BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041769
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
+ ++ + ++K +++D++ F+ + +YRN G ++ Y LYG PG GKSSLI A+
Sbjct: 185 SLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGE 244
Query: 61 LNFDVYDLELTTFK-ENMELRNMLIATKNKSILVVGDID 98
LN D+ + L++ ++ ++ ++L KSIL++ DID
Sbjct: 245 LNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIEDID 283
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61
++ ++SN+K+MI DD+ F++ ++Y G ++ Y LYGPPG+GK+S + A+ L
Sbjct: 207 LSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGEL 266
Query: 62 NFDVYDLELTTFK-ENMELRNMLIATKNKSILVVGDIDYLTLHILLRSSCMDMHIHMSYC 120
++D+ L L + L ++L K+++++ D+D RS + H ++++
Sbjct: 267 DYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDS-AFQGRERSGEVGFHANVTFS 325
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Query: 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF 63
++ +DS +K+ I+DD+ F+K ++Y + G ++ Y LYGPPG+GK+S I A+ L++
Sbjct: 227 SVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDY 286
Query: 64 DVYDLELTTFKENM---ELRNMLIATKNKSILVVGDID 98
++ L L+ + N+ L +++ +SIL++ DID
Sbjct: 287 NICILNLS--ENNLTDDRLNHLMNNMPERSILLLEDID 322
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN 62
++ +D ++I+ D+++F+ ++Y + G ++ Y LYGPPGTGKSS I A+ L
Sbjct: 207 SSVILDKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQ 266
Query: 63 FDVYDLELTTFKENMELRNMLIATK-NKSILVVGDID 98
+ L L + N L+AT +SI+++ DID
Sbjct: 267 LSICILNLAGKSVSDTSLNQLLATAPQRSIILLEDID 303
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61
++ ++S + + I+DD++ F+ ++Y + G ++ Y LYGPPG GKSS I A+ L
Sbjct: 188 LSSVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 62 NFDVYDLELTTFK-ENMELRNMLIATKNKSILVVGDID 98
+ + + L+ + L ++L +SI+++ D+D
Sbjct: 248 GYSICLMSLSDRSLSDDRLNHLLSVAPQQSIILLEDVD 285
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN 62
++ ++ + + I+ D++ F++ ++Y + G ++ Y LYGPPG GKSS I A+ L
Sbjct: 189 SSVVLEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELE 248
Query: 63 FDV-YDLELTTFKENMELRNMLIATKNKSILVVGDID 98
+ + + + L ++L +SI+++ D+D
Sbjct: 249 YSICLMSLSDSSLSDDRLNHLLSVAPQQSIILLEDVD 285
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61
D++ + + I+ D+ F+ ++Y + G ++ Y LYGPPG GKSS I A+ L
Sbjct: 188 LDSVVLQQGLADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 62 NFDV-YDLELTTFKENMELRNMLIATKNKSILVVGDID 98
+ + + L ++L +S++++ D+D
Sbjct: 248 EHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVD 285
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61
+++ + + I+ D++ F+ ++Y + G ++ Y LYGPPG GKSS I A+ L
Sbjct: 188 LNSVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 62 NFDV-YDLELTTFKENMELRNMLIATKNKSILVVGDID 98
+ + + L ++L +S++++ D+D
Sbjct: 248 EHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVD 285
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61
+++ ++ + + I+ D+ F+ ++Y + G ++ Y LYGPPG GKSS I A+ L
Sbjct: 188 LNSVVLEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 62 NFDV-YDLELTTFKENMELRNMLIATKNKSILVVGDID 98
+ + + L ++L +S++++ D+D
Sbjct: 248 QHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVD 285
>sp|Q5UPR4|YR776_MIMIV Uncharacterized protein R776 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R776 PE=4 SV=1
Length = 314
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 7 MDSNMK---QMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF 63
+DSN+ + ++ D++ F++ ++ YR +G ++ LYG G GK+ LI+ ++N
Sbjct: 168 LDSNLTTEMRSVLKDVDVFMRNEDTYRELGANYRRGMLLYGESGCGKTGLISIISNKYGM 227
Query: 64 DVYDLELTTFKENME---LRNMLIATKNKSILVVGDID 98
D Y L L + ++M L ++ K +SILV+ +ID
Sbjct: 228 DSYILNLNS--KDMSDSVLISLASNVKARSILVIEEID 263
>sp|O34703|YJOB_BACSU Uncharacterized ATPase YjoB OS=Bacillus subtilis (strain 168)
GN=yjoB PE=1 SV=1
Length = 423
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 7 MDSNMKQMIMDDLERFVKR-KEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDV 65
M+ +K+ I +++F K FY+ +K LYGPPG GK++L+ ++ ++ V
Sbjct: 189 MNPLLKKEIYRSIDQFFHSDKSFYQTYDIPYKRGILLYGPPGNGKTTLVKSIAGSIDAPV 248
Query: 66 YDLELTTFKENMELRNMLIATKN--KSILVVGDID 98
++T F + + + A + ++LV+ DID
Sbjct: 249 AYWQITEFTSSETIEEVFQAARRLAPAVLVIEDID 283
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 12 KQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
KQ I + +E + + + YR +G LYGPPGTGK+ L+ A+ N+
Sbjct: 143 KQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANH 191
>sp|Q9YBS5|RFCL_AERPE Replication factor C large subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcL PE=3 SV=2
Length = 479
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 34 KAW-------KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIAT 86
KAW K + LYGPPG GK+SL+ A+ + N ++ +L + ++ ++ ++ A
Sbjct: 39 KAWLEGRKPDKRAALLYGPPGVGKTSLVEAIASEFNLEMIELNASDYRRRSDIERIVGAA 98
Query: 87 KNK 89
K
Sbjct: 99 SRK 101
>sp|A8AC24|RFCL_IGNH4 Replication factor C large subunit OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=rfcL PE=3
SV=1
Length = 476
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKNKSIL 92
K + L+GPPG GK+SL+ A+ N N + ++ + F+ ++ + IA K L
Sbjct: 43 KRAALLWGPPGVGKTSLVEAICNEFNLEKIEMNASDFRRKGDIERVAIAAATKKPL 98
>sp|A3DNV8|RFCL_STAMF Replication factor C large subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcL PE=3 SV=1
Length = 423
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 24/195 (12%)
Query: 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN 62
D + DS KQ I LE ++K GK K + LYGP G GK+SL+ A N
Sbjct: 18 DVVNQDSAKKQFI-QWLESWLK--------GKPSKKAALLYGPAGCGKTSLVEAAANEYG 68
Query: 63 FDVYDLELTTFKENMELRNML-IATKNKSILVVGDIDYL----TLHILLRSSCMDMHIHM 117
++ ++ + F+ ++ + A +S+ G I L + +D +H+
Sbjct: 69 LEIVEMNASDFRRRQDIERIAKTAAFMRSLFARGKIILLDEVDGISGTADRGAIDAILHL 128
Query: 118 SYCTPFRFKMLASNYFGITEHP-----LLTEIDELIEKANVTLADVVEQLMRNKVPEIAL 172
T + M A+N + P L+ L E+ + + + QL + + + AL
Sbjct: 129 LEITRYPVVMTANNPWDQKLKPLRDASLMIAFKRLSERDVIIVLKRICQLEKLECEDAAL 188
Query: 173 RGLTDVFKIKQTEND 187
R + +++E D
Sbjct: 189 REIA-----RRSEGD 198
>sp|Q8SQK0|PRS8_ENCCU 26S protease regulatory subunit 8 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT6 PE=1 SV=1
Length = 453
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 6 AMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
+D +K+ I + +E +K E + N+G A LYGPPGTGK+ L A+ ++
Sbjct: 200 GLDEQIKE-IREVIELPIKHPELFENLGIAQPKGVLLYGPPGTGKTLLARAVAHH 253
>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
Length = 389
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 12 KQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
KQ + + +E + + + YR +G LYGPPGTGK+ L+ A+ N
Sbjct: 143 KQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 190
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN 62
D +D +++ I + +E+ +K E + VG LYGPPGTGK+ L A+ N+ +
Sbjct: 180 DIGGLDEQIRE-IREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHAD 238
>sp|C5CBU4|ARC_MICLC AAA ATPase forming ring-shaped complexes OS=Micrococcus luteus
(strain ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 /
NCIMB 9278 / NCTC 2665 / VKM Ac-2230) GN=arc PE=3 SV=1
Length = 584
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 27 EFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTF--KENMELRNMLI 84
E YR G LYGPPGTGK+ L A+ N L+ D E + F + EL N +
Sbjct: 272 EVYREHGLRAPKGIMLYGPPGTGKTMLAKAVANALSARSADGERSFFLNVKGPELLNKYV 331
Query: 85 ATKNKSILVVGD 96
+ I V+ D
Sbjct: 332 GETERQIRVIFD 343
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 12 KQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
KQ I + +E + E Y+ +G LYGPPGTGK+ L A+ N+
Sbjct: 170 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 218
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 12 KQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
KQ I + +E + E Y+ +G LYGPPGTGK+ L A+ N+
Sbjct: 164 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212
>sp|P60373|RFCL_NANEQ Replication factor C large subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcL PE=3 SV=1
Length = 430
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 16/108 (14%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
T D + KQ++ D + + K+ Y+ GKA LYGPPGTGK+S + A+ N
Sbjct: 41 TLDEVENQEQAKQILRDYVINYKKK---YK--GKA----LLLYGPPGTGKTSSVYALANE 91
Query: 61 LNFDVYDLELTTFKENMELRNMLI-ATKNKS------ILVVGDIDYLT 101
L ++V ++ + ++ + + +++ A+K K I++V ++D L+
Sbjct: 92 LGYEVLEVNASDERDAIHIHHIVGEASKGKPLFHKGRIILVDEVDGLS 139
>sp|Q8NB90|SPAT5_HUMAN Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1
SV=3
Length = 893
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
T+D + S+ + I + +E +K+ E +++ G LYGPPGTGK+ + A+ N
Sbjct: 351 TYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRGVLLYGPPGTGKTMIARAVAN 409
>sp|Q94BQ2|PRS8B_ARATH 26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana
GN=RPT6B PE=2 SV=1
Length = 419
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 1 TFDTLA-MDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
T+D + +D +K+ I + +E +K E + ++G A LYGPPGTGK+ L A+ +
Sbjct: 159 TYDMIGGLDQQIKE-IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 217
Query: 60 Y 60
+
Sbjct: 218 H 218
>sp|Q9C5U3|PRS8A_ARATH 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana
GN=RPT6A PE=2 SV=1
Length = 419
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 1 TFDTLA-MDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
T+D + +D +K+ I + +E +K E + ++G A LYGPPGTGK+ L A+ +
Sbjct: 159 TYDMIGGLDQQIKE-IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 217
Query: 60 Y 60
+
Sbjct: 218 H 218
>sp|P34124|PRS8_DICDI 26S protease regulatory subunit 8 OS=Dictyostelium discoideum
GN=psmC5 PE=1 SV=2
Length = 403
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 1 TFDTLA-MDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
T+D + +D +K+ I + +E +K E + ++G A LYGPPGTGK+ L A+ +
Sbjct: 143 TYDMVGGLDKQIKE-IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 201
Query: 60 Y 60
+
Sbjct: 202 H 202
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT6 PE=1
SV=4
Length = 405
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
T+D + + + I + +E VK E + ++G A LYGPPGTGK+ L A+ ++
Sbjct: 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205
>sp|B3R0R7|FTSH3_PHYMT ATP-dependent zinc metalloprotease FtsH 3 OS=Phytoplasma mali
(strain AT) GN=ftsH3 PE=3 SV=1
Length = 599
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
TF +A ++ K+ M +L F+K+ + Y +G A L GPPGTGK+ L A+
Sbjct: 172 TFKDVAGNTEEKEE-MTELIDFLKQPQKYETIGAAIPRGVLLEGPPGTGKTLLAKALAGE 230
Query: 61 LNFDVYDLELTTFKE 75
+ Y + + F E
Sbjct: 231 ASVPFYAVSGSEFVE 245
>sp|C7MC16|FTSH_BRAFD ATP-dependent zinc metalloprotease FtsH OS=Brachybacterium faecium
(strain ATCC 43885 / DSM 4810 / NCIB 9860) GN=ftsH PE=3
SV=1
Length = 704
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 16 MDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE 75
+D++++F+ Y+ VG LYGPPGTGK+ L A+ N Y + + F E
Sbjct: 189 LDEIKQFLVDPGRYQAVGAKIPKGVLLYGPPGTGKTLLAKAVAGEANVPFYSISGSDFVE 248
Query: 76 NM------ELRNMLIATKNK--SILVVGDIDYLTLH 103
+R++ K +I+ + +ID + H
Sbjct: 249 MFVGVGASRVRDLFNTAKENAPAIIFIDEIDAVGRH 284
>sp|A1RWU6|RFCL_THEPD Replication factor C large subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcL PE=3 SV=1
Length = 413
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKN-KSI 91
GK K + LYGPPG+GK+S++ A ++++ +L + + L+ L+ N +S+
Sbjct: 43 GKPSKKAALLYGPPGSGKTSIVHATAKEFSWELIELNASDVRTREALQQRLLGALNTRSV 102
Query: 92 L 92
L
Sbjct: 103 L 103
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 13 QMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN 62
Q + + +E + R E + VG LYGPPGTGK+ L A+ N N
Sbjct: 160 QEVRETVEMPLDRPEMFAEVGIDPPSGVLLYGPPGTGKTMLAKAVANQTN 209
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 12 KQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
KQ I + +E + + + Y+ +G LYGPPGTGK+ L+ A+ N
Sbjct: 175 KQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 222
>sp|B3R057|FTSH1_PHYMT ATP-dependent zinc metalloprotease FtsH 1 OS=Phytoplasma mali
(strain AT) GN=ftsH1 PE=3 SV=1
Length = 600
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
TF +A ++ K+ M +L F+K+ + Y +G A L GPPGTGK+ L A+
Sbjct: 173 TFKDVAGNTEEKEE-MTELIDFLKQPQKYETIGAAIPKGVLLEGPPGTGKTLLAKALAGE 231
Query: 61 LNFDVYDLELTTFKE 75
+ Y + + F E
Sbjct: 232 ASVPFYAVSGSEFVE 246
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 12 KQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
KQ I + +E + + + Y +G LYGPPGTGK+ L+ A+ N
Sbjct: 181 KQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
>sp|A9KIG5|FTSH_CLOPH ATP-dependent zinc metalloprotease FtsH OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=ftsH PE=3 SV=1
Length = 577
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 5 LAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD 64
+A ++ K M+ D ++ F+K E Y +G LYGPPGTGK+ + A+
Sbjct: 148 VAGNAEAKSMVGDIID-FIKEPEKYSALGARMPKGVMLYGPPGTGKTLIAKAIATEAGVP 206
Query: 65 VYDLELTTF 73
Y + + F
Sbjct: 207 FYAMSGSDF 215
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
TFD +A +N K+ + + +E F+R VG L GPPGTGK+ L A+
Sbjct: 174 TFDEVAGQTNAKREVQELVEYLRDPDRFHR-VGALAPRGVLLMGPPGTGKTLLARALAGE 232
Query: 61 LNFDVYDLELTTFKE 75
+ Y + + F E
Sbjct: 233 AGVNFYPMSASEFIE 247
>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis
thaliana GN=CDC48B PE=2 SV=1
Length = 603
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 30 RNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
R +G W LYGPPGTGK+SL+ A+
Sbjct: 49 RTLGLKWPRGLLLYGPPGTGKTSLVRAVVQ 78
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
TF +A + KQ + +++ F+K E Y +G L GPPGTGK+ L A+
Sbjct: 194 TFKDVAGLAEAKQEV-EEIVSFLKNPEKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGE 252
Query: 61 LNFDVYDLELTTFKE------NMELRNMLIATKNKSILVV 94
N + L + F E +R++ K KS +V
Sbjct: 253 ANVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIV 292
>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
Length = 410
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 15 IMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTF- 73
+ + +E +K+ E + +G LYGPPGTGK+ L A+ + N + + F
Sbjct: 163 VKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFV 222
Query: 74 ----KENMEL-RNM--LIATKNKSILVVGDIDYLTLHILLRSSCMDMHIHMS 118
E L R + L K+ SI+ + +ID + L S+ D + +
Sbjct: 223 RKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQRT 274
>sp|Q6P4W8|PCH2_XENTR Pachytene checkpoint protein 2 homolog OS=Xenopus tropicalis
GN=trip13 PE=2 SV=1
Length = 432
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGK---AWKHSYFLYGPPGTGKSSLIAAMT 58
+D+L DS +K ++D +E + + +NV +W L+GPPGTGK+SL A+
Sbjct: 136 WDSLIYDSEIKSRLLDYIETAMLFSD--KNVDSNLISWNRVVLLHGPPGTGKTSLCKALA 193
Query: 59 NYL 61
L
Sbjct: 194 QKL 196
>sp|Q67T82|FTSH2_SYMTH ATP-dependent zinc metalloprotease FtsH 2 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH2 PE=3 SV=1
Length = 587
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN 62
D MD ++ +++ ++K + YR +G LYGPPGTGK+ L A+
Sbjct: 153 DVAGMDEVKGEL--EEIVDYLKNPDKYRAIGARIPKGVLLYGPPGTGKTLLARAVAGEAG 210
Query: 63 FDVYDLELTTFKE 75
+ L ++F E
Sbjct: 211 VPFFALSGSSFVE 223
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 413
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
T++ + KQ I + +E + E Y+ +G LYGPPGTGK+ L A+ ++
Sbjct: 158 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 217
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
T+ + N Q I + +E + E+Y +G LYGPPGTGK+ L A+ N
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN 241
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
T+ + N Q I + +E + E+Y +G LYGPPGTGK+ L A+ N
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN 241
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59
T+ + N Q I + +E + E+Y +G LYGPPGTGK+ L A+ N
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN 241
>sp|Q07844|RIX7_YEAST Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RIX7 PE=1 SV=1
Length = 837
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 25/137 (18%)
Query: 23 VKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNM 82
+KR E Y VG + L+GPPG GK+ L A+ N E R
Sbjct: 553 IKRPELYEKVGISAPGGVLLWGPPGCGKTLLAKAVAN------------------ESRAN 594
Query: 83 LIATKNKSIL--VVGDIDYLTLHILLRS----SCMDMHIHMSYCTPFRFKMLASNYFGIT 136
I+ K +L VG+ + + R+ C+ + P R L+ + +
Sbjct: 595 FISIKGPELLNKYVGESERSIRQVFTRARASVPCVIFFDELDALVPRRDTSLSESSSRVV 654
Query: 137 EHPLLTEIDELIEKANV 153
+ LLTE+D L ++ +
Sbjct: 655 -NTLLTELDGLNDRRGI 670
>sp|P62198|PRS8_RAT 26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5
PE=1 SV=1
Length = 406
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 6 AMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
+D +K+ I + +E VK E + +G A LYGPPGTGK+ L A+ ++
Sbjct: 153 GLDKQIKE-IKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
>sp|P62197|PRS8_PIG 26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1
Length = 406
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 6 AMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
+D +K+ I + +E VK E + +G A LYGPPGTGK+ L A+ ++
Sbjct: 153 GLDKQIKE-IKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
>sp|P62196|PRS8_MOUSE 26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1
SV=1
Length = 406
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 6 AMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
+D +K+ I + +E VK E + +G A LYGPPGTGK+ L A+ ++
Sbjct: 153 GLDKQIKE-IKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
>sp|P62195|PRS8_HUMAN 26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1
SV=1
Length = 406
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 6 AMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60
+D +K+ I + +E VK E + +G A LYGPPGTGK+ L A+ ++
Sbjct: 153 GLDKQIKE-IKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,744,657
Number of Sequences: 539616
Number of extensions: 2807238
Number of successful extensions: 17946
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 278
Number of HSP's that attempted gapping in prelim test: 17421
Number of HSP's gapped (non-prelim): 802
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)