cCCCCCCCcc--cccCceEEEeec
Q 041767 120 WSKHGSVLVDSLNKVMVLT-----------------ELAALFFSNSNHWLKFSS--NLPSKPRSPI--LMLNSVYALCDV 178 (341)
Q Consensus 120 ~~~~~~~~~~~~~ki~~~g-----------------~~~evYd~~t~~W~~~~~--~~p~~~r~~~--~~~~~~y~~~~~ 178 (341)
|.+|.+.+. +++.|+.| +.+.++|.+|+.|...+. ..|..+|+.. ..++.+|++ |
T Consensus 182 RDFH~a~~~--~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~F--G 257 (392)
T KOG4693|consen 182 RDFHTASVI--DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMF--G 257 (392)
T ss_pred hhhhhhhhc--cceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEe--c
Confidence 344554444 47788776 257788999999987653 2344445442 356788888 3
Q ss_pred CCCcCCcceeeEeecccCCCCceeEEEccccccccccc------ccCCccEEEEeCCEEEEEEeec
Q 041767 179 GSPWRSQWKLFCCNLSSLTNSQQFWHCLERREWGDVFD------ILKRPRLVRGVGNRILMIGGLK 238 (341)
Q Consensus 179 G~~~~~~~~~~~~~~~~~~~~~v~~yD~~~~~W~~~~~------~~~~~~lv~~~~g~l~vvgg~~ 238 (341)
| +...++ .-.+.+.+|||++..|+.|.. ..++...+. .|+|+|++||..
T Consensus 258 G---------Yng~ln-~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v-~g~kv~LFGGTs 312 (392)
T KOG4693|consen 258 G---------YNGTLN-VHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVV-SGGKVYLFGGTS 312 (392)
T ss_pred c---------cchhhh-hhhcceeecccccchheeeeccCCCCCcccceeEEE-ECCEEEEecCCC
Confidence 3 222221 113468999999999999862 112223344 389999999864
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.16 E-value=1.5e-09 Score=102.83 Aligned_cols=198 Identities=18% Similarity=0.258 Sum_probs=130.9
Q ss_pred eEEEeeCCCCcEEEeeC-CC--CCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCC---CCCCcee
Q 041767 50 ALHVYDPNQNQWLRFDL-SF--LPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQL---GSAWSKH 123 (341)
Q Consensus 50 ~~~~yd~~~~~W~~l~~-~~--~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~---~~~~~~~ 123 (341)
.++++|..+..|..... -. .|+.++. +++.+..||+.||..........++.||+.|++|..+.+. +.+|..|
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~-~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~H 167 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHS-LSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGH 167 (482)
T ss_pred eeEEeecCCcccccccccCCCCCccccee-EEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccc
Confidence 58999999999987552 11 2333444 7777889999988743333356899999999999998764 3456667
Q ss_pred EEEEEcCCCcEEEEc---------CeEEEEEcCCCccccccc--cCCCCCCCc---ccccCceEEEeecCCCcCCcceee
Q 041767 124 GSVLVDSLNKVMVLT---------ELAALFFSNSNHWLKFSS--NLPSKPRSP---ILMLNSVYALCDVGSPWRSQWKLF 189 (341)
Q Consensus 124 ~~~~~~~~~ki~~~g---------~~~evYd~~t~~W~~~~~--~~p~~~r~~---~~~~~~~y~~~~~G~~~~~~~~~~ 189 (341)
.+++. +.++|+.| +.+++||.++.+|..+.. ..| .+|.. +...+..+++ . |.
T Consensus 168 s~~~~--g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P-~pR~gH~~~~~~~~~~v~-g-G~--------- 233 (482)
T KOG0379|consen 168 SATVV--GTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP-SPRYGHAMVVVGNKLLVF-G-GG--------- 233 (482)
T ss_pred eEEEE--CCEEEEECCccCcccceeeeeeeccccccceecccCCCCC-CCCCCceEEEECCeEEEE-e-cc---------
Confidence 66665 57999987 369999999999998863 223 23432 1233344444 2 31
Q ss_pred EeecccCCCCceeEEEccccccccccc--c----cCCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEE
Q 041767 190 CCNLSSLTNSQQFWHCLERREWGDVFD--I----LKRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWE 263 (341)
Q Consensus 190 ~~~~~~~~~~~v~~yD~~~~~W~~~~~--~----~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~ 263 (341)
+ ....-++.+..+|+.+.+|..++. . ...+.++. .+.+++++||..... .... -++|.++.++..|.
T Consensus 234 -~-~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~-~~~~~~l~gG~~~~~--~~~l--~~~~~l~~~~~~w~ 306 (482)
T KOG0379|consen 234 -D-DGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTV-SGDHLLLFGGGTDPK--QEPL--GDLYGLDLETLVWS 306 (482)
T ss_pred -c-cCCceecceEeeecccceeeeccccCCCCCCcceeeeEE-ECCEEEEEcCCcccc--cccc--ccccccccccccee
Confidence 1 011113468999999999996641 1 11244554 588999999875420 0011 36788988899999
Q ss_pred EeccCC
Q 041767 264 EAGRMP 269 (341)
Q Consensus 264 ~~~~mp 269 (341)
++..+.
T Consensus 307 ~~~~~~ 312 (482)
T KOG0379|consen 307 KVESVG 312 (482)
T ss_pred eeeccc
Confidence 987665
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.06 E-value=1.1e-08 Score=96.98 Aligned_cols=218 Identities=17% Similarity=0.195 Sum_probs=136.0
Q ss_pred CCCcceeeccCCEEEEecCCCCCCCCCc-eEEEEcCcccceecCCCCC---CCCceeEEEEEcCCCcEEEEcC-------
Q 041767 71 FRSLHPVASSPGLIYLWGDLPDSPESNK-SLIACNPLTRLYRVLPQLG---SAWSKHGSVLVDSLNKVMVLTE------- 139 (341)
Q Consensus 71 ~~~~~~~~~~~glv~~~g~~~~~~~~~~-~~~v~nP~t~~w~~lp~~~---~~~~~~~~~~~~~~~ki~~~g~------- 139 (341)
+..+. +..++..+++.||......... +++++|-.+..|...+.-. .++.-+.++++ +.++|++|+
T Consensus 61 R~~hs-~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~--~~~l~lfGG~~~~~~~ 137 (482)
T KOG0379|consen 61 RAGHS-AVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV--GDKLYLFGGTDKKYRN 137 (482)
T ss_pred hhccc-eeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEE--CCeEEEEccccCCCCC
Confidence 34444 4455788888887643221112 5999999999999876532 23333334444 579999873
Q ss_pred --eEEEEEcCCCccccccc--cCCCCCCCc---ccccCceEEEeecCCCcCCcceeeEeecccCCCCceeEEEccccccc
Q 041767 140 --LAALFFSNSNHWLKFSS--NLPSKPRSP---ILMLNSVYALCDVGSPWRSQWKLFCCNLSSLTNSQQFWHCLERREWG 212 (341)
Q Consensus 140 --~~evYd~~t~~W~~~~~--~~p~~~r~~---~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~~~~~v~~yD~~~~~W~ 212 (341)
.+..||..|++|+.+.. ..| .+|.. +.....+|++ ||..+ .....+.+.+||+++.+|.
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P-~~r~~Hs~~~~g~~l~vf--GG~~~-----------~~~~~ndl~i~d~~~~~W~ 203 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPP-PPRAGHSATVVGTKLVVF--GGIGG-----------TGDSLNDLHIYDLETSTWS 203 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCC-CCcccceEEEECCEEEEE--CCccC-----------cccceeeeeeeccccccce
Confidence 57899999999998763 123 22332 1233456766 34111 0001346899999999999
Q ss_pred cccc------ccCCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEec---cCCHHHHHhhcCCCceE
Q 041767 213 DVFD------ILKRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAG---RMPVEMYRCFSESSKFK 283 (341)
Q Consensus 213 ~~~~------~~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~---~mp~~~~~~~~~~~~~~ 283 (341)
++.. ....+.++.. +++++++||.+.. +... -++|.||-.+.+|.++. .+|.++.. +.
T Consensus 204 ~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~---~~~l--~D~~~ldl~~~~W~~~~~~g~~p~~R~~-------h~ 270 (482)
T KOG0379|consen 204 ELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDG---DVYL--NDVHILDLSTWEWKLLPTGGDLPSPRSG-------HS 270 (482)
T ss_pred ecccCCCCCCCCCCceEEEE-CCeEEEEeccccC---Ccee--cceEeeecccceeeeccccCCCCCCcce-------ee
Confidence 9751 1223556664 8999999987632 1211 26899999889999754 35555332 12
Q ss_pred EEecCCEEEEEEccc-------CcEEEEEeeeCCCCeeEEcCCCC
Q 041767 284 VFGMGDKVCFSAKRV-------GRLALWECEKGGGGEWRWIDGLP 321 (341)
Q Consensus 284 ~~~~~~~i~~~~~~~-------~~v~~yD~~~~~~~~W~~~~~~~ 321 (341)
.+..++.+++.++.. ..+..||++ +..|.++....
T Consensus 271 ~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~---~~~w~~~~~~~ 312 (482)
T KOG0379|consen 271 LTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE---TLVWSKVESVG 312 (482)
T ss_pred eEEECCEEEEEcCCccccccccccccccccc---ccceeeeeccc
Confidence 233456666655432 346788988 99999987655
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.99 E-value=1.2e-08 Score=90.41 Aligned_cols=199 Identities=15% Similarity=0.192 Sum_probs=115.9
Q ss_pred ceEEEEcCcccceecCCC--CCCCCceeEEEEEcCCCcEEEEcC--------------eEEEEEcCCCccccccc-cCCC
Q 041767 98 KSLIACNPLTRLYRVLPQ--LGSAWSKHGSVLVDSLNKVMVLTE--------------LAALFFSNSNHWLKFSS-NLPS 160 (341)
Q Consensus 98 ~~~~v~nP~t~~w~~lp~--~~~~~~~~~~~~~~~~~ki~~~g~--------------~~evYd~~t~~W~~~~~-~~p~ 160 (341)
+.+++||..+++|+.+-. .+.+|+-|.++++ +.+.+++.|+ ..+.||..|++|+.+.. .-|
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~-~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P- 175 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAV-PSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP- 175 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEe-ccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC-
Confidence 568999999999998743 3446666666555 3456666662 47899999999999863 123
Q ss_pred CCCCcc-ccc--CceEEEeecCCCcCCcceeeEeecccCCCCceeEEEccccccccccc------ccCCccEEEEeCCEE
Q 041767 161 KPRSPI-LML--NSVYALCDVGSPWRSQWKLFCCNLSSLTNSQQFWHCLERREWGDVFD------ILKRPRLVRGVGNRI 231 (341)
Q Consensus 161 ~~r~~~-~~~--~~~y~~~~~G~~~~~~~~~~~~~~~~~~~~~v~~yD~~~~~W~~~~~------~~~~~~lv~~~~g~l 231 (341)
.+|+.. ++. ..+.+| || ++..-....| ++.|.+||+++=+|+.+.. ....+++.+.-+|.|
T Consensus 176 S~RSGHRMvawK~~lilF--GG-Fhd~nr~y~Y-------yNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILF--GG-FHDSNRDYIY-------YNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGI 245 (521)
T ss_pred CCCccceeEEeeeeEEEE--cc-eecCCCceEE-------eeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcE
Confidence 234432 222 233444 34 2211000001 2468999999999999852 112245555447889
Q ss_pred EEEEeeccccc---cccccceEEEEEEeCCC-----CcEEEecc--C-CHHHHHhhcCCCceEEEecCCEEEEEEcc---
Q 041767 232 LMIGGLKSSFT---LNASCSTILILRLDLDL-----LEWEEAGR--M-PVEMYRCFSESSKFKVFGMGDKVCFSAKR--- 297 (341)
Q Consensus 232 ~vvgg~~~~~~---~~~~~~~~~vw~~d~~~-----~~W~~~~~--m-p~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 297 (341)
+|.||+..... .+.....-++|.++++. ..|+++.. + |.++.. +. .+++-+++-++.++-
T Consensus 246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsg-fs-----v~va~n~kal~FGGV~D~ 319 (521)
T KOG1230|consen 246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSG-FS-----VAVAKNHKALFFGGVCDL 319 (521)
T ss_pred EEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCc-ee-----EEEecCCceEEecceecc
Confidence 99999854321 11112235689999865 57888753 2 333221 11 122222232222211
Q ss_pred -----------cCcEEEEEeeeCCCCeeEEc
Q 041767 298 -----------VGRLALWECEKGGGGEWRWI 317 (341)
Q Consensus 298 -----------~~~v~~yD~~~~~~~~W~~~ 317 (341)
.+.++.||+. .++|+..
T Consensus 320 eeeeEsl~g~F~NDLy~fdlt---~nrW~~~ 347 (521)
T KOG1230|consen 320 EEEEESLSGEFFNDLYFFDLT---RNRWSEG 347 (521)
T ss_pred cccchhhhhhhhhhhhheecc---cchhhHh
Confidence 2457899999 8999875
No 25
>PF13964 Kelch_6: Kelch motif
Probab=98.72 E-value=3.5e-08 Score=62.95 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=39.6
Q ss_pred CCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCC
Q 041767 71 FRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAW 120 (341)
Q Consensus 71 ~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~ 120 (341)
+..++ +++.+|.||+.||..+.....+.+++|||.|++|+.+|+|+.+|
T Consensus 2 R~~~s-~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHS-AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CccCE-EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 34454 78899999999987443445789999999999999999998765
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.63 E-value=1.3e-06 Score=77.83 Aligned_cols=203 Identities=21% Similarity=0.252 Sum_probs=119.5
Q ss_pred CCceEEEeeCCCCcEEEeeCCC--CCCCCcceeeccCCEEEEecCCCCCCC-----CCceEEEEcCcccceecCCCC--C
Q 041767 47 SAAALHVYDPNQNQWLRFDLSF--LPFRSLHPVASSPGLIYLWGDLPDSPE-----SNKSLIACNPLTRLYRVLPQL--G 117 (341)
Q Consensus 47 ~~~~~~~yd~~~~~W~~l~~~~--~p~~~~~~~~~~~glv~~~g~~~~~~~-----~~~~~~v~nP~t~~w~~lp~~--~ 117 (341)
.+..+..||...+.|..+..|. .|++.++.++.-.|.+++.||...+.+ .-+.+++++..|++|.+|..- +
T Consensus 96 vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 96 VYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred EeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 4567889999999999987543 566778766666678888887522111 135789999999999998654 3
Q ss_pred CCCceeEEEEEcCCCcEEEEc------------CeEEEEEcCCCcccccccc--CCCCCCCc--c--cccCceEEEeecC
Q 041767 118 SAWSKHGSVLVDSLNKVMVLT------------ELAALFFSNSNHWLKFSSN--LPSKPRSP--I--LMLNSVYALCDVG 179 (341)
Q Consensus 118 ~~~~~~~~~~~~~~~ki~~~g------------~~~evYd~~t~~W~~~~~~--~p~~~r~~--~--~~~~~~y~~~~~G 179 (341)
++|.-|-+++- -.++++.| +.+++||..|-+|..+..+ -| .+|+. . ...|++++. ||
T Consensus 176 S~RSGHRMvaw--K~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~P-tpRSGcq~~vtpqg~i~vy--GG 250 (521)
T KOG1230|consen 176 SPRSGHRMVAW--KRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGP-TPRSGCQFSVTPQGGIVVY--GG 250 (521)
T ss_pred CCCccceeEEe--eeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCC-CCCCcceEEecCCCcEEEE--cc
Confidence 45544434332 23555554 4799999999999998631 12 34443 1 123566665 23
Q ss_pred CCcCCcceeeEee-cccC------CCCceeEEEccc-----cccccccc-----ccCC-ccEEEEeCCEEEEEEeecc-c
Q 041767 180 SPWRSQWKLFCCN-LSSL------TNSQQFWHCLER-----REWGDVFD-----ILKR-PRLVRGVGNRILMIGGLKS-S 240 (341)
Q Consensus 180 ~~~~~~~~~~~~~-~~~~------~~~~v~~yD~~~-----~~W~~~~~-----~~~~-~~lv~~~~g~l~vvgg~~~-~ 240 (341)
|+- .... ....+...+++. =+|..|.. ..+. ..+....+++-+.+||+.+ +
T Consensus 251 ----------YsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~e 320 (521)
T KOG1230|consen 251 ----------YSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLE 320 (521)
T ss_pred ----------hhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceeccc
Confidence 111 1100 123566777776 24666642 1111 1222224779999998754 1
Q ss_pred c---ccccccceEEEEEEeCCCCcEEEe
Q 041767 241 F---TLNASCSTILILRLDLDLLEWEEA 265 (341)
Q Consensus 241 ~---~~~~~~~~~~vw~~d~~~~~W~~~ 265 (341)
- .+.+.. .-++|.||...+.|.+.
T Consensus 321 eeeEsl~g~F-~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 321 EEEESLSGEF-FNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ccchhhhhhh-hhhhhheecccchhhHh
Confidence 0 000100 11467777778888863
No 27
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.53 E-value=1.9e-06 Score=78.67 Aligned_cols=226 Identities=17% Similarity=0.233 Sum_probs=119.6
Q ss_pred CcEEEeeCC--CC--CCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCC---CCCCceeEEEEEcCC
Q 041767 59 NQWLRFDLS--FL--PFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQL---GSAWSKHGSVLVDSL 131 (341)
Q Consensus 59 ~~W~~l~~~--~~--p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~---~~~~~~~~~~~~~~~ 131 (341)
-+|+++... .. |++++. ..+...||.+.||..+ .-..++++||-.|++|..-+-- +..-..+++ ++ .+
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHR-AVaikELiviFGGGNE--GiiDELHvYNTatnqWf~PavrGDiPpgcAA~Gf-vc-dG 91 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHR-AVAIKELIVIFGGGNE--GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGF-VC-DG 91 (830)
T ss_pred cceEEEecccCCCCCccccch-heeeeeeEEEecCCcc--cchhhhhhhccccceeecchhcCCCCCchhhcce-Ee-cC
Confidence 468887621 12 445666 5667888888876522 2356799999999999863211 111111222 23 25
Q ss_pred CcEEEEcCe-------EEEEEcCCC--cccccccc-----CCCCCCCcc---cccCceEEEeecCCCcCCcceeeEeecc
Q 041767 132 NKVMVLTEL-------AALFFSNSN--HWLKFSSN-----LPSKPRSPI---LMLNSVYALCDVGSPWRSQWKLFCCNLS 194 (341)
Q Consensus 132 ~ki~~~g~~-------~evYd~~t~--~W~~~~~~-----~p~~~r~~~---~~~~~~y~~~~~G~~~~~~~~~~~~~~~ 194 (341)
.||++.|+- -+.|....- .|+++... .|..+|... +..++.|+| || + -.....
T Consensus 92 trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlF--GG-L-------aNdseD 161 (830)
T KOG4152|consen 92 TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLF--GG-L-------ANDSED 161 (830)
T ss_pred ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEe--cc-c-------cccccC
Confidence 699999853 344555544 45665421 112334332 234567887 33 1 000000
Q ss_pred cCC-----CCceeEEEcccc----cccc------cccccCCccEEEE-e----CCEEEEEEeeccccccccccceEEEEE
Q 041767 195 SLT-----NSQQFWHCLERR----EWGD------VFDILKRPRLVRG-V----GNRILMIGGLKSSFTLNASCSTILILR 254 (341)
Q Consensus 195 ~~~-----~~~v~~yD~~~~----~W~~------~~~~~~~~~lv~~-~----~g~l~vvgg~~~~~~~~~~~~~~~vw~ 254 (341)
..+ ++.+...++..+ .|.. ++....++..|.+ + ..++++.||..+.. -=++|.
T Consensus 162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R-------LgDLW~ 234 (830)
T KOG4152|consen 162 PKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR-------LGDLWT 234 (830)
T ss_pred cccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc-------ccceeE
Confidence 000 122333333322 2543 1222334555543 1 24899999875531 126899
Q ss_pred EeCCCCcEEEe-----ccCCHHHHHhhcCCCceEEEecCCEEEEEEc-------------------ccCcEEEEEeeeCC
Q 041767 255 LDLDLLEWEEA-----GRMPVEMYRCFSESSKFKVFGMGDKVCFSAK-------------------RVGRLALWECEKGG 310 (341)
Q Consensus 255 ~d~~~~~W~~~-----~~mp~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------------~~~~v~~yD~~~~~ 310 (341)
+|-++..|.+. ..||..++.. +..||++|+.++ ....+.+.++.
T Consensus 235 Ldl~Tl~W~kp~~~G~~PlPRSLHsa---------~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNld--- 302 (830)
T KOG4152|consen 235 LDLDTLTWNKPSLSGVAPLPRSLHSA---------TTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLD--- 302 (830)
T ss_pred EecceeecccccccCCCCCCcccccc---------eeecceeEEecceeeeeccccccccccceeeeccceeeeeec---
Confidence 99999999984 3455444332 223444444322 13556788888
Q ss_pred CCeeEEcC
Q 041767 311 GGEWRWID 318 (341)
Q Consensus 311 ~~~W~~~~ 318 (341)
+..|..+-
T Consensus 303 t~~W~tl~ 310 (830)
T KOG4152|consen 303 TMAWETLL 310 (830)
T ss_pred chheeeee
Confidence 88898753
No 28
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.20 E-value=6.3e-07 Score=56.20 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=36.4
Q ss_pred CCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCC
Q 041767 72 RSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLG 117 (341)
Q Consensus 72 ~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~ 117 (341)
..+. +++.++.||+.||........+.+++|||.+++|+.+|+|+
T Consensus 3 ~~~~-~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 3 SGHA-AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp BSEE-EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred ccCE-EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 3443 88899999999986433445678999999999999999985
No 29
>PF13964 Kelch_6: Kelch motif
Probab=98.20 E-value=2.2e-06 Score=54.50 Aligned_cols=45 Identities=27% Similarity=0.363 Sum_probs=34.5
Q ss_pred ccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHH
Q 041767 221 PRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVE 271 (341)
Q Consensus 221 ~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~ 271 (341)
+.++.+ +++||++||..... . ..-+||.||+++++|+++++||.+
T Consensus 5 ~s~v~~-~~~iyv~GG~~~~~---~--~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 5 HSAVVV-GGKIYVFGGYDNSG---K--YSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CEEEEE-CCEEEEECCCCCCC---C--ccccEEEEcCCCCcEEECCCCCCC
Confidence 456664 89999999986521 1 123688999999999999999865
No 30
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.13 E-value=0.00047 Score=62.48 Aligned_cols=83 Identities=14% Similarity=0.314 Sum_probs=51.6
Q ss_pred ccEEEEeCCEEEEEEeeccccc-------c-ccccceEEEEEEeCCCCcEEEeccCCHHHHHhhcC-CCceEEE-----e
Q 041767 221 PRLVRGVGNRILMIGGLKSSFT-------L-NASCSTILILRLDLDLLEWEEAGRMPVEMYRCFSE-SSKFKVF-----G 286 (341)
Q Consensus 221 ~~lv~~~~g~l~vvgg~~~~~~-------~-~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~~~~~~-~~~~~~~-----~ 286 (341)
..+|++ +|+|++|........ . ......++||++|.+..+|+++.+|.... -+.+ +..+.+. |
T Consensus 250 ~yLVEs-~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~a--LFlG~~~s~sv~a~e~pG 326 (373)
T PLN03215 250 RRFVEC-CGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNA--FVMATDTCFSVLAHEFYG 326 (373)
T ss_pred eeEEEE-CCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeE--EEEECCccEEEecCCCCC
Confidence 468887 789999986522100 0 01123589999999889999999986431 1122 1122222 2
Q ss_pred -cCCEEEEEEcccCcEEEEEeee
Q 041767 287 -MGDKVCFSAKRVGRLALWECEK 308 (341)
Q Consensus 287 -~~~~i~~~~~~~~~v~~yD~~~ 308 (341)
.+|.||+.... ...+||++.
T Consensus 327 ~k~NcIYFtdd~--~~~v~~~~d 347 (373)
T PLN03215 327 CLPNSIYFTEDT--MPKVFKLDN 347 (373)
T ss_pred ccCCEEEEECCC--cceEEECCC
Confidence 26889987643 356999994
No 31
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.08 E-value=7.1e-05 Score=65.87 Aligned_cols=182 Identities=13% Similarity=0.143 Sum_probs=100.1
Q ss_pred CCcEEEee-CCCCCCCCcceeeccCCEEEEecCCCCCCC----CCceEEEEcCcccceecCCCCCCCCceeEEEEEc-CC
Q 041767 58 QNQWLRFD-LSFLPFRSLHPVASSPGLIYLWGDLPDSPE----SNKSLIACNPLTRLYRVLPQLGSAWSKHGSVLVD-SL 131 (341)
Q Consensus 58 ~~~W~~l~-~~~~p~~~~~~~~~~~glv~~~g~~~~~~~----~~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~~~-~~ 131 (341)
...|.++. .|-.++ +-.+.+.++|.||+.++...... ..+.+++|||.+++|..|.... ++...+...+. .+
T Consensus 69 ~k~W~~~a~FpG~~r-nqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~G~~~~~~~~ 146 (381)
T COG3055 69 GKGWTKIADFPGGAR-NQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLVGASTFSLNG 146 (381)
T ss_pred CCCceEcccCCCccc-ccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccccccceeEecCC
Confidence 45799887 343343 33357888999999887543211 2457899999999999987643 33343322222 23
Q ss_pred CcEEEEcCe-EEEEEc----------CCCccccccccCCCCCCCcccccCceEEEeecCCCcCCcceeeEeecccCCCCc
Q 041767 132 NKVMVLTEL-AALFFS----------NSNHWLKFSSNLPSKPRSPILMLNSVYALCDVGSPWRSQWKLFCCNLSSLTNSQ 200 (341)
Q Consensus 132 ~ki~~~g~~-~evYd~----------~t~~W~~~~~~~p~~~r~~~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~~~~~ 200 (341)
.+|++.|+. -++||- ....|..+-. +++ +.. .....-...
T Consensus 147 ~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~----------------~yf---~~~----------~~dy~~n~e 197 (381)
T COG3055 147 TKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIA----------------HYF---DKK----------AEDYFFNKE 197 (381)
T ss_pred ceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHH----------------HHh---CCC----------HHHhccccc
Confidence 499998742 122211 1112222110 001 100 000000135
Q ss_pred eeEEEcccccccccc--cccCC-ccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHHHH
Q 041767 201 QFWHCLERREWGDVF--DILKR-PRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMY 273 (341)
Q Consensus 201 v~~yD~~~~~W~~~~--~~~~~-~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~ 273 (341)
+.+|||.+++|+.+. ++... ...+...++++.+|.|.--.. .....+....+.....+|.++..+|.+..
T Consensus 198 v~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpG---LRt~~~k~~~~~~~~~~w~~l~~lp~~~~ 270 (381)
T COG3055 198 VLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPG---LRTAEVKQADFGGDNLKWLKLSDLPAPIG 270 (381)
T ss_pred ccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCC---ccccceeEEEeccCceeeeeccCCCCCCC
Confidence 889999999999875 22222 222222477899998763321 11122344455556778999988876543
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.02 E-value=2.5e-05 Score=48.82 Aligned_cols=43 Identities=35% Similarity=0.490 Sum_probs=33.0
Q ss_pred ccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCC
Q 041767 221 PRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMP 269 (341)
Q Consensus 221 ~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp 269 (341)
+.++.+ +++||++||.... ... .-.++.||+++++|+++++||
T Consensus 5 ~~~~~~-~~~iyv~GG~~~~---~~~--~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVV-GNKIYVIGGYDGN---NQP--TNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEE-TTEEEEEEEBEST---SSB--EEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEE-CCEEEEEeeeccc---Cce--eeeEEEEeCCCCEEEEcCCCC
Confidence 445564 9999999998762 122 236788999999999999987
No 33
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=97.85 E-value=0.00036 Score=54.04 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=48.6
Q ss_pred CceeEEEccccccccccc------ccCCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeC-CCCcEEEecc-CCH
Q 041767 199 SQQFWHCLERREWGDVFD------ILKRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDL-DLLEWEEAGR-MPV 270 (341)
Q Consensus 199 ~~v~~yD~~~~~W~~~~~------~~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~-~~~~W~~~~~-mp~ 270 (341)
..|++||+++++|+.++. ......|+++ +|+|.++...... ....++||.|++ ++.+|++... +|.
T Consensus 20 ~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~-~G~L~~v~~~~~~-----~~~~~~iWvLeD~~k~~Wsk~~~~lp~ 93 (129)
T PF08268_consen 20 NVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEY-KGKLALVSYNDQG-----EPDSIDIWVLEDYEKQEWSKKHIVLPP 93 (129)
T ss_pred cEEEEEEcCCceEEEEEeeeeeccccCccEEEEe-CCeEEEEEecCCC-----CcceEEEEEeeccccceEEEEEEECCh
Confidence 479999999999998752 1234678887 8999998754331 124589999976 5678998754 554
Q ss_pred H
Q 041767 271 E 271 (341)
Q Consensus 271 ~ 271 (341)
.
T Consensus 94 ~ 94 (129)
T PF08268_consen 94 S 94 (129)
T ss_pred H
Confidence 4
No 34
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.79 E-value=5.5e-05 Score=47.73 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=32.0
Q ss_pred cEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCC
Q 041767 222 RLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMP 269 (341)
Q Consensus 222 ~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp 269 (341)
..+. .+++||++||.... +......++|.||.++++|+++..||
T Consensus 6 s~~~-~~~kiyv~GG~~~~---~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 6 SAVV-LDGKIYVFGGYGTD---NGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred EEEE-ECCEEEEECCcccC---CCCcccceeEEEECCCCEEeecCCCC
Confidence 4455 49999999998211 12233457899999999999998875
No 35
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.75 E-value=7.3e-05 Score=47.17 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=34.1
Q ss_pred eeccCCEEEEecCC--CCCCCCCceEEEEcCcccceecCCCCC
Q 041767 77 VASSPGLIYLWGDL--PDSPESNKSLIACNPLTRLYRVLPQLG 117 (341)
Q Consensus 77 ~~~~~glv~~~g~~--~~~~~~~~~~~v~nP~t~~w~~lp~~~ 117 (341)
+++.++.||+.||. .+.....+.+.+||+.|++|+++++|+
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 77889999999987 333445678999999999999999874
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.72 E-value=9.7e-05 Score=46.60 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=36.2
Q ss_pred CCEEEEecCCC-CCCCCCceEEEEcCcccceecCCCCCCCCceeEEE
Q 041767 81 PGLIYLWGDLP-DSPESNKSLIACNPLTRLYRVLPQLGSAWSKHGSV 126 (341)
Q Consensus 81 ~glv~~~g~~~-~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~ 126 (341)
|+.||+.||.. ......+++++||+.+++|+++++++.+|..|+++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~ 47 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTAT 47 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEE
Confidence 56788888864 23445688999999999999999888888777644
No 37
>smart00612 Kelch Kelch domain.
Probab=97.72 E-value=9.3e-05 Score=45.92 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=33.3
Q ss_pred EEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCCceeEEEEE
Q 041767 84 IYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWSKHGSVLV 128 (341)
Q Consensus 84 v~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~~ 128 (341)
||+.||... ....+.+++|||.+++|..+|+|+.+|..+++++.
T Consensus 2 iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 2 IYVVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred EEEEeCCCC-CceeeeEEEECCCCCeEccCCCCCCccccceEEEe
Confidence 677777522 23367899999999999999999888877765443
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.72 E-value=8.7e-05 Score=46.79 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=25.6
Q ss_pred ccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCH
Q 041767 221 PRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPV 270 (341)
Q Consensus 221 ~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~ 270 (341)
+.++...+++||++||..... ... =++|.||.++++|+++++||.
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~---~~~--~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSG---SPL--NDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-T---EE-----EEEEETTTTEEEE--SS--
T ss_pred EEEEEEeCCeEEEECCCCCCC---ccc--CCEEEEECCCCEEEECCCCCC
Confidence 344543358999999987641 122 257999999999999998884
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.59 E-value=4e-05 Score=48.38 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=25.2
Q ss_pred CCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCC
Q 041767 71 FRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLG 117 (341)
Q Consensus 71 ~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~ 117 (341)
+..+..+...++.|++.||........+++++||+.|++|.++|+|+
T Consensus 2 R~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 2 RYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred cceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 33444333335889988885322234678999999999999998886
No 40
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.0014 Score=57.98 Aligned_cols=191 Identities=16% Similarity=0.242 Sum_probs=107.4
Q ss_pred cCCCCCCCCceeEEEEEcCCCcEEEE-c---CeEEEEEcCC--CccccccccCCCCCCCcc---cccCceEEEeecCCCc
Q 041767 112 VLPQLGSAWSKHGSVLVDSLNKVMVL-T---ELAALFFSNS--NHWLKFSSNLPSKPRSPI---LMLNSVYALCDVGSPW 182 (341)
Q Consensus 112 ~lp~~~~~~~~~~~~~~~~~~ki~~~-g---~~~evYd~~t--~~W~~~~~~~p~~~r~~~---~~~~~~y~~~~~G~~~ 182 (341)
.+|.++....+-+.... +.++|+. | ....+-|.+. ..|+.++. +|...|.++ +..+.+|++-..|.
T Consensus 29 ~lPdlPvg~KnG~Ga~i--g~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~-FpG~~rnqa~~a~~~~kLyvFgG~Gk-- 103 (381)
T COG3055 29 QLPDLPVGFKNGAGALI--GDTVYVGLGSAGTAFYVLDLKKPGKGWTKIAD-FPGGARNQAVAAVIGGKLYVFGGYGK-- 103 (381)
T ss_pred cCCCCCcccccccccee--cceEEEEeccCCccceehhhhcCCCCceEccc-CCCcccccchheeeCCeEEEeecccc--
Confidence 45665543333223333 4578774 3 2445555543 57999995 886666542 34567777722110
Q ss_pred CCcceeeEeecccCCCCceeEEEcccccccccccc----cCCccEEEEeCCEEEEEEeeccccc------c---------
Q 041767 183 RSQWKLFCCNLSSLTNSQQFWHCLERREWGDVFDI----LKRPRLVRGVGNRILMIGGLKSSFT------L--------- 243 (341)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~v~~yD~~~~~W~~~~~~----~~~~~lv~~~~g~l~vvgg~~~~~~------~--------- 243 (341)
.........+.+..||+.+++|+.+... +.-...+...+.+|++.||+...-. +
T Consensus 104 -------~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~ 176 (381)
T COG3055 104 -------SVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEA 176 (381)
T ss_pred -------CCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHH
Confidence 0000011134688999999999998621 1122233332349999998742210 0
Q ss_pred ---------cc-c---cceEEEEEEeCCCCcEEEeccCCHHHHHhhcCCCceEEEecCCEEEEEEcc------cCcEEEE
Q 041767 244 ---------NA-S---CSTILILRLDLDLLEWEEAGRMPVEMYRCFSESSKFKVFGMGDKVCFSAKR------VGRLALW 304 (341)
Q Consensus 244 ---------~~-~---~~~~~vw~~d~~~~~W~~~~~mp~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~v~~y 304 (341)
+. + .-.-+|+.++|+++.|+-++..|.-... ...++..++++.+..+. +..+..+
T Consensus 177 ~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~a------Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~ 250 (381)
T COG3055 177 VDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNA------GSAVVIKGNKLTLINGEIKPGLRTAEVKQA 250 (381)
T ss_pred HHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCcc------CcceeecCCeEEEEcceecCCccccceeEE
Confidence 00 0 1123678899999999999877743211 12345556756544322 3556788
Q ss_pred EeeeCCCCeeEEcCCCC
Q 041767 305 ECEKGGGGEWRWIDGLP 321 (341)
Q Consensus 305 D~~~~~~~~W~~~~~~~ 321 (341)
|+..+ .-+|..++++|
T Consensus 251 ~~~~~-~~~w~~l~~lp 266 (381)
T COG3055 251 DFGGD-NLKWLKLSDLP 266 (381)
T ss_pred EeccC-ceeeeeccCCC
Confidence 88732 56999998876
No 41
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.31 E-value=0.00025 Score=44.72 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=31.5
Q ss_pred CCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHHHH
Q 041767 228 GNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMY 273 (341)
Q Consensus 228 ~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~ 273 (341)
|++||++||..... .... =++|.||+++++|++++++|.++.
T Consensus 1 g~~~~vfGG~~~~~--~~~~--nd~~~~~~~~~~W~~~~~~P~~R~ 42 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG--GTRL--NDVWVFDLDTNTWTRIGDLPPPRS 42 (49)
T ss_pred CCEEEEECCcCCCC--CCEe--cCEEEEECCCCEEEECCCCCCCcc
Confidence 57999999987310 1222 268999999999999999988754
No 42
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.13 E-value=0.01 Score=54.99 Aligned_cols=185 Identities=18% Similarity=0.209 Sum_probs=102.4
Q ss_pred ceEEEeeCCCCcE--EEeeC-------CCCCCCCcceeeccCCEEEEecCCCCCC--------CCCceEEEEcCcccc--
Q 041767 49 AALHVYDPNQNQW--LRFDL-------SFLPFRSLHPVASSPGLIYLWGDLPDSP--------ESNKSLIACNPLTRL-- 109 (341)
Q Consensus 49 ~~~~~yd~~~~~W--~~l~~-------~~~p~~~~~~~~~~~glv~~~g~~~~~~--------~~~~~~~v~nP~t~~-- 109 (341)
..-.+|...+.+| +++.. |.-|+-+++ +...+..-|+.||..+.. .-.+++++.+..-+.
T Consensus 106 YsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHS-Fsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgv 184 (830)
T KOG4152|consen 106 YSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHS-FSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGV 184 (830)
T ss_pred ccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCce-eEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCce
Confidence 3334565666655 45431 111333444 555668888888753211 124567887766443
Q ss_pred --eecC---CCCCCCCceeEEEEE-c--C-CCcEEEEc-------CeEEEEEcCCCccccccc----cCCCCCCCccccc
Q 041767 110 --YRVL---PQLGSAWSKHGSVLV-D--S-LNKVMVLT-------ELAALFFSNSNHWLKFSS----NLPSKPRSPILML 169 (341)
Q Consensus 110 --w~~l---p~~~~~~~~~~~~~~-~--~-~~ki~~~g-------~~~evYd~~t~~W~~~~~----~~p~~~r~~~~~~ 169 (341)
|..+ .+.+.+|..|.+++. . + ..|+|+.| +..+..|..|-.|.+..- +||+..+......
T Consensus 185 v~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IG 264 (830)
T KOG4152|consen 185 VAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIG 264 (830)
T ss_pred EEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeec
Confidence 6543 234456666765544 2 2 23888877 367889999999987542 4553333323455
Q ss_pred CceEEEeecCCCcCCcc-eeeEeecccCC---CCceeEEEcccccccccc-----c-----ccCCccEEEEeCCEEEEEE
Q 041767 170 NSVYALCDVGSPWRSQW-KLFCCNLSSLT---NSQQFWHCLERREWGDVF-----D-----ILKRPRLVRGVGNRILMIG 235 (341)
Q Consensus 170 ~~~y~~~~~G~~~~~~~-~~~~~~~~~~~---~~~v~~yD~~~~~W~~~~-----~-----~~~~~~lv~~~~g~l~vvg 235 (341)
+++|++ || |.+-. .-.....+..+ .+++-+.++.+..|..+. + ....++.++. |.|||+-.
T Consensus 265 nKMyvf--GG--WVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi-gtRlYiWS 339 (830)
T KOG4152|consen 265 NKMYVF--GG--WVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI-GTRLYIWS 339 (830)
T ss_pred ceeEEe--cc--eeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEe-ccEEEEEe
Confidence 688988 34 11100 00000001111 235778899999998864 1 1123456664 99999998
Q ss_pred eecc
Q 041767 236 GLKS 239 (341)
Q Consensus 236 g~~~ 239 (341)
|+++
T Consensus 340 GRDG 343 (830)
T KOG4152|consen 340 GRDG 343 (830)
T ss_pred ccch
Confidence 8754
No 43
>smart00612 Kelch Kelch domain.
Probab=96.69 E-value=0.0016 Score=40.11 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=28.3
Q ss_pred EEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHHHH
Q 041767 230 RILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMY 273 (341)
Q Consensus 230 ~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~ 273 (341)
+||++||.... ... -.++.||+.+++|+++++||.++.
T Consensus 1 ~iyv~GG~~~~----~~~--~~v~~yd~~~~~W~~~~~~~~~r~ 38 (47)
T smart00612 1 KIYVVGGFDGG----QRL--KSVEVYDPETNKWTPLPSMPTPRS 38 (47)
T ss_pred CEEEEeCCCCC----cee--eeEEEECCCCCeEccCCCCCCccc
Confidence 48999987542 112 257788999999999999987643
No 44
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.51 E-value=0.23 Score=45.31 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=63.8
Q ss_pred ceEEEeeCCCCcEEEeeCCCCCCCCcceeeccCCEEEEecCCCCCCCC------CceEEEEcCc--------ccceecCC
Q 041767 49 AALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPES------NKSLIACNPL--------TRLYRVLP 114 (341)
Q Consensus 49 ~~~~~yd~~~~~W~~l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~------~~~~~v~nP~--------t~~w~~lp 114 (341)
....+||+.+..-..+|....|. ..-+..+++|-||++......... .-++++|++. +=.|+.||
T Consensus 86 ~~t~vyDt~t~av~~~P~l~~pk-~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP 164 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATGPRLHSPK-RCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLP 164 (342)
T ss_pred CCeEEEECCCCeEeccCCCCCCC-cceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCC
Confidence 33678999998766555322222 122345567779988764321111 2234556632 22578898
Q ss_pred CCCCCCce-------eEEEEEcCCCcEEEE-c-C--eEEEEEcCCCccccccc-cCC
Q 041767 115 QLGSAWSK-------HGSVLVDSLNKVMVL-T-E--LAALFFSNSNHWLKFSS-NLP 159 (341)
Q Consensus 115 ~~~~~~~~-------~~~~~~~~~~ki~~~-g-~--~~evYd~~t~~W~~~~~-~~p 159 (341)
|++..... .+.+++ .+..|++. . . .+..||..+.+|+.+++ .||
T Consensus 165 ~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 165 PPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred CCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeeccceecC
Confidence 76543221 123334 24477773 2 2 59999999999999975 466
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=96.39 E-value=0.16 Score=43.68 Aligned_cols=149 Identities=13% Similarity=0.078 Sum_probs=76.4
Q ss_pred eEEEEEcCCCccccccccCCCCCCCc-c-cccCceEEEeecCCCcCCcceeeEeecccCCCCceeEEEccc----ccccc
Q 041767 140 LAALFFSNSNHWLKFSSNLPSKPRSP-I-LMLNSVYALCDVGSPWRSQWKLFCCNLSSLTNSQQFWHCLER----REWGD 213 (341)
Q Consensus 140 ~~evYd~~t~~W~~~~~~~p~~~r~~-~-~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~~~~~v~~yD~~~----~~W~~ 213 (341)
..-.||+.+++++.+.- ......+. . +.+|.+... ||. ......+..|++.. ..|.+
T Consensus 47 ~s~~yD~~tn~~rpl~v-~td~FCSgg~~L~dG~ll~t--GG~--------------~~G~~~ir~~~p~~~~~~~~w~e 109 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTV-QTDTFCSGGAFLPDGRLLQT--GGD--------------NDGNKAIRIFTPCTSDGTCDWTE 109 (243)
T ss_pred EEEEEecCCCcEEeccC-CCCCcccCcCCCCCCCEEEe--CCC--------------CccccceEEEecCCCCCCCCceE
Confidence 46789999999988762 22222211 1 223333222 231 01112466788765 57876
Q ss_pred ccccc----CCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCC---cEEEeccCCHHHHHhhc-CCCceEEE
Q 041767 214 VFDIL----KRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLL---EWEEAGRMPVEMYRCFS-ESSKFKVF 285 (341)
Q Consensus 214 ~~~~~----~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~---~W~~~~~mp~~~~~~~~-~~~~~~~~ 285 (341)
.+..+ -.+.....-+|+++++||.... .+++-|... ....+.-+. ....... +-..+..+
T Consensus 110 ~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~-----------t~E~~P~~~~~~~~~~~~~l~-~~~~~~~~nlYP~~~l 177 (243)
T PF07250_consen 110 SPNDMQSGRWYPTATTLPDGRVLIVGGSNNP-----------TYEFWPPKGPGPGPVTLPFLS-QTSDTLPNNLYPFVHL 177 (243)
T ss_pred CcccccCCCccccceECCCCCEEEEeCcCCC-----------cccccCCccCCCCceeeecch-hhhccCccccCceEEE
Confidence 54222 1344544458999999997632 123334311 111111111 1101010 11133444
Q ss_pred ecCCEEEEEEcccCcEEEEEeeeCCCCee-EEcCCCCC
Q 041767 286 GMGDKVCFSAKRVGRLALWECEKGGGGEW-RWIDGLPG 322 (341)
Q Consensus 286 ~~~~~i~~~~~~~~~v~~yD~~~~~~~~W-~~~~~~~~ 322 (341)
.-+++|++.... ...+||.. ++++ +.+|.+|.
T Consensus 178 lPdG~lFi~an~--~s~i~d~~---~n~v~~~lP~lPg 210 (243)
T PF07250_consen 178 LPDGNLFIFANR--GSIIYDYK---TNTVVRTLPDLPG 210 (243)
T ss_pred cCCCCEEEEEcC--CcEEEeCC---CCeEEeeCCCCCC
Confidence 446778776653 46888999 7876 77888885
No 46
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.35 E-value=0.047 Score=49.78 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=69.7
Q ss_pred ceeEEEccccccccccccc--C-CccEEEEeCCEEEEEEeecccccc-ccccceEEEEEEeC--------CCCcEEEecc
Q 041767 200 QQFWHCLERREWGDVFDIL--K-RPRLVRGVGNRILMIGGLKSSFTL-NASCSTILILRLDL--------DLLEWEEAGR 267 (341)
Q Consensus 200 ~v~~yD~~~~~W~~~~~~~--~-~~~lv~~~~g~l~vvgg~~~~~~~-~~~~~~~~vw~~d~--------~~~~W~~~~~ 267 (341)
-...||+++..-..+|... + .+-.+. .||+||++......... ......+++..+++ ...+|+.+..
T Consensus 87 ~t~vyDt~t~av~~~P~l~~pk~~pisv~-VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~ 165 (342)
T PF07893_consen 87 RTLVYDTDTRAVATGPRLHSPKRCPISVS-VGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPP 165 (342)
T ss_pred CeEEEECCCCeEeccCCCCCCCcceEEEE-eCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCC
Confidence 3678999998777666421 1 233444 48999999865322100 00011467665552 3446777655
Q ss_pred CCHHHHHhhcCC-CceEEEecCCEEEEEEccc-CcEEEEEeeeCCCCeeEEcCC--CCCCCC
Q 041767 268 MPVEMYRCFSES-SKFKVFGMGDKVCFSAKRV-GRLALWECEKGGGGEWRWIDG--LPGIGD 325 (341)
Q Consensus 268 mp~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~-~~v~~yD~~~~~~~~W~~~~~--~~~~~~ 325 (341)
.|.......... -.-+++.+|..|||+.... ...+.||.. +.+|+++++ +|+.+.
T Consensus 166 PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~---~~~W~~~GdW~LPF~G~ 224 (342)
T PF07893_consen 166 PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTE---SHEWRKHGDWMLPFHGQ 224 (342)
T ss_pred CCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcC---CcceeeccceecCcCCc
Confidence 332211100000 1122333678999876531 368999999 999999987 787543
No 47
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=96.30 E-value=0.071 Score=45.78 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=60.0
Q ss_pred ceEEEeeCCCCcEEEeeCCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcc----cceecCCC-CCCCCcee
Q 041767 49 AALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLT----RLYRVLPQ-LGSAWSKH 123 (341)
Q Consensus 49 ~~~~~yd~~~~~W~~l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t----~~w~~lp~-~~~~~~~~ 123 (341)
.....||+.+++++.+....-...... ..-.+|-+...||..+ +.+.+-+|+|-+ ..|.+.+. |...|-+.
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg-~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp 121 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGG-AFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP 121 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCc-CCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECcccccCCCccc
Confidence 445679999999997764321111111 2223677777877633 356678888876 77998874 77777665
Q ss_pred EEEEEcCCCcEEEEcC----eEEEEEcC
Q 041767 124 GSVLVDSLNKVMVLTE----LAALFFSN 147 (341)
Q Consensus 124 ~~~~~~~~~ki~~~g~----~~evYd~~ 147 (341)
..... ++++|+++|+ ..|.|.++
T Consensus 122 T~~~L-~DG~vlIvGG~~~~t~E~~P~~ 148 (243)
T PF07250_consen 122 TATTL-PDGRVLIVGGSNNPTYEFWPPK 148 (243)
T ss_pred cceEC-CCCCEEEEeCcCCCcccccCCc
Confidence 43333 4789999984 35655553
No 48
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.65 E-value=1.3 Score=38.19 Aligned_cols=200 Identities=15% Similarity=0.069 Sum_probs=100.4
Q ss_pred cCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCCceeEEEEEcCCCcEEEEc-CeEEEEEcCCCccccccccC
Q 041767 80 SPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWSKHGSVLVDSLNKVMVLT-ELAALFFSNSNHWLKFSSNL 158 (341)
Q Consensus 80 ~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~~~~~~ki~~~g-~~~evYd~~t~~W~~~~~~~ 158 (341)
.+|-||+..-. ...++.++|.+++-..+.-.. ..++.+...++++|+.. ....++|+.+++++.+.. .
T Consensus 10 ~~g~l~~~D~~------~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~-~ 78 (246)
T PF08450_consen 10 RDGRLYWVDIP------GGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLAD-L 78 (246)
T ss_dssp TTTEEEEEETT------TTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEE-E
T ss_pred CCCEEEEEEcC------CCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEee-c
Confidence 36777877643 578999999998876543222 22233322457887764 467778999999988774 4
Q ss_pred CCCCCCcccccCceEEEeecCCCcCCcceeeEeecccC--CC--CceeEEEcccccccccccccCCccEEEE-eCC-EEE
Q 041767 159 PSKPRSPILMLNSVYALCDVGSPWRSQWKLFCCNLSSL--TN--SQQFWHCLERREWGDVFDILKRPRLVRG-VGN-RIL 232 (341)
Q Consensus 159 p~~~r~~~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~--~~--~~v~~yD~~~~~W~~~~~~~~~~~lv~~-~~g-~l~ 232 (341)
+.........++ + ++...|.+| +....... .. +.+..+++. ++.+.+...+..+.-+++ .+| .||
T Consensus 79 ~~~~~~~~~~ND-~-~vd~~G~ly------~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 79 PDGGVPFNRPND-V-AVDPDGNLY------VTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp ETTCSCTEEEEE-E-EE-TTS-EE------EEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred cCCCcccCCCce-E-EEcCCCCEE------EEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchhee
Confidence 311101111111 1 111223211 00110000 01 357888888 555554433434433322 234 566
Q ss_pred EEEeeccccccccccceEEEEEEeC--CCCcEEE---eccCCHHHHHhhcCCCceEEEecCCEEEEEEcccCcEEEEEee
Q 041767 233 MIGGLKSSFTLNASCSTILILRLDL--DLLEWEE---AGRMPVEMYRCFSESSKFKVFGMGDKVCFSAKRVGRLALWECE 307 (341)
Q Consensus 233 vvgg~~~~~~~~~~~~~~~vw~~d~--~~~~W~~---~~~mp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yD~~ 307 (341)
+..... . +||+++. .+..+.. +..++... +...=.++...+.||+.....+.|.+||++
T Consensus 150 v~ds~~---------~--~i~~~~~~~~~~~~~~~~~~~~~~~~~-----g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 150 VADSFN---------G--RIWRFDLDADGGELSNRRVFIDFPGGP-----GYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEETTT---------T--EEEEEEEETTTCCEEEEEEEEE-SSSS-----CEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred eccccc---------c--eeEEEeccccccceeeeeeEEEcCCCC-----cCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 654221 1 3566655 3433442 22333211 001112344467788876656889999999
Q ss_pred eCCCCeeEEcC
Q 041767 308 KGGGGEWRWID 318 (341)
Q Consensus 308 ~~~~~~W~~~~ 318 (341)
.+.-..++
T Consensus 214 ---G~~~~~i~ 221 (246)
T PF08450_consen 214 ---GKLLREIE 221 (246)
T ss_dssp ---SCEEEEEE
T ss_pred ---ccEEEEEc
Confidence 55545443
No 49
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=95.59 E-value=0.16 Score=40.96 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=40.6
Q ss_pred ceeEEEcccccc-ccccc--ccC----CccEEEEeCCEEEEEEeeccccccccccceEEEEEEeC---CCCcEEEeccCC
Q 041767 200 QQFWHCLERREW-GDVFD--ILK----RPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDL---DLLEWEEAGRMP 269 (341)
Q Consensus 200 ~v~~yD~~~~~W-~~~~~--~~~----~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~---~~~~W~~~~~mp 269 (341)
.|++||+.++++ +.++. ... ...+....+++|.++..... ...++||.|++ ...+|+++-+++
T Consensus 22 ~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~-------~~~~~IWvm~~~~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 22 FILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDE-------TSKIEIWVMKKYGYGKESWTKLFTID 94 (164)
T ss_pred EEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccC-------CccEEEEEEeeeccCcceEEEEEEEe
Confidence 589999999999 55541 111 12342223678877743211 12489999984 267899987665
Q ss_pred H
Q 041767 270 V 270 (341)
Q Consensus 270 ~ 270 (341)
.
T Consensus 95 ~ 95 (164)
T PF07734_consen 95 L 95 (164)
T ss_pred c
Confidence 3
No 50
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.38 E-value=2.1 Score=39.05 Aligned_cols=259 Identities=14% Similarity=0.129 Sum_probs=123.8
Q ss_pred ceEEEeeCCCCcEEEeeC-CCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEE--cCcccceecCCCCCCCCceeEE
Q 041767 49 AALHVYDPNQNQWLRFDL-SFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIAC--NPLTRLYRVLPQLGSAWSKHGS 125 (341)
Q Consensus 49 ~~~~~yd~~~~~W~~l~~-~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~--nP~t~~w~~lp~~~~~~~~~~~ 125 (341)
.....||..+.++..+.. .......+-.+...+.+||+..... .....+..| ++.+++...+......-.....
T Consensus 15 I~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 15 IYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred EEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 445667889998887652 1122223322445678899886531 123455444 5555566655433211112223
Q ss_pred EEEcCCC-cEEEE---cCeEEEEEcCCCc--------cccccccCCCCCCCcccccCceEEEeecCCCcCCcceeeEeec
Q 041767 126 VLVDSLN-KVMVL---TELAALFFSNSNH--------WLKFSSNLPSKPRSPILMLNSVYALCDVGSPWRSQWKLFCCNL 193 (341)
Q Consensus 126 ~~~~~~~-ki~~~---g~~~evYd~~t~~--------W~~~~~~~p~~~r~~~~~~~~~y~~~~~G~~~~~~~~~~~~~~ 193 (341)
+..++++ .+|+. ++.+.+|+...+. ++.-+. -|...|......-.+ .+.-.|. .++..
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g~~~~rq~~~h~H~v-~~~pdg~-------~v~v~- 161 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-GPNPDRQEGPHPHQV-VFSPDGR-------FVYVP- 161 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-ESSTTTTSSTCEEEE-EE-TTSS-------EEEEE-
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC-CCcccccccccceeE-EECCCCC-------EEEEE-
Confidence 3445555 45554 2578888877642 111000 010001100000001 1111111 11111
Q ss_pred ccCCCCceeEEEccccc--cccccc----ccCCccEEEE--eCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEe
Q 041767 194 SSLTNSQQFWHCLERRE--WGDVFD----ILKRPRLVRG--VGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEA 265 (341)
Q Consensus 194 ~~~~~~~v~~yD~~~~~--W~~~~~----~~~~~~lv~~--~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~ 265 (341)
....+.|..|+...+. ...... .-..|+-+.+ .+..+|++....+ .+.++.+++....++.+
T Consensus 162 -dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~---------~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 162 -DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN---------TVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp -ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT---------EEEEEEEETTTTEEEEE
T ss_pred -ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC---------cEEEEeecccCCceeEE
Confidence 0112467888887655 433221 1112333332 2457888874432 47788888666677765
Q ss_pred cc---CCHHHHHhhcCC---CceEEEecCCEEEEEEcccCcEEEEEeeeCCCCeeEEcCCCCCCCCCCeeeEEeecc
Q 041767 266 GR---MPVEMYRCFSES---SKFKVFGMGDKVCFSAKRVGRLALWECEKGGGGEWRWIDGLPGIGDGPCRGFVYEAS 336 (341)
Q Consensus 266 ~~---mp~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~v~~yD~~~~~~~~W~~~~~~~~~~~~~~~~~~~~p~ 336 (341)
.. +|.. .... ..+.+...+..+|+..+..+.|.+|++... +.+.+.+...+..+ ....+|.|.|.
T Consensus 232 ~~~~~~~~~----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~l~~~~~~~~~G-~~Pr~~~~s~~ 302 (345)
T PF10282_consen 232 QTISTLPEG----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA-TGTLTLVQTVPTGG-KFPRHFAFSPD 302 (345)
T ss_dssp EEEESCETT----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-TTTEEEEEEEEESS-SSEEEEEE-TT
T ss_pred EEeeecccc----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-CCceEEEEEEeCCC-CCccEEEEeCC
Confidence 53 4432 1111 134445567889998888889999999521 34555555544321 13556666554
No 51
>PLN02772 guanylate kinase
Probab=93.78 E-value=0.29 Score=44.96 Aligned_cols=62 Identities=8% Similarity=0.085 Sum_probs=43.7
Q ss_pred eeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCC---CCCCCceeEEEEEcCCCcEEEEc
Q 041767 76 PVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQ---LGSAWSKHGSVLVDSLNKVMVLT 138 (341)
Q Consensus 76 ~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~---~~~~~~~~~~~~~~~~~ki~~~g 138 (341)
.+...+..+|+.||..+.......+++||+.|++|...+- .|.+|.-|.+++. .+++|++++
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~-~~~rilv~~ 93 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVL-NKDRILVIK 93 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEE-CCceEEEEe
Confidence 3677889999999863322246789999999999997542 2345555656655 256999986
No 52
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=93.70 E-value=0.036 Score=51.42 Aligned_cols=116 Identities=13% Similarity=0.192 Sum_probs=69.3
Q ss_pred CceeEEEccccccccccc------ccCCccEEEE-eCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHH
Q 041767 199 SQQFWHCLERREWGDVFD------ILKRPRLVRG-VGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVE 271 (341)
Q Consensus 199 ~~v~~yD~~~~~W~~~~~------~~~~~~lv~~-~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~ 271 (341)
.....|....++|..+-. ...++++|.- -..+||++|-+-+...-......-++|+||-+++.|..+. |...
T Consensus 288 ~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls-~dt~ 366 (723)
T KOG2437|consen 288 ADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLS-EDTA 366 (723)
T ss_pred HHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEec-cccc
Confidence 467899999999988642 2335666641 1349999995532110011112347999999999999864 2222
Q ss_pred HHH--hhcCCCceEEEecCCEEEEEEcc--------cCcEEEEEeeeCCCCeeEEcC
Q 041767 272 MYR--CFSESSKFKVFGMGDKVCFSAKR--------VGRLALWECEKGGGGEWRWID 318 (341)
Q Consensus 272 ~~~--~~~~~~~~~~~~~~~~i~~~~~~--------~~~v~~yD~~~~~~~~W~~~~ 318 (341)
--. +.+-+.+..+.+..+.||+.++. -+++.+||.. ...|+.+.
T Consensus 367 ~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~---~~~w~~l~ 420 (723)
T KOG2437|consen 367 ADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQ---CQTWKLLR 420 (723)
T ss_pred ccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecC---CccHHHHH
Confidence 000 00002233333444558887754 1568899999 88998754
No 53
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.48 E-value=1.5 Score=38.03 Aligned_cols=142 Identities=17% Similarity=0.252 Sum_probs=81.1
Q ss_pred ceEEEeeCCCCcEEEeeCCC---------------CCC--CCcceeeccCCEEEEecCCCCCCCCCceEEEEcCccccee
Q 041767 49 AALHVYDPNQNQWLRFDLSF---------------LPF--RSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYR 111 (341)
Q Consensus 49 ~~~~~yd~~~~~W~~l~~~~---------------~p~--~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~ 111 (341)
....+||+.-+-|..-..-. .|. ....+++.-+|-|++..-. .+-+...||.+..=.
T Consensus 150 let~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla------gnaiaridp~~~~ae 223 (353)
T COG4257 150 LETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLA------GNAIARIDPFAGHAE 223 (353)
T ss_pred ccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEecc------ccceEEcccccCCcc
Confidence 33456787777776432110 121 1223466667877766432 456888999999777
Q ss_pred cCCCCCCCCceeE-EEEEcCCCcEEEEc---CeEEEEEcCCCccccccccCCCC-CCCcccccCceEEEeecCCCcCCcc
Q 041767 112 VLPQLGSAWSKHG-SVLVDSLNKVMVLT---ELAALFFSNSNHWLKFSSNLPSK-PRSPILMLNSVYALCDVGSPWRSQW 186 (341)
Q Consensus 112 ~lp~~~~~~~~~~-~~~~~~~~ki~~~g---~~~evYd~~t~~W~~~~~~~p~~-~r~~~~~~~~~y~~~~~G~~~~~~~ 186 (341)
.+|+... ..... .+-.|+-+++.+.. .....||+.+.+|++-. ||.. +|.. +++|- +-|..|.
T Consensus 224 v~p~P~~-~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eyp--LPgs~arpy-----s~rVD-~~grVW~--- 291 (353)
T COG4257 224 VVPQPNA-LKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYP--LPGSKARPY-----SMRVD-RHGRVWL--- 291 (353)
T ss_pred eecCCCc-ccccccccccCccCcEEEeccCCceeeEeCcccccceeee--CCCCCCCcc-----eeeec-cCCcEEe---
Confidence 7776531 11111 22234455666643 57999999999998864 6632 2211 23331 1132221
Q ss_pred eeeEeecccCCCCceeEEEcccccccccc
Q 041767 187 KLFCCNLSSLTNSQQFWHCLERREWGDVF 215 (341)
Q Consensus 187 ~~~~~~~~~~~~~~v~~yD~~~~~W~~~~ 215 (341)
+.-..+.+..||+++.++++++
T Consensus 292 -------sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 292 -------SEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred -------eccccCceeecCcccceEEEec
Confidence 1111246899999999999886
No 54
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=93.36 E-value=0.077 Score=49.30 Aligned_cols=145 Identities=17% Similarity=0.233 Sum_probs=83.4
Q ss_pred CCCCcEEEeeCCC--------CC--CCCcceeeccCC--EEEEecCCCCCCCCCceEEEEcCcccceecCCC---CCCCC
Q 041767 56 PNQNQWLRFDLSF--------LP--FRSLHPVASSPG--LIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQ---LGSAW 120 (341)
Q Consensus 56 ~~~~~W~~l~~~~--------~p--~~~~~~~~~~~g--lv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~---~~~~~ 120 (341)
+-.-+|.++++.. -| +.+++ .+...+ -||+.||- ++.....++++||-..++|...-- .+..|
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQ-MV~~~~~~CiYLYGGW-dG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQ-MVIDVQTECVYLYGGW-DGTQDLADFWAYSVKENQWTCINRDTEGPGAR 313 (723)
T ss_pred cccccccccCchhhcccccccCccccCcce-EEEeCCCcEEEEecCc-ccchhHHHHHhhcCCcceeEEeecCCCCCcch
Confidence 3345788776432 12 23555 444444 78888875 344456789999999999987532 23344
Q ss_pred ceeEEEEEcCCCcEEEEc--------------CeEEEEEcCCCccccccccCCCCC-CCcc--c------ccCc--eEEE
Q 041767 121 SKHGSVLVDSLNKVMVLT--------------ELAALFFSNSNHWLKFSSNLPSKP-RSPI--L------MLNS--VYAL 175 (341)
Q Consensus 121 ~~~~~~~~~~~~ki~~~g--------------~~~evYd~~t~~W~~~~~~~p~~~-r~~~--~------~~~~--~y~~ 175 (341)
..|-++...+..|+|.+| ...++||..++.|..+.. .... ..+. + ...+ +||+
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~--dt~~dGGP~~vfDHqM~Vd~~k~~iyVf 391 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSE--DTAADGGPKLVFDHQMCVDSEKHMIYVF 391 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecc--cccccCCcceeecceeeEecCcceEEEe
Confidence 334333322335888876 247899999999987753 2110 1111 1 1112 4555
Q ss_pred eecCCCcCCcceeeEeecccCCCCceeEEEcccccccccc
Q 041767 176 CDVGSPWRSQWKLFCCNLSSLTNSQQFWHCLERREWGDVF 215 (341)
Q Consensus 176 ~~~G~~~~~~~~~~~~~~~~~~~~~v~~yD~~~~~W~~~~ 215 (341)
||. ...+. ......+.+||.....|..+.
T Consensus 392 --GGr-------~~~~~--e~~f~GLYaf~~~~~~w~~l~ 420 (723)
T KOG2437|consen 392 --GGR-------ILTCN--EPQFSGLYAFNCQCQTWKLLR 420 (723)
T ss_pred --cCe-------eccCC--CccccceEEEecCCccHHHHH
Confidence 331 11111 122346889999999998764
No 55
>PLN02772 guanylate kinase
Probab=93.33 E-value=0.33 Score=44.66 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=49.8
Q ss_pred ccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEe---ccCCHHHHHhhcCCCceEEEecCCEEEEEEcc
Q 041767 221 PRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEA---GRMPVEMYRCFSESSKFKVFGMGDKVCFSAKR 297 (341)
Q Consensus 221 ~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~---~~mp~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 297 (341)
...+++ ++++||+||..+. ... +..||.||..+.+|+.- +..|.++. ....|+-.+++|++..++
T Consensus 28 ~tav~i-gdk~yv~GG~~d~---~~~--~~~v~i~D~~t~~W~~P~V~G~~P~~r~------GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 28 ETSVTI-GDKTYVIGGNHEG---NTL--SIGVQILDKITNNWVSPIVLGTGPKPCK------GYSAVVLNKDRILVIKKG 95 (398)
T ss_pred ceeEEE-CCEEEEEcccCCC---ccc--cceEEEEECCCCcEecccccCCCCCCCC------cceEEEECCceEEEEeCC
Confidence 445665 8999999997653 112 35789999999999973 45665532 234555667788776654
Q ss_pred c---CcEEEEEeee
Q 041767 298 V---GRLALWECEK 308 (341)
Q Consensus 298 ~---~~v~~yD~~~ 308 (341)
. +.++...+.+
T Consensus 96 ~~~~~~~w~l~~~t 109 (398)
T PLN02772 96 SAPDDSIWFLEVDT 109 (398)
T ss_pred CCCccceEEEEcCC
Confidence 2 4566666663
No 56
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=92.77 E-value=0.015 Score=34.55 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=17.1
Q ss_pred cccccccccccccCChhhHH
Q 041767 2 ICRSVCKLFNQILTSSSFIH 21 (341)
Q Consensus 2 r~r~VcK~W~~li~s~~F~~ 21 (341)
+++.|||+|+.++.++.|..
T Consensus 20 ~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 20 RLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred HHHHHHHHHHHHhcChhhhh
Confidence 57899999999999987653
No 57
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=92.19 E-value=0.044 Score=33.98 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=18.0
Q ss_pred cccccccccccccCChhhHHHH
Q 041767 2 ICRSVCKLFNQILTSSSFIHLI 23 (341)
Q Consensus 2 r~r~VcK~W~~li~s~~F~~~~ 23 (341)
+++.|||+|++++.++.+...+
T Consensus 25 ~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 25 RLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHHHhhHHHHHHcCCCccHHH
Confidence 6899999999999999876654
No 58
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=91.39 E-value=4.6 Score=34.30 Aligned_cols=110 Identities=13% Similarity=0.203 Sum_probs=62.7
Q ss_pred ceeEEEcccccccccccc----cCCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHHHHHh
Q 041767 200 QQFWHCLERREWGDVFDI----LKRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMYRC 275 (341)
Q Consensus 200 ~v~~yD~~~~~W~~~~~~----~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~~~ 275 (341)
.+.+|+.++++|+.+... .....-+ +.+|.||-+...... . .. ..|..||-.+++|.+...+|......
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v-~~~G~lyw~~~~~~~----~-~~-~~IvsFDl~~E~f~~~i~~P~~~~~~ 143 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPHHPLKSRGV-CINGVLYYLAYTLKT----N-PD-YFIVSFDVSSERFKEFIPLPCGNSDS 143 (230)
T ss_pred cEEEEEeCCCCccccccCCCCccccCCeE-EECCEEEEEEEECCC----C-Cc-EEEEEEEcccceEeeeeecCcccccc
Confidence 688999999999987521 1111233 348999988743221 1 11 24667888888999633455432110
Q ss_pred hcCCCceEEEecCCEEEEEEcc--cCcEEEEEeeeCCCCeeEEcCC
Q 041767 276 FSESSKFKVFGMGDKVCFSAKR--VGRLALWECEKGGGGEWRWIDG 319 (341)
Q Consensus 276 ~~~~~~~~~~~~~~~i~~~~~~--~~~v~~yD~~~~~~~~W~~~~~ 319 (341)
......+..++.+++.... ...+.++-+++.+.++|++.-.
T Consensus 144 ---~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~ 186 (230)
T TIGR01640 144 ---VDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFT 186 (230)
T ss_pred ---ccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEE
Confidence 1122334446778765432 2346666666433567988533
No 59
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=90.79 E-value=0.067 Score=33.04 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=16.4
Q ss_pred cccccccccccccCChhhHH
Q 041767 2 ICRSVCKLFNQILTSSSFIH 21 (341)
Q Consensus 2 r~r~VcK~W~~li~s~~F~~ 21 (341)
++..|||+|++++.++.+-+
T Consensus 23 ~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 23 RLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp HHTTSSHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHCChhhhh
Confidence 57899999999998885433
No 60
>PF13854 Kelch_5: Kelch motif
Probab=90.44 E-value=0.75 Score=27.52 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=21.8
Q ss_pred CccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCC
Q 041767 220 RPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLD 258 (341)
Q Consensus 220 ~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~ 258 (341)
.+.++.+ +++||+.||..... +...+ ++|.+|-.
T Consensus 7 ~hs~~~~-~~~iyi~GG~~~~~--~~~~~--d~~~l~l~ 40 (42)
T PF13854_consen 7 GHSAVVV-GNNIYIFGGYSGNN--NSYSN--DLYVLDLP 40 (42)
T ss_pred ceEEEEE-CCEEEEEcCccCCC--CCEEC--cEEEEECC
Confidence 4556664 89999999987310 12222 68888754
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=90.14 E-value=16 Score=33.97 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=40.4
Q ss_pred eccCCEEEEecCCCCCCCCCceEEEEcCcccc--eec-CCCCCCCC------ceeEEEEEcCCCcEEEEc--CeEEEEEc
Q 041767 78 ASSPGLIYLWGDLPDSPESNKSLIACNPLTRL--YRV-LPQLGSAW------SKHGSVLVDSLNKVMVLT--ELAALFFS 146 (341)
Q Consensus 78 ~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~--w~~-lp~~~~~~------~~~~~~~~~~~~ki~~~g--~~~evYd~ 146 (341)
+..+|.||+... ...++.+|+.|++ |+. ++.-.... ...+..++ .+++||+.+ +.+..+|.
T Consensus 66 vv~~~~vy~~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~ 137 (394)
T PRK11138 66 AVAYNKVYAADR-------AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNA 137 (394)
T ss_pred EEECCEEEEECC-------CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE-ECCEEEEEcCCCEEEEEEC
Confidence 456889998753 3578999998776 763 33210000 00111122 257888865 46888998
Q ss_pred CCC--cccc
Q 041767 147 NSN--HWLK 153 (341)
Q Consensus 147 ~t~--~W~~ 153 (341)
+++ .|+.
T Consensus 138 ~tG~~~W~~ 146 (394)
T PRK11138 138 EDGEVAWQT 146 (394)
T ss_pred CCCCCcccc
Confidence 765 5976
No 62
>PF13854 Kelch_5: Kelch motif
Probab=88.78 E-value=1 Score=26.92 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=25.6
Q ss_pred CCCCcceeeccCCEEEEecCCCC-CCCCCceEEEEcCcc
Q 041767 70 PFRSLHPVASSPGLIYLWGDLPD-SPESNKSLIACNPLT 107 (341)
Q Consensus 70 p~~~~~~~~~~~glv~~~g~~~~-~~~~~~~~~v~nP~t 107 (341)
|+..++ ++..++.||+.||... .....++++++|..|
T Consensus 4 ~R~~hs-~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 4 PRYGHS-AVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CccceE-EEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 455665 6667899999998742 233456789988765
No 63
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=86.95 E-value=17 Score=30.54 Aligned_cols=90 Identities=21% Similarity=0.203 Sum_probs=52.0
Q ss_pred ceEEEeeCCCCc--EEEeeCCCCCCCCcce--eeccCCEEEEecCCCCCCCCCceEEEEcCcccc--eecCCCCCCCCce
Q 041767 49 AALHVYDPNQNQ--WLRFDLSFLPFRSLHP--VASSPGLIYLWGDLPDSPESNKSLIACNPLTRL--YRVLPQLGSAWSK 122 (341)
Q Consensus 49 ~~~~~yd~~~~~--W~~l~~~~~p~~~~~~--~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~--w~~lp~~~~~~~~ 122 (341)
..+.++|+.+++ |+. .+. +...... ....+|.||+... ...++++|+.|++ |+.-.+-. ...
T Consensus 3 g~l~~~d~~tG~~~W~~-~~~--~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~~~~--~~~ 70 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSY-DLG--PGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDLPGP--ISG 70 (238)
T ss_dssp SEEEEEETTTTEEEEEE-ECS--SSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEECSSC--GGS
T ss_pred CEEEEEECCCCCEEEEE-ECC--CCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeecccc--ccc
Confidence 456888987664 665 221 1111211 3337888888743 5789999998887 54322111 001
Q ss_pred eEEEEEcCCCcEEEEc--CeEEEEEcCCC--cccc
Q 041767 123 HGSVLVDSLNKVMVLT--ELAALFFSNSN--HWLK 153 (341)
Q Consensus 123 ~~~~~~~~~~ki~~~g--~~~evYd~~t~--~W~~ 153 (341)
. ..+. +++||+.. +.+..+|.+++ .|+.
T Consensus 71 ~-~~~~--~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 71 A-PVVD--GGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp G-EEEE--TTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred e-eeec--ccccccccceeeeEecccCCcceeeee
Confidence 1 2222 56777764 57888997665 5983
No 64
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=84.45 E-value=34 Score=31.69 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=34.7
Q ss_pred cCCEEEEecCCCCCCCCCceEEEEcCcccc--eec-CC-CCCC-C--Cc---eeEEEEEcCCCcEEEEc--CeEEEEEcC
Q 041767 80 SPGLIYLWGDLPDSPESNKSLIACNPLTRL--YRV-LP-QLGS-A--WS---KHGSVLVDSLNKVMVLT--ELAALFFSN 147 (341)
Q Consensus 80 ~~glv~~~g~~~~~~~~~~~~~v~nP~t~~--w~~-lp-~~~~-~--~~---~~~~~~~~~~~ki~~~g--~~~evYd~~ 147 (341)
.+|.+++..+ ...++.+|+.+++ |+. +. |... . +. ...-++. ++.+|+.+ +.+..+|.+
T Consensus 204 ~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~--~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 204 AFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV--GGVVYALAYNGNLVALDLR 274 (394)
T ss_pred ECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE--CCEEEEEEcCCeEEEEECC
Confidence 3566665432 3567788888775 653 11 1100 0 00 0011122 56777764 568888888
Q ss_pred CCc--ccc
Q 041767 148 SNH--WLK 153 (341)
Q Consensus 148 t~~--W~~ 153 (341)
+++ |+.
T Consensus 275 tG~~~W~~ 282 (394)
T PRK11138 275 SGQIVWKR 282 (394)
T ss_pred CCCEEEee
Confidence 764 875
No 65
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.96 E-value=2.8 Score=36.44 Aligned_cols=63 Identities=22% Similarity=0.370 Sum_probs=46.7
Q ss_pred CceEEEeeCCCCcEEEeeCCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCC
Q 041767 48 AAALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQL 116 (341)
Q Consensus 48 ~~~~~~yd~~~~~W~~l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~ 116 (341)
...+..|||...+|.+.++|-..-+.....+=..|.|.+..-. .+.+..|||.|.+++.+|-.
T Consensus 253 ~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~------agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEAD------AGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred CceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccc------cCceeecCcccceEEEecCC
Confidence 4567899999999999997754323444445556888875432 67899999999999999854
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=83.15 E-value=28 Score=29.71 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=55.9
Q ss_pred CceEEEeeCCCCcEEEeeCCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCC--C-CCceeE
Q 041767 48 AAALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLG--S-AWSKHG 124 (341)
Q Consensus 48 ~~~~~~yd~~~~~W~~l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~--~-~~~~~~ 124 (341)
...+..+|+.++.-..+..+. | .+. .+..-+|.+++... ....++|+.++++..+.... . ......
T Consensus 21 ~~~i~~~~~~~~~~~~~~~~~-~-~G~-~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~N 89 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDLPG-P-NGM-AFDRPDGRLYVADS--------GGIAVVDPDTGKVTVLADLPDGGVPFNRPN 89 (246)
T ss_dssp TTEEEEEETTTTEEEEEESSS-E-EEE-EEECTTSEEEEEET--------TCEEEEETTTTEEEEEEEEETTCSCTEEEE
T ss_pred CCEEEEEECCCCeEEEEecCC-C-ceE-EEEccCCEEEEEEc--------CceEEEecCCCcEEEEeeccCCCcccCCCc
Confidence 356788999988776666553 2 111 13325688877753 34566699999998776552 1 222333
Q ss_pred EEEEcCCCcEEEEc-----------CeEEEEEcCCCccccc
Q 041767 125 SVLVDSLNKVMVLT-----------ELAALFFSNSNHWLKF 154 (341)
Q Consensus 125 ~~~~~~~~ki~~~g-----------~~~evYd~~t~~W~~~ 154 (341)
-+++++++++|+.. +.+.++++. ++.+.+
T Consensus 90 D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 90 DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred eEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 44556678888853 236667776 454443
No 67
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=80.26 E-value=35 Score=30.77 Aligned_cols=97 Identities=15% Similarity=0.218 Sum_probs=59.9
Q ss_pred CceeEEEccccccccccc-cc---CCccEEEEe-CC-EEEEEEeeccccccccccceEEEEEEeCCCCcEEEec---cCC
Q 041767 199 SQQFWHCLERREWGDVFD-IL---KRPRLVRGV-GN-RILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAG---RMP 269 (341)
Q Consensus 199 ~~v~~yD~~~~~W~~~~~-~~---~~~~lv~~~-~g-~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~---~mp 269 (341)
+.|..||++.+.-..... .. ..|+-+.++ ++ -.|++....+ +|.||.+++...+-+++. .||
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s---------tV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNS---------TVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCC---------EEEEEEEcCCCceEEEeeeeccCc
Confidence 468889998766544321 11 123333332 34 4566654433 589999998777777765 455
Q ss_pred HHHHHhhcC---CCceEEEecCCEEEEEEcccCcEEEEEeee
Q 041767 270 VEMYRCFSE---SSKFKVFGMGDKVCFSAKRVGRLALWECEK 308 (341)
Q Consensus 270 ~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~v~~yD~~~ 308 (341)
.. +.+ ...+.+...|..+|++.+..+.|.+|-+..
T Consensus 238 ~d----F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 238 ED----FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred cc----cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 33 322 224555666888999888778888888874
No 68
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.27 E-value=26 Score=30.95 Aligned_cols=106 Identities=11% Similarity=0.149 Sum_probs=60.1
Q ss_pred CceEEEeeCCCCcEEEeeCCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCC-CCCcee--E
Q 041767 48 AAALHVYDPNQNQWLRFDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLG-SAWSKH--G 124 (341)
Q Consensus 48 ~~~~~~yd~~~~~W~~l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~-~~~~~~--~ 124 (341)
+..+..||+...+|..+... +......+.-..+..|++.|...........+..||..+++|..++.-. ....-. +
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 45688999999999987643 2211112122235566666542111113567899999999999888722 111111 2
Q ss_pred EEEEc-CCCcEEEEcC------eEEEEEcCCCccccccc
Q 041767 125 SVLVD-SLNKVMVLTE------LAALFFSNSNHWLKFSS 156 (341)
Q Consensus 125 ~~~~~-~~~ki~~~g~------~~evYd~~t~~W~~~~~ 156 (341)
..+.. ..+++++.|. .+..|| -.+|..+..
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence 22221 2347777662 355554 458988763
No 69
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.25 E-value=54 Score=29.32 Aligned_cols=232 Identities=12% Similarity=0.055 Sum_probs=114.0
Q ss_pred CCCCcceeecc-CCEEEEecCCCCCCCCCceEEEEcCcccceec-CCCCCCCCceeEEEEEcCCCc-EEEEc-------C
Q 041767 70 PFRSLHPVASS-PGLIYLWGDLPDSPESNKSLIACNPLTRLYRV-LPQLGSAWSKHGSVLVDSLNK-VMVLT-------E 139 (341)
Q Consensus 70 p~~~~~~~~~~-~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~-lp~~~~~~~~~~~~~~~~~~k-i~~~g-------~ 139 (341)
|.+.+.++..- .+.+.+.+.. ...-++++|+.+++-.. +.+ +..|.+.+..+...+++ +|..- +
T Consensus 4 P~RgH~~a~~p~~~~avafaRR-----PG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G 77 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARR-----PGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTENDYETGRG 77 (305)
T ss_pred CccccceeeCCCCCeEEEEEeC-----CCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEeccccCCCcE
Confidence 44445422222 4566555543 24568999999998653 333 44677766555545564 45432 3
Q ss_pred eEEEEEcCCCccccccccCCCC---CCCcccc-cCceEEEeecCCCcCCc--ceeeEeecccCCCCceeEEEcccccccc
Q 041767 140 LAALFFSNSNHWLKFSSNLPSK---PRSPILM-LNSVYALCDVGSPWRSQ--WKLFCCNLSSLTNSQQFWHCLERREWGD 213 (341)
Q Consensus 140 ~~evYd~~t~~W~~~~~~~p~~---~r~~~~~-~~~~y~~~~~G~~~~~~--~~~~~~~~~~~~~~~v~~yD~~~~~W~~ 213 (341)
.+-|||.. +..+.+.+ ++.. ++.-.+. .+..-++.|||..-++. ...+. +... ..++...|..+++=.+
T Consensus 78 ~IgVyd~~-~~~~ri~E-~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLN-l~tM--~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 78 VIGVYDAA-RGYRRIGE-FPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLN-LDTM--QPSLVYLDARSGALLE 152 (305)
T ss_pred EEEEEECc-CCcEEEeE-ecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecC-hhhc--CCceEEEecCCCceee
Confidence 68899998 66666664 4421 1111122 33355667755321111 10000 0000 1145556677654211
Q ss_pred ---ccc---ccCCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHHHHHhhcCCC-ceEEEe
Q 041767 214 ---VFD---ILKRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMYRCFSESS-KFKVFG 286 (341)
Q Consensus 214 ---~~~---~~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~~~~~~~~-~~~~~~ 286 (341)
+++ .+....|..-.+| ..++|........+.. .-+ ...+.. .. -+...+|.+....+.++. .+.+..
T Consensus 153 q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~-PLv--a~~~~g-~~-~~~~~~p~~~~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 153 QVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAP-PLV--ALHRRG-GA-LRLLPAPEEQWRRLNGYIGSIAADR 226 (305)
T ss_pred eeecCccccccceeeEEecCCC-cEEEEEecCCCCCccC-CeE--EEEcCC-Cc-ceeccCChHHHHhhCCceEEEEEeC
Confidence 221 1111122221234 4445533221100111 112 233332 22 334566766555444332 344444
Q ss_pred cCCEEEEEEcccCcEEEEEeeeCCCCeeEEcCCCC
Q 041767 287 MGDKVCFSAKRVGRLALWECEKGGGGEWRWIDGLP 321 (341)
Q Consensus 287 ~~~~i~~~~~~~~~v~~yD~~~~~~~~W~~~~~~~ 321 (341)
.++.|.+++...+.+.++|.. +..|...-.++
T Consensus 227 ~g~~ia~tsPrGg~~~~~d~~---tg~~~~~~~l~ 258 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVAVWDAA---TGRLLGSVPLP 258 (305)
T ss_pred CCCEEEEECCCCCEEEEEECC---CCCEeeccccC
Confidence 567888888777889999999 88887766655
No 70
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=77.24 E-value=57 Score=29.64 Aligned_cols=161 Identities=12% Similarity=0.046 Sum_probs=75.9
Q ss_pred CCEEEEecCCCCCCCCCceEEEEcCcccc--eecCCCCCCCCce-eEEEEEcCCC-cEEEEc---CeEEEEEcC--CCcc
Q 041767 81 PGLIYLWGDLPDSPESNKSLIACNPLTRL--YRVLPQLGSAWSK-HGSVLVDSLN-KVMVLT---ELAALFFSN--SNHW 151 (341)
Q Consensus 81 ~glv~~~g~~~~~~~~~~~~~v~nP~t~~--w~~lp~~~~~~~~-~~~~~~~~~~-ki~~~g---~~~evYd~~--t~~W 151 (341)
+..|++..-. ...+.+|+..... .........+... +-.++.++++ .+|++. +.+.+|+.. ++.+
T Consensus 155 g~~v~v~dlG------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 155 GRFVYVPDLG------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp SSEEEEEETT------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCEEEEEecC------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 4567765432 5677777665544 4332211111100 1123344455 677775 456666655 6666
Q ss_pred ccccc--cCCCCCCCcccccCceEEEeecCCCcCCcceeeEeecccCCCCceeEEEcc--ccccccccc---ccCCccEE
Q 041767 152 LKFSS--NLPSKPRSPILMLNSVYALCDVGSPWRSQWKLFCCNLSSLTNSQQFWHCLE--RREWGDVFD---ILKRPRLV 224 (341)
Q Consensus 152 ~~~~~--~~p~~~r~~~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~~~~~v~~yD~~--~~~W~~~~~---~~~~~~lv 224 (341)
+.+.. .+|..... . ....-.++..+|. .+|... +..+.|.+|++. +++-+.+.. .-..|+-+
T Consensus 229 ~~~~~~~~~~~~~~~-~-~~~~~i~ispdg~-------~lyvsn--r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~ 297 (345)
T PF10282_consen 229 TEIQTISTLPEGFTG-E-NAPAEIAISPDGR-------FLYVSN--RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHF 297 (345)
T ss_dssp EEEEEEESCETTSCS-S-SSEEEEEE-TTSS-------EEEEEE--CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEE
T ss_pred eEEEEeeeccccccc-c-CCceeEEEecCCC-------EEEEEe--ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEE
Confidence 65543 23321100 0 0001122332232 344432 223568889883 344444431 12234444
Q ss_pred EE-eCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEec
Q 041767 225 RG-VGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAG 266 (341)
Q Consensus 225 ~~-~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~ 266 (341)
.. .+|+.++++...+ +.+.++++|+++..++.+.
T Consensus 298 ~~s~~g~~l~Va~~~s--------~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDS--------NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EE-TTSSEEEEEETTT--------TEEEEEEEETTTTEEEEEE
T ss_pred EEeCCCCEEEEEecCC--------CeEEEEEEeCCCCcEEEec
Confidence 42 2455555553332 3588999999888898876
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=75.75 E-value=65 Score=29.52 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=16.3
Q ss_pred CCcEEEEc--CeEEEEEcCCC--cccc
Q 041767 131 LNKVMVLT--ELAALFFSNSN--HWLK 153 (341)
Q Consensus 131 ~~ki~~~g--~~~evYd~~t~--~W~~ 153 (341)
+++||+.+ +.+..||..++ .|+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~ 91 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRV 91 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeee
Confidence 56777765 46888887765 4875
No 72
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=68.20 E-value=50 Score=25.03 Aligned_cols=65 Identities=6% Similarity=0.011 Sum_probs=39.8
Q ss_pred CceEEEeeCCCCcEEEeeCCC--CCCCCcceeeccCCEEEEecCCCCCCCCCceEEEE-cCcccceec
Q 041767 48 AAALHVYDPNQNQWLRFDLSF--LPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIAC-NPLTRLYRV 112 (341)
Q Consensus 48 ~~~~~~yd~~~~~W~~l~~~~--~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~-nP~t~~w~~ 112 (341)
...+.+||..+.+|+.++.|. ........+.-.+|.|++...........-++++. |-.+++|.+
T Consensus 19 ~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk 86 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSK 86 (129)
T ss_pred CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEE
Confidence 456889999999999999762 11122223667789888875431111112345555 566778864
No 73
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=66.97 E-value=95 Score=27.76 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=41.8
Q ss_pred eEEEEEEeCCCCcEEEeccCCHHHHHhhcCCCceEEEecCCEEEEEEcccCcEEEEEeeeCCCCeeEEcCCCC
Q 041767 249 TILILRLDLDLLEWEEAGRMPVEMYRCFSESSKFKVFGMGDKVCFSAKRVGRLALWECEKGGGGEWRWIDGLP 321 (341)
Q Consensus 249 ~~~vw~~d~~~~~W~~~~~mp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yD~~~~~~~~W~~~~~~~ 321 (341)
.+.||.++..+..++.+...+.... -..+.+...+..+|+.....+.+.+|++... +..+..+...+
T Consensus 251 ~I~v~~i~~~~~~~~~~~~~~~~~~-----p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~-~g~l~~~~~~~ 317 (330)
T PRK11028 251 LISVFSVSEDGSVLSFEGHQPTETQ-----PRGFNIDHSGKYLIAAGQKSHHISVYEIDGE-TGLLTELGRYA 317 (330)
T ss_pred eEEEEEEeCCCCeEEEeEEEecccc-----CCceEECCCCCEEEEEEccCCcEEEEEEcCC-CCcEEEccccc
Confidence 5788988876667777666553210 1124444556788887765678899987521 45677766554
No 74
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=63.62 E-value=1.1e+02 Score=27.33 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=30.9
Q ss_pred eEEEEEEeCCCCcEEEe---ccCCHHHHHhhcCCCceEEEecCCEEEEEEcccCcEEEEEeee
Q 041767 249 TILILRLDLDLLEWEEA---GRMPVEMYRCFSESSKFKVFGMGDKVCFSAKRVGRLALWECEK 308 (341)
Q Consensus 249 ~~~vw~~d~~~~~W~~~---~~mp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yD~~~ 308 (341)
.+.+|++++.+++.+.+ ..+|........ ...+...-.+..+|+.....+.+.+||+++
T Consensus 198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 198 SVDVWQLKDPHGEIECVQTLDMMPADFSDTRW-AADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc-ceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 47889998655555443 334422100000 001222234567787655557788999873
No 75
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=62.47 E-value=71 Score=29.84 Aligned_cols=124 Identities=15% Similarity=0.057 Sum_probs=64.3
Q ss_pred ceEEEEcCcccceecCCCCCCC-C---ceeEEEEEcCCCcEEEEcCeEEEEEcCCCccccccccCCCCCCCcccccC--c
Q 041767 98 KSLIACNPLTRLYRVLPQLGSA-W---SKHGSVLVDSLNKVMVLTELAALFFSNSNHWLKFSSNLPSKPRSPILMLN--S 171 (341)
Q Consensus 98 ~~~~v~nP~t~~w~~lp~~~~~-~---~~~~~~~~~~~~ki~~~g~~~evYd~~t~~W~~~~~~~p~~~r~~~~~~~--~ 171 (341)
-+.+|||..|++-.++..+... . ..+|.+. ++|- |...+...+||.....=+.-. ..+++ || -
T Consensus 253 ~RylVfN~~t~~V~R~Daig~acv~LPedqGiIF--pgGY-yLqtGe~K~Fd~~~~~l~F~r-----~vrSP---NGEDv 321 (448)
T PF12458_consen 253 WRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIF--PGGY-YLQTGEYKTFDTDMDGLEFER-----KVRSP---NGEDV 321 (448)
T ss_pred eeEEEEecccceEEEecchhhhhhcCCccCceEc--cCce-EeccCCceeecccCCCceEEE-----EecCC---CCceE
Confidence 4789999999999998887521 1 1223222 2222 223356778876655322211 11222 44 2
Q ss_pred eEEEeecCCCcCCcceeeEeecccCCCCceeEEEcccccccccccccCCccEEEEeCCEEEEEEeeccccccccccceEE
Q 041767 172 VYALCDVGSPWRSQWKLFCCNLSSLTNSQQFWHCLERREWGDVFDILKRPRLVRGVGNRILMIGGLKSSFTLNASCSTIL 251 (341)
Q Consensus 172 ~y~~~~~G~~~~~~~~~~~~~~~~~~~~~v~~yD~~~~~W~~~~~~~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~ 251 (341)
+|++..-. .....++.|++-+. ++...+.++...-+.+|+|.++-..+++ ....--|+
T Consensus 322 LYvF~~~~----------------~g~~~Ll~YN~I~k---~v~tPi~chG~alf~DG~l~~fra~~~E---ptrvHp~Q 379 (448)
T PF12458_consen 322 LYVFYARE----------------EGRYLLLPYNLIRK---EVATPIICHGYALFEDGRLVYFRAEGDE---PTRVHPMQ 379 (448)
T ss_pred EEEEEECC----------------CCcEEEEechhhhh---hhcCCeeccceeEecCCEEEEEecCCCC---cceeccce
Confidence 36654411 00124678998875 3433333444443458899888754221 11112477
Q ss_pred EEE
Q 041767 252 ILR 254 (341)
Q Consensus 252 vw~ 254 (341)
||+
T Consensus 380 iWq 382 (448)
T PF12458_consen 380 IWQ 382 (448)
T ss_pred eec
Confidence 885
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=60.15 E-value=1.5e+02 Score=27.78 Aligned_cols=113 Identities=11% Similarity=0.118 Sum_probs=59.9
Q ss_pred CCCcEEEEc---CeEEEEEcCCCccccccccCCCCCCCcccccCceEEEeecCCCcCCcceeeEeecccCCCCceeEEEc
Q 041767 130 SLNKVMVLT---ELAALFFSNSNHWLKFSSNLPSKPRSPILMLNSVYALCDVGSPWRSQWKLFCCNLSSLTNSQQFWHCL 206 (341)
Q Consensus 130 ~~~ki~~~g---~~~evYd~~t~~W~~~~~~~p~~~r~~~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~~~~~v~~yD~ 206 (341)
+++-|+..| +.+.+||.+... .++ .+|. ...++ ....|..+| |++...-.-+.|..+|+
T Consensus 357 pDgLifgtgt~d~~vkiwdlks~~--~~a-~Fpg-ht~~v----k~i~FsENG----------Y~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 357 PDGLIFGTGTPDGVVKIWDLKSQT--NVA-KFPG-HTGPV----KAISFSENG----------YWLATAADDGSVKLWDL 418 (506)
T ss_pred CCceEEeccCCCceEEEEEcCCcc--ccc-cCCC-CCCce----eEEEeccCc----------eEEEEEecCCeEEEEEe
Confidence 456677766 579999998877 445 3663 11111 112344434 22211111124889999
Q ss_pred cccc-cccccc-ccCCccEEEEe-CCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHH
Q 041767 207 ERRE-WGDVFD-ILKRPRLVRGV-GNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVE 271 (341)
Q Consensus 207 ~~~~-W~~~~~-~~~~~~lv~~~-~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~ 271 (341)
+..+ +..+.- .-....-+.++ -|...+++| ..+.||.++..+.+|+++..++..
T Consensus 419 RKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-----------~~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 419 RKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-----------SDLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred hhhcccceeeccccccceeEEEcCCCCeEEeec-----------ceeEEEEEecccccceeeehhhhc
Confidence 8643 333321 00011112221 245555553 236899999889999999877644
No 77
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=58.97 E-value=1.4e+02 Score=26.83 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=40.2
Q ss_pred CCCcEEEeeCC-CCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCCceeEEEEEcCCCcEE
Q 041767 57 NQNQWLRFDLS-FLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWSKHGSVLVDSLNKVM 135 (341)
Q Consensus 57 ~~~~W~~l~~~-~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~~~~~~ki~ 135 (341)
.-.+|.+++++ .+|...+.+.+..++.+.+.+. ...++.-.-.-++|+.+..-.... .. ......+++++
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~-------~G~iy~T~DgG~tW~~~~~~~~gs-~~-~~~r~~dG~~v 159 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAELAGD-------RGAIYRTTDGGKTWQAVVSETSGS-IN-DITRSSDGRYV 159 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEEEET-------T--EEEESSTTSSEEEEE-S-----EE-EEEE-TTS-EE
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcC-------CCcEEEeCCCCCCeeEcccCCcce-eE-eEEECCCCcEE
Confidence 34679988753 3454334334444455554442 345666666777888765322111 11 11222467888
Q ss_pred EEc---CeEEEEEcCCCccccccc
Q 041767 136 VLT---ELAALFFSNSNHWLKFSS 156 (341)
Q Consensus 136 ~~g---~~~evYd~~t~~W~~~~~ 156 (341)
+++ +.....|+....|+....
T Consensus 160 avs~~G~~~~s~~~G~~~w~~~~r 183 (302)
T PF14870_consen 160 AVSSRGNFYSSWDPGQTTWQPHNR 183 (302)
T ss_dssp EEETTSSEEEEE-TT-SS-EEEE-
T ss_pred EEECcccEEEEecCCCccceEEcc
Confidence 776 334556777788988663
No 78
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=57.17 E-value=38 Score=30.02 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=48.2
Q ss_pred CCEEEEEE-eeccccccccccceEEEEEEeCCCCcEEEeccCCHHHHHhhcCCCceEEEec-----CCEEEEEEcccCcE
Q 041767 228 GNRILMIG-GLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMYRCFSESSKFKVFGM-----GDKVCFSAKRVGRL 301 (341)
Q Consensus 228 ~g~l~vvg-g~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~v 301 (341)
.|+|.|+. |.-+..........-++..+|..+++=.+.-.+|.........-..+.+-.. +..+|+.......+
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~gl 90 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGL 90 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEE
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcE
Confidence 57888886 3321100000012346778888888866656666543321000011222221 14678887766789
Q ss_pred EEEEeeeCCCCeeEEcCC
Q 041767 302 ALWECEKGGGGEWRWIDG 319 (341)
Q Consensus 302 ~~yD~~~~~~~~W~~~~~ 319 (341)
+|||+.+ .++|+.+..
T Consensus 91 IV~dl~~--~~s~Rv~~~ 106 (287)
T PF03022_consen 91 IVYDLAT--GKSWRVLHN 106 (287)
T ss_dssp EEEETTT--TEEEEEETC
T ss_pred EEEEccC--CcEEEEecC
Confidence 9999994 578988776
No 79
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=56.91 E-value=1.6e+02 Score=26.95 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=46.0
Q ss_pred ceEEEeeCCCC--cEEEee-CCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccc--eec-CC-CCCC---
Q 041767 49 AALHVYDPNQN--QWLRFD-LSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRL--YRV-LP-QLGS--- 118 (341)
Q Consensus 49 ~~~~~yd~~~~--~W~~l~-~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~--w~~-lp-~~~~--- 118 (341)
..+.++|+.+. .|+.-. .+..........+..+|.+++... ...++.+|+.|++ |+. +. +...
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~-------~g~v~ald~~tG~~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFA-------GGKLVALDLQTGQPLWEQRVALPKGRTEL 227 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeeccccCCCCCch
Confidence 34667777654 365321 111100111112334566665432 3578889998775 643 11 1100
Q ss_pred CCc--eeEEEEEcCCCcEEEEc--CeEEEEEcCCCc--ccc
Q 041767 119 AWS--KHGSVLVDSLNKVMVLT--ELAALFFSNSNH--WLK 153 (341)
Q Consensus 119 ~~~--~~~~~~~~~~~ki~~~g--~~~evYd~~t~~--W~~ 153 (341)
.+. ..+.-+. .++.||+.. +.+..||.++++ |+.
T Consensus 228 ~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 228 ERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKR 267 (377)
T ss_pred hhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEee
Confidence 000 0011111 156777764 578889987654 755
No 80
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=54.20 E-value=67 Score=22.87 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=28.9
Q ss_pred eccCCEEEEecCCCCC-----------CCCCceEEEEcCcccceecCCC-CCCCCceeEEEEEcCCCcEEEE
Q 041767 78 ASSPGLIYLWGDLPDS-----------PESNKSLIACNPLTRLYRVLPQ-LGSAWSKHGSVLVDSLNKVMVL 137 (341)
Q Consensus 78 ~~~~glv~~~g~~~~~-----------~~~~~~~~v~nP~t~~w~~lp~-~~~~~~~~~~~~~~~~~ki~~~ 137 (341)
+..+|.||+....... .....+++.|||.|++.+.|-. +. +...+...+++.-+++
T Consensus 6 ~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~----fpNGVals~d~~~vlv 73 (89)
T PF03088_consen 6 DQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLY----FPNGVALSPDESFVLV 73 (89)
T ss_dssp -TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEES----SEEEEEE-TTSSEEEE
T ss_pred ecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCC----ccCeEEEcCCCCEEEE
Confidence 3345888887653210 1346789999999999987653 32 2334444455543333
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=52.41 E-value=2.1e+02 Score=27.11 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=28.6
Q ss_pred CceEEEEcCcccceec-CCCCCCCCceeEEEEEcCCCcEEEEc---CeEEEEEcCC
Q 041767 97 NKSLIACNPLTRLYRV-LPQLGSAWSKHGSVLVDSLNKVMVLT---ELAALFFSNS 148 (341)
Q Consensus 97 ~~~~~v~nP~t~~w~~-lp~~~~~~~~~~~~~~~~~~ki~~~g---~~~evYd~~t 148 (341)
...+.+|+..|.+-+. +..... .-.++.+- .+|+++++| +.+.+||-++
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~--~v~s~~fR-~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKD--VVYSVDFR-SDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhcc--ceeEEEee-cCCeEEEccCCcCcEEEecccc
Confidence 4577888887766443 222110 00112121 468999998 5799999555
No 82
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=52.19 E-value=73 Score=27.84 Aligned_cols=69 Identities=19% Similarity=0.120 Sum_probs=44.7
Q ss_pred eec-cCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCCCCceeE--EEEEcCCCcEEEEc---CeEEEEEcCCCc
Q 041767 77 VAS-SPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGSAWSKHG--SVLVDSLNKVMVLT---ELAALFFSNSNH 150 (341)
Q Consensus 77 ~~~-~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~~~~~~~--~~~~~~~~ki~~~g---~~~evYd~~t~~ 150 (341)
+.. .+|.+|-..|. .+.+.+..+|+.|++-..--+++. ..++ ..+. +++||.+. +.+.+||..+
T Consensus 50 L~~~~~g~LyESTG~----yG~S~l~~~d~~tg~~~~~~~l~~--~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t-- 119 (264)
T PF05096_consen 50 LEFLDDGTLYESTGL----YGQSSLRKVDLETGKVLQSVPLPP--RYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT-- 119 (264)
T ss_dssp EEEEETTEEEEEECS----TTEEEEEEEETTTSSEEEEEE-TT--T--EEEEEEE--TTEEEEEESSSSEEEEEETTT--
T ss_pred EEecCCCEEEEeCCC----CCcEEEEEEECCCCcEEEEEECCc--cccceeEEEE--CCEEEEEEecCCeEEEEcccc--
Confidence 444 57788876554 246789999999998665444432 2344 4444 78999986 5789999974
Q ss_pred ccccc
Q 041767 151 WLKFS 155 (341)
Q Consensus 151 W~~~~ 155 (341)
.+.+.
T Consensus 120 l~~~~ 124 (264)
T PF05096_consen 120 LKKIG 124 (264)
T ss_dssp TEEEE
T ss_pred ceEEE
Confidence 44444
No 83
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=49.39 E-value=32 Score=19.91 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=17.0
Q ss_pred eeccCCEEEEecCCCCCCCCCceEEEEcCcc
Q 041767 77 VASSPGLIYLWGDLPDSPESNKSLIACNPLT 107 (341)
Q Consensus 77 ~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t 107 (341)
.+..+|.||+.+. ...++++|+.|
T Consensus 17 ~~v~~g~vyv~~~-------dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTG-------DGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-T-------TSEEEEEETT-
T ss_pred CEEECCEEEEEcC-------CCEEEEEeCCC
Confidence 5667899998864 47899998865
No 84
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=47.63 E-value=2e+02 Score=25.44 Aligned_cols=123 Identities=15% Similarity=0.227 Sum_probs=62.8
Q ss_pred CCceeEEEcccccccccccccCC--ccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEecc-----CCH
Q 041767 198 NSQQFWHCLERREWGDVFDILKR--PRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGR-----MPV 270 (341)
Q Consensus 198 ~~~v~~yD~~~~~W~~~~~~~~~--~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~-----mp~ 270 (341)
+..+..||+...+|..+...+.- ..+.-..+++|++.|-.... +.....+. .||.++.+|+.+.. +|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~---~~~~~~la--~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLN---GTNSSNLA--TYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEEC---CCCceeEE--EEecCCCeeeecCCcccccCCC
Confidence 34688999999999987532210 11221236788888755432 11122344 45566788988765 232
Q ss_pred HHHHhhcCCCceEEEe-cCCEEEEEEcc-cCcEEEEEeeeCCCCeeEEcCCCCCCCCCCeeeEEeec
Q 041767 271 EMYRCFSESSKFKVFG-MGDKVCFSAKR-VGRLALWECEKGGGGEWRWIDGLPGIGDGPCRGFVYEA 335 (341)
Q Consensus 271 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~-~~~v~~yD~~~~~~~~W~~~~~~~~~~~~~~~~~~~~p 335 (341)
+.. .+.... ..+.+++.+.. .+...++-.+ ..+|+.+..-.....-.+.++.+-|
T Consensus 90 pv~-------a~~~~~~d~~~~~~aG~~~~g~~~l~~~d---Gs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 90 PVT-------ALTFISNDGSNFWVAGRSANGSTFLMKYD---GSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred cEE-------EEEeeccCCceEEEeceecCCCceEEEEc---CCceEeccccccCCCCEEEEEEEEe
Confidence 210 111111 24556665542 2233333345 7789988772111112455554433
No 85
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=44.94 E-value=57 Score=30.63 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=54.5
Q ss_pred ceeEEEcccccccccccc--cC--C-ccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHHHHH
Q 041767 200 QQFWHCLERREWGDVFDI--LK--R-PRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMYR 274 (341)
Q Consensus 200 ~v~~yD~~~~~W~~~~~~--~~--~-~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~~ 274 (341)
-+.+||+++.+-..+.+. +. . ..+-....+...++.|..+. | .-+-..++.|..-..|+-..
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~---------I--~lLhakT~eli~s~KieG~v-- 347 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH---------I--HLLHAKTKELITSFKIEGVV-- 347 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCce---------E--EeehhhhhhhhheeeeccEE--
Confidence 367899999888776521 11 1 11111134555555554332 2 22223344454333332111
Q ss_pred hhcCCCceEEEecCCEEEEEEcccCcEEEEEeeeCCCCeeEEcCCCCCCCCCCeeeEEeecccC
Q 041767 275 CFSESSKFKVFGMGDKVCFSAKRVGRLALWECEKGGGGEWRWIDGLPGIGDGPCRGFVYEASLN 338 (341)
Q Consensus 275 ~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yD~~~~~~~~W~~~~~~~~~~~~~~~~~~~~p~~~ 338 (341)
..+...-++..|++++. .+.|+++|++ .+ ..+.. ...+|.++|-++.+++.
T Consensus 348 -----~~~~fsSdsk~l~~~~~-~GeV~v~nl~---~~--~~~~r--f~D~G~v~gts~~~S~n 398 (514)
T KOG2055|consen 348 -----SDFTFSSDSKELLASGG-TGEVYVWNLR---QN--SCLHR--FVDDGSVHGTSLCISLN 398 (514)
T ss_pred -----eeEEEecCCcEEEEEcC-CceEEEEecC---Cc--ceEEE--EeecCccceeeeeecCC
Confidence 12333344555565544 4789999999 44 11111 11245666766666653
No 86
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=43.06 E-value=2.2e+02 Score=24.60 Aligned_cols=51 Identities=10% Similarity=0.031 Sum_probs=30.8
Q ss_pred CCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHHHHHhhcCCCceEEEecC--CEEEEEEc
Q 041767 228 GNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMYRCFSESSKFKVFGMG--DKVCFSAK 296 (341)
Q Consensus 228 ~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~~~~~~~~~~~~~~~~--~~i~~~~~ 296 (341)
.|.||+.....+ .|.++||.+++=-+.-.+|.+.. ...|+|+. +.+|+...
T Consensus 222 eG~L~Va~~ng~-----------~V~~~dp~tGK~L~eiklPt~qi-------tsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 222 EGNLYVATFNGG-----------TVQKVDPTTGKILLEIKLPTPQI-------TSCCFGGKNLDILYVTTA 274 (310)
T ss_pred CCcEEEEEecCc-----------EEEEECCCCCcEEEEEEcCCCce-------EEEEecCCCccEEEEEeh
Confidence 678998764322 47789998776555456775422 23456665 55676543
No 87
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=42.41 E-value=80 Score=29.70 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=39.5
Q ss_pred EEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHHHHHhhcCCCceEEEecCC-EEEEEEcccCcEEEEEeee
Q 041767 230 RILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMYRCFSESSKFKVFGMGD-KVCFSAKRVGRLALWECEK 308 (341)
Q Consensus 230 ~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~v~~yD~~~ 308 (341)
.|.+++|.+. ++.++.+|.+++. ++.+|-...+- .........|. .|+..++ ...+..||+.
T Consensus 226 plllvaG~d~---------~lrifqvDGk~N~--~lqS~~l~~fP----i~~a~f~p~G~~~i~~s~r-rky~ysyDle- 288 (514)
T KOG2055|consen 226 PLLLVAGLDG---------TLRIFQVDGKVNP--KLQSIHLEKFP----IQKAEFAPNGHSVIFTSGR-RKYLYSYDLE- 288 (514)
T ss_pred ceEEEecCCC---------cEEEEEecCccCh--hheeeeeccCc----cceeeecCCCceEEEeccc-ceEEEEeecc-
Confidence 5666676654 3689999887775 44444322110 11112222344 4555443 4678999999
Q ss_pred CCCCeeEEcCCC
Q 041767 309 GGGGEWRWIDGL 320 (341)
Q Consensus 309 ~~~~~W~~~~~~ 320 (341)
+.+-..+..+
T Consensus 289 --~ak~~k~~~~ 298 (514)
T KOG2055|consen 289 --TAKVTKLKPP 298 (514)
T ss_pred --ccccccccCC
Confidence 6655555443
No 88
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=41.79 E-value=1.6e+02 Score=25.70 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=41.9
Q ss_pred eCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHHHHHhhcCCCceEEEecCCEEEEEEcccCcEEEEEe
Q 041767 227 VGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMYRCFSESSKFKVFGMGDKVCFSAKRVGRLALWEC 306 (341)
Q Consensus 227 ~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yD~ 306 (341)
.+|.||...|..++ + .|-++|+++++=.+...+|...+.. . ++-.+|+||...-..+.+++||.
T Consensus 54 ~~g~LyESTG~yG~-------S--~l~~~d~~tg~~~~~~~l~~~~FgE-----G--it~~~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ-------S--SLRKVDLETGKVLQSVPLPPRYFGE-----G--ITILGDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp ETTEEEEEECSTTE-------E--EEEEEETTTSSEEEEEE-TTT--EE-----E--EEEETTEEEEEESSSSEEEEEET
T ss_pred CCCEEEEeCCCCCc-------E--EEEEEECCCCcEEEEEECCccccce-----e--EEEECCEEEEEEecCCeEEEEcc
Confidence 57899988776553 2 3446678777766667788665432 2 23346888876655577899998
Q ss_pred e
Q 041767 307 E 307 (341)
Q Consensus 307 ~ 307 (341)
.
T Consensus 118 ~ 118 (264)
T PF05096_consen 118 N 118 (264)
T ss_dssp T
T ss_pred c
Confidence 7
No 89
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=39.97 E-value=2.9e+02 Score=25.17 Aligned_cols=101 Identities=11% Similarity=0.128 Sum_probs=49.3
Q ss_pred CceEEEEcCcccceecCCCCCCCCceeEEEEEcCCC-cEEEEc------------CeEEEEEcCCC--ccccccccCCCC
Q 041767 97 NKSLIACNPLTRLYRVLPQLGSAWSKHGSVLVDSLN-KVMVLT------------ELAALFFSNSN--HWLKFSSNLPSK 161 (341)
Q Consensus 97 ~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~~~~~~-ki~~~g------------~~~evYd~~t~--~W~~~~~~~p~~ 161 (341)
..+++|+|..+++-. .-++ ....+.++..+++ .+|++. ..+++||.+|- .++. .+|.+
T Consensus 16 ~~rv~viD~d~~k~l--Gmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI---~iP~k 88 (342)
T PF06433_consen 16 TSRVYVIDADSGKLL--GMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI---EIPPK 88 (342)
T ss_dssp SEEEEEEETTTTEEE--EEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE---EETTS
T ss_pred cceEEEEECCCCcEE--EEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE---ecCCc
Confidence 357788887776532 2111 1122223333444 566653 25899999987 4543 36655
Q ss_pred CCCcccccCceEEEeecCCCcCCcceeeEeecccCCCCceeEEEccccccc
Q 041767 162 PRSPILMLNSVYALCDVGSPWRSQWKLFCCNLSSLTNSQQFWHCLERREWG 212 (341)
Q Consensus 162 ~r~~~~~~~~~y~~~~~G~~~~~~~~~~~~~~~~~~~~~v~~yD~~~~~W~ 212 (341)
+|..+........+..+|. .++. .+.-+..+|-+-|++.++.-
T Consensus 89 ~R~~~~~~~~~~~ls~dgk-------~~~V-~N~TPa~SVtVVDl~~~kvv 131 (342)
T PF06433_consen 89 PRAQVVPYKNMFALSADGK-------FLYV-QNFTPATSVTVVDLAAKKVV 131 (342)
T ss_dssp -B--BS--GGGEEE-TTSS-------EEEE-EEESSSEEEEEEETTTTEEE
T ss_pred chheecccccceEEccCCc-------EEEE-EccCCCCeEEEEECCCCcee
Confidence 4543322222334444342 1221 12222346889999998764
No 90
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=39.41 E-value=2.2e+02 Score=27.84 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=33.0
Q ss_pred ceEEEeeCCCCcEEE-eeCCCCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCccccee
Q 041767 49 AALHVYDPNQNQWLR-FDLSFLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYR 111 (341)
Q Consensus 49 ~~~~~yd~~~~~W~~-l~~~~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~ 111 (341)
..+..+|.+.++|.+ +... .+.-+...+..++|||++.+. .+.+..|||.+++-.
T Consensus 155 ~evYRlNLEqGrfL~P~~~~-~~~lN~v~in~~hgLla~Gt~-------~g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETD-SGELNVVSINEEHGLLACGTE-------DGVVEFWDPRDKSRV 210 (703)
T ss_pred cceEEEEccccccccccccc-cccceeeeecCccceEEeccc-------CceEEEecchhhhhh
Confidence 445556666666643 1111 111123337788999986642 578999999988753
No 91
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=39.21 E-value=80 Score=24.47 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=20.0
Q ss_pred ceeEEEccccc---ccccccccCCc---cEEEEeCCEEEEEEee
Q 041767 200 QQFWHCLERRE---WGDVFDILKRP---RLVRGVGNRILMIGGL 237 (341)
Q Consensus 200 ~v~~yD~~~~~---W~~~~~~~~~~---~lv~~~~g~l~vvgg~ 237 (341)
.+++||.+.++ ++++++..... ++-. ..+.|.++||.
T Consensus 74 ~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~-~~~~l~ivGGn 116 (136)
T PF14781_consen 74 SLLAYDVENNSDLFYKEVPDGVNAIVIGKLGD-IPSPLVIVGGN 116 (136)
T ss_pred eEEEEEcccCchhhhhhCccceeEEEEEecCC-CCCcEEEECce
Confidence 68999999775 34455332211 1111 13466677764
No 92
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=38.49 E-value=66 Score=17.26 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=17.3
Q ss_pred CCEEEEEEcccCcEEEEEeeeCCCCeeE
Q 041767 288 GDKVCFSAKRVGRLALWECEKGGGGEWR 315 (341)
Q Consensus 288 ~~~i~~~~~~~~~v~~yD~~~~~~~~W~ 315 (341)
++.+|+... .+.+.++|.+++ ...|+
T Consensus 6 ~~~v~~~~~-~g~l~a~d~~~G-~~~W~ 31 (33)
T smart00564 6 DGTVYVGST-DGTLYALDAKTG-EILWT 31 (33)
T ss_pred CCEEEEEcC-CCEEEEEEcccC-cEEEE
Confidence 456676543 377899999853 55665
No 93
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=36.91 E-value=2.2e+02 Score=23.59 Aligned_cols=101 Identities=16% Similarity=0.195 Sum_probs=52.5
Q ss_pred CceeEEEcccc--cccccc-cccCCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeC--CCCcEE-EeccCCHHH
Q 041767 199 SQQFWHCLERR--EWGDVF-DILKRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDL--DLLEWE-EAGRMPVEM 272 (341)
Q Consensus 199 ~~v~~yD~~~~--~W~~~~-~~~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~--~~~~W~-~~~~mp~~~ 272 (341)
+.+.++|..++ .|+.-. ....... +. .++++|+... + + .++.+|. .+..|+ ....-|...
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~v~v~~~--~-----~-----~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLPGPISGAP-VV-DGGRVYVGTS--D-----G-----SLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp SEEEEEETTTSEEEEEEECSSCGGSGE-EE-ETTEEEEEET--T-----S-----EEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred CEEEEEECCCCCEEEEeecccccccee-ee-cccccccccc--e-----e-----eeEecccCCcceeeeeccccccccc
Confidence 35788888655 465432 2222222 33 4788987762 1 1 3556664 344688 443322211
Q ss_pred HHhhcCCCceEEEecCCEEEEEEcccCcEEEEEeeeCCCCeeEEcCCC
Q 041767 273 YRCFSESSKFKVFGMGDKVCFSAKRVGRLALWECEKGGGGEWRWIDGL 320 (341)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yD~~~~~~~~W~~~~~~ 320 (341)
.. ........++.+++... .+.+.++|++++ ...|+.--..
T Consensus 112 ---~~--~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG-~~~w~~~~~~ 152 (238)
T PF13360_consen 112 ---VR--SSSSPAVDGDRLYVGTS-SGKLVALDPKTG-KLLWKYPVGE 152 (238)
T ss_dssp ---TB----SEEEEETTEEEEEET-CSEEEEEETTTT-EEEEEEESST
T ss_pred ---cc--cccCceEecCEEEEEec-cCcEEEEecCCC-cEEEEeecCC
Confidence 00 11122233677777654 367999999854 5577764344
No 94
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.72 E-value=1.3e+02 Score=26.98 Aligned_cols=38 Identities=11% Similarity=0.306 Sum_probs=26.0
Q ss_pred CEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCH
Q 041767 229 NRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPV 270 (341)
Q Consensus 229 g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~ 270 (341)
..++++|... . ......+.||++++..++|.+++++|.
T Consensus 184 ~p~iAvgs~e-~---a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 184 EPLIAVGSDE-D---APHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred CceEEEEccc-C---CccccceEEEEecCCcceeeeehhcCC
Confidence 3456666432 2 122345789999998889999998873
No 95
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=33.16 E-value=3.5e+02 Score=25.08 Aligned_cols=33 Identities=21% Similarity=0.107 Sum_probs=20.9
Q ss_pred ccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCC
Q 041767 79 SSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQ 115 (341)
Q Consensus 79 ~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~ 115 (341)
...|.|...+.. .....+...||.++.--..+|
T Consensus 93 ~~~~WLik~~~~----~~~~~~~Ll~PLsr~~~~~~~ 125 (373)
T PLN03215 93 PSKGWLIKSDMD----VNSGRFHLLNPLSRLPLRHSS 125 (373)
T ss_pred CCCCcEEEEecc----ccCCccEecCccccCccCCCC
Confidence 456777665432 124678999999998444443
No 96
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=31.09 E-value=4.8e+02 Score=25.03 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=52.9
Q ss_pred CceEEEeeCCCCcEEEeeC--CCC-----CC----CCc-ceeeccCC-EEEEecCCCCCCCCCceEEEEcCcccceecCC
Q 041767 48 AAALHVYDPNQNQWLRFDL--SFL-----PF----RSL-HPVASSPG-LIYLWGDLPDSPESNKSLIACNPLTRLYRVLP 114 (341)
Q Consensus 48 ~~~~~~yd~~~~~W~~l~~--~~~-----p~----~~~-~~~~~~~g-lv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp 114 (341)
....++|||++.+-..+.. |.. |. ..+ .-.+.++| ++-++. ....++.+|..+--..++
T Consensus 286 ~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS--------RGkaFi~~~~~~~~iqv~ 357 (668)
T COG4946 286 AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS--------RGKAFIMRPWDGYSIQVG 357 (668)
T ss_pred CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe--------cCcEEEECCCCCeeEEcC
Confidence 4568999999999888773 322 10 001 01344555 444443 356788888777666666
Q ss_pred CCCCCCceeEEEEEcCCCcEEEEc----CeEEEEEcCCCcccccc
Q 041767 115 QLGSAWSKHGSVLVDSLNKVMVLT----ELAALFFSNSNHWLKFS 155 (341)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~ki~~~g----~~~evYd~~t~~W~~~~ 155 (341)
.-...| .....++ .+-+++| ..+.+||-.+..=+.+.
T Consensus 358 ~~~~Vr--Y~r~~~~--~e~~vigt~dgD~l~iyd~~~~e~kr~e 398 (668)
T COG4946 358 KKGGVR--YRRIQVD--PEGDVIGTNDGDKLGIYDKDGGEVKRIE 398 (668)
T ss_pred CCCceE--EEEEccC--CcceEEeccCCceEEEEecCCceEEEee
Confidence 543222 1111222 1222332 36788888887766554
No 97
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.93 E-value=2.9e+02 Score=23.34 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=42.4
Q ss_pred eeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCC----CCCCC------CceeE--EEEEcCCCcEEE-Ec-CeEE
Q 041767 77 VASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLP----QLGSA------WSKHG--SVLVDSLNKVMV-LT-ELAA 142 (341)
Q Consensus 77 ~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp----~~~~~------~~~~~--~~~~~~~~ki~~-~g-~~~e 142 (341)
+.+.+..+.++.. ...+++||..+++-..-+ |+-.. ..... .+.++.+|..++ +. +...
T Consensus 18 l~~~~~~Ll~iT~-------~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y 90 (219)
T PF07569_consen 18 LECNGSYLLAITS-------SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSY 90 (219)
T ss_pred EEeCCCEEEEEeC-------CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence 5555665555432 468999998887764333 22111 11111 222334564443 33 5789
Q ss_pred EEEcCCCccccccc
Q 041767 143 LFFSNSNHWLKFSS 156 (341)
Q Consensus 143 vYd~~t~~W~~~~~ 156 (341)
.||..-..|..+.+
T Consensus 91 ~y~~~L~~W~~vsd 104 (219)
T PF07569_consen 91 SYSPDLGCWIRVSD 104 (219)
T ss_pred EeccccceeEEecc
Confidence 99999999999875
No 98
>PRK13684 Ycf48-like protein; Provisional
Probab=30.85 E-value=4.1e+02 Score=24.06 Aligned_cols=56 Identities=5% Similarity=0.077 Sum_probs=29.3
Q ss_pred ceEEEEcCcccceecCCCCCCCCceeEEEEEcCCCcEEEEcCeEEEE---EcCCCcccccc
Q 041767 98 KSLIACNPLTRLYRVLPQLGSAWSKHGSVLVDSLNKVMVLTELAALF---FSNSNHWLKFS 155 (341)
Q Consensus 98 ~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~~~~~~ki~~~g~~~evY---d~~t~~W~~~~ 155 (341)
..++.-+---++|..+...... ..+.+ ...+++.+++++..-.+| |....+|+.+.
T Consensus 152 G~i~~S~DgG~tW~~~~~~~~g-~~~~i-~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~ 210 (334)
T PRK13684 152 GAIYRTTDGGKNWEALVEDAAG-VVRNL-RRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQ 210 (334)
T ss_pred ceEEEECCCCCCceeCcCCCcc-eEEEE-EECCCCeEEEEeCCceEEEEcCCCCCeEEEee
Confidence 4566666667788877543211 11222 223455666666433333 34446798875
No 99
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=29.86 E-value=1.4e+02 Score=26.90 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=37.8
Q ss_pred ceeEEEcc-ccccccc---c-cccCCccEEEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEE-eccCCH
Q 041767 200 QQFWHCLE-RREWGDV---F-DILKRPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEE-AGRMPV 270 (341)
Q Consensus 200 ~v~~yD~~-~~~W~~~---~-~~~~~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~-~~~mp~ 270 (341)
.++.|... ...|.-- + ..+..|.+++..+|+|.++..+... .-+||+=.+-..+|++ +++++.
T Consensus 150 SlIiYS~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g--------~rrVYeS~DmG~tWtea~gtlsr 218 (310)
T PF13859_consen 150 SLIIYSTDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDG--------RRRVYESGDMGTTWTEALGTLSR 218 (310)
T ss_dssp EEEEEESSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS-----------EEEESSTTSS-EE-TTTTTT
T ss_pred EEEEEECCCccceEeccccCCCCcceEEEEeccCCeeEEEEecccc--------eEEEEEEcccceehhhccCccce
Confidence 46778777 5678642 1 3455688999767899999866442 1257765556788999 467774
No 100
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=29.16 E-value=4.8e+02 Score=24.41 Aligned_cols=91 Identities=15% Similarity=0.217 Sum_probs=44.8
Q ss_pred CCcEEEeeCC-CCCCCCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecC--CC----CCCC--------Cce
Q 041767 58 QNQWLRFDLS-FLPFRSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVL--PQ----LGSA--------WSK 122 (341)
Q Consensus 58 ~~~W~~l~~~-~~p~~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~l--p~----~~~~--------~~~ 122 (341)
-++|..++.+ ..|.....+.+..++.+++.+. ...+++-+-.-++|+.+ ++ +... ...
T Consensus 165 G~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~-------~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y 237 (398)
T PLN00033 165 GETWERIPLSPKLPGEPVLIKATGPKSAEMVTD-------EGAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYY 237 (398)
T ss_pred CCCceECccccCCCCCceEEEEECCCceEEEec-------cceEEEECCCCCCceEccccccccccccccccccccccee
Confidence 3578887643 2333222223333344555542 34577777777789876 22 1100 011
Q ss_pred eE---EEEEcCCCcEEEEcCeEEEEEcCC---Ccccccc
Q 041767 123 HG---SVLVDSLNKVMVLTELAALFFSNS---NHWLKFS 155 (341)
Q Consensus 123 ~~---~~~~~~~~ki~~~g~~~evYd~~t---~~W~~~~ 155 (341)
.+ .+....+++++++|..-.+|-+.. ..|+.+.
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~ 276 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN 276 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEec
Confidence 11 112234568888874434554433 3498876
No 101
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=29.07 E-value=2.5e+02 Score=30.12 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=44.1
Q ss_pred eeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCCC-----------CCceeEEEEEcCCCcEEEEc---CeEE
Q 041767 77 VASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLGS-----------AWSKHGSVLVDSLNKVMVLT---ELAA 142 (341)
Q Consensus 77 ~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~~-----------~~~~~~~~~~~~~~ki~~~g---~~~e 142 (341)
....+|.||+.... .+.+.++|+.|+....+..... ....+..+.++.++++|+.. +.+.
T Consensus 810 avd~dG~LYVADs~------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 810 LCAKDGQIYVADSY------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred eEeCCCcEEEEECC------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 33456778877643 5789999999988776543221 01122344455667898874 5789
Q ss_pred EEEcCCCc
Q 041767 143 LFFSNSNH 150 (341)
Q Consensus 143 vYd~~t~~ 150 (341)
++|..++.
T Consensus 884 vid~~~~~ 891 (1057)
T PLN02919 884 YLDLNKGE 891 (1057)
T ss_pred EEECCCCc
Confidence 99988765
No 102
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=28.07 E-value=13 Score=33.49 Aligned_cols=18 Identities=28% Similarity=0.746 Sum_probs=15.5
Q ss_pred cccccccccccccCChhh
Q 041767 2 ICRSVCKLFNQILTSSSF 19 (341)
Q Consensus 2 r~r~VcK~W~~li~s~~F 19 (341)
.|..|||+|+++++.+..
T Consensus 101 ~celv~k~W~r~l~dg~~ 118 (499)
T KOG0281|consen 101 ACELVCKEWKRVLSDGML 118 (499)
T ss_pred HHHHHHHHHHHHhccchH
Confidence 367899999999999864
No 103
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.05 E-value=2e+02 Score=29.90 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=29.0
Q ss_pred eEEEEEEeCCCCcEEEeccCCHHHHHhhcCC-CceEEEecCCEEEEEEcccCcEEEEEeee
Q 041767 249 TILILRLDLDLLEWEEAGRMPVEMYRCFSES-SKFKVFGMGDKVCFSAKRVGRLALWECEK 308 (341)
Q Consensus 249 ~~~vw~~d~~~~~W~~~~~mp~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~v~~yD~~~ 308 (341)
.+++|+|++ +..|+.=. + +...++ ..+.+-++.+.|. +....+.+-+||+.+
T Consensus 229 qVKlWrmne-tKaWEvDt-c-----rgH~nnVssvlfhp~q~lIl-SnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 229 QVKLWRMNE-TKAWEVDT-C-----RGHYNNVSSVLFHPHQDLIL-SNSEDKSIRVWDMTK 281 (1202)
T ss_pred eeeEEEecc-ccceeehh-h-----hcccCCcceEEecCccceeE-ecCCCccEEEEeccc
Confidence 489999974 77898722 1 211211 1222223345443 444447788999984
No 104
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=25.77 E-value=1.3e+02 Score=17.01 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=15.5
Q ss_pred CCEEEEEEcccCcEEEEEee
Q 041767 288 GDKVCFSAKRVGRLALWECE 307 (341)
Q Consensus 288 ~~~i~~~~~~~~~v~~yD~~ 307 (341)
++.+|+.....+.+.++|+.
T Consensus 3 ~~~lyv~~~~~~~v~~id~~ 22 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTA 22 (42)
T ss_pred CCEEEEEeCCCCEEEEEECC
Confidence 46788877666888899987
No 105
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=25.20 E-value=4e+02 Score=22.09 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=44.8
Q ss_pred CCceEEEeeCCCCcEEEeeCCCCCC---CCcceeeccCCEEEEecCCCCCCCCCceEEEEcCcccceecCCCCC
Q 041767 47 SAAALHVYDPNQNQWLRFDLSFLPF---RSLHPVASSPGLIYLWGDLPDSPESNKSLIACNPLTRLYRVLPQLG 117 (341)
Q Consensus 47 ~~~~~~~yd~~~~~W~~l~~~~~p~---~~~~~~~~~~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~~lp~~~ 117 (341)
.-..+.++|...+.|.++.+...+. +-+..-.-...|+.+.|.........+.+++||..|++=..|-+..
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~ 159 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWK 159 (200)
T ss_pred cceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeecc
Confidence 3466889999999988776432221 1121123344566666643222344678999999999988887663
No 106
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=24.84 E-value=2.4e+02 Score=27.17 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=18.2
Q ss_pred CccEEEEeCCEEEEEEeeccccccccccceEEEEEEeC
Q 041767 220 RPRLVRGVGNRILMIGGLKSSFTLNASCSTILILRLDL 257 (341)
Q Consensus 220 ~~~lv~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~ 257 (341)
...|.. +|+-+++||... ++.||++-.
T Consensus 470 SckL~p--dgrtLivGGeas---------tlsiWDLAa 496 (705)
T KOG0639|consen 470 SCKLLP--DGRTLIVGGEAS---------TLSIWDLAA 496 (705)
T ss_pred eeEecC--CCceEEeccccc---------eeeeeeccC
Confidence 344443 788889998743 478998753
No 107
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=24.74 E-value=3.2e+02 Score=24.35 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=33.0
Q ss_pred CceEEEEcCcccceecCCCCCCCCceeEEEEEcCCCcEEEEc---CeEEEEEcCCC
Q 041767 97 NKSLIACNPLTRLYRVLPQLGSAWSKHGSVLVDSLNKVMVLT---ELAALFFSNSN 149 (341)
Q Consensus 97 ~~~~~v~nP~t~~w~~lp~~~~~~~~~~~~~~~~~~ki~~~g---~~~evYd~~t~ 149 (341)
...+.|||..|..-...-||+..+.. .+...+.+..++-| +.+-+|+..+.
T Consensus 76 DGklIvWDs~TtnK~haipl~s~WVM--tCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPSSWVM--TCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred CCeEEEEEcccccceeEEecCceeEE--EEEECCCCCeEEecCcCceeEEEecccc
Confidence 45677788776665555566655544 23334567766665 57999998755
No 108
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=24.57 E-value=1.2e+02 Score=17.18 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=18.0
Q ss_pred CEEEEEEcccCcEEEEEeeeCCCCeeEEcC
Q 041767 289 DKVCFSAKRVGRLALWECEKGGGGEWRWID 318 (341)
Q Consensus 289 ~~i~~~~~~~~~v~~yD~~~~~~~~W~~~~ 318 (341)
+.||+. ...+.+..+|..++ ...|+.-.
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG-~~~W~~~~ 28 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTG-KVLWKFQT 28 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTT-SEEEEEES
T ss_pred CEEEEe-CCCCEEEEEECCCC-CEEEeeeC
Confidence 345655 33467888998854 66777643
No 109
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.45 E-value=2.6e+02 Score=23.69 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=38.8
Q ss_pred EEEeCCEEEEEEeeccccccccccceEEEEEEeCCCCcEEEeccCCHHHHHhhcCCCceEEEecCCEEEEEEcccCcEEE
Q 041767 224 VRGVGNRILMIGGLKSSFTLNASCSTILILRLDLDLLEWEEAGRMPVEMYRCFSESSKFKVFGMGDKVCFSAKRVGRLAL 303 (341)
Q Consensus 224 v~~~~g~l~vvgg~~~~~~~~~~~~~~~vw~~d~~~~~W~~~~~mp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 303 (341)
.++.+|+|+...|..+. +.+.+|.++-....|++--. |...+. +.+ +-.+|.+|...-..+..+.
T Consensus 51 L~~~~g~i~esTG~yg~-------S~ir~~~L~~gq~~~s~~l~-~~~~Fg-----EGi--t~~gd~~y~LTw~egvaf~ 115 (262)
T COG3823 51 LEYLDGHILESTGLYGF-------SKIRVSDLTTGQEIFSEKLA-PDTVFG-----EGI--TKLGDYFYQLTWKEGVAFK 115 (262)
T ss_pred eeeeCCEEEEecccccc-------ceeEEEeccCceEEEEeecC-Cccccc-----cce--eeccceEEEEEeccceeEE
Confidence 34468888887776442 34677877654556766332 323222 111 2335777765433355677
Q ss_pred EEeee
Q 041767 304 WECEK 308 (341)
Q Consensus 304 yD~~~ 308 (341)
||..+
T Consensus 116 ~d~~t 120 (262)
T COG3823 116 YDADT 120 (262)
T ss_pred EChHH
Confidence 77763
No 110
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=21.61 E-value=1.9e+02 Score=26.39 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=32.6
Q ss_pred CCceEEEeeCCCCc-EEEeeCCCCCCCCcceeecc-CCEEEEecCCCCCCCCCceEEEEcCccccee
Q 041767 47 SAAALHVYDPNQNQ-WLRFDLSFLPFRSLHPVASS-PGLIYLWGDLPDSPESNKSLIACNPLTRLYR 111 (341)
Q Consensus 47 ~~~~~~~yd~~~~~-W~~l~~~~~p~~~~~~~~~~-~glv~~~g~~~~~~~~~~~~~v~nP~t~~w~ 111 (341)
....+++||+.+++ -.++++.. +-.+.. ++.. .-+||..... ...+++||+.|++-.
T Consensus 267 pgteVWv~D~~t~krv~Ri~l~~-~~~Si~-Vsqd~~P~L~~~~~~------~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPLEH-PIDSIA-VSQDDKPLLYALSAG------DGTLDVYDAATGKLV 325 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEEEE-EESEEE-EESSSS-EEEEEETT------TTEEEEEETTT--EE
T ss_pred CceEEEEEECCCCeEEEEEeCCC-ccceEE-EccCCCcEEEEEcCC------CCeEEEEeCcCCcEE
Confidence 45779999999875 34555421 111122 2222 2377766543 578999999998754
No 111
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=20.73 E-value=6.2e+02 Score=22.71 Aligned_cols=27 Identities=7% Similarity=0.335 Sum_probs=17.4
Q ss_pred ceEEEec-CCEEEEEEcccCcEEEEEeee
Q 041767 281 KFKVFGM-GDKVCFSAKRVGRLALWECEK 308 (341)
Q Consensus 281 ~~~~~~~-~~~i~~~~~~~~~v~~yD~~~ 308 (341)
++++.-. ++.|.+ +.....+++||+.+
T Consensus 137 kVy~~~v~g~~LvV-g~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 137 KVYCMDVSGNRLVV-GTSDRKVLIYDLRN 164 (323)
T ss_pred eEEEEeccCCEEEE-eecCceEEEEEccc
Confidence 5666654 454444 33347799999995
Done!