BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041769
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
T+D + + + I + +E VK E + ++G A LYGPPGTGK+ L A+ ++
Sbjct: 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 12 KQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
KQ I + +E + + + Y +G LYGPPGTGK+ L+ A+ N
Sbjct: 181 KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTT-----FKENMELRNMLIATKNKSIL 92
HS L+GPPGTGK++L + Y N DV + T +E +E ++IL
Sbjct: 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTIL 110
Query: 93 VVGDI 97
V ++
Sbjct: 111 FVDEV 115
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61
F +A + K+ +++ ++ F+K E Y N+G L GPPGTGK+ L A+
Sbjct: 10 FKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68
Query: 62 NFDVYDLELTTFKE------NMELRNMLIATKNK--SILVVGDIDYL 100
+ + + ++F E +R++ K + SI+ + +ID +
Sbjct: 69 HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAI 115
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN 62
D ++ M Q I + +E +K E + VG LYGPPGTGK+ L A+ N
Sbjct: 18 DIGGLEKQM-QEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN 76
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMT 58
TFD + + + + + +E +K E ++ VG LYGPPGTGK+ L A+
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 41 FLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTT--FKENMELRNML--IATKNK-SIL 92
LYGPPGTGKS L A+ N F V +L + E+ +L L +A +NK SI+
Sbjct: 64 LLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSII 123
Query: 93 VVGDIDYLT 101
+ ++D LT
Sbjct: 124 FIDEVDALT 132
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 19 LERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAM-----------TNYLNFDVYD 67
+E F +F A + +LYG G GKS L+AAM T L+F +
Sbjct: 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193
Query: 68 LELTTFKENMELRNMLIATKNKSILVVGDI 97
+++ N ++ + A KN +L++ DI
Sbjct: 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDI 223
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 41 FLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTT--FKENMELRNML--IATKNK-SIL 92
LYGPPGTGKS L A+ N F V +L + E+ +L L +A +NK SI+
Sbjct: 55 LLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSII 114
Query: 93 VVGDIDYLT 101
+ +D LT
Sbjct: 115 FIDQVDALT 123
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 41 FLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTT--FKENMELRNML--IATKNK-SIL 92
LYGPPGTGKS L A+ N F V +L + E+ +L L +A +NK SI+
Sbjct: 88 LLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSII 147
Query: 93 VVGDIDYLT 101
+ +D LT
Sbjct: 148 FIDQVDALT 156
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 41 FLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTT--FKENMELRNML--IATKNK-SIL 92
LYGPPGTGKS L A+ N F V +L + E+ +L L +A +NK SI+
Sbjct: 73 LLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSII 132
Query: 93 VVGDIDYLT 101
+ +D LT
Sbjct: 133 FIDQVDALT 141
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 23 VKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLI---AAMTN 59
+KR + ++++G +YGPPGTGK+ L AA TN
Sbjct: 201 MKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN 240
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 22 FVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE------ 75
F+K + +G L GPPGTGK+ L A+ N + + + F E
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVG 93
Query: 76 NMELRNMLIATKNKS--ILVVGDIDYLTLH 103
+R++ K + I+ + +ID + H
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDEIDAVGRH 123
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 27 EFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVY 66
E ++ V + + GP G+GKS+ +AAM +YLN Y
Sbjct: 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKY 152
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSL---IAAMT 58
FD +A KQ + + + R E + + +A L+GPPG GK+ L +AA +
Sbjct: 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAAES 172
Query: 59 NYLNFDVYDLELTT--FKENMELRNMLIATKNK---SILVVGDIDYL 100
N F++ LT+ E +L L A + SI+ + +D L
Sbjct: 173 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSL 219
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
D ++S + Q I + +E + E Y +G LYG PGTGK+ L A+ N
Sbjct: 183 DIGGLESQI-QEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 9 SNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
+ +K+M+ E ++ ++ +G LYGPPGTGK+ + A+ N
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 9 SNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
+ +K+M+ E ++ ++ +G LYGPPGTGK+ + A+ N
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 9 SNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
+ +K+M+ E ++ ++ +G LYGPPGTGK+ + A+ N
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 9 SNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
+ +K+M+ E ++ ++ +G LYGPPGTGK+ + A+ N
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 9 SNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
+ +K+M+ E ++ ++ +G LYGPPGTGK+ + A+ N
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
T++ + ++K+ + + ++ V+ + + G YGPPG GK+ L A+ N
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 9 SNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
+ +K+M+ E ++ ++ +G LYGPPGTGK+ + A+ N
Sbjct: 214 AQIKEMV----ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
T++ + ++K+ + + ++ V+ + + G YGPPG GK+ L A+ N
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
Length = 173
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 35 AWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67
A K + FL GP G GKS++ + LN + YD
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 36 WKHSYFLYGPPGTGKSSLIAAMTNYLNFDVY------DLELTTFKENMEL-RNML-IATK 87
W+ L+GPPGTGKS L A+ N + DL E+ +L +N+ +A +
Sbjct: 167 WR-GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE 225
Query: 88 NK-SILVVGDIDYL 100
NK SI+ + +ID L
Sbjct: 226 NKPSIIFIDEIDSL 239
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 36 WKHSYFLYGPPGTGKSSLIAAMTNYLNFDVY------DLELTTFKENMEL-RNML-IATK 87
W+ L+GPPGTGKS L A+ N + DL E+ +L +N+ +A +
Sbjct: 45 WR-GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE 103
Query: 88 NK-SILVVGDIDYL 100
NK SI+ + +ID L
Sbjct: 104 NKPSIIFIDEIDSL 117
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 41 FLYGPPGTGKSSLIAAMTNYL 61
YGPPGTGK+S I A+T L
Sbjct: 62 LFYGPPGTGKTSTILALTKEL 82
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 22 FVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE------ 75
F+K + +G L GPPGTG + L A+ N + + + F E
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVG 93
Query: 76 NMELRNMLIATKNKS--ILVVGDIDYLTLH 103
+R++ K + I+ + +ID + H
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDEIDAVGRH 123
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
TF +A K+ + + +E +++ ++ +G + GPPGTGK+ L A+
Sbjct: 10 TFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 61 LNFDVYDLELTTFKE 75
+ + + F E
Sbjct: 69 AKVPFFTISGSDFVE 83
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 41 FLYGPPGTGKSSLIAAMT 58
YGPPGTGK+S I A+
Sbjct: 50 LFYGPPGTGKTSTIVALA 67
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 42 LYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRN 81
L GPPG GK+SL ++ L + L ++ E+R
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 44 GPPGTGKSSLIAAMTNYLN 62
GP G+GKS+ IA+M +Y+N
Sbjct: 143 GPTGSGKSTTIASMIDYIN 161
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 20 ERFVKRKEFYRNVGKAWKHSY---FLYGPPGTGKSSLIAAMTNYLNFDV 65
ER ++ Y KA K L+GPPG GK++L + + L ++
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 23 VKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNM 82
V+ + ++ +G L GPPG GK+ L A+ N + + + EL NM
Sbjct: 30 VRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISV------KGPELLNM 83
Query: 83 LIATKNKSI 91
+ +++
Sbjct: 84 YVGESERAV 92
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 20 ERFVKRKEFYRNVGKAWKHSY---FLYGPPGTGKSSLIAAMTNYLNFDV 65
ER ++ Y KA K L+GPPG GK++L + + L ++
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 20 ERFVKRKEFYRNVGKAWKHSY---FLYGPPGTGKSSLIAAMTNYLNFDV 65
ER ++ Y KA K L+GPPG GK++L + + L ++
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 8 DSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67
D + + D+LE ++ K+ + ++ L G PG+GK+SL +A+ +V
Sbjct: 9 DKQFENRLNDNLEELIQGKKAVES-----PTAFLLGGQPGSGKTSLRSAIFEETQGNVIV 63
Query: 68 LELTTFKE 75
++ TFK+
Sbjct: 64 IDNDTFKQ 71
>pdb|1ODO|A Chain A, 1.85 A Structure Of Cyp154a1 From Streptomyces Coelicolor
A3(2)
Length = 408
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
Query: 138 HPLLTEIDEL--IEKANVTLADVVEQLMRNK--VPEIALR-GLTDV 178
H LLT D+L + K VT ADVVE+ +R++ V + LR +TD+
Sbjct: 256 HTLLTRPDQLALVRKGEVTWADVVEETLRHEPAVKHLPLRYAVTDI 301
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 71/176 (40%), Gaps = 37/176 (21%)
Query: 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKNKSIL 92
G+ H L GPPG GK++L + + L +++ + ++ +L + + +L
Sbjct: 48 GEVLDH-VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL 106
Query: 93 VVGDIDYLTLHI--LLRSSCMDMHIHMSY------------CTPFRFKMLASNYFGITEH 138
+ +I L + LL S+ D I + PF + A+ G+
Sbjct: 107 FIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL-VGATTRSGLLSS 165
Query: 139 PL--------------LTEIDELIEKA----NVTLADVVEQLMRNK---VPEIALR 173
PL + E+ E+I++A +V + D +++ + P IA+R
Sbjct: 166 PLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIR 221
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
T++ + ++K+ + + ++ V+ + + G YGPPG GK+ L A+ N
Sbjct: 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 27 EFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
E + +G LYGPPGTGK+ A+ N
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 71/176 (40%), Gaps = 37/176 (21%)
Query: 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKNKSIL 92
G+ H L GPPG GK++L + + L +++ + ++ +L + + +L
Sbjct: 48 GEVLDH-VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL 106
Query: 93 VVGDIDYLTLHI--LLRSSCMDMHIHMSY------------CTPFRFKMLASNYFGITEH 138
+ +I L + LL S+ D I + PF + A+ G+
Sbjct: 107 FIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL-VGATTRSGLLSS 165
Query: 139 PL--------------LTEIDELIEKA----NVTLADVVEQLMRNK---VPEIALR 173
PL + E+ E+I++A +V + D +++ + P IA+R
Sbjct: 166 PLRSAFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIR 221
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 26 KEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
KE N+G + + F+YG GTGK+ L+ A N
Sbjct: 27 KEALENLGSLY-NPIFIYGSVGTGKTHLLQAAGN 59
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 25 RKEFYRNVGKAWK---HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----NM 77
+K +++ GK + LYGPPG GK++ + L +D+ + + + N
Sbjct: 62 KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNA 121
Query: 78 ELRNML 83
++N L
Sbjct: 122 GVKNAL 127
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 26 KEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
KE N+G + + F+YG GTGK+ L+ A N
Sbjct: 26 KEALENLGSLY-NPIFIYGSVGTGKTHLLQAAGN 58
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 26 KEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
KE N+G + + F+YG GTGK+ L+ A N
Sbjct: 27 KEALENLGSLY-NPIFIYGSVGTGKTHLLQAAGN 59
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 35/175 (20%)
Query: 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKNKSIL 92
G+ H L GPPG GK++L + + L +++ + ++ +L + + +L
Sbjct: 48 GEVLDH-VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL 106
Query: 93 VVGDIDYLTLHI--LLRSSCMDMHIHMSY------------CTPF-------RFKMLAS- 130
+ +I L + LL S+ D I + PF R +L+S
Sbjct: 107 FIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATVRSGLLSSP 166
Query: 131 --NYFGIT---EHPLLTEIDELIEKA----NVTLADVVEQLMRNK---VPEIALR 173
+ FGI + + E+ E+I++A +V + D +++ + P IA+R
Sbjct: 167 LRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIR 221
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 35/175 (20%)
Query: 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKNKSIL 92
G+ H L GPPG GK++L + + L +++ + ++ +L + + +L
Sbjct: 48 GEVLDH-VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL 106
Query: 93 VVGDIDYLTLHI--LLRSSCMDMHIHMSY------------CTPF-------RFKMLAS- 130
+ +I L + LL S+ D I + PF R +L+S
Sbjct: 107 FIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGSTTRSGLLSSP 166
Query: 131 --NYFGIT---EHPLLTEIDELIEKA----NVTLADVVEQLMRNK---VPEIALR 173
+ FGI + + E+ E+I++A +V + D +++ + P IA+R
Sbjct: 167 LRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIR 221
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKNKSIL 92
G+ H L GPPG GK++L + + L +++ + ++ +L + + +L
Sbjct: 48 GEVLDH-VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVL 106
Query: 93 VVGDIDYLTLHI--LLRSSCMDMHIHM 117
+ +I L + LL S+ D I +
Sbjct: 107 FIDEIHRLNKAVEELLYSAIEDFQIDI 133
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 41 FLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRN 81
+ GP G+GKS+LI +T +L D E + EN ++ N
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKAD----EGRVYFENKDITN 73
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 41 FLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRN 81
+ GP G+GKS+LI +T +L D E + EN ++ N
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKAD----EGRVYFENKDITN 73
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 41 FLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRN 81
+ GP G+GKS+LI +T +L D E + EN ++ N
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKAD----EGRVYFENKDITN 73
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp
From Thermus Thermophilus
Length = 254
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 22 FVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
F+K + +G L GPPG GK+ L A+
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71
>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) And Manganese(Ii) Ions
pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) Ion
Length = 222
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 63 FDVYDLELTTFKENMELRNMLIATKNKSILVVGD 96
F +YDL T F E EL+ M++A ++S LV+ +
Sbjct: 117 FKLYDLRQTGFIEREELKEMVVALLHESELVLSE 150
>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
Kinase Atsos2 Bound To The Calcium Sensor Atsos3
Length = 207
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 63 FDVYDLELTTFKENMELRNMLIATKNKSILVVGD 96
F +YDL T F E EL+ M++A ++S LV+ +
Sbjct: 117 FKLYDLRQTGFIEREELKEMVVALLHESELVLSE 150
>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
Length = 314
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 20 ERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMEL 79
E V+R E GK YFL+ G GK ++ D Y + E +
Sbjct: 15 ETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEY-----IYHETLVH 69
Query: 80 RNMLIATKNKSILVVGDIDYLTLHILLRSSCMD 112
ML + K +L+VG + TL +L+ ++
Sbjct: 70 PAMLTHPEPKRVLIVGGGEGATLREVLKHPTVE 102
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 42 LYGPPGTGKSSLIAAMTNYL------NFDVYDLELTTFKENMELRNMLIATKNKSILVVG 95
+ GP GTGKS+ + + L + D +D + F+ N EL+N KN I V
Sbjct: 52 IVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGN-ELQNYFEKLKNGEIRPVV 110
Query: 96 DIDYLTL 102
Y+ L
Sbjct: 111 KPQYVDL 117
>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
Length = 314
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 20 ERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMEL 79
E V+R E GK YFL+ G GK ++ D Y + E +
Sbjct: 15 ETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEY-----IYHETLVH 69
Query: 80 RNMLIATKNKSILVVGDIDYLTLHILLRSSCMD 112
ML + K +L+VG + TL +L+ ++
Sbjct: 70 PAMLTHPEPKRVLIVGGGEGATLREVLKHPTVE 102
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 22 FVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
F+K + +G L GPPG GK+ L A+
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 22 FVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
F+K + +G L GPPG GK+ L A+
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 22 FVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
F+K + +G L GPPG GK+ L A+
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 16 MDDL---ERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61
+DD+ E VKR + Y G + H F GPPG GK++ A+ L
Sbjct: 24 LDDIVGQEHIVKRLKHYVKTG-SMPHLLF-AGPPGVGKTTAALALAREL 70
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 37 KHSYFLYGPPGTGKSSLIAAMTNYL-NFDVYDLELTTFKENMELRNMLIA 85
K L GPPG+GK+ + M N L N +YD+ F ++ ++L A
Sbjct: 1048 KRGIILCGPPGSGKTMI---MNNALRNSSLYDVVGINFSKDTTTEHILSA 1094
>pdb|2ZFD|A Chain A, The Crystal Structure Of Plant Specific Calcium Binding
Protein Atcbl2 In Complex With The Regulatory Domain Of
Atcipk14
Length = 226
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 60 YLNFDVYDLELTTFKENMELRNMLIATKNKS 90
+ +F +YDL+ F E E++ M++AT +S
Sbjct: 125 HFSFQLYDLKQQGFIERQEVKQMVVATLAES 155
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 37 KHSYFLYGPPGTGKSSLIAAMTNYL-NFDVYDLELTTFKENMELRNMLIA 85
K L GPPG+GK+ + M N L N +YD+ F ++ ++L A
Sbjct: 1267 KRGIILCGPPGSGKTMI---MNNALRNSSLYDVVGINFSKDTTTEHILSA 1313
>pdb|1UHN|A Chain A, The Crystal Structure Of The Calcium Binding Protein
Atcbl2 From Arabidopsis Thaliana
Length = 189
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 60 YLNFDVYDLELTTFKENMELRNMLIATKNKSILVVGD 96
+ +F +YDL+ F E E++ M++AT +S + + D
Sbjct: 94 HFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKD 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,230,213
Number of Sequences: 62578
Number of extensions: 199454
Number of successful extensions: 850
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 69
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)