Query 041769
Match_columns 204
No_of_seqs 140 out of 2041
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 10:26:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 6.9E-34 1.5E-38 239.1 20.2 188 1-188 199-440 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-32 2.4E-37 225.7 13.9 164 1-164 149-367 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 9.8E-28 2.1E-32 209.0 14.7 163 1-163 432-646 (693)
4 KOG0734 AAA+-type ATPase conta 99.9 1.7E-26 3.8E-31 197.2 13.3 161 1-162 302-514 (752)
5 KOG0733 Nuclear AAA ATPase (VC 99.9 5.3E-26 1.1E-30 196.7 15.9 159 1-162 188-404 (802)
6 KOG0733 Nuclear AAA ATPase (VC 99.9 5.7E-26 1.2E-30 196.4 16.0 162 1-162 509-726 (802)
7 KOG0727 26S proteasome regulat 99.9 1.3E-25 2.8E-30 177.2 11.5 163 1-163 153-370 (408)
8 KOG0736 Peroxisome assembly fa 99.9 6.1E-25 1.3E-29 194.0 15.0 160 1-162 670-888 (953)
9 KOG0728 26S proteasome regulat 99.9 2E-25 4.3E-30 176.0 10.6 163 2-164 146-363 (404)
10 KOG0731 AAA+-type ATPase conta 99.9 1E-24 2.2E-29 194.7 16.4 162 1-163 309-527 (774)
11 PTZ00454 26S protease regulato 99.9 2.4E-24 5.1E-29 184.1 16.2 163 1-163 143-360 (398)
12 KOG0726 26S proteasome regulat 99.9 3.1E-25 6.7E-30 178.0 6.4 164 1-164 183-401 (440)
13 PRK03992 proteasome-activating 99.9 1.6E-23 3.6E-28 179.1 15.9 161 1-163 129-346 (389)
14 KOG0738 AAA+-type ATPase [Post 99.9 1.7E-23 3.6E-28 173.3 14.1 172 1-180 210-438 (491)
15 PTZ00361 26 proteosome regulat 99.9 4.5E-23 9.9E-28 177.5 15.1 163 1-163 181-398 (438)
16 KOG0652 26S proteasome regulat 99.9 1.5E-23 3.3E-28 166.2 10.6 164 1-164 169-387 (424)
17 TIGR01243 CDC48 AAA family ATP 99.9 9.8E-23 2.1E-27 186.8 17.4 162 1-162 451-665 (733)
18 KOG0735 AAA+-type ATPase [Post 99.9 1.2E-22 2.6E-27 178.4 15.7 162 1-162 665-878 (952)
19 CHL00195 ycf46 Ycf46; Provisio 99.9 1.3E-22 2.7E-27 177.1 14.6 160 1-163 226-438 (489)
20 TIGR01241 FtsH_fam ATP-depende 99.9 2.7E-22 5.8E-27 176.7 15.3 181 1-182 53-295 (495)
21 COG1223 Predicted ATPase (AAA+ 99.9 5.1E-22 1.1E-26 157.3 13.7 159 1-164 119-329 (368)
22 KOG0729 26S proteasome regulat 99.9 7.9E-23 1.7E-27 162.6 9.1 163 1-165 175-394 (435)
23 KOG0737 AAA+-type ATPase [Post 99.9 7.1E-22 1.5E-26 162.9 14.2 175 1-182 90-319 (386)
24 COG0464 SpoVK ATPases of the A 99.9 3.6E-21 7.7E-26 169.6 19.1 163 1-163 240-456 (494)
25 COG0465 HflB ATP-dependent Zn 99.9 6.9E-22 1.5E-26 173.7 12.8 161 1-162 148-363 (596)
26 TIGR03689 pup_AAA proteasome A 99.9 1.5E-21 3.3E-26 170.5 14.6 158 1-162 180-403 (512)
27 CHL00176 ftsH cell division pr 99.9 3.5E-21 7.7E-26 172.7 15.8 162 1-163 181-397 (638)
28 TIGR01242 26Sp45 26S proteasom 99.9 3.1E-21 6.7E-26 164.0 14.3 161 1-163 120-337 (364)
29 KOG0739 AAA+-type ATPase [Post 99.9 6.6E-22 1.4E-26 159.3 8.2 156 1-159 131-340 (439)
30 PF05496 RuvB_N: Holliday junc 99.8 7.1E-20 1.5E-24 143.4 13.7 134 1-143 22-202 (233)
31 KOG0651 26S proteasome regulat 99.8 2.3E-20 5E-25 150.9 9.0 162 1-164 130-348 (388)
32 TIGR01243 CDC48 AAA family ATP 99.8 3.1E-19 6.7E-24 163.8 17.4 162 1-162 176-389 (733)
33 PLN00020 ribulose bisphosphate 99.8 6.3E-19 1.4E-23 146.9 15.8 146 1-150 113-327 (413)
34 PRK10733 hflB ATP-dependent me 99.8 3.3E-19 7.1E-24 161.1 14.8 162 1-163 150-366 (644)
35 CHL00206 ycf2 Ycf2; Provisiona 99.8 1.3E-18 2.7E-23 166.3 12.5 135 26-162 1619-1850(2281)
36 COG2255 RuvB Holliday junction 99.8 2E-18 4.2E-23 138.4 11.3 127 1-136 24-197 (332)
37 KOG0732 AAA+-type ATPase conta 99.8 9.3E-18 2E-22 154.2 13.7 162 1-162 263-482 (1080)
38 KOG0730 AAA+-type ATPase [Post 99.7 1.7E-17 3.7E-22 145.4 12.9 159 4-163 185-395 (693)
39 KOG0740 AAA+-type ATPase [Post 99.7 1.3E-16 2.7E-21 135.7 10.9 162 1-165 151-367 (428)
40 KOG0741 AAA+-type ATPase [Post 99.7 6.6E-17 1.4E-21 138.8 8.7 137 25-163 244-449 (744)
41 PRK00080 ruvB Holliday junctio 99.6 5E-15 1.1E-19 124.3 13.8 92 1-100 23-114 (328)
42 TIGR02881 spore_V_K stage V sp 99.6 1.8E-14 4E-19 117.2 15.6 131 2-135 5-193 (261)
43 TIGR00635 ruvB Holliday juncti 99.6 9.1E-15 2E-19 121.4 12.8 92 1-100 2-93 (305)
44 TIGR02880 cbbX_cfxQ probable R 99.6 3.1E-14 6.7E-19 117.2 15.6 129 4-136 23-211 (284)
45 CHL00181 cbbX CbbX; Provisiona 99.6 6.8E-14 1.5E-18 115.3 17.1 130 3-136 23-212 (287)
46 KOG0989 Replication factor C, 99.6 5.4E-15 1.2E-19 119.8 9.2 169 1-184 34-236 (346)
47 COG0466 Lon ATP-dependent Lon 99.6 3E-14 6.5E-19 126.4 13.7 161 4-184 324-555 (782)
48 COG2256 MGS1 ATPase related to 99.6 3.5E-14 7.5E-19 118.9 11.5 62 38-100 49-116 (436)
49 KOG2004 Mitochondrial ATP-depe 99.5 1.4E-13 3.1E-18 121.9 15.0 173 3-194 411-653 (906)
50 KOG0742 AAA+-type ATPase [Post 99.5 2.3E-14 4.9E-19 120.3 9.3 128 2-134 354-529 (630)
51 PRK04195 replication factor C 99.5 1.4E-13 3E-18 121.2 14.4 92 1-101 12-111 (482)
52 PF00004 AAA: ATPase family as 99.5 8.2E-14 1.8E-18 101.1 7.8 61 40-100 1-70 (132)
53 TIGR00763 lon ATP-dependent pr 99.5 2E-12 4.2E-17 119.7 16.2 120 4-133 321-505 (775)
54 KOG1969 DNA replication checkp 99.5 4.1E-12 9E-17 113.0 17.1 183 2-185 270-521 (877)
55 PRK06893 DNA replication initi 99.5 1.7E-12 3.6E-17 103.8 13.3 61 38-100 40-103 (229)
56 PLN03025 replication factor C 99.5 1.3E-12 2.8E-17 109.3 13.2 90 1-103 11-114 (319)
57 COG0542 clpA ATP-binding subun 99.4 1E-12 2.2E-17 119.1 12.7 165 3-183 491-751 (786)
58 PRK14956 DNA polymerase III su 99.4 1.9E-12 4.2E-17 112.3 13.2 166 1-179 16-227 (484)
59 PF05673 DUF815: Protein of un 99.4 2.4E-12 5.2E-17 102.4 12.5 125 1-134 25-208 (249)
60 PRK14962 DNA polymerase III su 99.4 4.8E-12 1E-16 110.7 14.7 90 1-102 12-131 (472)
61 PRK14958 DNA polymerase III su 99.4 4.6E-12 9.9E-17 111.9 14.5 95 1-107 14-141 (509)
62 TIGR02639 ClpA ATP-dependent C 99.4 1.8E-12 3.9E-17 119.3 12.0 94 37-133 203-358 (731)
63 PHA02544 44 clamp loader, smal 99.4 1.4E-11 3E-16 102.8 16.0 87 1-100 19-112 (316)
64 KOG0744 AAA+-type ATPase [Post 99.4 1.7E-12 3.6E-17 106.2 9.3 123 2-130 141-337 (423)
65 PRK13342 recombination factor 99.4 1.4E-11 3E-16 106.6 15.3 89 1-100 10-104 (413)
66 PRK11034 clpA ATP-dependent Cl 99.4 6.8E-12 1.5E-16 115.1 13.8 164 4-181 459-710 (758)
67 PRK14960 DNA polymerase III su 99.4 1.2E-11 2.6E-16 110.6 14.9 90 1-102 13-132 (702)
68 PRK07003 DNA polymerase III su 99.4 6.3E-12 1.4E-16 113.6 13.3 95 1-107 14-141 (830)
69 TIGR02639 ClpA ATP-dependent C 99.4 8.9E-12 1.9E-16 114.7 14.0 164 3-183 454-708 (731)
70 PRK12323 DNA polymerase III su 99.4 1.2E-11 2.7E-16 110.3 14.3 95 1-107 14-146 (700)
71 PRK14964 DNA polymerase III su 99.4 2.2E-11 4.8E-16 106.6 15.5 95 1-107 11-138 (491)
72 PRK14951 DNA polymerase III su 99.4 1.8E-11 3.9E-16 109.8 14.2 95 1-107 14-146 (618)
73 PRK08727 hypothetical protein; 99.3 3.2E-11 7E-16 96.6 14.0 61 38-100 42-105 (233)
74 PRK06645 DNA polymerase III su 99.3 9.9E-11 2.2E-15 103.1 18.0 90 1-102 19-142 (507)
75 PRK10787 DNA-binding ATP-depen 99.3 2E-11 4.3E-16 112.7 14.1 162 4-182 323-551 (784)
76 PF00308 Bac_DnaA: Bacterial d 99.3 1.5E-11 3.2E-16 97.7 11.3 92 1-100 6-109 (219)
77 PRK08691 DNA polymerase III su 99.3 3.9E-11 8.4E-16 108.0 14.9 90 1-102 14-133 (709)
78 KOG0991 Replication factor C, 99.3 1.7E-11 3.7E-16 96.4 11.0 143 39-182 50-222 (333)
79 PRK14961 DNA polymerase III su 99.3 1.2E-10 2.6E-15 99.1 16.9 90 1-102 14-133 (363)
80 PRK13341 recombination factor 99.3 2.8E-11 6.1E-16 110.6 13.6 90 1-101 26-122 (725)
81 PRK14969 DNA polymerase III su 99.3 6.5E-11 1.4E-15 105.1 15.4 95 1-107 14-141 (527)
82 PRK14952 DNA polymerase III su 99.3 7.3E-11 1.6E-15 105.4 15.6 91 1-103 11-133 (584)
83 PRK07994 DNA polymerase III su 99.3 5E-11 1.1E-15 107.3 14.4 95 1-107 14-141 (647)
84 PRK08084 DNA replication initi 99.3 8.3E-11 1.8E-15 94.4 14.2 61 38-100 46-109 (235)
85 PRK14963 DNA polymerase III su 99.3 8.6E-11 1.9E-15 103.7 15.3 89 1-101 12-129 (504)
86 PRK07764 DNA polymerase III su 99.3 6.6E-11 1.4E-15 109.4 14.7 91 1-103 13-135 (824)
87 PRK05563 DNA polymerase III su 99.3 1.2E-10 2.5E-15 104.2 15.5 95 1-107 14-141 (559)
88 PRK14957 DNA polymerase III su 99.3 2.9E-11 6.3E-16 107.1 11.3 90 1-102 14-133 (546)
89 PRK14949 DNA polymerase III su 99.3 2.5E-10 5.4E-15 105.1 17.6 95 1-107 14-141 (944)
90 CHL00095 clpC Clp protease ATP 99.3 7.7E-11 1.7E-15 109.8 14.1 86 2-100 178-283 (821)
91 TIGR03420 DnaA_homol_Hda DnaA 99.3 7.7E-11 1.7E-15 93.5 12.2 63 37-101 38-103 (226)
92 TIGR03345 VI_ClpV1 type VI sec 99.3 1.1E-10 2.4E-15 108.8 14.9 93 37-132 208-362 (852)
93 PRK14965 DNA polymerase III su 99.3 1.7E-10 3.8E-15 103.4 14.7 95 1-107 14-141 (576)
94 TIGR00362 DnaA chromosomal rep 99.2 1.1E-10 2.3E-15 100.8 12.4 98 38-136 137-284 (405)
95 PRK05896 DNA polymerase III su 99.2 3.1E-10 6.8E-15 101.1 15.3 90 1-102 14-133 (605)
96 PRK10865 protein disaggregatio 99.2 1E-10 2.3E-15 109.1 12.8 116 2-133 177-354 (857)
97 PRK12402 replication factor C 99.2 4.6E-10 1E-14 94.2 15.5 59 1-72 13-76 (337)
98 PRK14955 DNA polymerase III su 99.2 2.9E-10 6.3E-15 97.9 14.5 90 1-102 14-141 (397)
99 PRK11034 clpA ATP-dependent Cl 99.2 1.4E-10 3.1E-15 106.5 12.7 93 37-132 207-361 (758)
100 TIGR03346 chaperone_ClpB ATP-d 99.2 1.1E-10 2.3E-15 109.2 12.1 93 37-132 194-348 (852)
101 TIGR02397 dnaX_nterm DNA polym 99.2 8.8E-10 1.9E-14 93.2 16.3 88 1-100 12-129 (355)
102 PRK08903 DnaA regulatory inact 99.2 3.9E-10 8.5E-15 89.8 13.3 58 37-100 42-102 (227)
103 PRK08451 DNA polymerase III su 99.2 5.4E-10 1.2E-14 98.8 15.1 90 1-102 12-131 (535)
104 PRK05342 clpX ATP-dependent pr 99.2 6.9E-11 1.5E-15 101.8 9.2 98 4-101 72-186 (412)
105 CHL00095 clpC Clp protease ATP 99.2 3.1E-10 6.8E-15 105.7 14.3 90 3-100 509-623 (821)
106 PRK00149 dnaA chromosomal repl 99.2 2.1E-10 4.6E-15 100.3 12.4 96 38-134 149-294 (450)
107 PRK05642 DNA replication initi 99.2 3.4E-10 7.3E-15 90.8 12.5 61 38-100 46-109 (234)
108 PRK14953 DNA polymerase III su 99.2 8.9E-10 1.9E-14 96.9 15.7 90 1-102 14-133 (486)
109 PRK07940 DNA polymerase III su 99.2 9.9E-10 2.1E-14 94.2 15.5 97 1-100 3-129 (394)
110 TIGR02640 gas_vesic_GvpN gas v 99.2 4.4E-10 9.6E-15 91.6 12.7 36 37-72 21-56 (262)
111 PRK14959 DNA polymerase III su 99.2 7.5E-10 1.6E-14 99.1 15.1 90 1-102 14-133 (624)
112 KOG2028 ATPase related to the 99.2 2.8E-11 6E-16 100.7 5.3 62 39-100 164-234 (554)
113 TIGR03345 VI_ClpV1 type VI sec 99.2 2.2E-10 4.8E-15 106.8 11.5 91 3-100 566-680 (852)
114 PRK14954 DNA polymerase III su 99.2 1E-09 2.2E-14 98.9 15.1 90 1-102 14-141 (620)
115 TIGR03346 chaperone_ClpB ATP-d 99.2 6.5E-10 1.4E-14 104.0 14.3 90 3-100 565-679 (852)
116 PRK14970 DNA polymerase III su 99.2 1.3E-09 2.8E-14 92.9 15.0 89 1-101 15-121 (367)
117 PRK06620 hypothetical protein; 99.2 9.6E-10 2.1E-14 87.0 13.2 53 38-100 45-97 (214)
118 PRK06305 DNA polymerase III su 99.2 1.3E-09 2.8E-14 95.2 15.0 90 1-102 15-135 (451)
119 PRK07133 DNA polymerase III su 99.2 1.6E-09 3.4E-14 98.5 15.8 90 1-102 16-132 (725)
120 PRK12377 putative replication 99.2 2E-10 4.3E-15 92.7 9.0 93 1-100 72-175 (248)
121 PRK14086 dnaA chromosomal repl 99.1 4.7E-10 1E-14 100.1 12.1 98 38-136 315-462 (617)
122 PRK06647 DNA polymerase III su 99.1 1.6E-09 3.5E-14 96.8 15.6 95 1-107 14-141 (563)
123 PRK10865 protein disaggregatio 99.1 1.2E-09 2.6E-14 102.1 15.2 92 3-100 568-682 (857)
124 PRK08939 primosomal protein Dn 99.1 2.6E-10 5.6E-15 94.8 9.0 98 1-103 125-232 (306)
125 COG2607 Predicted ATPase (AAA+ 99.1 7.7E-10 1.7E-14 87.4 11.0 124 2-134 59-240 (287)
126 PRK07952 DNA replication prote 99.1 2.9E-10 6.4E-15 91.5 8.3 93 1-100 70-174 (244)
127 PRK09111 DNA polymerase III su 99.1 3.2E-09 7E-14 95.4 15.6 89 1-101 22-145 (598)
128 PRK14948 DNA polymerase III su 99.1 4.6E-09 1E-13 94.9 16.6 90 1-102 14-135 (620)
129 TIGR00382 clpX endopeptidase C 99.1 4E-10 8.7E-15 96.8 9.2 97 4-100 78-193 (413)
130 PRK14950 DNA polymerase III su 99.1 3.4E-09 7.4E-14 95.5 15.5 90 1-102 14-134 (585)
131 PRK14087 dnaA chromosomal repl 99.1 2E-09 4.3E-14 94.0 13.6 63 38-100 142-218 (450)
132 PRK14971 DNA polymerase III su 99.1 3.5E-09 7.6E-14 95.6 14.9 90 1-102 15-135 (614)
133 TIGR02928 orc1/cdc6 family rep 99.1 3E-09 6.5E-14 90.3 13.7 62 3-73 15-85 (365)
134 PRK00440 rfc replication facto 99.1 3.6E-09 7.8E-14 88.0 13.7 89 1-102 15-116 (319)
135 PRK09087 hypothetical protein; 99.1 3.6E-09 7.9E-14 84.4 13.0 54 39-100 46-99 (226)
136 PRK14088 dnaA chromosomal repl 99.1 2.1E-09 4.4E-14 93.7 12.3 63 38-100 131-206 (440)
137 COG1219 ClpX ATP-dependent pro 99.1 1.8E-09 3.8E-14 88.6 10.4 63 38-100 98-174 (408)
138 PF07724 AAA_2: AAA domain (Cd 99.0 2.6E-10 5.6E-15 87.2 5.1 65 38-102 4-82 (171)
139 COG0542 clpA ATP-binding subun 99.0 1.1E-09 2.3E-14 99.7 9.9 86 2-100 169-274 (786)
140 COG2812 DnaX DNA polymerase II 99.0 2E-10 4.4E-15 100.6 5.0 168 1-180 14-226 (515)
141 PRK12422 chromosomal replicati 99.0 2.4E-09 5.2E-14 93.3 11.6 63 38-100 142-214 (445)
142 KOG0736 Peroxisome assembly fa 99.0 3.9E-09 8.4E-14 94.9 12.9 131 34-165 428-609 (953)
143 PRK08116 hypothetical protein; 99.0 1.2E-09 2.5E-14 89.4 9.0 95 1-100 83-190 (268)
144 PTZ00112 origin recognition co 99.0 1.5E-08 3.2E-13 93.1 16.2 90 3-100 755-881 (1164)
145 TIGR01650 PD_CobS cobaltochela 99.0 1.6E-09 3.5E-14 90.1 9.2 64 37-100 64-146 (327)
146 PRK00411 cdc6 cell division co 99.0 3.2E-08 6.9E-13 84.9 16.1 62 3-73 30-96 (394)
147 PRK08181 transposase; Validate 99.0 1.2E-09 2.7E-14 89.1 6.6 64 37-100 106-179 (269)
148 KOG0735 AAA+-type ATPase [Post 99.0 7.2E-09 1.6E-13 92.6 11.8 124 37-160 431-615 (952)
149 COG1474 CDC6 Cdc6-related prot 99.0 4.8E-08 1E-12 83.1 16.4 88 4-100 18-135 (366)
150 PF07728 AAA_5: AAA domain (dy 99.0 4.5E-10 9.8E-15 82.6 3.5 62 39-100 1-77 (139)
151 COG1484 DnaC DNA replication p 99.0 3.3E-09 7.2E-14 86.0 8.7 68 36-103 104-182 (254)
152 cd00009 AAA The AAA+ (ATPases 98.9 5.3E-09 1.1E-13 76.1 8.5 64 37-100 19-96 (151)
153 TIGR02902 spore_lonB ATP-depen 98.9 9.7E-09 2.1E-13 91.5 11.5 59 1-72 63-131 (531)
154 smart00382 AAA ATPases associa 98.9 3.2E-09 7E-14 76.5 6.6 64 37-100 2-90 (148)
155 TIGR01817 nifA Nif-specific re 98.9 5.9E-08 1.3E-12 86.7 15.6 90 2-103 195-305 (534)
156 TIGR02903 spore_lon_C ATP-depe 98.9 4.2E-08 9E-13 88.8 14.0 60 1-73 152-221 (615)
157 PRK06921 hypothetical protein; 98.9 1.4E-08 3.1E-13 82.9 9.3 63 37-99 117-188 (266)
158 PF01695 IstB_IS21: IstB-like 98.9 1.9E-09 4.2E-14 82.9 3.8 65 36-100 46-120 (178)
159 COG0593 DnaA ATPase involved i 98.9 1.6E-08 3.5E-13 86.4 9.6 61 39-100 115-187 (408)
160 PHA02244 ATPase-like protein 98.8 1.2E-08 2.5E-13 86.2 8.4 64 37-100 119-192 (383)
161 PF12774 AAA_6: Hydrolytic ATP 98.8 1.6E-08 3.4E-13 80.9 8.5 65 36-100 31-96 (231)
162 PF01078 Mg_chelatase: Magnesi 98.8 9E-09 2E-13 80.3 6.9 47 1-62 1-47 (206)
163 PRK06835 DNA replication prote 98.8 2E-08 4.3E-13 84.3 8.9 63 38-100 184-258 (329)
164 PRK05564 DNA polymerase III su 98.8 1.6E-06 3.4E-11 72.5 20.2 90 1-102 2-107 (313)
165 PRK06526 transposase; Provisio 98.8 3.4E-09 7.3E-14 85.9 3.8 64 37-100 98-171 (254)
166 PRK11388 DNA-binding transcrip 98.8 1.9E-07 4.2E-12 85.1 15.6 90 2-102 324-430 (638)
167 COG0714 MoxR-like ATPases [Gen 98.8 1.1E-07 2.4E-12 80.0 12.7 64 37-100 43-124 (329)
168 TIGR02974 phageshock_pspF psp 98.8 2.7E-07 5.9E-12 77.6 14.8 86 6-103 2-108 (329)
169 COG0470 HolB ATPase involved i 98.8 1.5E-08 3.3E-13 84.4 7.1 65 39-103 26-124 (325)
170 PF00158 Sigma54_activat: Sigm 98.8 2.3E-08 5.1E-13 76.2 7.4 87 6-103 2-108 (168)
171 PF07726 AAA_3: ATPase family 98.8 4.9E-09 1.1E-13 75.7 3.3 69 39-107 1-84 (131)
172 TIGR02329 propionate_PrpR prop 98.8 1.4E-07 3.1E-12 83.8 13.2 90 1-102 210-321 (526)
173 PRK15424 propionate catabolism 98.8 2.2E-07 4.7E-12 82.7 14.2 90 2-103 218-337 (538)
174 PRK13407 bchI magnesium chelat 98.8 4.9E-08 1.1E-12 82.0 9.6 49 1-62 6-54 (334)
175 PRK11608 pspF phage shock prot 98.8 5E-07 1.1E-11 75.9 15.7 89 2-102 5-114 (326)
176 TIGR00390 hslU ATP-dependent p 98.7 1.8E-08 4E-13 86.2 6.5 70 4-73 13-83 (441)
177 KOG0745 Putative ATP-dependent 98.7 1.6E-08 3.6E-13 85.9 5.6 63 38-100 227-303 (564)
178 PRK15429 formate hydrogenlyase 98.7 3.5E-07 7.6E-12 84.0 14.6 87 2-101 375-483 (686)
179 PRK08118 topology modulation p 98.7 1.1E-07 2.4E-12 72.4 9.3 93 39-133 3-101 (167)
180 PRK09112 DNA polymerase III su 98.7 2.9E-06 6.2E-11 72.0 18.6 50 2-63 22-71 (351)
181 PRK07471 DNA polymerase III su 98.7 3E-06 6.6E-11 72.2 18.8 49 1-61 17-65 (365)
182 PRK10820 DNA-binding transcrip 98.7 4.3E-07 9.4E-12 80.9 14.2 90 1-102 202-312 (520)
183 CHL00081 chlI Mg-protoporyphyr 98.7 2.9E-07 6.3E-12 77.7 12.3 49 1-62 15-63 (350)
184 smart00763 AAA_PrkA PrkA AAA d 98.7 3.1E-08 6.8E-13 83.4 6.5 61 2-70 49-118 (361)
185 PRK05022 anaerobic nitric oxid 98.7 6.5E-07 1.4E-11 79.6 14.5 88 3-102 187-295 (509)
186 PHA00729 NTP-binding motif con 98.7 1.6E-07 3.5E-12 74.4 9.5 88 39-130 19-137 (226)
187 PRK05201 hslU ATP-dependent pr 98.7 3.4E-08 7.4E-13 84.6 6.0 70 4-73 16-86 (443)
188 PRK09183 transposase/IS protei 98.6 4.3E-08 9.4E-13 79.8 5.4 64 37-100 102-176 (259)
189 PRK08058 DNA polymerase III su 98.6 1.7E-06 3.6E-11 72.9 14.8 89 2-102 4-124 (329)
190 TIGR00678 holB DNA polymerase 98.6 5.2E-07 1.1E-11 69.8 10.7 66 37-102 14-110 (188)
191 COG2204 AtoC Response regulato 98.6 1.2E-06 2.7E-11 76.1 13.9 90 3-103 141-250 (464)
192 COG3829 RocR Transcriptional r 98.6 1.2E-06 2.6E-11 76.6 13.4 90 1-102 243-354 (560)
193 PF00910 RNA_helicase: RNA hel 98.6 3.1E-08 6.7E-13 69.9 2.7 61 40-100 1-61 (107)
194 COG0606 Predicted ATPase with 98.6 1.6E-07 3.5E-12 81.0 7.0 47 1-62 177-223 (490)
195 TIGR02030 BchI-ChlI magnesium 98.6 3.7E-07 8.1E-12 76.9 9.0 47 2-61 3-49 (337)
196 TIGR00602 rad24 checkpoint pro 98.6 6.3E-08 1.4E-12 87.4 4.4 59 1-67 82-140 (637)
197 PF13401 AAA_22: AAA domain; P 98.5 1.1E-07 2.4E-12 68.7 4.5 37 38-74 5-49 (131)
198 KOG1051 Chaperone HSP104 and r 98.5 4.9E-07 1.1E-11 83.7 9.4 92 3-100 562-672 (898)
199 PF06068 TIP49: TIP49 C-termin 98.5 4.3E-07 9.2E-12 76.5 8.0 76 3-86 24-106 (398)
200 PF13173 AAA_14: AAA domain 98.5 2.6E-07 5.6E-12 67.1 5.9 62 39-100 4-73 (128)
201 PRK07261 topology modulation p 98.5 7.6E-07 1.6E-11 68.0 8.7 91 40-133 3-101 (171)
202 PRK11331 5-methylcytosine-spec 98.5 4.7E-07 1E-11 78.4 7.5 26 37-62 194-219 (459)
203 PRK13531 regulatory ATPase Rav 98.5 6.1E-07 1.3E-11 78.3 8.3 27 37-63 39-65 (498)
204 COG1221 PspF Transcriptional r 98.5 2.1E-06 4.6E-11 73.4 11.3 88 2-100 77-185 (403)
205 PRK04132 replication factor C 98.5 1.4E-06 3E-11 81.0 10.9 64 40-103 567-645 (846)
206 PF13207 AAA_17: AAA domain; P 98.5 1.6E-07 3.4E-12 67.2 3.7 90 40-131 2-110 (121)
207 TIGR02442 Cob-chelat-sub cobal 98.4 1.5E-06 3.2E-11 79.2 10.3 47 2-61 3-49 (633)
208 TIGR03015 pepcterm_ATPase puta 98.4 1.6E-05 3.4E-10 64.7 15.1 23 40-62 46-68 (269)
209 PRK10923 glnG nitrogen regulat 98.4 1.5E-05 3.3E-10 70.0 15.9 65 37-102 161-246 (469)
210 PRK05707 DNA polymerase III su 98.4 1E-05 2.2E-10 68.0 14.1 66 37-102 22-120 (328)
211 PF13177 DNA_pol3_delta2: DNA 98.4 3.5E-06 7.6E-11 63.8 10.1 71 37-107 19-124 (162)
212 PF14532 Sigma54_activ_2: Sigm 98.4 3.8E-07 8.2E-12 67.1 4.5 79 7-102 2-83 (138)
213 PRK07399 DNA polymerase III su 98.4 2.1E-05 4.6E-10 65.8 15.1 49 1-61 2-50 (314)
214 PRK11361 acetoacetate metaboli 98.4 1.3E-05 2.8E-10 70.1 14.1 65 38-102 167-251 (457)
215 PRK15455 PrkA family serine pr 98.4 5.4E-07 1.2E-11 80.0 5.2 60 2-68 75-135 (644)
216 PF12775 AAA_7: P-loop contain 98.3 3E-06 6.5E-11 69.5 9.0 64 37-100 33-112 (272)
217 PF06309 Torsin: Torsin; Inte 98.3 6.3E-07 1.4E-11 64.6 4.3 53 3-61 25-77 (127)
218 KOG0741 AAA+-type ATPase [Post 98.3 1.7E-05 3.6E-10 69.5 13.7 63 38-100 539-610 (744)
219 PHA02624 large T antigen; Prov 98.3 3.2E-06 7E-11 75.4 9.3 62 33-98 427-488 (647)
220 COG1125 OpuBA ABC-type proline 98.3 6.9E-07 1.5E-11 71.6 4.4 114 23-160 11-130 (309)
221 KOG0990 Replication factor C, 98.3 1E-06 2.2E-11 72.5 5.4 70 38-107 63-153 (360)
222 PF03215 Rad17: Rad17 cell cyc 98.3 8.1E-07 1.8E-11 78.8 5.2 58 3-68 19-76 (519)
223 COG3604 FhlA Transcriptional r 98.3 1.5E-05 3.2E-10 69.3 12.3 91 2-103 222-332 (550)
224 COG1224 TIP49 DNA helicase TIP 98.3 1.3E-06 2.9E-11 72.9 5.7 39 35-73 63-103 (450)
225 PRK06217 hypothetical protein; 98.3 3.5E-06 7.5E-11 64.9 7.7 91 40-132 4-105 (183)
226 smart00350 MCM minichromosome 98.3 2.2E-06 4.9E-11 76.2 7.4 61 39-100 238-312 (509)
227 PRK00131 aroK shikimate kinase 98.3 1.1E-06 2.4E-11 66.5 4.4 34 36-69 3-36 (175)
228 TIGR01818 ntrC nitrogen regula 98.3 5.6E-05 1.2E-09 66.3 15.7 64 38-102 158-242 (463)
229 PF05621 TniB: Bacterial TniB 98.3 1.9E-05 4.1E-10 65.1 11.7 35 38-72 62-105 (302)
230 PRK08769 DNA polymerase III su 98.2 5.4E-05 1.2E-09 63.4 14.6 67 37-103 26-128 (319)
231 COG0464 SpoVK ATPases of the A 98.2 1.4E-05 3E-10 70.8 11.7 137 25-162 6-193 (494)
232 COG2884 FtsE Predicted ATPase 98.2 1.2E-06 2.7E-11 67.3 4.3 37 25-61 14-52 (223)
233 PRK07993 DNA polymerase III su 98.2 8.1E-05 1.8E-09 62.8 15.2 66 37-102 24-122 (334)
234 TIGR02915 PEP_resp_reg putativ 98.2 4.7E-05 1E-09 66.4 14.4 65 38-103 163-248 (445)
235 KOG1514 Origin recognition com 98.2 3.5E-05 7.5E-10 69.4 13.3 62 39-100 424-520 (767)
236 KOG2035 Replication factor C, 98.2 3.8E-05 8.3E-10 62.4 11.6 24 38-61 35-58 (351)
237 PF13671 AAA_33: AAA domain; P 98.2 1.2E-06 2.6E-11 64.3 2.7 28 40-67 2-29 (143)
238 cd02020 CMPK Cytidine monophos 98.2 1.7E-05 3.7E-10 58.3 8.9 30 40-69 2-31 (147)
239 COG5271 MDN1 AAA ATPase contai 98.1 1.7E-05 3.8E-10 77.2 10.4 61 37-100 1543-1623(4600)
240 COG1220 HslU ATP-dependent pro 98.1 7.4E-06 1.6E-10 68.2 7.0 70 4-73 16-86 (444)
241 PRK03839 putative kinase; Prov 98.1 2.4E-06 5.3E-11 65.5 3.8 30 40-69 3-32 (180)
242 TIGR03499 FlhF flagellar biosy 98.1 1.9E-05 4.1E-10 65.1 9.3 36 38-73 195-235 (282)
243 PRK06964 DNA polymerase III su 98.1 0.00011 2.4E-09 62.1 13.7 28 35-62 19-46 (342)
244 PRK08699 DNA polymerase III su 98.1 3.3E-05 7.1E-10 65.0 10.3 67 36-102 20-127 (325)
245 cd01120 RecA-like_NTPases RecA 98.1 1E-05 2.2E-10 60.1 6.5 32 40-71 2-36 (165)
246 cd00464 SK Shikimate kinase (S 98.1 3.6E-06 7.7E-11 62.6 4.0 30 40-69 2-31 (154)
247 PRK15115 response regulator Gl 98.1 0.00013 2.9E-09 63.6 14.4 64 38-102 158-242 (444)
248 PRK13947 shikimate kinase; Pro 98.1 3.9E-06 8.5E-11 63.6 4.2 32 39-70 3-34 (171)
249 COG0563 Adk Adenylate kinase a 98.1 5.3E-06 1.2E-10 63.8 4.8 25 40-64 3-27 (178)
250 PRK13949 shikimate kinase; Pro 98.1 3.9E-06 8.5E-11 64.0 4.0 31 39-69 3-33 (169)
251 PF13191 AAA_16: AAA ATPase do 98.1 2.1E-06 4.5E-11 65.6 2.3 59 5-73 2-63 (185)
252 PRK00625 shikimate kinase; Pro 98.1 4.2E-06 9.1E-11 64.1 3.9 30 40-69 3-32 (173)
253 TIGR01618 phage_P_loop phage n 98.1 5.8E-06 1.3E-10 65.6 4.7 62 37-100 12-93 (220)
254 PRK06871 DNA polymerase III su 98.0 7.8E-05 1.7E-09 62.6 11.6 66 37-102 24-121 (325)
255 TIGR01359 UMP_CMP_kin_fam UMP- 98.0 4.6E-06 1E-10 63.9 4.0 29 40-68 2-30 (183)
256 cd02021 GntK Gluconate kinase 98.0 5.6E-06 1.2E-10 61.5 3.9 28 40-67 2-29 (150)
257 COG1120 FepC ABC-type cobalami 98.0 7.7E-06 1.7E-10 66.2 4.8 97 28-128 17-119 (258)
258 KOG0478 DNA replication licens 98.0 1.6E-05 3.5E-10 71.2 7.1 95 4-100 430-538 (804)
259 PRK14532 adenylate kinase; Pro 98.0 6.1E-06 1.3E-10 63.7 4.0 29 40-68 3-31 (188)
260 COG3839 MalK ABC-type sugar tr 98.0 9.3E-06 2E-10 68.1 5.2 31 31-61 21-53 (338)
261 PRK14722 flhF flagellar biosyn 98.0 2.4E-05 5.2E-10 66.7 7.7 64 37-100 137-227 (374)
262 PHA02774 E1; Provisional 98.0 1.5E-05 3.3E-10 70.9 6.7 58 33-97 430-488 (613)
263 TIGR01313 therm_gnt_kin carboh 98.0 5.9E-06 1.3E-10 62.2 3.7 28 40-67 1-28 (163)
264 PRK12723 flagellar biosynthesi 98.0 4.4E-05 9.6E-10 65.5 9.4 64 37-100 174-266 (388)
265 PRK10365 transcriptional regul 98.0 0.00023 5E-09 61.9 14.0 64 38-102 163-247 (441)
266 PLN03210 Resistant to P. syrin 98.0 0.00017 3.7E-09 70.2 14.2 27 37-63 207-233 (1153)
267 TIGR02031 BchD-ChlD magnesium 98.0 2.9E-05 6.3E-10 70.2 8.2 63 38-100 17-96 (589)
268 PRK08154 anaerobic benzoate ca 98.0 2.2E-05 4.8E-10 65.5 6.8 35 35-69 131-165 (309)
269 COG3842 PotA ABC-type spermidi 98.0 1.4E-05 3.1E-10 67.4 5.5 33 27-59 19-53 (352)
270 PRK05800 cobU adenosylcobinami 98.0 2.4E-05 5.1E-10 59.8 6.3 33 40-72 4-36 (170)
271 COG1117 PstB ABC-type phosphat 98.0 1E-05 2.2E-10 63.4 4.2 44 18-61 12-57 (253)
272 cd01428 ADK Adenylate kinase ( 98.0 8.8E-06 1.9E-10 62.8 4.0 29 40-68 2-30 (194)
273 KOG2170 ATPase of the AAA+ sup 97.9 1.3E-05 2.8E-10 65.6 5.0 91 4-100 83-190 (344)
274 TIGR00368 Mg chelatase-related 97.9 9.9E-06 2.1E-10 71.7 4.6 25 37-61 211-235 (499)
275 PRK14530 adenylate kinase; Pro 97.9 1.1E-05 2.3E-10 63.8 4.3 29 39-67 5-33 (215)
276 PRK13808 adenylate kinase; Pro 97.9 0.00028 6E-09 59.3 12.9 90 40-131 3-127 (333)
277 PRK06762 hypothetical protein; 97.9 1.3E-05 2.9E-10 60.5 4.7 33 38-70 3-35 (166)
278 PF03969 AFG1_ATPase: AFG1-lik 97.9 1.3E-05 2.7E-10 68.3 4.9 67 34-100 59-139 (362)
279 PRK06090 DNA polymerase III su 97.9 0.00056 1.2E-08 57.3 14.6 66 37-102 25-122 (319)
280 PRK13948 shikimate kinase; Pro 97.9 1.5E-05 3.2E-10 61.6 4.7 33 37-69 10-42 (182)
281 PRK05057 aroK shikimate kinase 97.9 1.3E-05 2.8E-10 61.2 4.3 33 38-70 5-37 (172)
282 cd00227 CPT Chloramphenicol (C 97.9 9.5E-06 2.1E-10 62.0 3.6 32 38-69 3-34 (175)
283 COG0703 AroK Shikimate kinase 97.9 1E-05 2.2E-10 61.5 3.5 32 38-69 3-34 (172)
284 KOG2227 Pre-initiation complex 97.9 0.00076 1.6E-08 58.5 15.2 88 4-100 151-268 (529)
285 COG1102 Cmk Cytidylate kinase 97.9 1.1E-05 2.3E-10 60.5 3.5 28 40-67 3-30 (179)
286 PRK14531 adenylate kinase; Pro 97.9 1.4E-05 3.1E-10 61.5 4.4 30 39-68 4-33 (183)
287 PF05729 NACHT: NACHT domain 97.9 3.3E-05 7.1E-10 57.6 6.2 22 40-61 3-24 (166)
288 TIGR01360 aden_kin_iso1 adenyl 97.9 1.3E-05 2.9E-10 61.4 4.0 29 40-68 6-34 (188)
289 PRK14737 gmk guanylate kinase; 97.9 0.00011 2.4E-09 56.8 9.0 26 37-62 4-29 (186)
290 PRK06547 hypothetical protein; 97.9 2.7E-05 5.7E-10 59.6 5.3 33 37-69 15-47 (172)
291 PF13604 AAA_30: AAA domain; P 97.9 5.7E-05 1.2E-09 58.9 7.3 65 38-103 19-108 (196)
292 KOG0480 DNA replication licens 97.9 3.6E-05 7.8E-10 68.6 6.7 97 2-100 344-454 (764)
293 cd03283 ABC_MutS-like MutS-lik 97.9 5.5E-05 1.2E-09 59.2 7.2 70 30-99 18-116 (199)
294 PRK13946 shikimate kinase; Pro 97.9 1.6E-05 3.4E-10 61.4 4.0 34 37-70 10-43 (184)
295 PTZ00301 uridine kinase; Provi 97.9 0.00045 9.7E-09 54.5 12.3 22 40-61 6-27 (210)
296 PTZ00088 adenylate kinase 1; P 97.9 1.9E-05 4.2E-10 63.1 4.6 91 39-131 8-130 (229)
297 PRK03731 aroL shikimate kinase 97.9 1.8E-05 3.9E-10 60.1 4.1 31 39-69 4-34 (171)
298 PF13245 AAA_19: Part of AAA d 97.9 3.1E-05 6.6E-10 51.1 4.6 32 40-71 13-51 (76)
299 PF00437 T2SE: Type II/IV secr 97.8 2.3E-05 5E-10 64.0 5.0 28 37-64 127-154 (270)
300 PRK06696 uridine kinase; Valid 97.8 6.7E-05 1.5E-09 59.6 7.3 37 38-74 23-62 (223)
301 COG1241 MCM2 Predicted ATPase 97.8 1.5E-05 3.3E-10 72.3 3.8 95 4-100 287-395 (682)
302 PRK02496 adk adenylate kinase; 97.8 1.7E-05 3.7E-10 61.0 3.6 29 40-68 4-32 (184)
303 cd02019 NK Nucleoside/nucleoti 97.8 3.5E-05 7.5E-10 49.8 4.5 22 40-61 2-23 (69)
304 PRK14528 adenylate kinase; Pro 97.8 1.9E-05 4.2E-10 61.0 3.9 92 40-133 4-130 (186)
305 cd01128 rho_factor Transcripti 97.8 7.4E-05 1.6E-09 60.5 7.3 25 39-63 18-42 (249)
306 TIGR02688 conserved hypothetic 97.8 1.9E-05 4E-10 68.0 4.0 60 37-100 209-272 (449)
307 TIGR01351 adk adenylate kinase 97.8 2E-05 4.4E-10 62.0 3.9 29 40-68 2-30 (210)
308 PF13238 AAA_18: AAA domain; P 97.8 1.6E-05 3.5E-10 56.9 2.9 22 40-61 1-22 (129)
309 PF00931 NB-ARC: NB-ARC domain 97.8 0.00022 4.8E-09 58.3 10.0 99 37-135 19-172 (287)
310 KOG1942 DNA helicase, TBP-inte 97.8 3.5E-05 7.6E-10 63.2 5.1 33 37-69 64-96 (456)
311 cd03222 ABC_RNaseL_inhibitor T 97.8 6.7E-05 1.5E-09 57.6 6.4 28 35-62 23-50 (177)
312 COG1126 GlnQ ABC-type polar am 97.8 3.3E-06 7.2E-11 66.2 -0.8 36 26-61 15-52 (240)
313 PTZ00111 DNA replication licen 97.8 6.2E-05 1.3E-09 70.2 7.3 28 37-64 492-519 (915)
314 PRK00279 adk adenylate kinase; 97.8 2.4E-05 5.2E-10 61.8 4.0 29 40-68 3-31 (215)
315 PRK14527 adenylate kinase; Pro 97.8 2.4E-05 5.1E-10 60.7 3.8 31 37-67 6-36 (191)
316 PRK10078 ribose 1,5-bisphospho 97.8 2.7E-05 5.9E-10 60.1 4.1 29 39-67 4-32 (186)
317 smart00072 GuKc Guanylate kina 97.8 0.00012 2.6E-09 56.4 7.7 25 38-62 3-27 (184)
318 TIGR00764 lon_rel lon-related 97.8 8.1E-05 1.8E-09 67.6 7.7 27 38-64 38-64 (608)
319 COG4650 RtcR Sigma54-dependent 97.8 6.3E-05 1.4E-09 61.9 6.2 67 34-100 205-294 (531)
320 COG4088 Predicted nucleotide k 97.8 0.00011 2.3E-09 57.5 6.9 23 40-62 4-26 (261)
321 TIGR02237 recomb_radB DNA repa 97.8 9.9E-05 2.2E-09 57.8 7.0 40 33-72 8-50 (209)
322 PF08298 AAA_PrkA: PrkA AAA do 97.8 5.3E-05 1.2E-09 63.7 5.6 61 4-71 62-123 (358)
323 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.8 8.9E-05 1.9E-09 54.9 6.3 27 37-63 26-52 (144)
324 PRK00771 signal recognition pa 97.7 0.00018 4E-09 62.7 9.0 37 37-73 95-134 (437)
325 PRK08233 hypothetical protein; 97.7 3.9E-05 8.5E-10 58.5 4.3 30 40-69 6-36 (182)
326 cd00544 CobU Adenosylcobinamid 97.7 0.00016 3.6E-09 55.1 7.7 33 40-72 2-34 (169)
327 cd00267 ABC_ATPase ABC (ATP-bi 97.7 8.2E-05 1.8E-09 55.7 5.9 27 37-63 25-51 (157)
328 COG1618 Predicted nucleotide k 97.7 0.00011 2.4E-09 55.1 6.4 24 38-61 6-29 (179)
329 PF13086 AAA_11: AAA domain; P 97.7 3.5E-05 7.7E-10 60.6 4.0 22 40-61 20-41 (236)
330 KOG3347 Predicted nucleotide k 97.7 3.3E-05 7.2E-10 57.1 3.5 31 38-68 8-38 (176)
331 TIGR00150 HI0065_YjeE ATPase, 97.7 4.7E-05 1E-09 55.7 4.2 27 37-63 22-48 (133)
332 KOG1970 Checkpoint RAD17-RFC c 97.7 3.6E-05 7.8E-10 67.7 4.2 32 38-69 111-142 (634)
333 PLN02200 adenylate kinase fami 97.7 4.6E-05 1E-09 61.1 4.5 29 39-67 45-73 (234)
334 COG0529 CysC Adenylylsulfate k 97.7 0.00013 2.9E-09 55.5 6.6 37 38-74 24-63 (197)
335 cd02027 APSK Adenosine 5'-phos 97.7 4.9E-05 1.1E-09 56.7 4.3 31 40-70 2-35 (149)
336 PRK04040 adenylate kinase; Pro 97.7 4.7E-05 1E-09 59.1 4.3 35 38-72 3-37 (188)
337 COG3854 SpoIIIAA ncharacterize 97.7 0.00016 3.5E-09 57.5 7.2 34 39-72 139-180 (308)
338 COG1136 SalX ABC-type antimicr 97.7 0.00011 2.4E-09 58.3 6.4 32 30-61 22-55 (226)
339 PF00406 ADK: Adenylate kinase 97.7 2.9E-05 6.3E-10 57.8 2.9 26 42-67 1-26 (151)
340 PRK05703 flhF flagellar biosyn 97.7 0.00035 7.5E-09 60.9 9.8 63 38-100 222-311 (424)
341 COG1239 ChlI Mg-chelatase subu 97.7 0.00071 1.5E-08 58.0 11.2 27 37-63 38-64 (423)
342 PRK01184 hypothetical protein; 97.7 4.6E-05 9.9E-10 58.6 3.8 28 40-68 4-31 (184)
343 cd01129 PulE-GspE PulE/GspE Th 97.7 0.00032 6.9E-09 57.3 8.8 24 39-62 82-105 (264)
344 PRK09376 rho transcription ter 97.7 0.00014 3E-09 62.3 6.8 23 40-62 172-194 (416)
345 KOG1968 Replication factor C, 97.7 8.9E-05 1.9E-09 69.3 6.1 61 40-100 360-440 (871)
346 PHA02530 pseT polynucleotide k 97.7 4.8E-05 1.1E-09 62.9 4.0 29 39-67 4-33 (300)
347 PRK14526 adenylate kinase; Pro 97.7 5.3E-05 1.2E-09 59.8 4.0 28 40-67 3-30 (211)
348 TIGR02173 cyt_kin_arch cytidyl 97.6 5.3E-05 1.2E-09 57.2 3.9 29 40-68 3-31 (171)
349 cd01130 VirB11-like_ATPase Typ 97.6 4.2E-05 9.2E-10 59.1 3.2 26 37-62 25-50 (186)
350 COG2804 PulE Type II secretory 97.6 0.0025 5.5E-08 55.9 14.4 28 37-64 257-285 (500)
351 COG1116 TauB ABC-type nitrate/ 97.6 3.5E-05 7.6E-10 61.6 2.7 37 28-64 18-56 (248)
352 PF01745 IPT: Isopentenyl tran 97.6 6.1E-05 1.3E-09 59.1 3.9 31 40-70 4-34 (233)
353 PF13521 AAA_28: AAA domain; P 97.6 5.1E-05 1.1E-09 57.2 3.5 26 40-66 2-27 (163)
354 cd01394 radB RadB. The archaea 97.6 0.00017 3.6E-09 56.9 6.5 39 33-71 15-56 (218)
355 PRK04182 cytidylate kinase; Pr 97.6 6.2E-05 1.3E-09 57.2 3.9 29 40-68 3-31 (180)
356 COG0396 sufC Cysteine desulfur 97.6 0.00023 5.1E-09 56.4 7.1 39 27-65 18-58 (251)
357 cd01121 Sms Sms (bacterial rad 97.6 0.00014 3E-09 62.2 6.3 38 33-70 78-118 (372)
358 PRK13765 ATP-dependent proteas 97.6 8.5E-05 1.8E-09 67.6 5.2 47 2-63 30-76 (637)
359 PRK05480 uridine/cytidine kina 97.6 9.2E-05 2E-09 58.1 4.8 34 38-71 7-41 (209)
360 PRK11823 DNA repair protein Ra 97.6 0.00015 3.3E-09 63.5 6.6 39 33-71 76-117 (446)
361 KOG0481 DNA replication licens 97.6 0.00013 2.8E-09 63.9 6.0 95 4-100 332-440 (729)
362 cd03281 ABC_MSH5_euk MutS5 hom 97.6 0.00014 3E-09 57.5 5.8 22 38-59 30-51 (213)
363 COG1855 ATPase (PilT family) [ 97.6 7.5E-05 1.6E-09 64.4 4.5 25 37-61 263-287 (604)
364 TIGR02322 phosphon_PhnN phosph 97.6 5.5E-05 1.2E-09 57.8 3.3 24 40-63 4-27 (179)
365 cd02023 UMPK Uridine monophosp 97.6 9.2E-05 2E-09 57.6 4.7 31 40-70 2-33 (198)
366 PRK11889 flhF flagellar biosyn 97.6 0.00054 1.2E-08 58.8 9.5 64 37-100 241-332 (436)
367 TIGR03574 selen_PSTK L-seryl-t 97.6 7.4E-05 1.6E-09 60.3 4.2 32 40-71 2-36 (249)
368 COG1936 Predicted nucleotide k 97.6 5.2E-05 1.1E-09 57.5 3.0 29 40-69 3-31 (180)
369 PF01583 APS_kinase: Adenylyls 97.6 7.7E-05 1.7E-09 56.0 3.9 36 39-74 4-42 (156)
370 COG4555 NatA ABC-type Na+ tran 97.6 0.00026 5.7E-09 55.2 6.8 37 27-63 16-54 (245)
371 PRK04296 thymidine kinase; Pro 97.6 0.00035 7.6E-09 54.2 7.7 30 40-69 5-37 (190)
372 TIGR00235 udk uridine kinase. 97.6 8.9E-05 1.9E-09 58.2 4.4 24 40-63 9-32 (207)
373 cd03243 ABC_MutS_homologs The 97.6 0.00025 5.5E-09 55.4 6.9 23 37-59 29-51 (202)
374 PRK05541 adenylylsulfate kinas 97.6 0.00011 2.4E-09 56.0 4.7 34 37-70 7-43 (176)
375 PF06414 Zeta_toxin: Zeta toxi 97.6 9E-05 1.9E-09 57.8 4.2 39 36-74 14-53 (199)
376 TIGR00767 rho transcription te 97.6 0.00018 3.8E-09 61.8 6.2 23 40-62 171-193 (415)
377 PRK14529 adenylate kinase; Pro 97.6 5.4E-05 1.2E-09 60.2 2.9 27 40-66 3-29 (223)
378 KOG3354 Gluconate kinase [Carb 97.6 0.00015 3.2E-09 54.1 4.9 46 38-85 13-58 (191)
379 PRK09361 radB DNA repair and r 97.6 0.00014 3.1E-09 57.7 5.2 39 33-71 19-60 (225)
380 PF13479 AAA_24: AAA domain 97.5 6.2E-05 1.4E-09 59.5 3.0 57 39-100 5-80 (213)
381 cd02025 PanK Pantothenate kina 97.5 0.00012 2.5E-09 58.2 4.6 34 40-73 2-40 (220)
382 PF13555 AAA_29: P-loop contai 97.5 9.8E-05 2.1E-09 46.6 3.3 23 39-61 25-47 (62)
383 cd01124 KaiC KaiC is a circadi 97.5 0.00013 2.8E-09 55.9 4.6 32 40-71 2-36 (187)
384 PRK00889 adenylylsulfate kinas 97.5 0.00013 2.9E-09 55.6 4.7 34 38-71 5-41 (175)
385 cd02028 UMPK_like Uridine mono 97.5 0.00011 2.3E-09 56.5 4.2 34 40-73 2-38 (179)
386 PRK06067 flagellar accessory p 97.5 0.00016 3.5E-09 57.7 5.4 40 33-72 21-63 (234)
387 COG1121 ZnuC ABC-type Mn/Zn tr 97.5 7.3E-05 1.6E-09 60.3 3.3 38 28-65 19-58 (254)
388 PRK09825 idnK D-gluconate kina 97.5 0.00019 4.1E-09 55.1 5.4 26 39-64 5-30 (176)
389 PF00485 PRK: Phosphoribulokin 97.5 7.1E-05 1.5E-09 58.2 3.0 23 40-62 2-24 (194)
390 PF00448 SRP54: SRP54-type pro 97.5 0.00015 3.2E-09 56.7 4.7 36 38-73 2-40 (196)
391 COG1131 CcmA ABC-type multidru 97.5 0.00078 1.7E-08 55.9 9.3 40 28-67 20-61 (293)
392 PF06745 KaiC: KaiC; InterPro 97.5 0.00013 2.9E-09 57.9 4.5 40 33-72 15-58 (226)
393 PRK12339 2-phosphoglycerate ki 97.5 0.00012 2.5E-09 57.3 4.1 28 38-65 4-31 (197)
394 TIGR03878 thermo_KaiC_2 KaiC d 97.5 0.00014 3.1E-09 59.2 4.7 39 33-71 32-73 (259)
395 cd00071 GMPK Guanosine monopho 97.5 0.00011 2.4E-09 54.0 3.6 25 40-64 2-26 (137)
396 TIGR00064 ftsY signal recognit 97.5 0.00036 7.8E-09 57.2 7.0 37 37-73 72-111 (272)
397 COG0467 RAD55 RecA-superfamily 97.5 0.00018 3.9E-09 58.4 5.3 40 33-72 19-61 (260)
398 PLN02674 adenylate kinase 97.5 0.00013 2.8E-09 58.8 4.3 30 38-67 32-61 (244)
399 PRK10416 signal recognition pa 97.5 0.00023 5E-09 59.6 5.9 35 38-72 115-152 (318)
400 PRK07276 DNA polymerase III su 97.5 0.0067 1.4E-07 50.2 14.3 64 37-102 24-118 (290)
401 PLN02165 adenylate isopentenyl 97.5 0.00013 2.7E-09 61.3 4.2 31 39-69 45-75 (334)
402 PRK05917 DNA polymerase III su 97.5 0.00068 1.5E-08 56.0 8.4 67 37-103 19-110 (290)
403 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00041 8.9E-09 55.2 7.0 40 33-72 15-63 (235)
404 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.0002 4.3E-09 57.5 5.2 40 33-72 17-59 (237)
405 PRK12608 transcription termina 97.5 0.00036 7.8E-09 59.4 6.9 23 40-62 136-158 (380)
406 cd02022 DPCK Dephospho-coenzym 97.5 0.00013 2.9E-09 55.9 4.0 29 40-69 2-30 (179)
407 PLN02199 shikimate kinase 97.5 0.00014 3E-09 60.0 4.3 33 37-69 102-134 (303)
408 PF08433 KTI12: Chromatin asso 97.5 0.00023 5.1E-09 58.3 5.6 61 40-100 4-82 (270)
409 PRK04328 hypothetical protein; 97.5 0.00067 1.5E-08 54.9 8.2 40 33-72 19-61 (249)
410 PF00005 ABC_tran: ABC transpo 97.5 5.6E-05 1.2E-09 55.0 1.6 29 35-63 9-37 (137)
411 KOG0477 DNA replication licens 97.5 8.1E-05 1.8E-09 66.4 2.8 62 39-100 484-558 (854)
412 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.4 0.00014 2.9E-09 57.4 3.8 36 29-64 20-57 (218)
413 TIGR03263 guanyl_kin guanylate 97.4 0.0001 2.2E-09 56.3 3.0 24 40-63 4-27 (180)
414 PRK00300 gmk guanylate kinase; 97.4 0.00014 3E-09 56.7 3.8 26 37-62 5-30 (205)
415 TIGR02782 TrbB_P P-type conjug 97.4 0.00011 2.5E-09 61.0 3.4 25 37-61 132-156 (299)
416 cd03280 ABC_MutS2 MutS2 homolo 97.4 0.00032 6.9E-09 54.8 5.7 20 39-58 30-49 (200)
417 cd03287 ABC_MSH3_euk MutS3 hom 97.4 0.00061 1.3E-08 54.2 7.4 63 38-100 32-122 (222)
418 PRK14730 coaE dephospho-CoA ki 97.4 0.00015 3.3E-09 56.5 3.8 30 40-69 4-33 (195)
419 PRK05973 replicative DNA helic 97.4 0.00024 5.3E-09 57.0 5.0 39 33-71 60-101 (237)
420 COG4133 CcmA ABC-type transpor 97.4 6.3E-05 1.4E-09 57.8 1.6 42 26-67 15-58 (209)
421 PLN02459 probable adenylate ki 97.4 0.0002 4.4E-09 58.1 4.6 91 39-131 31-153 (261)
422 TIGR02868 CydC thiol reductant 97.4 0.00025 5.4E-09 63.4 5.6 37 28-64 350-388 (529)
423 COG1123 ATPase components of v 97.4 0.00027 5.8E-09 62.7 5.6 36 28-63 306-343 (539)
424 cd02024 NRK1 Nicotinamide ribo 97.4 0.00016 3.5E-09 56.0 3.8 23 40-62 2-24 (187)
425 PRK11432 fbpC ferric transport 97.4 0.00045 9.7E-09 58.7 6.8 27 38-64 33-59 (351)
426 smart00534 MUTSac ATPase domai 97.4 0.00067 1.5E-08 52.3 7.2 20 40-59 2-21 (185)
427 PRK07667 uridine kinase; Provi 97.4 0.00024 5.2E-09 55.2 4.7 34 39-72 19-55 (193)
428 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00012 2.6E-09 51.4 2.7 22 37-58 15-36 (107)
429 cd04159 Arl10_like Arl10-like 97.4 0.00048 1.1E-08 50.4 6.1 21 40-60 2-22 (159)
430 COG1373 Predicted ATPase (AAA+ 97.4 0.00087 1.9E-08 58.0 8.5 62 39-100 39-106 (398)
431 PF03266 NTPase_1: NTPase; In 97.4 0.00018 3.8E-09 54.8 3.7 22 40-61 2-23 (168)
432 PRK12727 flagellar biosynthesi 97.4 0.00077 1.7E-08 59.9 8.2 64 37-100 350-440 (559)
433 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.00029 6.2E-09 56.0 5.1 38 33-70 16-56 (229)
434 cd03267 ABC_NatA_like Similar 97.4 9.1E-05 2E-09 59.3 2.2 39 25-63 33-73 (236)
435 TIGR03265 PhnT2 putative 2-ami 97.4 0.00058 1.3E-08 58.1 7.1 27 38-64 31-57 (353)
436 cd03115 SRP The signal recogni 97.4 0.00027 5.8E-09 53.7 4.6 34 40-73 3-39 (173)
437 TIGR02236 recomb_radA DNA repa 97.4 0.00062 1.3E-08 56.8 7.1 39 34-72 92-139 (310)
438 TIGR02012 tigrfam_recA protein 97.4 0.00028 6E-09 59.1 4.9 38 33-70 51-91 (321)
439 cd01131 PilT Pilus retraction 97.4 0.00015 3.3E-09 56.6 3.2 23 40-62 4-26 (198)
440 PRK11545 gntK gluconate kinase 97.4 0.00014 3E-09 55.1 2.9 27 43-69 1-27 (163)
441 cd03269 ABC_putative_ATPase Th 97.4 0.00021 4.5E-09 56.1 4.0 27 38-64 27-53 (210)
442 cd01393 recA_like RecA is a b 97.4 0.00063 1.4E-08 53.8 6.8 40 33-72 15-63 (226)
443 cd03292 ABC_FtsE_transporter F 97.4 0.00021 4.5E-09 56.2 3.9 27 37-63 27-53 (214)
444 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.4 7.8E-05 1.7E-09 59.3 1.5 48 16-63 25-74 (224)
445 PF02367 UPF0079: Uncharacteri 97.4 0.00017 3.7E-09 52.0 3.1 64 37-100 15-100 (123)
446 cd03294 ABC_Pro_Gly_Bertaine T 97.4 0.0001 2.2E-09 60.3 2.1 39 25-63 36-76 (269)
447 COG1124 DppF ABC-type dipeptid 97.4 0.00019 4.1E-09 57.3 3.6 41 28-68 22-64 (252)
448 cd03261 ABC_Org_Solvent_Resist 97.4 0.00021 4.5E-09 57.1 3.9 28 37-64 26-53 (235)
449 cd03258 ABC_MetN_methionine_tr 97.3 0.00019 4.2E-09 57.2 3.7 36 28-63 20-57 (233)
450 PF01443 Viral_helicase1: Vira 97.3 0.00029 6.2E-09 55.9 4.6 22 40-61 1-22 (234)
451 TIGR00017 cmk cytidylate kinas 97.3 0.00023 5E-09 56.5 4.0 29 39-67 4-32 (217)
452 cd04160 Arfrp1 Arfrp1 subfamil 97.3 0.00075 1.6E-08 50.4 6.6 22 40-61 2-23 (167)
453 PRK12338 hypothetical protein; 97.3 0.00024 5.1E-09 59.4 4.1 30 37-66 4-33 (319)
454 TIGR00960 3a0501s02 Type II (G 97.3 0.00023 4.9E-09 56.1 3.9 27 38-64 30-56 (216)
455 PRK03846 adenylylsulfate kinas 97.3 0.0003 6.6E-09 54.8 4.6 35 37-71 24-61 (198)
456 PRK13406 bchD magnesium chelat 97.3 0.0015 3.2E-08 59.1 9.5 63 38-100 26-105 (584)
457 PRK11650 ugpC glycerol-3-phosp 97.3 0.00054 1.2E-08 58.3 6.4 26 39-64 32-57 (356)
458 TIGR03608 L_ocin_972_ABC putat 97.3 0.00022 4.8E-09 55.6 3.8 27 37-63 24-50 (206)
459 COG1118 CysA ABC-type sulfate/ 97.3 0.00013 2.8E-09 60.1 2.5 36 28-63 17-54 (345)
460 PRK00091 miaA tRNA delta(2)-is 97.3 0.00023 5E-09 59.3 4.0 32 38-69 5-36 (307)
461 PRK08356 hypothetical protein; 97.3 0.00026 5.5E-09 55.1 4.0 27 40-67 8-34 (195)
462 cd03262 ABC_HisP_GlnQ_permease 97.3 0.00023 4.9E-09 55.9 3.7 27 37-63 26-52 (213)
463 PF09848 DUF2075: Uncharacteri 97.3 0.00047 1E-08 58.6 5.9 22 40-61 4-25 (352)
464 COG1127 Ttg2A ABC-type transpo 97.3 0.00018 3.9E-09 57.4 3.1 40 25-64 20-61 (263)
465 PRK08533 flagellar accessory p 97.3 0.00046 9.9E-09 55.2 5.4 38 33-70 20-60 (230)
466 TIGR02673 FtsE cell division A 97.3 0.00022 4.7E-09 56.1 3.5 35 29-63 18-54 (214)
467 TIGR01166 cbiO cobalt transpor 97.3 0.00026 5.6E-09 54.7 3.9 27 37-63 18-44 (190)
468 PRK14723 flhF flagellar biosyn 97.3 0.0012 2.6E-08 61.0 8.7 63 38-100 186-275 (767)
469 PF03029 ATP_bind_1: Conserved 97.3 0.00021 4.5E-09 57.5 3.4 29 42-70 1-32 (238)
470 PRK14974 cell division protein 97.3 0.00068 1.5E-08 57.2 6.6 35 37-71 140-177 (336)
471 cd03265 ABC_DrrA DrrA is the A 97.3 0.00027 6E-09 55.8 4.0 28 37-64 26-53 (220)
472 COG3638 ABC-type phosphate/pho 97.3 0.001 2.2E-08 53.0 7.1 41 28-68 19-61 (258)
473 cd03293 ABC_NrtD_SsuB_transpor 97.3 0.00024 5.3E-09 56.1 3.7 26 38-63 31-56 (220)
474 TIGR02315 ABC_phnC phosphonate 97.3 0.00023 5.1E-09 57.0 3.6 36 28-63 17-54 (243)
475 PRK14021 bifunctional shikimat 97.3 0.00028 6E-09 63.4 4.4 31 40-70 9-39 (542)
476 cd03226 ABC_cobalt_CbiO_domain 97.3 0.00024 5.2E-09 55.5 3.6 26 38-63 27-52 (205)
477 TIGR02211 LolD_lipo_ex lipopro 97.3 0.00026 5.5E-09 56.0 3.7 27 37-63 31-57 (221)
478 cd03225 ABC_cobalt_CbiO_domain 97.3 0.00025 5.4E-09 55.6 3.6 35 29-63 17-53 (211)
479 cd03301 ABC_MalK_N The N-termi 97.3 0.00028 6.1E-09 55.4 3.9 27 37-63 26-52 (213)
480 cd00879 Sar1 Sar1 subfamily. 97.3 0.0011 2.3E-08 50.9 7.1 31 29-59 10-41 (190)
481 TIGR03410 urea_trans_UrtE urea 97.3 0.00024 5.2E-09 56.5 3.5 27 37-63 26-52 (230)
482 PRK13537 nodulation ABC transp 97.3 0.00098 2.1E-08 55.6 7.3 36 29-64 23-60 (306)
483 cd03284 ABC_MutS1 MutS1 homolo 97.3 0.00088 1.9E-08 53.1 6.7 21 39-59 32-52 (216)
484 PF00625 Guanylate_kin: Guanyl 97.3 0.00049 1.1E-08 52.9 5.1 29 37-65 2-30 (183)
485 TIGR03258 PhnT 2-aminoethylpho 97.3 0.00086 1.9E-08 57.2 7.0 26 39-64 33-58 (362)
486 cd03259 ABC_Carb_Solutes_like 97.3 0.00027 5.8E-09 55.5 3.7 35 29-63 16-52 (213)
487 cd03296 ABC_CysA_sulfate_impor 97.3 0.00029 6.3E-09 56.4 3.9 27 37-63 28-54 (239)
488 cd03224 ABC_TM1139_LivF_branch 97.3 0.00025 5.4E-09 56.0 3.5 27 37-63 26-52 (222)
489 PF08477 Miro: Miro-like prote 97.3 0.00025 5.4E-09 50.1 3.2 23 40-62 2-24 (119)
490 PRK11124 artP arginine transpo 97.3 0.00028 6.1E-09 56.6 3.8 27 37-63 28-54 (242)
491 PF00493 MCM: MCM2/3/5 family 97.3 9.7E-05 2.1E-09 62.3 1.2 64 37-100 57-133 (331)
492 PRK13833 conjugal transfer pro 97.3 0.00024 5.2E-09 59.6 3.5 25 37-61 144-168 (323)
493 TIGR00174 miaA tRNA isopenteny 97.3 0.00033 7.2E-09 57.8 4.3 31 40-70 2-32 (287)
494 PRK09452 potA putrescine/sperm 97.3 0.00077 1.7E-08 57.8 6.6 25 39-63 42-66 (375)
495 cd01672 TMPK Thymidine monopho 97.3 0.00042 9E-09 53.3 4.6 30 40-69 3-35 (200)
496 cd03257 ABC_NikE_OppD_transpor 97.3 0.00025 5.4E-09 56.2 3.4 36 28-63 20-57 (228)
497 cd03263 ABC_subfamily_A The AB 97.3 0.00028 6.1E-09 55.7 3.7 36 28-63 17-54 (220)
498 COG2274 SunT ABC-type bacterio 97.3 0.00053 1.2E-08 63.2 5.9 37 28-64 488-526 (709)
499 PRK00081 coaE dephospho-CoA ki 97.3 0.00035 7.5E-09 54.4 4.1 30 39-69 4-33 (194)
500 cd03238 ABC_UvrA The excision 97.3 0.00013 2.9E-09 55.9 1.8 30 30-59 12-43 (176)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-34 Score=239.14 Aligned_cols=188 Identities=57% Similarity=0.956 Sum_probs=176.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|+.+.+.++.|+.|++++..|...+++|.+.|.++.+|+|||||||||||+++.|+|++++.+++.+++++.....+++
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr 278 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLR 278 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHhcCCCeEEEEecCCcc---------------------chh-------------------------------hhhhc
Q 041769 81 NMLIATKNKSILVVGDIDYL---------------------TLH-------------------------------ILLRS 108 (204)
Q Consensus 81 ~~~~~~~~~~il~iDeid~~---------------------~~~-------------------------------a~~r~ 108 (204)
+++...++.+||+|+|||+. |+| |++||
T Consensus 279 ~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRp 358 (457)
T KOG0743|consen 279 HLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRP 358 (457)
T ss_pred HHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCC
Confidence 99999999999999999997 222 99999
Q ss_pred cccceeEecCCCCHHHHHHHHHHhhCCC-CCCcHHHHHHHhhhCCCCHHHHHHHHhcCC-CHHHHHHhHHHHHHhhhhch
Q 041769 109 SCMDMHIHMSYCTPFRFKMLASNYFGIT-EHPLLTEIDELIEKANVTLADVVEQLMRNK-VPEIALRGLTDVFKIKQTEN 186 (204)
Q Consensus 109 ~R~~~~i~~~~p~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 186 (204)
||+|.+|.+++.+.++++.++.+|++.. .+.+.+++..+.+...+|||||++.+|.+. +.+.+++.+.+.++....+.
T Consensus 359 GRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~ 438 (457)
T KOG0743|consen 359 GRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKR 438 (457)
T ss_pred CcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999997 489999999999999999999999999887 89999999999999877655
Q ss_pred hh
Q 041769 187 DE 188 (204)
Q Consensus 187 ~~ 188 (204)
++
T Consensus 439 ~~ 440 (457)
T KOG0743|consen 439 NK 440 (457)
T ss_pred cc
Confidence 44
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-32 Score=225.72 Aligned_cols=164 Identities=21% Similarity=0.237 Sum_probs=139.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|++++|.+++++++.+.+...+.+++.|..+|+.+|+|+|||||||||||.||+|+|++.+.+|+.+..|.+.
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGE 228 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGE 228 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhcc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999998862
Q ss_pred ChHHHHHHHHhc--CCCeEEEEecCCcc---------------------------------------------chh-hhh
Q 041769 75 ENMELRNMLIAT--KNKSILVVGDIDYL---------------------------------------------TLH-ILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~--~~~~il~iDeid~~---------------------------------------------~~~-a~~ 106 (204)
+..-++++|..+ +.|+||||||||++ +++ |++
T Consensus 229 GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALL 308 (406)
T COG1222 229 GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALL 308 (406)
T ss_pred chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhc
Confidence 234556777766 48999999999999 111 999
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHHhc
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQLMR 164 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~~ 164 (204)
||||||+.|+||.|+...|..|+..|...-...-...+..++. ..++|+|+++.+|..
T Consensus 309 RPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictE 367 (406)
T COG1222 309 RPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTE 367 (406)
T ss_pred CCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHH
Confidence 9999999999999999999999998876543333233333333 257899999998853
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.8e-28 Score=209.04 Aligned_cols=163 Identities=19% Similarity=0.253 Sum_probs=140.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|++++|.+++|.++.+.+.-.+.+++.|.++|+.+++|||||||||||||++|+++|.+.+.+++.+...++.
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGe 511 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGE 511 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999877652
Q ss_pred ChHHHHHHHHhcC--CCeEEEEecCCccch-------------------------------------------hhhhhcc
Q 041769 75 ENMELRNMLIATK--NKSILVVGDIDYLTL-------------------------------------------HILLRSS 109 (204)
Q Consensus 75 ~~~~~~~~~~~~~--~~~il~iDeid~~~~-------------------------------------------~a~~r~~ 109 (204)
++..++++|.++. .|+||||||||++.- .|++|||
T Consensus 512 SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPG 591 (693)
T KOG0730|consen 512 SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPG 591 (693)
T ss_pred hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCc
Confidence 4577899999984 789999999999900 1999999
Q ss_pred ccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHHh
Q 041769 110 CMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQLM 163 (204)
Q Consensus 110 R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~ 163 (204)
|||..|+++.|+.+.|..|++.+.....-.-...+..+.. ..+||++|+.++|-
T Consensus 592 RlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 592 RLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred ccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHH
Confidence 9999999999999999999988876543322233444444 36899999999884
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-26 Score=197.17 Aligned_cols=161 Identities=20% Similarity=0.311 Sum_probs=136.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|++|-|-++.|+++ +.+..|+..++-|..+|-..|+|+||+||||||||.|||++|++.+.++++...+.+.
T Consensus 302 ~F~dVkG~DEAK~EL-eEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGv 380 (752)
T KOG0734|consen 302 TFEDVKGVDEAKQEL-EEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGV 380 (752)
T ss_pred ccccccChHHHHHHH-HHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcc
Confidence 589999999999998 5566688999999999999999999999999999999999999999999998888752
Q ss_pred ChHHHHHHHHhcC--CCeEEEEecCCcc--------------chh-----------------------------hhhhcc
Q 041769 75 ENMELRNMLIATK--NKSILVVGDIDYL--------------TLH-----------------------------ILLRSS 109 (204)
Q Consensus 75 ~~~~~~~~~~~~~--~~~il~iDeid~~--------------~~~-----------------------------a~~r~~ 109 (204)
+...++.+|.++. .||||||||+|.+ |++ |+.|||
T Consensus 381 GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPG 460 (752)
T KOG0734|consen 381 GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPG 460 (752)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCC
Confidence 4467888888874 7999999999999 221 999999
Q ss_pred ccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHH
Q 041769 110 CMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQL 162 (204)
Q Consensus 110 R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~ 162 (204)
|||++|.+|.|+..-|.+|+..|+......-.....-+.+ ..||+++|+.+++
T Consensus 461 RFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 461 RFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred ccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHH
Confidence 9999999999999999999999987653332223333444 3789999999977
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.3e-26 Score=196.66 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=135.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|++++|.+.+..++.+.+.. +.+++.|..+|+.+++|+|||||||||||+||+++|++++.+++.+++.++.
T Consensus 188 ~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGE 266 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGE 266 (802)
T ss_pred chhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcc
Confidence 488999999999999888887 7899999999999999999999999999999999999999999999987762
Q ss_pred ChHHHHHHHHhcC--CCeEEEEecCCccch----------------------------------------------h-hh
Q 041769 75 ENMELRNMLIATK--NKSILVVGDIDYLTL----------------------------------------------H-IL 105 (204)
Q Consensus 75 ~~~~~~~~~~~~~--~~~il~iDeid~~~~----------------------------------------------~-a~ 105 (204)
+...++++|..+. .|||+||||||.++. + ++
T Consensus 267 SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaL 346 (802)
T KOG0733|consen 267 SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPAL 346 (802)
T ss_pred cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHH
Confidence 3477899999985 799999999999911 1 88
Q ss_pred hhccccceeEecCCCCHHHHHHHHHHhhCCCC---CCcHHHHHHHhhhCCCCHHHHHHHH
Q 041769 106 LRSSCMDMHIHMSYCTPFRFKMLASNYFGITE---HPLLTEIDELIEKANVTLADVVEQL 162 (204)
Q Consensus 106 ~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~i~~~~ 162 (204)
.|.||||+.|.+..|+..+|..|++..+.... .....+++.+. .||.+||+..++
T Consensus 347 RRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lT--PGfVGADL~AL~ 404 (802)
T KOG0733|consen 347 RRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLT--PGFVGADLMALC 404 (802)
T ss_pred hccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcC--CCccchhHHHHH
Confidence 88899999999999999999998887665332 23334444444 688999999888
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.7e-26 Score=196.44 Aligned_cols=162 Identities=18% Similarity=0.236 Sum_probs=137.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|+++++..+++.++.-.+...+.+++.|..+|+..|.|+|||||||||||.+|+|+|++.|.+|+.+....+.
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE 588 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE 588 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999887763
Q ss_pred ChHHHHHHHHhcC--CCeEEEEecCCccch-------------------------------------------hhhhhcc
Q 041769 75 ENMELRNMLIATK--NKSILVVGDIDYLTL-------------------------------------------HILLRSS 109 (204)
Q Consensus 75 ~~~~~~~~~~~~~--~~~il~iDeid~~~~-------------------------------------------~a~~r~~ 109 (204)
+...++.+|..+. .||||||||+|.+.. .|++|||
T Consensus 589 SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPG 668 (802)
T KOG0733|consen 589 SERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPG 668 (802)
T ss_pred HHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCC
Confidence 3356788888874 799999999999910 1999999
Q ss_pred ccceeEecCCCCHHHHHHHHHHhhCCC-----CCCcHHHHHHHhhhCCCCHHHHHHHH
Q 041769 110 CMDMHIHMSYCTPFRFKMLASNYFGIT-----EHPLLTEIDELIEKANVTLADVVEQL 162 (204)
Q Consensus 110 R~~~~i~~~~p~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~i~~~~ 162 (204)
|||..+.+++|+..+|..|++.+.... .....++++...+-.+|++||+..++
T Consensus 669 RlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLv 726 (802)
T KOG0733|consen 669 RLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALV 726 (802)
T ss_pred ccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHH
Confidence 999999999999999999988777632 22223334433333589999999877
No 7
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-25 Score=177.23 Aligned_cols=163 Identities=21% Similarity=0.306 Sum_probs=133.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
++.+++|.+-+|+++.+.+...+.+.++|.++|+.+|+|+|+|||||||||.|++++|+.....++.+..+.+.
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylge 232 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 232 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999988752
Q ss_pred ChHHHHHHHHhc--CCCeEEEEecCCcc---------------------------------------------chh-hhh
Q 041769 75 ENMELRNMLIAT--KNKSILVVGDIDYL---------------------------------------------TLH-ILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~--~~~~il~iDeid~~---------------------------------------------~~~-a~~ 106 (204)
+...++.+|.-+ ..|+||||||+|.+ |++ +++
T Consensus 233 gprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpall 312 (408)
T KOG0727|consen 233 GPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALL 312 (408)
T ss_pred CcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhc
Confidence 345667777666 47899999999998 111 999
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHH-HhhhCCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDE-LIEKANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~i~~~~~ 163 (204)
||||+|++|+||.|+..+++.++..............+.+ +++.-.+++++|...|-
T Consensus 313 rpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicq 370 (408)
T KOG0727|consen 313 RPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQ 370 (408)
T ss_pred CCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHH
Confidence 9999999999999999998777665544332222223333 34446678889888774
No 8
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.1e-25 Score=194.04 Aligned_cols=160 Identities=21% Similarity=0.327 Sum_probs=132.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCc------c
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTF------K 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~------~ 74 (204)
+|+|++|.+++|..|++.++..+.++++|.. |...+.|+|||||||||||.+|+|+|-++..+++++...++ .
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGq 748 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQ 748 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcc
Confidence 5999999999999999999999999998774 77778899999999999999999999999999999988775 3
Q ss_pred ChHHHHHHHHhcC--CCeEEEEecCCccchh-----------------------------------------------hh
Q 041769 75 ENMELRNMLIATK--NKSILVVGDIDYLTLH-----------------------------------------------IL 105 (204)
Q Consensus 75 ~~~~~~~~~~~~~--~~~il~iDeid~~~~~-----------------------------------------------a~ 105 (204)
++.+++++|+++. .||||||||+|++..+ ++
T Consensus 749 SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpAL 828 (953)
T KOG0736|consen 749 SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPAL 828 (953)
T ss_pred hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhh
Confidence 5689999999984 8999999999999110 99
Q ss_pred hhccccceeEecCCCCHHHH-HHHHHH---hhCCCCCCcHHHHHHHhhhCCCCHHHHHHHH
Q 041769 106 LRSSCMDMHIHMSYCTPFRF-KMLASN---YFGITEHPLLTEIDELIEKANVTLADVVEQL 162 (204)
Q Consensus 106 ~r~~R~~~~i~~~~p~~~~~-~~i~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~ 162 (204)
+||||||.-++++.+...+- ..+++. -+.........+++..|. ..+|+||+..+|
T Consensus 829 LRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp-~~~TGADlYsLC 888 (953)
T KOG0736|consen 829 LRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCP-PNMTGADLYSLC 888 (953)
T ss_pred cCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCC-cCCchhHHHHHH
Confidence 99999999999999887664 333332 233334444455555555 468999999988
No 9
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-25 Score=175.98 Aligned_cols=163 Identities=20% Similarity=0.237 Sum_probs=133.6
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------C
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------E 75 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------~ 75 (204)
++-+.|.+.+.++|.+.+.....++++|+.+|+.+|.|++||||||||||.+|+++|.+..+.++.++.+.+. +
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igeg 225 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEG 225 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhh
Confidence 5678889999999999999999999999999999999999999999999999999999999999999988762 2
Q ss_pred hHHHHHHHHhc--CCCeEEEEecCCccch----------------------------------------------hhhhh
Q 041769 76 NMELRNMLIAT--KNKSILVVGDIDYLTL----------------------------------------------HILLR 107 (204)
Q Consensus 76 ~~~~~~~~~~~--~~~~il~iDeid~~~~----------------------------------------------~a~~r 107 (204)
...+++.|-.+ ..|+|||+||||++.. .|++|
T Consensus 226 srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allr 305 (404)
T KOG0728|consen 226 SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLR 305 (404)
T ss_pred HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcC
Confidence 34456666655 4799999999999900 19999
Q ss_pred ccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHHhc
Q 041769 108 SSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQLMR 164 (204)
Q Consensus 108 ~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~~ 164 (204)
|||+|++|+||.|+.+.|..|+..+...-+..-...+..+.+. .|-+++++..+|..
T Consensus 306 pgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 306 PGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred CCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 9999999999999999998888766544322222334444443 46789999998854
No 10
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-24 Score=194.74 Aligned_cols=162 Identities=22% Similarity=0.329 Sum_probs=136.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|.||.|.++.|++|.+.+ .|+++++.|.++|...|+|+||+||||||||.||+|+|++.|.|++.++.+++.
T Consensus 309 ~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~ 387 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGV 387 (774)
T ss_pred ccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhccc
Confidence 4899999999999996554 588999999999999999999999999999999999999999999999998862
Q ss_pred ChHHHHHHHHhcC--CCeEEEEecCCcc------------------chh-----------------------------hh
Q 041769 75 ENMELRNMLIATK--NKSILVVGDIDYL------------------TLH-----------------------------IL 105 (204)
Q Consensus 75 ~~~~~~~~~~~~~--~~~il~iDeid~~------------------~~~-----------------------------a~ 105 (204)
+.+.++.+|..+. .|+++||||||.+ |++ |+
T Consensus 388 ~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~al 467 (774)
T KOG0731|consen 388 GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPAL 467 (774)
T ss_pred chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHh
Confidence 3567788888874 7999999999998 111 99
Q ss_pred hhccccceeEecCCCCHHHHHHHHHHhhCCCCCC-cHHHHHHHhh-hCCCCHHHHHHHHh
Q 041769 106 LRSSCMDMHIHMSYCTPFRFKMLASNYFGITEHP-LLTEIDELIE-KANVTLADVVEQLM 163 (204)
Q Consensus 106 ~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~-~~~l~~~~i~~~~~ 163 (204)
+||||||++|.+..|+...|..|+..|....... ....+..+.. ..++++++|+++|.
T Consensus 468 lrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 468 LRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCN 527 (774)
T ss_pred cCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhh
Confidence 9999999999999999999999999887655332 2222332332 37899999999884
No 11
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.92 E-value=2.4e-24 Score=184.12 Aligned_cols=163 Identities=20% Similarity=0.307 Sum_probs=132.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|++++|.+.+++.+.+.+..++.+++.|..+|++.++|++||||||||||++++++|+.++.+++.+..+.+.
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge 222 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGE 222 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcch
Confidence 58999999999999999999999999999999999999999999999999999999999999999988766542
Q ss_pred ChHHHHHHHHhc--CCCeEEEEecCCccc---------------------------------------------h-hhhh
Q 041769 75 ENMELRNMLIAT--KNKSILVVGDIDYLT---------------------------------------------L-HILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~--~~~~il~iDeid~~~---------------------------------------------~-~a~~ 106 (204)
+...++.+|..+ ..|++|+|||+|.+. + .+++
T Consensus 223 ~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAll 302 (398)
T PTZ00454 223 GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALL 302 (398)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHc
Confidence 223456666555 478999999999750 0 0789
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~ 163 (204)
|+||||..|.|+.|+..+|..|+..+...........+..++. ..+++++|+..+|.
T Consensus 303 R~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 303 RPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred CCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999988776432222223333333 36899999999884
No 12
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.1e-25 Score=177.99 Aligned_cols=164 Identities=22% Similarity=0.269 Sum_probs=134.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|.++.|.+.+.++|.+.+...+.+++.|+..|+.+|.|+++||+||||||.||+|+|+.....|+.+-.+++.
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGd 262 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD 262 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhcc
Confidence 57899999999999999999999999999999999999999999999999999999999999888888777652
Q ss_pred ChHHHHHHHHhc--CCCeEEEEecCCcc---------------------------------------------chh-hhh
Q 041769 75 ENMELRNMLIAT--KNKSILVVGDIDYL---------------------------------------------TLH-ILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~--~~~~il~iDeid~~---------------------------------------------~~~-a~~ 106 (204)
+..-++++|..+ ..|+|+||||||.+ +++ |+.
T Consensus 263 GpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLi 342 (440)
T KOG0726|consen 263 GPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALI 342 (440)
T ss_pred chHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhc
Confidence 234456666666 47999999999999 111 999
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHh-hhCCCCHHHHHHHHhc
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELI-EKANVTLADVVEQLMR 164 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~i~~~~~~ 164 (204)
||||+|++|+|+.|+..+++.|+..+...-...-...+..++ ..-.+|+++|...|..
T Consensus 343 RPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictE 401 (440)
T KOG0726|consen 343 RPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTE 401 (440)
T ss_pred CCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHH
Confidence 999999999999999999988887666543222222333333 3467999999998853
No 13
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.91 E-value=1.6e-23 Score=179.11 Aligned_cols=161 Identities=22% Similarity=0.254 Sum_probs=132.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|++++|.+++++.+.+.+...+.+++.|..+|+..++|++||||||||||++|+++|+.++.+++.++.+.+.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~ 208 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGE 208 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999887753
Q ss_pred ChHHHHHHHHhc--CCCeEEEEecCCccc-----------------h-----------------------------hhhh
Q 041769 75 ENMELRNMLIAT--KNKSILVVGDIDYLT-----------------L-----------------------------HILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~--~~~~il~iDeid~~~-----------------~-----------------------------~a~~ 106 (204)
....++.+|..+ ..+++|||||+|.+. + .+++
T Consensus 209 ~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~all 288 (389)
T PRK03992 209 GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAIL 288 (389)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHc
Confidence 123455566654 368999999999860 0 0888
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCC---CcHHHHHHHhhhCCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEH---PLLTEIDELIEKANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~i~~~~~ 163 (204)
|||||+..|.++.|+..+|..|+..++..... .....+...+ .+++++++..+|.
T Consensus 289 RpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t--~g~sgadl~~l~~ 346 (389)
T PRK03992 289 RPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELT--EGASGADLKAICT 346 (389)
T ss_pred CCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHc--CCCCHHHHHHHHH
Confidence 99999999999999999999999988764322 2233343333 6899999999874
No 14
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.7e-23 Score=173.33 Aligned_cols=172 Identities=19% Similarity=0.315 Sum_probs=135.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
.|++|.|..+.|+-|.+.+...+--++.|..+-.|+ +|+|++||||||||.||+|+|-+++..|+.++.+.+.+
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGe 288 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGE 288 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccc
Confidence 489999999999999999999999999999776666 57999999999999999999999999999999887642
Q ss_pred hHHHHHHHHhc---CCCeEEEEecCCcc-----------------------------------------------chh-h
Q 041769 76 NMELRNMLIAT---KNKSILVVGDIDYL-----------------------------------------------TLH-I 104 (204)
Q Consensus 76 ~~~~~~~~~~~---~~~~il~iDeid~~-----------------------------------------------~~~-a 104 (204)
...+.+++... ..|+.|||||||.+ .++ |
T Consensus 289 SEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEA 368 (491)
T KOG0738|consen 289 SEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEA 368 (491)
T ss_pred hHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHH
Confidence 24455554444 37899999999999 111 7
Q ss_pred hhhccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHHhcCCCHHHHHHhHHHHHH
Q 041769 105 LLRSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQLMRNKVPEIALRGLTDVFK 180 (204)
Q Consensus 105 ~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~ 180 (204)
++| ||...|.+|.|+.+.|..++...+..........+..+.+. .|||++||.++| .+.++..+.+.+.
T Consensus 369 lrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvC-----reAsm~~mRR~i~ 438 (491)
T KOG0738|consen 369 LRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVC-----REASMMAMRRKIA 438 (491)
T ss_pred HHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHH-----HHHHHHHHHHHHh
Confidence 777 99999999999999999999888765433322334444443 789999999999 4555555544443
No 15
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.90 E-value=4.5e-23 Score=177.55 Aligned_cols=163 Identities=20% Similarity=0.267 Sum_probs=131.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|+++.|.+.+++.+.+.+...+.+++.|..+|+..+.|++||||||||||++|+++|+.++.+++.+..+.+..
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge 260 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGD 260 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcch
Confidence 578999999999999999999999999999999999999999999999999999999999999999888776531
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc---------------------------------------------h-hhhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT---------------------------------------------L-HILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~---------------------------------------------~-~a~~ 106 (204)
...++.+|..+ ..+++|||||+|.+. + .+++
T Consensus 261 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLl 340 (438)
T PTZ00361 261 GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALI 340 (438)
T ss_pred HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhc
Confidence 23355566554 368999999998760 0 0788
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHh-hhCCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELI-EKANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~i~~~~~ 163 (204)
|+|||+..|.|+.|+..++..|+..+...........+..++ ...+++++++..+|.
T Consensus 341 RpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 341 RPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred cCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999999999887543222122333333 336899999998874
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-23 Score=166.22 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=127.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCc-----cC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTF-----KE 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~-----~~ 75 (204)
+++++.|.+.+.+++.+.+.....+++-|..+|+.+|.|+|+|||||||||.+||+-|...+..+..+-...+ ..
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGd 248 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD 248 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcc
Confidence 4789999999999999999999999999999999999999999999999999999999998877766544332 12
Q ss_pred h-HHHHHHHHhc--CCCeEEEEecCCcc-----------------ch-----------------------------hhhh
Q 041769 76 N-MELRNMLIAT--KNKSILVVGDIDYL-----------------TL-----------------------------HILL 106 (204)
Q Consensus 76 ~-~~~~~~~~~~--~~~~il~iDeid~~-----------------~~-----------------------------~a~~ 106 (204)
. .-++..|.-+ ..|+||||||+|.+ |+ .+++
T Consensus 249 GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALl 328 (424)
T KOG0652|consen 249 GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALL 328 (424)
T ss_pred hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHh
Confidence 2 2334444444 47999999999998 00 0999
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHHhc
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQLMR 164 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~~ 164 (204)
|+||+|++|+||.|+...|..|++.+.............++.+. -+|.+++.+.+|+.
T Consensus 329 RSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVE 387 (424)
T KOG0652|consen 329 RSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVE 387 (424)
T ss_pred hcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehh
Confidence 99999999999999999998887776654433333334444432 46789998887753
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.90 E-value=9.8e-23 Score=186.83 Aligned_cols=162 Identities=20% Similarity=0.236 Sum_probs=134.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|++++|.+.+++.+.+.+...+..++.+..+|+..+.|+|||||||||||++|+++|.+++.+++.++.+++.
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGe 530 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGE 530 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCc
Confidence 48999999999999999999989999999999999999999999999999999999999999999999887652
Q ss_pred ChHHHHHHHHhc--CCCeEEEEecCCccc-------------------------------------------h-hhhhhc
Q 041769 75 ENMELRNMLIAT--KNKSILVVGDIDYLT-------------------------------------------L-HILLRS 108 (204)
Q Consensus 75 ~~~~~~~~~~~~--~~~~il~iDeid~~~-------------------------------------------~-~a~~r~ 108 (204)
+...++.+|..+ ..++||||||+|.+. + .+++||
T Consensus 531 se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRp 610 (733)
T TIGR01243 531 SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRP 610 (733)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCC
Confidence 235677888776 368999999999760 0 189999
Q ss_pred cccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHH
Q 041769 109 SCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQL 162 (204)
Q Consensus 109 ~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~ 162 (204)
||||..+.++.|+..+|..|+..+...........+..+... .+++++++..+|
T Consensus 611 gRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 611 GRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred CccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999877664432222233334432 589999999877
No 18
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.2e-22 Score=178.44 Aligned_cols=162 Identities=18% Similarity=0.236 Sum_probs=136.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
.|+++.|..++++.+.+.+....+.+..|...+++.+.|+|||||||||||.||.++|...+.+++++...++.
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGa 744 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGA 744 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcc
Confidence 48999999999999999999888899999999999999999999999999999999999999999999877652
Q ss_pred ChHHHHHHHHhcC--CCeEEEEecCCccch-------------------------------------------hhhhhcc
Q 041769 75 ENMELRNMLIATK--NKSILVVGDIDYLTL-------------------------------------------HILLRSS 109 (204)
Q Consensus 75 ~~~~~~~~~~~~~--~~~il~iDeid~~~~-------------------------------------------~a~~r~~ 109 (204)
++.+++.+|..+. .|||+||||+|++.. .|++|||
T Consensus 745 SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpG 824 (952)
T KOG0735|consen 745 SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPG 824 (952)
T ss_pred cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCC
Confidence 4578899998884 899999999999900 1999999
Q ss_pred ccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHH
Q 041769 110 CMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQL 162 (204)
Q Consensus 110 R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~ 162 (204)
|+|..+..+.|+..+|..|+..............+..+... .++++||++.+|
T Consensus 825 RlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll 878 (952)
T KOG0735|consen 825 RLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLL 878 (952)
T ss_pred ccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHH
Confidence 99999999999999998888766553333333334433332 588999999887
No 19
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.89 E-value=1.3e-22 Score=177.10 Aligned_cols=160 Identities=18% Similarity=0.189 Sum_probs=123.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|++|.|.+..|+.+.+....+. ......|++.++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGe 302 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGE 302 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccCh
Confidence 47889999888887766544332 234567889999999999999999999999999999999999987642
Q ss_pred ChHHHHHHHHhc--CCCeEEEEecCCcc-----------------------------------ch-------hhhhhccc
Q 041769 75 ENMELRNMLIAT--KNKSILVVGDIDYL-----------------------------------TL-------HILLRSSC 110 (204)
Q Consensus 75 ~~~~~~~~~~~~--~~~~il~iDeid~~-----------------------------------~~-------~a~~r~~R 110 (204)
+...++++|..+ ..|+||+|||+|.+ |. .+++|+||
T Consensus 303 se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GR 382 (489)
T CHL00195 303 SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGR 382 (489)
T ss_pred HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCc
Confidence 235677777654 47999999999976 00 08889999
Q ss_pred cceeEecCCCCHHHHHHHHHHhhCCCCCC--cHHHHHHHhhh-CCCCHHHHHHHHh
Q 041769 111 MDMHIHMSYCTPFRFKMLASNYFGITEHP--LLTEIDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 111 ~~~~i~~~~p~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~-~~l~~~~i~~~~~ 163 (204)
||..+.++.|+.++|..|+..++...... ....+..+... .||+++||.+++.
T Consensus 383 FD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 383 FDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 99999999999999999999888653211 12233444443 6999999998774
No 20
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.89 E-value=2.7e-22 Score=176.68 Aligned_cols=181 Identities=18% Similarity=0.276 Sum_probs=139.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|++++|.++++.++.+.+. ++.++..|...|...++|+|||||||||||++++++|++++.+++.++.+.+.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~ 131 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV 131 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcc
Confidence 58999999999999987555 57788889999999999999999999999999999999999999999877642
Q ss_pred ChHHHHHHHHhc--CCCeEEEEecCCccch----------------------------------------------hhhh
Q 041769 75 ENMELRNMLIAT--KNKSILVVGDIDYLTL----------------------------------------------HILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~--~~~~il~iDeid~~~~----------------------------------------------~a~~ 106 (204)
+...++.+|..+ ..|+||||||+|.+.. .+++
T Consensus 132 ~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~ 211 (495)
T TIGR01241 132 GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALL 211 (495)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHh
Confidence 335677777776 3679999999988600 0888
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHHhc-------CCCHHHHHHhHHHH
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQLMR-------NKVPEIALRGLTDV 178 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~~-------~~~~~~~~~~~~~~ 178 (204)
||||||..+.++.|+..+|..|+..++..........+..+... .+++++|+..++.. ..........+...
T Consensus 212 r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a 291 (495)
T TIGR01241 212 RPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEA 291 (495)
T ss_pred cCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 99999999999999999999999988765433222334444443 57999999987742 12222345555555
Q ss_pred HHhh
Q 041769 179 FKIK 182 (204)
Q Consensus 179 ~~~~ 182 (204)
++..
T Consensus 292 ~~~~ 295 (495)
T TIGR01241 292 IDRV 295 (495)
T ss_pred HHHH
Confidence 5543
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.88 E-value=5.1e-22 Score=157.30 Aligned_cols=159 Identities=16% Similarity=0.272 Sum_probs=126.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccCh----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKEN---- 76 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~---- 76 (204)
+|++|+|+++.|..- ..+..++.+++.|.+| .|+.+|||||||||||++|+++|++...+++.+....+.+.
T Consensus 119 t~ddViGqEeAK~kc-rli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd 194 (368)
T COG1223 119 TLDDVIGQEEAKRKC-RLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD 194 (368)
T ss_pred cHhhhhchHHHHHHH-HHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh
Confidence 589999999887763 6778888888877654 36779999999999999999999999999999998876432
Q ss_pred --HHHHHHHHhc--CCCeEEEEecCCccchh-------------------------------------------hhhhcc
Q 041769 77 --MELRNMLIAT--KNKSILVVGDIDYLTLH-------------------------------------------ILLRSS 109 (204)
Q Consensus 77 --~~~~~~~~~~--~~~~il~iDeid~~~~~-------------------------------------------a~~r~~ 109 (204)
..+.+.+..+ ..|||+||||+|.+.++ +..| +
T Consensus 195 gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiR-s 273 (368)
T COG1223 195 GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIR-S 273 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHH-h
Confidence 3455666655 37999999999999332 3444 4
Q ss_pred ccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHHhc
Q 041769 110 CMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQLMR 164 (204)
Q Consensus 110 R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~~ 164 (204)
||...|+|..|+.+++..|++.|......+....+..+.. ..|+|+-+|.+.+++
T Consensus 274 RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 274 RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHH
Confidence 9999999999999999999998887665555555555554 378999999987753
No 22
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.9e-23 Score=162.62 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=132.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+++++.|-.++.+.+.+.+...+-+++.|..+|+.+|.|+|+|||||||||.+|+++|+..+.-++.+-.|.+.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvge 254 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 254 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhh
Confidence 57889999999999999999999999999999999999999999999999999999999999999888777763
Q ss_pred ChHHHHHHHHhcC--CCeEEEEecCCcc---------------------------------------------chh-hhh
Q 041769 75 ENMELRNMLIATK--NKSILVVGDIDYL---------------------------------------------TLH-ILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~~--~~~il~iDeid~~---------------------------------------------~~~-a~~ 106 (204)
+...++++|..+. ..|+|||||+|.+ |++ |++
T Consensus 255 garmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpall 334 (435)
T KOG0729|consen 255 GARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALL 334 (435)
T ss_pred hHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhc
Confidence 2245677777764 6799999999999 111 999
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCC---CCCcHHHHHHHhhhCCCCHHHHHHHHhcC
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGIT---EHPLLTEIDELIEKANVTLADVVEQLMRN 165 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~i~~~~~~~ 165 (204)
||||+|++++|..|+.+.|..|++.+.... ...-.+-++.+|.+ -+++++..+|...
T Consensus 335 rpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpn--stgaeirsvctea 394 (435)
T KOG0729|consen 335 RPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPN--STGAEIRSVCTEA 394 (435)
T ss_pred CCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCC--CcchHHHHHHHHh
Confidence 999999999999999999887776554432 22233444455543 3689999988643
No 23
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.1e-22 Score=162.90 Aligned_cols=175 Identities=17% Similarity=0.276 Sum_probs=141.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhC-CCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccCh---
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVG-KAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKEN--- 76 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~--- 76 (204)
+|+++.|.+.+++++.+.+...+..++.|...+ ...+.|+|||||||||||.+|+++|++.|.+++.+.++.+..+
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfg 169 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFG 169 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHH
Confidence 589999999999999999999999999997444 3567899999999999999999999999999999999988643
Q ss_pred ---HHHHHHHHhcC--CCeEEEEecCCcc--------------------------------------------ch-hhhh
Q 041769 77 ---MELRNMLIATK--NKSILVVGDIDYL--------------------------------------------TL-HILL 106 (204)
Q Consensus 77 ---~~~~~~~~~~~--~~~il~iDeid~~--------------------------------------------~~-~a~~ 106 (204)
..+..+|.-+. .|++|||||+|.+ ++ .|.+
T Consensus 170 E~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAii 249 (386)
T KOG0737|consen 170 EAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAII 249 (386)
T ss_pred HHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHH
Confidence 22333444333 7999999999998 11 1888
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHHhcCCCHHHHHHhHHHHHHhh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQLMRNKVPEIALRGLTDVFKIK 182 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 182 (204)
| |++..+.++.|+..+|+.|+.-++..........+..+... .|||+.|+.++| ...++..+.++++..
T Consensus 250 R--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC-----~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 250 R--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELC-----RLAALRPIRELLVSE 319 (386)
T ss_pred H--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHH-----HHHhHhHHHHHHHhc
Confidence 8 99999999999999999999988876544333344444443 689999999999 566677777777765
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.6e-21 Score=169.62 Aligned_cols=163 Identities=23% Similarity=0.309 Sum_probs=137.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|+++.|.+..++.+.+.+...+..++.|...++..+.|+|||||||||||++|+++|.+++.+++.++.+++.+
T Consensus 240 ~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGe 319 (494)
T COG0464 240 TLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGE 319 (494)
T ss_pred ceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccch
Confidence 478899999999999999999999999999889999999999999999999999999999999999999887643
Q ss_pred -hHHHHHHHHhcC--CCeEEEEecCCcc------------------------------------------ch-hhhhhcc
Q 041769 76 -NMELRNMLIATK--NKSILVVGDIDYL------------------------------------------TL-HILLRSS 109 (204)
Q Consensus 76 -~~~~~~~~~~~~--~~~il~iDeid~~------------------------------------------~~-~a~~r~~ 109 (204)
...++++|..+. .++||||||+|.+ .+ .+++|||
T Consensus 320 sek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~g 399 (494)
T COG0464 320 SEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPG 399 (494)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccC
Confidence 467888888875 7999999999999 00 1999999
Q ss_pred ccceeEecCCCCHHHHHHHHHHhhCCCCCC--cHHHHHHHhh-hCCCCHHHHHHHHh
Q 041769 110 CMDMHIHMSYCTPFRFKMLASNYFGITEHP--LLTEIDELIE-KANVTLADVVEQLM 163 (204)
Q Consensus 110 R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~-~~~l~~~~i~~~~~ 163 (204)
|||..+.++.|+..++..++..++...... ....+..+.+ ..+++++|+..+|.
T Consensus 400 Rfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ 456 (494)
T COG0464 400 RFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVR 456 (494)
T ss_pred ccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999888743322 1222333333 35689999999884
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.9e-22 Score=173.72 Aligned_cols=161 Identities=21% Similarity=0.298 Sum_probs=133.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCc------c
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTF------K 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~------~ 74 (204)
+|.++.|.++.++.+.+.+ .|+.++.-|..+|-..|+|++++||||||||.||+++|++.+.|+++++.++. .
T Consensus 148 ~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGv 226 (596)
T COG0465 148 TFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV 226 (596)
T ss_pred ChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCC
Confidence 5889999999999985554 47788888999999999999999999999999999999999999999998885 2
Q ss_pred ChHHHHHHHHhcC--CCeEEEEecCCcc-----------------ch-----------------------------hhhh
Q 041769 75 ENMELRNMLIATK--NKSILVVGDIDYL-----------------TL-----------------------------HILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~~--~~~il~iDeid~~-----------------~~-----------------------------~a~~ 106 (204)
+...++..|..+. .|||+||||+|.. |+ .|++
T Consensus 227 GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALl 306 (596)
T COG0465 227 GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALL 306 (596)
T ss_pred CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhc
Confidence 4577888888885 5899999999999 11 2999
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHH
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQL 162 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~ 162 (204)
||||||++|.++.|+-..|++|..-|...........+..+.. ..|++++++.+++
T Consensus 307 RpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~ 363 (596)
T COG0465 307 RPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLL 363 (596)
T ss_pred CCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhH
Confidence 9999999999999999999999886665432222223333333 2688999999987
No 26
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.87 E-value=1.5e-21 Score=170.45 Aligned_cols=158 Identities=21% Similarity=0.279 Sum_probs=119.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc----------eEEeec
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD----------VYDLEL 70 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~----------~~~~~~ 70 (204)
+|++++|.+.+++++.+.+...+.+++.|...|+++++|+|||||||||||++++++|+.++.+ ++.+..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 5889999999999999999999999999999999999999999999999999999999998654 222332
Q ss_pred CCcc------ChHHHHHHHHhc------CCCeEEEEecCCccc----------------------h--------------
Q 041769 71 TTFK------ENMELRNMLIAT------KNKSILVVGDIDYLT----------------------L-------------- 102 (204)
Q Consensus 71 ~~~~------~~~~~~~~~~~~------~~~~il~iDeid~~~----------------------~-------------- 102 (204)
+.+. ....++.+|..+ ..+++|||||+|.+. +
T Consensus 260 ~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~A 339 (512)
T TIGR03689 260 PELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGA 339 (512)
T ss_pred hhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEec
Confidence 3321 123445555544 258999999999870 0
Q ss_pred --------hhhhhccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhhCCCCHHHHHHHH
Q 041769 103 --------HILLRSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEKANVTLADVVEQL 162 (204)
Q Consensus 103 --------~a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~ 162 (204)
.+++||||||.+|.|+.|+.+++..|+..|+.... ++... +....+.+++++..++
T Consensus 340 TN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l-~l~~~---l~~~~g~~~a~~~al~ 403 (512)
T TIGR03689 340 SNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSL-PLDAD---LAEFDGDREATAAALI 403 (512)
T ss_pred cCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccC-CchHH---HHHhcCCCHHHHHHHH
Confidence 08999999999999999999999999998876421 12222 2233455655555443
No 27
>CHL00176 ftsH cell division protein; Validated
Probab=99.87 E-value=3.5e-21 Score=172.75 Aligned_cols=162 Identities=22% Similarity=0.292 Sum_probs=129.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|+++.|.++.++.+.+.+ .++..+..|..+|...++|+||+||||||||++|+++|++++.+++.++.+.+.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv-~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~ 259 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVV-SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGV 259 (638)
T ss_pred CHHhccChHHHHHHHHHHH-HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhh
Confidence 5899999999999986654 456778889999999999999999999999999999999999999999887652
Q ss_pred ChHHHHHHHHhcC--CCeEEEEecCCccc-----------------h-----------------------------hhhh
Q 041769 75 ENMELRNMLIATK--NKSILVVGDIDYLT-----------------L-----------------------------HILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~~--~~~il~iDeid~~~-----------------~-----------------------------~a~~ 106 (204)
....++..|..+. .|+||||||+|.+. + .+++
T Consensus 260 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALl 339 (638)
T CHL00176 260 GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALL 339 (638)
T ss_pred hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhh
Confidence 2345666676653 68899999998761 0 0788
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~ 163 (204)
||||||..+.++.|+..+|..|++.++..........+..+... .|++++|+.+++.
T Consensus 340 RpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 340 RPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred ccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999999999988865433233344444443 6799999998774
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.87 E-value=3.1e-21 Score=164.01 Aligned_cols=161 Identities=21% Similarity=0.235 Sum_probs=128.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+++++.+.+.+...+.++..|..+|+..+.|++||||||||||++|+++|+.++.+++.+..+.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~ 199 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGE 199 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhH
Confidence 478999999999999999998888999999999999999999999999999999999999999988877654421
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc-----------------h-----------------------------hhhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT-----------------L-----------------------------HILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~-----------------~-----------------------------~a~~ 106 (204)
...+...|..+ ..+++|+|||+|.+. + .+++
T Consensus 200 ~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~ 279 (364)
T TIGR01242 200 GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALL 279 (364)
T ss_pred HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhc
Confidence 12344555444 367899999998760 0 1778
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCC---CcHHHHHHHhhhCCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEH---PLLTEIDELIEKANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~i~~~~~ 163 (204)
|++||+..+.++.|+..++..|+..+...... .....+...+ .+++++++..++.
T Consensus 280 r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t--~g~sg~dl~~l~~ 337 (364)
T TIGR01242 280 RPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMT--EGASGADLKAICT 337 (364)
T ss_pred CcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHc--CCCCHHHHHHHHH
Confidence 88999999999999999999999887654322 2233444333 5789999998773
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.6e-22 Score=159.28 Aligned_cols=156 Identities=22% Similarity=0.359 Sum_probs=126.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
.|++|.|.+..|+.+.+.+...+.-+++|.....|+ +|+|||||||||||.||+++|-+.+..+++++-+++.+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGE 209 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 209 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhcc
Confidence 489999999999999999999999888887644443 68999999999999999999999999999999888632
Q ss_pred hHH-HHHHHHhc--CCCeEEEEecCCcc-------------------------------------------chh-hhhhc
Q 041769 76 NME-LRNMLIAT--KNKSILVVGDIDYL-------------------------------------------TLH-ILLRS 108 (204)
Q Consensus 76 ~~~-~~~~~~~~--~~~~il~iDeid~~-------------------------------------------~~~-a~~r~ 108 (204)
... +.++|..+ ..|+||||||||.+ .++ |+.|
T Consensus 210 SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR- 288 (439)
T KOG0739|consen 210 SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR- 288 (439)
T ss_pred HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH-
Confidence 233 34555555 47999999999998 122 6666
Q ss_pred cccceeEecCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhh-CCCCHHHHH
Q 041769 109 SCMDMHIHMSYCTPFRFKMLASNYFGITEHPLL-TEIDELIEK-ANVTLADVV 159 (204)
Q Consensus 109 ~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~-~~l~~~~i~ 159 (204)
||+..|.+|.|....|..++..+++...+.+. ..+..+... .|+++++|.
T Consensus 289 -RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis 340 (439)
T KOG0739|consen 289 -RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS 340 (439)
T ss_pred -HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceE
Confidence 99999999999999999999988887766554 345555554 688888765
No 30
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=7.1e-20 Score=143.45 Aligned_cols=134 Identities=19% Similarity=0.285 Sum_probs=88.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|++++||+..+..+.-.+.......+ .-.+++||||||+||||||+.||++++.++...+...+....++.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~--------~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~ 93 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGE--------ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLA 93 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS-----------EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHH
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCC--------CcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHH
Confidence 589999998887776434443322111 134699999999999999999999999999999888777778888
Q ss_pred HHHHhcCCCeEEEEecCCccc-----------------------------------------------hhhhhhccccce
Q 041769 81 NMLIATKNKSILVVGDIDYLT-----------------------------------------------LHILLRSSCMDM 113 (204)
Q Consensus 81 ~~~~~~~~~~il~iDeid~~~-----------------------------------------------~~a~~r~~R~~~ 113 (204)
.++.....+.|||||||+.++ +++.+| +||..
T Consensus 94 ~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLr-dRFgi 172 (233)
T PF05496_consen 94 AILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLR-DRFGI 172 (233)
T ss_dssp HHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCC-TTSSE
T ss_pred HHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHH-hhcce
Confidence 888888889999999999991 013333 49999
Q ss_pred eEecCCCCHHHHHHHHHHhhCCCCCCcHHH
Q 041769 114 HIHMSYCTPFRFKMLASNYFGITEHPLLTE 143 (204)
Q Consensus 114 ~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~ 143 (204)
...+.+.+.++...|..+......-.+...
T Consensus 173 ~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~ 202 (233)
T PF05496_consen 173 VLRLEFYSEEELAKIVKRSARILNIEIDED 202 (233)
T ss_dssp EEE----THHHHHHHHHHCCHCTT-EE-HH
T ss_pred ecchhcCCHHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999888877655444444333
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.3e-20 Score=150.91 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=130.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccCh----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKEN---- 76 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~---- 76 (204)
+|+++.|..++...+.+.+..++.++.++-.+|+.+|.|++||||||+|||.+++++|..+|.+++.+..+.+...
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE 209 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE 209 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc
Confidence 5889999999999999999999999999999999999999999999999999999999999999999998887422
Q ss_pred --HHHHHHHHhcC--CCeEEEEecCCcc---------------------------------------------chh-hhh
Q 041769 77 --MELRNMLIATK--NKSILVVGDIDYL---------------------------------------------TLH-ILL 106 (204)
Q Consensus 77 --~~~~~~~~~~~--~~~il~iDeid~~---------------------------------------------~~~-a~~ 106 (204)
.-+++.|..+. .+||||+||||.. |+. +++
T Consensus 210 saRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLl 289 (388)
T KOG0651|consen 210 SARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALL 289 (388)
T ss_pred HHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhc
Confidence 34566666553 6899999999998 111 999
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCC---CCCcHHHHHHHhhhCCCCHHHHHHHHhc
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGIT---EHPLLTEIDELIEKANVTLADVVEQLMR 164 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~i~~~~~~ 164 (204)
||||+|+.++.|.|+...+..+...+.... .....+.+..+. .+|.++++.+.|-.
T Consensus 290 RpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~--d~f~gad~rn~~tE 348 (388)
T KOG0651|consen 290 RPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLV--DGFNGADLRNVCTE 348 (388)
T ss_pred CCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHH--hccChHHHhhhccc
Confidence 999999999999999998877665444322 222233444444 36688887776643
No 32
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.82 E-value=3.1e-19 Score=163.83 Aligned_cols=162 Identities=22% Similarity=0.266 Sum_probs=128.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+++++.+.+.+...+.+++.+..+|+..+.|++||||||||||++++++|+.++.+++.++.+.+..
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~ 255 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGE 255 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccH
Confidence 588999999999999999998889999999999999999999999999999999999999999999988765421
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc-----------------h--------------------------hhhhhcc
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT-----------------L--------------------------HILLRSS 109 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~-----------------~--------------------------~a~~r~~ 109 (204)
...+..+|..+ ..+++|+|||+|.+. + .++.|++
T Consensus 256 ~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~g 335 (733)
T TIGR01243 256 SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPG 335 (733)
T ss_pred HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCch
Confidence 24566677665 367899999998760 0 0677889
Q ss_pred ccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHH
Q 041769 110 CMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQL 162 (204)
Q Consensus 110 R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~ 162 (204)
||+..+.++.|+..++..|+..+...........+..+.. ..+++++++..++
T Consensus 336 Rfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~ 389 (733)
T TIGR01243 336 RFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALA 389 (733)
T ss_pred hccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHH
Confidence 9999999999999999999887665432211122333333 2688999988766
No 33
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.82 E-value=6.3e-19 Score=146.92 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=107.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|+++.+.-.+-....+.+..++. +..+...|+..|.+++||||||||||.+++++|+++|.+++.++.+++.
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~-kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGE 191 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIA-KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGE 191 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHH-hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCc
Confidence 355565554444444444333332 2334447788899999999999999999999999999999999998874
Q ss_pred ChHHHHHHHHhcC-------CCeEEEEecCCcc---------------------c---------h-----h---------
Q 041769 75 ENMELRNMLIATK-------NKSILVVGDIDYL---------------------T---------L-----H--------- 103 (204)
Q Consensus 75 ~~~~~~~~~~~~~-------~~~il~iDeid~~---------------------~---------~-----~--------- 103 (204)
+...+++.|..+. .+|||||||||.+ + + .
T Consensus 192 sEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~V 271 (413)
T PLN00020 192 PGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPI 271 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceE
Confidence 3467788887663 6999999999987 0 0 0
Q ss_pred ------------hhhhccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh
Q 041769 104 ------------ILLRSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK 150 (204)
Q Consensus 104 ------------a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 150 (204)
+++|+||||..+ ..|+.++|..|++.++...... ...+..+.+.
T Consensus 272 IaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~ 327 (413)
T PLN00020 272 IVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDT 327 (413)
T ss_pred EEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHc
Confidence 888999999975 4799999999998877654332 3555555554
No 34
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.81 E-value=3.3e-19 Score=161.14 Aligned_cols=162 Identities=17% Similarity=0.269 Sum_probs=126.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|+++.|.+..++.+.+.+. +...+..+..++...++|++|+||||||||+++++++++++.+++.++.+++.
T Consensus 150 ~~~di~g~~~~~~~l~~i~~-~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~ 228 (644)
T PRK10733 150 TFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGV 228 (644)
T ss_pred cHHHHcCHHHHHHHHHHHHH-HhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcc
Confidence 36788888888888866554 45566677778888889999999999999999999999999999999887642
Q ss_pred ChHHHHHHHHhc--CCCeEEEEecCCccc-----------------hh-----------------------------hhh
Q 041769 75 ENMELRNMLIAT--KNKSILVVGDIDYLT-----------------LH-----------------------------ILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~--~~~~il~iDeid~~~-----------------~~-----------------------------a~~ 106 (204)
....++..|..+ ..|+||||||+|.+. ++ +++
T Consensus 229 ~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~ 308 (644)
T PRK10733 229 GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALL 308 (644)
T ss_pred cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHh
Confidence 234566666665 368999999999870 00 889
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~ 163 (204)
||||||+.+.++.|+..+|..|+..|+..........+..+.+ ..|++++|+.+++.
T Consensus 309 RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 309 RPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred CCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 9999999999999999999999998886543222223333443 36899999999874
No 35
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.78 E-value=1.3e-18 Score=166.35 Aligned_cols=135 Identities=15% Similarity=0.142 Sum_probs=100.5
Q ss_pred HHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccCh-----------------------------
Q 041769 26 KEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKEN----------------------------- 76 (204)
Q Consensus 26 ~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~----------------------------- 76 (204)
+.....+|...++|+||+||||||||.||+++|++.+.+++.++++++...
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 345577888899999999999999999999999999999999987765310
Q ss_pred --------------------HHHHHHHHhc--CCCeEEEEecCCccc--------hh-----------------------
Q 041769 77 --------------------MELRNMLIAT--KNKSILVVGDIDYLT--------LH----------------------- 103 (204)
Q Consensus 77 --------------------~~~~~~~~~~--~~~~il~iDeid~~~--------~~----------------------- 103 (204)
..++.+|..+ ..||||+|||||.+. ++
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEe
Confidence 0134456555 479999999999981 11
Q ss_pred ---------hhhhccccceeEecCCCCHHHHHHHHHHhh---CCCCC---CcHHHHHHHhhhCCCCHHHHHHHH
Q 041769 104 ---------ILLRSSCMDMHIHMSYCTPFRFKMLASNYF---GITEH---PLLTEIDELIEKANVTLADVVEQL 162 (204)
Q Consensus 104 ---------a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~---~~~~~---~~~~~~~~~~~~~~l~~~~i~~~~ 162 (204)
|++||||||+.|.++.|+..+|+.++..+. +.... .....++.. ..|+++||++++|
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~--T~GfSGADLanLv 1850 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSI--TMGSNARDLVALT 1850 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHh--CCCCCHHHHHHHH
Confidence 999999999999999999888776654322 11111 112333333 3799999999976
No 36
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=2e-18 Score=138.42 Aligned_cols=127 Identities=20% Similarity=0.277 Sum_probs=102.5
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|++++|++++|+++.=.+.....+.+ ...++|||||||.||||||+.+|+++|.++...+...+....++.
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e--------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDla 95 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGE--------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLA 95 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCC--------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHH
Confidence 478899998888777444443332222 246799999999999999999999999999998888888889999
Q ss_pred HHHHhcCCCeEEEEecCCccch-----------------------------------------------hhhhhccccce
Q 041769 81 NMLIATKNKSILVVGDIDYLTL-----------------------------------------------HILLRSSCMDM 113 (204)
Q Consensus 81 ~~~~~~~~~~il~iDeid~~~~-----------------------------------------------~a~~r~~R~~~ 113 (204)
.++.....+.|+|||||+.+.. +..+| .||..
T Consensus 96 aiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLr-dRFGi 174 (332)
T COG2255 96 AILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLR-DRFGI 174 (332)
T ss_pred HHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhH-HhcCC
Confidence 9999999999999999999911 13344 49999
Q ss_pred eEecCCCCHHHHHHHHHHhhCCC
Q 041769 114 HIHMSYCTPFRFKMLASNYFGIT 136 (204)
Q Consensus 114 ~i~~~~p~~~~~~~i~~~~~~~~ 136 (204)
...+.+.+.++...|..+.....
T Consensus 175 ~~rlefY~~~eL~~Iv~r~a~~l 197 (332)
T COG2255 175 IQRLEFYTVEELEEIVKRSAKIL 197 (332)
T ss_pred eeeeecCCHHHHHHHHHHHHHHh
Confidence 99999999999988887765433
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=9.3e-18 Score=154.19 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=126.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc-----eEEeecCCc--
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD-----VYDLELTTF-- 73 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-----~~~~~~~~~-- 73 (204)
+|++++|.+.++.++++.+...+..++.|..+++.+|+|+|||||||||||..|+++|..+... ++.-..++.
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ls 342 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLS 342 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhc
Confidence 5899999999999999999999999999999999999999999999999999999999998432 111111111
Q ss_pred ----cChHHHHHHHHhcC--CCeEEEEecCCcc-----------------ch--------------------------hh
Q 041769 74 ----KENMELRNMLIATK--NKSILVVGDIDYL-----------------TL--------------------------HI 104 (204)
Q Consensus 74 ----~~~~~~~~~~~~~~--~~~il~iDeid~~-----------------~~--------------------------~a 104 (204)
....+++-.|+.+. .|.|+|+||||-+ |+ .+
T Consensus 343 kwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpa 422 (1080)
T KOG0732|consen 343 KWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPA 422 (1080)
T ss_pred cccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchh
Confidence 13456777787774 7999999999955 00 08
Q ss_pred hhhccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh--hCCCCHHHHHHHH
Q 041769 105 LLRSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE--KANVTLADVVEQL 162 (204)
Q Consensus 105 ~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~i~~~~ 162 (204)
+.||||||+.++|+.|+...+..|...+...-..++...+-..+. ..|+-+++++.+|
T Consensus 423 LRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLC 482 (1080)
T KOG0732|consen 423 LRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALC 482 (1080)
T ss_pred hcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHH
Confidence 889999999999999999999888887665443444444333333 2577899988888
No 38
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.7e-17 Score=145.41 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=129.7
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------ChH
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ENM 77 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------~~~ 77 (204)
++.|...+...+.+.+...+..+..+...|+++++|+|+|||||+|||.+++++|++.+..++.++...+. +..
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~ 264 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETES 264 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHH
Confidence 45566667777777888888889999999999999999999999999999999999999999999988652 457
Q ss_pred HHHHHHHhcC--C-CeEEEEecCCccc-----------------------------------------hh-hhhhccccc
Q 041769 78 ELRNMLIATK--N-KSILVVGDIDYLT-----------------------------------------LH-ILLRSSCMD 112 (204)
Q Consensus 78 ~~~~~~~~~~--~-~~il~iDeid~~~-----------------------------------------~~-a~~r~~R~~ 112 (204)
++++.|..+. . |++++|||+|.+. ++ ++.| ||||
T Consensus 265 ~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd 343 (693)
T KOG0730|consen 265 NLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFD 343 (693)
T ss_pred HHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCc
Confidence 7888888873 3 8999999999981 11 5555 9999
Q ss_pred eeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHh-hhCCCCHHHHHHHHh
Q 041769 113 MHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELI-EKANVTLADVVEQLM 163 (204)
Q Consensus 113 ~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~i~~~~~ 163 (204)
..+.+..|+...|..+++.+...........+..+. ..+|+.++|+...|.
T Consensus 344 ~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ 395 (693)
T KOG0730|consen 344 REVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCR 395 (693)
T ss_pred ceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHH
Confidence 999999999999999998887655444333333333 358999999999884
No 39
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.3e-16 Score=135.68 Aligned_cols=162 Identities=16% Similarity=0.219 Sum_probs=127.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccCh----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKEN---- 76 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~---- 76 (204)
.|+++.|....++.+.+.+......+.+|..+.- ..+|+|+.||||+|||.|++++|.+.+..++.+.++++...
T Consensus 151 ~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~-p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge 229 (428)
T KOG0740|consen 151 GWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLRE-PVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGE 229 (428)
T ss_pred cccCCcchhhHHHHhhhhhhhcccchHhhhcccc-ccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccCh
Confidence 3789999999999998888877777777764432 35689999999999999999999999999999999987432
Q ss_pred --HHHHHHHHhc--CCCeEEEEecCCcc--------------------------------------------chh-hhhh
Q 041769 77 --MELRNMLIAT--KNKSILVVGDIDYL--------------------------------------------TLH-ILLR 107 (204)
Q Consensus 77 --~~~~~~~~~~--~~~~il~iDeid~~--------------------------------------------~~~-a~~r 107 (204)
..++.+|.-+ .+|+|+||||+|++ .++ +.+|
T Consensus 230 ~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R 309 (428)
T KOG0740|consen 230 SEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR 309 (428)
T ss_pred HHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH
Confidence 2334444444 38999999999998 111 6777
Q ss_pred ccccceeEecCCCCHHHHHHHHHHhhCCCCC-CcHHHHHHHhhh-CCCCHHHHHHHHhcC
Q 041769 108 SSCMDMHIHMSYCTPFRFKMLASNYFGITEH-PLLTEIDELIEK-ANVTLADVVEQLMRN 165 (204)
Q Consensus 108 ~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~-~~l~~~~i~~~~~~~ 165 (204)
||...+.++.|+.++|..++..++..... ....++..+++. .|+++.++..+|...
T Consensus 310 --rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea 367 (428)
T KOG0740|consen 310 --RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEA 367 (428)
T ss_pred --HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 99999999999999999999988876533 333556666653 689999999998653
No 40
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.6e-17 Score=138.80 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=102.8
Q ss_pred hHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-ceEEeecCCc------cChHHHHHHHHhcC----------
Q 041769 25 RKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF-DVYDLELTTF------KENMELRNMLIATK---------- 87 (204)
Q Consensus 25 ~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~---------- 87 (204)
.++..+++|++..+|+|||||||||||.+||.|...++. .=-.++...+ .++.+++++|..+.
T Consensus 244 pp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 244 PPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred CHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 568889999999999999999999999999999998853 2223344443 24577888877762
Q ss_pred CCeEEEEecCCcc-----------------------------ch----------------hhhhhccccceeEecCCCCH
Q 041769 88 NKSILVVGDIDYL-----------------------------TL----------------HILLRSSCMDMHIHMSYCTP 122 (204)
Q Consensus 88 ~~~il~iDeid~~-----------------------------~~----------------~a~~r~~R~~~~i~~~~p~~ 122 (204)
.-.||+|||||.+ .+ .|++||||+..++++..|++
T Consensus 324 gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE 403 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDE 403 (744)
T ss_pred CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCc
Confidence 3469999999998 00 19999999999999999999
Q ss_pred HHHHHHHHHhhCCC-------CCCcHHHHHHHhhhCCCCHHHHHHHHh
Q 041769 123 FRFKMLASNYFGIT-------EHPLLTEIDELIEKANVTLADVVEQLM 163 (204)
Q Consensus 123 ~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~i~~~~~ 163 (204)
.-|.+|+..+...- ......+++.+. ..||+|++..++.
T Consensus 404 ~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lT--KNfSGAEleglVk 449 (744)
T KOG0741|consen 404 KGRLQILKIHTKRMRENNKLSADVDLKELAALT--KNFSGAELEGLVK 449 (744)
T ss_pred cCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHh--cCCchhHHHHHHH
Confidence 99877766554321 223334455444 4579999988774
No 41
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.64 E-value=5e-15 Score=124.32 Aligned_cols=92 Identities=22% Similarity=0.351 Sum_probs=72.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|++++|+++.++.+...+...... -..+.+++||||||+|||++|+++|+.++..+...+...+.....+.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~ 94 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLA 94 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHH
Confidence 4788999988888776555433221 12245799999999999999999999999988877766666666777
Q ss_pred HHHHhcCCCeEEEEecCCcc
Q 041769 81 NMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 81 ~~~~~~~~~~il~iDeid~~ 100 (204)
..+.....+.+|+|||++.+
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l 114 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRL 114 (328)
T ss_pred HHHHhcccCCEEEEecHhhc
Confidence 77777778899999999987
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.62 E-value=1.8e-14 Score=117.22 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=89.3
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCC---CceeEEECCCCCcHHHHHHHHHHhc-------CCceEEeecC
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAW---KHSYFLYGPPGTGKSSLIAAMTNYL-------NFDVYDLELT 71 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~g~ll~Gp~GtGKT~la~~la~~~-------~~~~~~~~~~ 71 (204)
+++++|.+.+|+++.+.+..... .......|... ..+++|+||||||||++|+++|+.+ ..+++.++.+
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQI-NEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHH-HHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 57899999999999766644322 23334455542 2458999999999999999999875 2355666655
Q ss_pred CccC------hHHHHHHHHhcCCCeEEEEecCCccch-----------h-------------------------h-----
Q 041769 72 TFKE------NMELRNMLIATKNKSILVVGDIDYLTL-----------H-------------------------I----- 104 (204)
Q Consensus 72 ~~~~------~~~~~~~~~~~~~~~il~iDeid~~~~-----------~-------------------------a----- 104 (204)
++.+ ...+.+.|..+ .+++|||||+|.+.- . .
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~ 162 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLN 162 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcC
Confidence 5422 23445566554 467999999997410 0 1
Q ss_pred -hhhccccceeEecCCCCHHHHHHHHHHhhCC
Q 041769 105 -LLRSSCMDMHIHMSYCTPFRFKMLASNYFGI 135 (204)
Q Consensus 105 -~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~ 135 (204)
-++ +||+..+.|+.++..++..++.+++..
T Consensus 163 p~L~-sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 163 PGLR-SRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred hHHH-hccceEEEECCCCHHHHHHHHHHHHHH
Confidence 111 488888889888888888887776643
No 43
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.61 E-value=9.1e-15 Score=121.35 Aligned_cols=92 Identities=20% Similarity=0.317 Sum_probs=72.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|++++|++..++.+...+....... ..+.+++||||||||||++++++|+.++.++...+.........+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 58999999999888766665433211 1245699999999999999999999999888777665555555666
Q ss_pred HHHHhcCCCeEEEEecCCcc
Q 041769 81 NMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 81 ~~~~~~~~~~il~iDeid~~ 100 (204)
..+.....+.+++|||++.+
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l 93 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRL 93 (305)
T ss_pred HHHHhcccCCEEEEehHhhh
Confidence 77777778889999999987
No 44
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.61 E-value=3.1e-14 Score=117.21 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=93.1
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCC---CceeEEECCCCCcHHHHHHHHHHhcC-------CceEEeecCCc
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAW---KHSYFLYGPPGTGKSSLIAAMTNYLN-------FDVYDLELTTF 73 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~g~ll~Gp~GtGKT~la~~la~~~~-------~~~~~~~~~~~ 73 (204)
+++|.+++|+++.+.+.. ...++.+...|+.. +.+++|+||||||||++|+++|+.+. .+++.++.+++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999776555 44555666778754 34799999999999999999998873 25777776544
Q ss_pred c------ChHHHHHHHHhcCCCeEEEEecCCccc-------hh-------------------------------------
Q 041769 74 K------ENMELRNMLIATKNKSILVVGDIDYLT-------LH------------------------------------- 103 (204)
Q Consensus 74 ~------~~~~~~~~~~~~~~~~il~iDeid~~~-------~~------------------------------------- 103 (204)
. +...+.++|..+ .+++|||||++.+. .+
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np 180 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNP 180 (284)
T ss_pred hHhhcccchHHHHHHHHHc-cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCH
Confidence 2 123445555554 45899999998540 00
Q ss_pred hhhhccccceeEecCCCCHHHHHHHHHHhhCCC
Q 041769 104 ILLRSSCMDMHIHMSYCTPFRFKMLASNYFGIT 136 (204)
Q Consensus 104 a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~ 136 (204)
++. .||+..+.|+.++.+++..|+.+++...
T Consensus 181 ~L~--sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 181 GFS--SRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred HHH--hhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 222 3888899999999999888888777543
No 45
>CHL00181 cbbX CbbX; Provisional
Probab=99.60 E-value=6.8e-14 Score=115.28 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=92.3
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCC---ceeEEECCCCCcHHHHHHHHHHhcC-------CceEEeecCC
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWK---HSYFLYGPPGTGKSSLIAAMTNYLN-------FDVYDLELTT 72 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~g~ll~Gp~GtGKT~la~~la~~~~-------~~~~~~~~~~ 72 (204)
++++|.+++|+++.+.+.. ..........|+..+ .+++|+||||||||++|+++|+.+. .+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999776644 333455666776543 2489999999999999999999762 2467777554
Q ss_pred ccC------hHHHHHHHHhcCCCeEEEEecCCccc-------hh------------------------------------
Q 041769 73 FKE------NMELRNMLIATKNKSILVVGDIDYLT-------LH------------------------------------ 103 (204)
Q Consensus 73 ~~~------~~~~~~~~~~~~~~~il~iDeid~~~-------~~------------------------------------ 103 (204)
+.. ......++..+ .+++|||||++.+. .+
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~n 180 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESN 180 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcC
Confidence 321 12334455554 46899999998740 00
Q ss_pred -hhhhccccceeEecCCCCHHHHHHHHHHhhCCC
Q 041769 104 -ILLRSSCMDMHIHMSYCTPFRFKMLASNYFGIT 136 (204)
Q Consensus 104 -a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~ 136 (204)
++. +||+..+.|+.++..++..|+..++...
T Consensus 181 p~L~--sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 181 PGLS--SRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred HHHH--HhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 222 3999999999999999988888877543
No 46
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.59 E-value=5.4e-15 Score=119.81 Aligned_cols=169 Identities=21% Similarity=0.312 Sum_probs=102.5
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC------ceEEeecCCcc
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF------DVYDLELTTFK 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~------~~~~~~~~~~~ 74 (204)
+|+++.|++.+.+.+.+.+.. ....++|||||||||||+.|+++|+++.. .++.++.++-+
T Consensus 34 t~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder 100 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER 100 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc
Confidence 477888887666655444432 11345999999999999999999999954 45666777655
Q ss_pred ChHHHHHHHH---hc------------CCCeEEEEecCCccchh---hhhhc-cccceeEecC----CCCHHH---HHHH
Q 041769 75 ENMELRNMLI---AT------------KNKSILVVGDIDYLTLH---ILLRS-SCMDMHIHMS----YCTPFR---FKML 128 (204)
Q Consensus 75 ~~~~~~~~~~---~~------------~~~~il~iDeid~~~~~---a~~r~-~R~~~~i~~~----~p~~~~---~~~i 128 (204)
+..-.+..+. .. +...|++|||+|.+|-. ++.|. .++..+..|. +++.-. .-..
T Consensus 101 Gisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 101 GISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred cccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 4432222211 11 13479999999999554 44442 2333322222 222111 1112
Q ss_pred HHH-hhCCCCCCcHHHHHHHhhhCCCC-HHHHHHHHhcCCCHHHHHHhHHHHHHhhhh
Q 041769 129 ASN-YFGITEHPLLTEIDELIEKANVT-LADVVEQLMRNKVPEIALRGLTDVFKIKQT 184 (204)
Q Consensus 129 ~~~-~~~~~~~~~~~~~~~~~~~~~l~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (204)
... |.+.....+..++..++..+++. ..+...+++..++.+ +|+++.++|+...
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd--LR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD--LRRAITTLQSLSL 236 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc--HHHHHHHHHHhhc
Confidence 222 33344556667888888887776 334555666666666 8888888887766
No 47
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3e-14 Score=126.41 Aligned_cols=161 Identities=19% Similarity=0.240 Sum_probs=111.7
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH---
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR--- 80 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~--- 80 (204)
+-+|.+++|++|++.+.-....+. -.+.-++|+||||+|||+|+++||+.+|+.++.+...+++..++++
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~-------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK-------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc-------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 557888999999887654322221 1123388999999999999999999999999999999987665554
Q ss_pred ---------HHHHh---c-CCCeEEEEecCCccchh--------------------------------------------
Q 041769 81 ---------NMLIA---T-KNKSILVVGDIDYLTLH-------------------------------------------- 103 (204)
Q Consensus 81 ---------~~~~~---~-~~~~il~iDeid~~~~~-------------------------------------------- 103 (204)
++++. + ..+.++++||||.++.+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl 476 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL 476 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcc
Confidence 22222 2 25679999999999111
Q ss_pred -----hhhhccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhhCCCC------HHHHHHHHhcCCCHHHHH
Q 041769 104 -----ILLRSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEKANVT------LADVVEQLMRNKVPEIAL 172 (204)
Q Consensus 104 -----a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~i~~~~~~~~~~~~~~ 172 (204)
+++ +|+.. |.+.-.+..+...|+.+|+- ...++.+++. ..+....+++...++..+
T Consensus 477 ~tIP~PLl--DRMEi-I~lsgYt~~EKl~IAk~~Li----------Pk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGV 543 (782)
T COG0466 477 DTIPAPLL--DRMEV-IRLSGYTEDEKLEIAKRHLI----------PKQLKEHGLKKGELTITDEAIKDIIRYYTREAGV 543 (782)
T ss_pred ccCChHHh--cceee-eeecCCChHHHHHHHHHhcc----------hHHHHHcCCCccceeecHHHHHHHHHHHhHhhhh
Confidence 222 36665 88888999999999998862 2223334444 233444566777788888
Q ss_pred HhHHHHHHhhhh
Q 041769 173 RGLTDVFKIKQT 184 (204)
Q Consensus 173 ~~~~~~~~~~~~ 184 (204)
|++.+.+...-.
T Consensus 544 R~LeR~i~ki~R 555 (782)
T COG0466 544 RNLEREIAKICR 555 (782)
T ss_pred hHHHHHHHHHHH
Confidence 888877765433
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.56 E-value=3.5e-14 Score=118.91 Aligned_cols=62 Identities=31% Similarity=0.529 Sum_probs=52.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~ 100 (204)
.+++|||||||||||+|+.||+.++..+..+++.. .+..+++++++.+ .+..|||+|||+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf 116 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF 116 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc
Confidence 45999999999999999999999999999887753 4456777777776 25789999999999
No 49
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.4e-13 Score=121.93 Aligned_cols=173 Identities=17% Similarity=0.244 Sum_probs=115.7
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHH---
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMEL--- 79 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~--- 79 (204)
++-+|..++|++|++.+.--.- .|-..+.-+.|+||||+|||+++++||+.+|+.++.++..++...+++
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 3567888899988776642211 122334558899999999999999999999999999998887554443
Q ss_pred ------------HHHHHhcC-CCeEEEEecCCccc---------------------------------hh----------
Q 041769 80 ------------RNMLIATK-NKSILVVGDIDYLT---------------------------------LH---------- 103 (204)
Q Consensus 80 ------------~~~~~~~~-~~~il~iDeid~~~---------------------------------~~---------- 103 (204)
.+.+.... .+.+++|||+|.+. +|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~ 563 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANV 563 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccc
Confidence 23333332 56799999999991 00
Q ss_pred -----hhhhccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhhCCCCHHHH------HHHHhcCCCHHHHH
Q 041769 104 -----ILLRSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEKANVTLADV------VEQLMRNKVPEIAL 172 (204)
Q Consensus 104 -----a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i------~~~~~~~~~~~~~~ 172 (204)
..++ +|+.. |.++-...++.-.|+.+|+ +...+..+|++++++ ...++.+..++..+
T Consensus 564 idtIP~pLl-DRMEv-IelsGYv~eEKv~IA~~yL----------ip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGV 631 (906)
T KOG2004|consen 564 IDTIPPPLL-DRMEV-IELSGYVAEEKVKIAERYL----------IPQALKDCGLKPEQVKISDDALLALIERYCREAGV 631 (906)
T ss_pred cccCChhhh-hhhhe-eeccCccHHHHHHHHHHhh----------hhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhH
Confidence 2222 26655 7777778888778888775 233445566665432 22445566688888
Q ss_pred HhHHHHHHhhhhchhhhhHHHH
Q 041769 173 RGLTDVFKIKQTENDESKAKEA 194 (204)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~ 194 (204)
|++.+-++.......-+-+++.
T Consensus 632 RnLqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 632 RNLQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9888888866655555444433
No 50
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.3e-14 Score=120.31 Aligned_cols=128 Identities=17% Similarity=0.250 Sum_probs=90.8
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----h
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE-----N 76 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~-----~ 76 (204)
|++|++.+.....|..........+. ...+=+.++||||||||||.+|+-||+..|..+..+...++.. .
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~-----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaV 428 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKK-----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAV 428 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhccccc-----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHH
Confidence 67888888777777444333322111 1111245999999999999999999999999999888877632 2
Q ss_pred HHHHHHHHhc---CCCeEEEEecCCcc---------------chhhhh-----------------h--------ccccce
Q 041769 77 MELRNMLIAT---KNKSILVVGDIDYL---------------TLHILL-----------------R--------SSCMDM 113 (204)
Q Consensus 77 ~~~~~~~~~~---~~~~il~iDeid~~---------------~~~a~~-----------------r--------~~R~~~ 113 (204)
..+-++|+=. .++-+|||||+|.+ ++++++ | .+|+|.
T Consensus 429 TkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide 508 (630)
T KOG0742|consen 429 TKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDE 508 (630)
T ss_pred HHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhh
Confidence 3445555544 36779999999998 222211 1 369999
Q ss_pred eEecCCCCHHHHHHHHHHhhC
Q 041769 114 HIHMSYCTPFRFKMLASNYFG 134 (204)
Q Consensus 114 ~i~~~~p~~~~~~~i~~~~~~ 134 (204)
.++|+.|..++|..++..|+.
T Consensus 509 ~veFpLPGeEERfkll~lYln 529 (630)
T KOG0742|consen 509 VVEFPLPGEEERFKLLNLYLN 529 (630)
T ss_pred eeecCCCChHHHHHHHHHHHH
Confidence 999999999999887766654
No 51
>PRK04195 replication factor C large subunit; Provisional
Probab=99.54 E-value=1.4e-13 Score=121.17 Aligned_cols=92 Identities=24% Similarity=0.494 Sum_probs=73.5
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|++++|+++++..+..++..+.. |.+ +.+++||||||+|||++|+++|+.++..++.+++++......+.
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~--------g~~-~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~ 82 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLK--------GKP-KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIE 82 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhc--------CCC-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHH
Confidence 478899999999888887776542 222 56799999999999999999999999999999998876665555
Q ss_pred HHHHhc--------CCCeEEEEecCCccc
Q 041769 81 NMLIAT--------KNKSILVVGDIDYLT 101 (204)
Q Consensus 81 ~~~~~~--------~~~~il~iDeid~~~ 101 (204)
..+... ....+|+|||+|.++
T Consensus 83 ~~i~~~~~~~sl~~~~~kvIiIDEaD~L~ 111 (482)
T PRK04195 83 RVAGEAATSGSLFGARRKLILLDEVDGIH 111 (482)
T ss_pred HHHHHhhccCcccCCCCeEEEEecCcccc
Confidence 554433 146799999999983
No 52
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.50 E-value=8.2e-14 Score=101.05 Aligned_cols=61 Identities=30% Similarity=0.627 Sum_probs=51.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------ChHHHHHHHHhc--CC-CeEEEEecCCcc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ENMELRNMLIAT--KN-KSILVVGDIDYL 100 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~-~~il~iDeid~~ 100 (204)
++|+||||+|||++++.+|+.++.+++.++...+. ....+...|..+ .. +++|+|||+|.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhc
Confidence 68999999999999999999999999999998764 234566666665 23 799999999998
No 53
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.46 E-value=2e-12 Score=119.68 Aligned_cols=120 Identities=24% Similarity=0.277 Sum_probs=84.2
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccCh-------
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKEN------- 76 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~------- 76 (204)
+++|++++++.+.+.+...... +...+.+++|+||||||||++|+++|+.++.+++.+++++....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 4778888888876655433211 11223469999999999999999999999999999887654221
Q ss_pred --------HHHHHHHHhc-CCCeEEEEecCCccch---------------------------------h-----------
Q 041769 77 --------MELRNMLIAT-KNKSILVVGDIDYLTL---------------------------------H----------- 103 (204)
Q Consensus 77 --------~~~~~~~~~~-~~~~il~iDeid~~~~---------------------------------~----------- 103 (204)
..+.+.+... ..+.+++|||+|.+.- +
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~ 473 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI 473 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc
Confidence 2333444433 3456999999998711 0
Q ss_pred -----hhhhccccceeEecCCCCHHHHHHHHHHhh
Q 041769 104 -----ILLRSSCMDMHIHMSYCTPFRFKMLASNYF 133 (204)
Q Consensus 104 -----a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~ 133 (204)
+++ +|++ .+.|+.++..++..|+.+|+
T Consensus 474 ~~i~~~L~--~R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 474 DTIPRPLL--DRME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred hhCCHHHh--CCee-EEecCCCCHHHHHHHHHHHH
Confidence 333 3885 58999999999988888775
No 54
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.46 E-value=4.1e-12 Score=113.01 Aligned_cols=183 Identities=15% Similarity=0.220 Sum_probs=116.2
Q ss_pred cccccCChhHHHHHHHHHHHHHHh-----------------HHHHH----HhCCCCCceeEEECCCCCcHHHHHHHHHHh
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKR-----------------KEFYR----NVGKAWKHSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~~~~----~~~~~~~~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
|.++.+++.+...++.++..|-.. ++.+. ..+-|..+-+||+||||-||||||+.+|+.
T Consensus 270 FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 270 FTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred HHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHh
Confidence 678888999999998888776321 01111 112233345899999999999999999999
Q ss_pred cCCceEEeecCCccChHHHHHHHHhc----------CCCeEEEEecCCccc---hh------------------------
Q 041769 61 LNFDVYDLELTTFKENMELRNMLIAT----------KNKSILVVGDIDYLT---LH------------------------ 103 (204)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~il~iDeid~~~---~~------------------------ 103 (204)
.|..++.+|+++-++...+.+.+..+ .+|.+|++||||-.. ++
T Consensus 350 aGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~r 429 (877)
T KOG1969|consen 350 AGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKR 429 (877)
T ss_pred cCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhh
Confidence 99999999999998887777666554 478999999999872 11
Q ss_pred ------hhhhccccceeEecCCCCHHHHHHHHHH--hhCCCCCCcHHHHHHHhhhCCCC--HHHHHHHH-hcCCCHHHHH
Q 041769 104 ------ILLRSSCMDMHIHMSYCTPFRFKMLASN--YFGITEHPLLTEIDELIEKANVT--LADVVEQL-MRNKVPEIAL 172 (204)
Q Consensus 104 ------a~~r~~R~~~~i~~~~p~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~l~--~~~i~~~~-~~~~~~~~~~ 172 (204)
.+.|| -++..=..-.|.-+.++.++.. |.+.....+..++..+|.++++. ...+..+| +..++-+.++
T Consensus 430 kkkr~~~L~RP-IICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCI 508 (877)
T KOG1969|consen 430 KKKRSKLLTRP-IICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCI 508 (877)
T ss_pred hhhccccccCC-EEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHH
Confidence 13333 1111112222333333332211 11222334557888888887775 44555555 4567888888
Q ss_pred HhHHHHHHhhhhc
Q 041769 173 RGLTDVFKIKQTE 185 (204)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (204)
+.+.-+-...++.
T Consensus 509 NtLQfLa~~~~r~ 521 (877)
T KOG1969|consen 509 NTLQFLASNVDRR 521 (877)
T ss_pred HHHHHHHHhcccc
Confidence 8884333333333
No 55
>PRK06893 DNA replication initiation factor; Validated
Probab=99.46 E-value=1.7e-12 Score=103.80 Aligned_cols=61 Identities=16% Similarity=0.317 Sum_probs=44.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
..++||||||||||||++++|+++ +..+.++++.... ....+.+....+..+|+|||++.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--YFSPAVLENLEQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--hhhHHHHhhcccCCEEEEeChhhh
Confidence 348999999999999999999986 4566666654321 111244555566789999999986
No 56
>PLN03025 replication factor C subunit; Provisional
Probab=99.46 E-value=1.3e-12 Score=109.33 Aligned_cols=90 Identities=21% Similarity=0.266 Sum_probs=61.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc-C----CceEEeecCCccC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL-N----FDVYDLELTTFKE 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-~----~~~~~~~~~~~~~ 75 (204)
+|++++|++++...+...+. .. ...+++||||||||||++|+++|+++ + ..++.++.++..+
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~----~~---------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~ 77 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIAR----DG---------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG 77 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHh----cC---------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc
Confidence 47888888776665533222 11 12359999999999999999999997 2 3466777776555
Q ss_pred hHHHHHHHHhc---------CCCeEEEEecCCccchh
Q 041769 76 NMELRNMLIAT---------KNKSILVVGDIDYLTLH 103 (204)
Q Consensus 76 ~~~~~~~~~~~---------~~~~il~iDeid~~~~~ 103 (204)
...+++.+... ....+++|||+|.++.+
T Consensus 78 ~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~ 114 (319)
T PLN03025 78 IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG 114 (319)
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH
Confidence 55555443321 24679999999999554
No 57
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1e-12 Score=119.12 Aligned_cols=165 Identities=16% Similarity=0.254 Sum_probs=118.1
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCC---Cc-eeEEECCCCCcHHHHHHHHHHhcC---CceEEeecCCccC
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAW---KH-SYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTTFKE 75 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~-g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~~~~~~~ 75 (204)
+.|+|++.....+.+.+... +.|+.. |. .++|.||+|+|||.+|++||..+. ..++.+|||.++.
T Consensus 491 ~rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 45778876666665555422 123321 23 388999999999999999999996 7999999999998
Q ss_pred hHHHHHHHHhcC------------------CCeEEEEecCCcc----------------------------------chh
Q 041769 76 NMELRNMLIATK------------------NKSILVVGDIDYL----------------------------------TLH 103 (204)
Q Consensus 76 ~~~~~~~~~~~~------------------~~~il~iDeid~~----------------------------------~~~ 103 (204)
...+.+++...+ +++||++|||+.. |.+
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 888888777752 4689999999998 000
Q ss_pred ------------------------------hhhhc---cccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh
Q 041769 104 ------------------------------ILLRS---SCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK 150 (204)
Q Consensus 104 ------------------------------a~~r~---~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 150 (204)
..+|| +|+|.+|.|...+......|....+ .++...+..
T Consensus 643 ~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L--------~~l~~~L~~ 714 (786)
T COG0542 643 AGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQL--------NRLAKRLAE 714 (786)
T ss_pred cchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHH--------HHHHHHHHh
Confidence 33334 6999999999999999888887765 455555554
Q ss_pred CCCC---HHHHHHHHhcC-CCHHHHHHhHHHHHHhhh
Q 041769 151 ANVT---LADVVEQLMRN-KVPEIALRGLTDVFKIKQ 183 (204)
Q Consensus 151 ~~l~---~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~ 183 (204)
.+++ ..++..++..+ .++....|-+.+.++..-
T Consensus 715 ~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i 751 (786)
T COG0542 715 RGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEI 751 (786)
T ss_pred CCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHH
Confidence 4444 45556666543 467777777777776543
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.9e-12 Score=112.33 Aligned_cols=166 Identities=16% Similarity=0.242 Sum_probs=92.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++.+...+...+. ... .+..++|+||+|||||++|+.+|+.+++
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~----~~r--------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~ 83 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALK----SGK--------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83 (484)
T ss_pred CHHHHhChHHHHHHHHHHHH----cCC--------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence 58899999877666544433 111 1345899999999999999999999875
Q ss_pred -------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch---hhhhhc-cccceeEecCCCC--HHH
Q 041769 64 -------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL---HILLRS-SCMDMHIHMSYCT--PFR 124 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~---~a~~r~-~R~~~~i~~~~p~--~~~ 124 (204)
.++.++.+.-.+...++++.... ....|++|||+|.++. +++++. ......+.|..-+ ...
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~k 163 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhh
Confidence 24455554333344555544332 2567999999999944 466552 1111122222222 122
Q ss_pred -HHHHHHHhhC-----CCCCCcHHHHHHHhhhCCC--CHHHHHHHHhcC--CCHHHHHHhHHHHH
Q 041769 125 -FKMLASNYFG-----ITEHPLLTEIDELIEKANV--TLADVVEQLMRN--KVPEIALRGLTDVF 179 (204)
Q Consensus 125 -~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~l--~~~~i~~~~~~~--~~~~~~~~~~~~~~ 179 (204)
...|.+|... .....+...+..++...++ +++.+ ..+.+. ++.+.+++.+.+.+
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL-~~Ia~~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGL-FWIAKKGDGSVRDMLSFMEQAI 227 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHcCChHHHHHHHHHHHH
Confidence 1345554221 1122333445566665555 44444 444333 35555555554444
No 59
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.44 E-value=2.4e-12 Score=102.40 Aligned_cols=125 Identities=22% Similarity=0.315 Sum_probs=101.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENM 77 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~ 77 (204)
.+++++|.+.+++.+.++...|+.... ..++||||+.|||||++++++..++ |..++.++-.++..-.
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~p---------annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~ 95 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLP---------ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLP 95 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCC---------CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHH
Confidence 368899999999999999998886433 4569999999999999999999988 7788888888888888
Q ss_pred HHHHHHHhcCCCeEEEEecCCcc----------------------------chh--------------------------
Q 041769 78 ELRNMLIATKNKSILVVGDIDYL----------------------------TLH-------------------------- 103 (204)
Q Consensus 78 ~~~~~~~~~~~~~il~iDeid~~----------------------------~~~-------------------------- 103 (204)
.+...+...+..-|||+||+.-- |.+
T Consensus 96 ~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~ 175 (249)
T PF05673_consen 96 ELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTI 175 (249)
T ss_pred HHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHH
Confidence 88888888888899999997643 000
Q ss_pred --hhhhccccceeEecCCCCHHHHHHHHHHhhC
Q 041769 104 --ILLRSSCMDMHIHMSYCTPFRFKMLASNYFG 134 (204)
Q Consensus 104 --a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~ 134 (204)
.+--..||...+.|..|+.++...|...+..
T Consensus 176 eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 176 EEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred HHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHH
Confidence 1111358999999999999998888887764
No 60
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.8e-12 Score=110.74 Aligned_cols=90 Identities=26% Similarity=0.490 Sum_probs=62.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++.+...+.. .+..+. .+.+++|||||||||||+|+++|+.++.
T Consensus 12 ~~~divGq~~i~~~L~~----~i~~~~--------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~ 79 (472)
T PRK14962 12 TFSEVVGQDHVKKLIIN----ALKKNS--------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRS 79 (472)
T ss_pred CHHHccCcHHHHHHHHH----HHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHH
Confidence 58899999777555433 222221 2456899999999999999999999864
Q ss_pred -------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 64 -------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
.++.++++.-.+...++++.... ....+++|||+|.++-
T Consensus 80 i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~ 131 (472)
T PRK14962 80 IDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK 131 (472)
T ss_pred HhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH
Confidence 46666665444445555554433 2457999999999843
No 61
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.6e-12 Score=111.85 Aligned_cols=95 Identities=17% Similarity=0.412 Sum_probs=69.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD---------------- 64 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~---------------- 64 (204)
+|++++|++.+.+.+...+. ... .+..+||+||+|+|||++|+++|+.+++.
T Consensus 14 ~f~divGq~~v~~~L~~~~~----~~~--------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALD----QQY--------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHH----hCC--------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 58999999887776655443 111 24458999999999999999999999642
Q ss_pred --------eEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccchh---hhhh
Q 041769 65 --------VYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTLH---ILLR 107 (204)
Q Consensus 65 --------~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~~---a~~r 107 (204)
++.++.++-.+..++++++... .+..|++|||+|.++.+ ++++
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk 141 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLK 141 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHH
Confidence 6667766545556677766553 24679999999999553 5555
No 62
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.41 E-value=1.8e-12 Score=119.30 Aligned_cols=94 Identities=18% Similarity=0.335 Sum_probs=72.9
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeecCCccCh--------HHHHHHHHhcC--CCeEEEEec
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLELTTFKEN--------MELRNMLIATK--NKSILVVGD 96 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~il~iDe 96 (204)
..+++|+||||||||++++++|+.+ +..++.++++.+... ..+.+++..+. .+.||||||
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDE 282 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDE 282 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEec
Confidence 4569999999999999999999987 778888887765421 45677777653 578999999
Q ss_pred CCccc---------h--------------------------------h-hhhhccccceeEecCCCCHHHHHHHHHHhh
Q 041769 97 IDYLT---------L--------------------------------H-ILLRSSCMDMHIHMSYCTPFRFKMLASNYF 133 (204)
Q Consensus 97 id~~~---------~--------------------------------~-a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~ 133 (204)
+|.+. . + ++.| ||. .|.++.|+.++...|++...
T Consensus 283 ih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 283 IHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHH
Confidence 99771 1 0 5555 897 58999999998877776543
No 63
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.41 E-value=1.4e-11 Score=102.77 Aligned_cols=87 Identities=18% Similarity=0.240 Sum_probs=62.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|++++|++.++..+...+. .. ..+..++|+||||+|||++++++++.++.+++.++.+. .....++
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~----~~--------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~i~ 85 (316)
T PHA02544 19 TIDECILPAADKETFKSIVK----KG--------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDFVR 85 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHh----cC--------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHHHH
Confidence 47889999888777655543 11 11344777999999999999999999999999998876 2222222
Q ss_pred HHHHh----c---CCCeEEEEecCCcc
Q 041769 81 NMLIA----T---KNKSILVVGDIDYL 100 (204)
Q Consensus 81 ~~~~~----~---~~~~il~iDeid~~ 100 (204)
..+.. . ..+.+|+|||+|.+
T Consensus 86 ~~l~~~~~~~~~~~~~~vliiDe~d~l 112 (316)
T PHA02544 86 NRLTRFASTVSLTGGGKVIIIDEFDRL 112 (316)
T ss_pred HHHHHHHHhhcccCCCeEEEEECcccc
Confidence 22211 1 35789999999988
No 64
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.7e-12 Score=106.22 Aligned_cols=123 Identities=19% Similarity=0.358 Sum_probs=83.8
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhC-----CCCCceeEEECCCCCcHHHHHHHHHHhcCC---------ceEE
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVG-----KAWKHSYFLYGPPGTGKSSLIAAMTNYLNF---------DVYD 67 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~g~ll~Gp~GtGKT~la~~la~~~~~---------~~~~ 67 (204)
|++++.....|+++.......+ .|.+.+ +.+.+-+|++||||||||+|.+++|+.+.. .++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l----~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASAL----LFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHH----HHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 7888888888888876654433 233333 344566999999999999999999999942 3445
Q ss_pred eecCCc------cChHHHHHHHHhc-------CCCeEEEEecCCccchh-------------------------------
Q 041769 68 LELTTF------KENMELRNMLIAT-------KNKSILVVGDIDYLTLH------------------------------- 103 (204)
Q Consensus 68 ~~~~~~------~~~~~~~~~~~~~-------~~~~il~iDeid~~~~~------------------------------- 103 (204)
++..++ .+...+.++|++. ..-..++|||+++++..
T Consensus 217 inshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~ 296 (423)
T KOG0744|consen 217 INSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYP 296 (423)
T ss_pred EehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCC
Confidence 554443 1223344444443 23457789999998110
Q ss_pred ----------------hhhhccccceeEecCCCCHHHHHHHHH
Q 041769 104 ----------------ILLRSSCMDMHIHMSYCTPFRFKMLAS 130 (204)
Q Consensus 104 ----------------a~~r~~R~~~~i~~~~p~~~~~~~i~~ 130 (204)
|+.- |.|....++.|+...+..|..
T Consensus 297 NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilk 337 (423)
T KOG0744|consen 297 NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILK 337 (423)
T ss_pred CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHH
Confidence 4444 999999999999988766544
No 65
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.39 E-value=1.4e-11 Score=106.58 Aligned_cols=89 Identities=24% Similarity=0.378 Sum_probs=62.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|++++|++..... ...+...+... ...+++|+||||||||++|+++++.++..++.++.... +...++
T Consensus 10 ~l~d~vGq~~~v~~-~~~L~~~i~~~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~~~ir 78 (413)
T PRK13342 10 TLDEVVGQEHLLGP-GKPLRRMIEAG---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-GVKDLR 78 (413)
T ss_pred CHHHhcCcHHHhCc-chHHHHHHHcC---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cHHHHH
Confidence 47888888765433 11122222211 13469999999999999999999999999999887643 334455
Q ss_pred HHHHhc------CCCeEEEEecCCcc
Q 041769 81 NMLIAT------KNKSILVVGDIDYL 100 (204)
Q Consensus 81 ~~~~~~------~~~~il~iDeid~~ 100 (204)
.++... ....+|+|||+|.+
T Consensus 79 ~ii~~~~~~~~~g~~~vL~IDEi~~l 104 (413)
T PRK13342 79 EVIEEARQRRSAGRRTILFIDEIHRF 104 (413)
T ss_pred HHHHHHHHhhhcCCceEEEEechhhh
Confidence 554443 26689999999998
No 66
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.39 E-value=6.8e-12 Score=115.08 Aligned_cols=164 Identities=12% Similarity=0.264 Sum_probs=103.9
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCC-CCCc-eeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHH
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGK-AWKH-SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRN 81 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 81 (204)
.|+|+++.++.+.+.+..... .+.. ..|. .++|+||||||||++|+++|+.++.+++.++++.+.....+.+
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~------gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRA------GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSR 532 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhc------cccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHH
Confidence 478888888877776654321 1111 1233 4999999999999999999999999999999987654322222
Q ss_pred HHHh------------------cCCCeEEEEecCCccchh----------------------------------------
Q 041769 82 MLIA------------------TKNKSILVVGDIDYLTLH---------------------------------------- 103 (204)
Q Consensus 82 ~~~~------------------~~~~~il~iDeid~~~~~---------------------------------------- 103 (204)
++.. ..+.+||+|||+|.+...
T Consensus 533 LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~ 612 (758)
T PRK11034 533 LIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRET 612 (758)
T ss_pred HcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHH
Confidence 2221 135689999999999110
Q ss_pred ---------------------hhhhc---cccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhhCCCC---HH
Q 041769 104 ---------------------ILLRS---SCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEKANVT---LA 156 (204)
Q Consensus 104 ---------------------a~~r~---~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~---~~ 156 (204)
..++| +|+|..|.|...+......|+..++ .++...+...++. ..
T Consensus 613 ~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l--------~~~~~~l~~~~i~l~~~~ 684 (758)
T PRK11034 613 ERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI--------VELQAQLDQKGVSLEVSQ 684 (758)
T ss_pred hhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHH--------HHHHHHHHHCCCCceECH
Confidence 11233 6888888888888888877776654 2333444433333 33
Q ss_pred HHHHHHh-cCCCHHHHHHhHHHHHHh
Q 041769 157 DVVEQLM-RNKVPEIALRGLTDVFKI 181 (204)
Q Consensus 157 ~i~~~~~-~~~~~~~~~~~~~~~~~~ 181 (204)
.+..++. ...++....|.+.+.++.
T Consensus 685 ~~~~~l~~~~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 685 EARDWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_pred HHHHHHHHhCCCCCCCCchHHHHHHH
Confidence 3444443 344555555555555553
No 67
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.2e-11 Score=110.61 Aligned_cols=90 Identities=19% Similarity=0.424 Sum_probs=65.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++|+|++.+...+...+. .. ..+.++||+||+|+|||++|+++|+.+++
T Consensus 13 tFddVIGQe~vv~~L~~aI~----~g--------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~ 80 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALE----RG--------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKA 80 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHH
Confidence 58999999877666644443 11 12456899999999999999999999865
Q ss_pred -------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 64 -------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
.++.++.++-.....+++++... .+..|++|||+|.++.
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~ 132 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST 132 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH
Confidence 45566665444556677766554 2567999999999943
No 68
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=6.3e-12 Score=113.58 Aligned_cols=95 Identities=19% Similarity=0.379 Sum_probs=67.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++|+|++.+++.|...+. .. ..+..+||+||+|||||++++.+++.+++
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~----~g--------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~ 81 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALD----GG--------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHh----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHH
Confidence 58999999877776644432 11 12455899999999999999999998864
Q ss_pred -------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch---hhhhh
Q 041769 64 -------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL---HILLR 107 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~---~a~~r 107 (204)
.++.++..+-.+..++++++... ....|+||||+|.++. +++++
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLK 141 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLK 141 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHH
Confidence 35555555444455666666653 2567999999999954 45655
No 69
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=8.9e-12 Score=114.72 Aligned_cols=164 Identities=15% Similarity=0.290 Sum_probs=104.0
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCC---CCce-eEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHH
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKA---WKHS-YFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENME 78 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~g-~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 78 (204)
+.|+|++..++.+.+.+... ..|+. .+.| ++|+||||||||++|+++|+.++.+++.++++.+.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 35677776666665554422 12332 1333 899999999999999999999999999999987643222
Q ss_pred -------------------HHHHHHhcCCCeEEEEecCCccchh------------------------------------
Q 041769 79 -------------------LRNMLIATKNKSILVVGDIDYLTLH------------------------------------ 103 (204)
Q Consensus 79 -------------------~~~~~~~~~~~~il~iDeid~~~~~------------------------------------ 103 (204)
+.+.+. ..+.+|++|||+|.+..+
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g 604 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAG 604 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcc
Confidence 222222 246789999999998110
Q ss_pred -------------------------hhhhc---cccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhhCCCC-
Q 041769 104 -------------------------ILLRS---SCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEKANVT- 154 (204)
Q Consensus 104 -------------------------a~~r~---~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~- 154 (204)
..++| +|+|..+.|...+.++...|+.+.+. ++...+...++.
T Consensus 605 ~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~--------~l~~~l~~~~~~l 676 (731)
T TIGR02639 605 ASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVD--------ELSKQLNEKNIKL 676 (731)
T ss_pred hhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHH--------HHHHHHHhCCCeE
Confidence 01222 58888888888888888888776552 233333332221
Q ss_pred --HHHHHHHHhc-CCCHHHHHHhHHHHHHhhh
Q 041769 155 --LADVVEQLMR-NKVPEIALRGLTDVFKIKQ 183 (204)
Q Consensus 155 --~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~ 183 (204)
..++..++.. ..++....|.+.++++..-
T Consensus 677 ~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~ 708 (731)
T TIGR02639 677 ELTDDAKKYLAEKGYDEEFGARPLARVIQEEI 708 (731)
T ss_pred EeCHHHHHHHHHhCCCcccCchHHHHHHHHHh
Confidence 3445555544 3466666777777766543
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.2e-11 Score=110.31 Aligned_cols=95 Identities=21% Similarity=0.412 Sum_probs=68.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++|+|++.+++.+.+.+. ... .+..+||+||+|+|||++++.+++.+++
T Consensus 14 tFddVIGQe~vv~~L~~al~----~gR--------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALE----QQR--------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHH----hCC--------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 58999999877776654443 222 2455899999999999999999999975
Q ss_pred ------------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch---hhhhh
Q 041769 64 ------------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL---HILLR 107 (204)
Q Consensus 64 ------------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~---~a~~r 107 (204)
+++.++..+-.+..++++++... .+..|+||||+|.++. +++++
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLK 146 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLK 146 (700)
T ss_pred HHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHH
Confidence 34455554434456666666553 2567999999999944 46666
No 71
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=2.2e-11 Score=106.56 Aligned_cols=95 Identities=17% Similarity=0.338 Sum_probs=69.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC------------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN------------------ 62 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~------------------ 62 (204)
+|++++|++.+.+.+.+.+. .. ..+.++||+||+|+||||+|+.+|+.++
T Consensus 11 ~f~dliGQe~vv~~L~~a~~----~~--------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~ 78 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFT----LN--------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCIS 78 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHH----cC--------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHH
Confidence 58999999877665533322 11 2255799999999999999999998652
Q ss_pred ------CceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch---hhhhh
Q 041769 63 ------FDVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL---HILLR 107 (204)
Q Consensus 63 ------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~---~a~~r 107 (204)
.+++.+++++..+..++++++... ....+++|||+|.++. +++++
T Consensus 79 i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK 138 (491)
T PRK14964 79 IKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLK 138 (491)
T ss_pred HhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHH
Confidence 356777877666667777776654 2567999999999944 35554
No 72
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.8e-11 Score=109.81 Aligned_cols=95 Identities=19% Similarity=0.406 Sum_probs=66.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++|+|++.+...+.+.+. ... .+..+||+||+|+|||++|+++|+.+++
T Consensus 14 ~f~dviGQe~vv~~L~~~l~----~~r--------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALT----QQR--------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHH----cCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 58999999877666544333 211 2455899999999999999999999864
Q ss_pred ------------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccchh---hhhh
Q 041769 64 ------------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTLH---ILLR 107 (204)
Q Consensus 64 ------------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~~---a~~r 107 (204)
.++.++..+-.+..++++++... ....|++|||+|.++.. ++++
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLK 146 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLK 146 (618)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHH
Confidence 24445544434445666666553 24679999999999543 5555
No 73
>PRK08727 hypothetical protein; Validated
Probab=99.35 E-value=3.2e-11 Score=96.64 Aligned_cols=61 Identities=26% Similarity=0.374 Sum_probs=47.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
..++|+||+|||||+++++++.++ +..+.++++.... ..+...+.......+|+|||++.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~l~~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--GRLRDALEALEGRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--hhHHHHHHHHhcCCEEEEeCcccc
Confidence 459999999999999999997775 6677777765433 234456666677789999999987
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=9.9e-11 Score=103.09 Aligned_cols=90 Identities=14% Similarity=0.330 Sum_probs=63.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++.+...+...+. .. ..+.+++|+||||||||++|+++|+.+++
T Consensus 19 ~f~dliGq~~vv~~L~~ai~----~~--------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~ 86 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTIL----ND--------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT 86 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHH----cC--------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh
Confidence 57899999776665533332 11 22456999999999999999999999854
Q ss_pred -----------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 64 -----------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 64 -----------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
.++.++..+-.+..+++.++... ....+++|||++.++.
T Consensus 87 ~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 87 NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK 142 (507)
T ss_pred HHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH
Confidence 33444444434456677776654 2567999999999844
No 75
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.34 E-value=2e-11 Score=112.66 Aligned_cols=162 Identities=19% Similarity=0.208 Sum_probs=105.6
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHH----
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMEL---- 79 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~---- 79 (204)
+++|.+++|+++.+.+...... +...+..++|+||||+|||++++.+|+.++.+++.+++++......+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 4788888888887776644321 11123459999999999999999999999999999988775433222
Q ss_pred -----------HHHHHhcC-CCeEEEEecCCccch-------h-------------------------------------
Q 041769 80 -----------RNMLIATK-NKSILVVGDIDYLTL-------H------------------------------------- 103 (204)
Q Consensus 80 -----------~~~~~~~~-~~~il~iDeid~~~~-------~------------------------------------- 103 (204)
.+.+.... .+.+++|||+|.++. +
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~ 475 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM 475 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC
Confidence 22233332 456999999999811 1
Q ss_pred ----hhhhccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHH-hh--hCCCCHHHHHHHHhcCCCHHHHHHhHH
Q 041769 104 ----ILLRSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDEL-IE--KANVTLADVVEQLMRNKVPEIALRGLT 176 (204)
Q Consensus 104 ----a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~--~~~l~~~~i~~~~~~~~~~~~~~~~~~ 176 (204)
+++ +|+. .+.+..++.++...|+.+|+.. ..+... +. ...++ .++..++++.+.++...|.+.
T Consensus 476 ~i~~aLl--~R~~-ii~~~~~t~eek~~Ia~~~L~~------k~~~~~~l~~~~l~i~-~~ai~~ii~~yt~e~GaR~Le 545 (784)
T PRK10787 476 NIPAPLL--DRME-VIRLSGYTEDEKLNIAKRHLLP------KQIERNALKKGELTVD-DSAIIGIIRYYTREAGVRSLE 545 (784)
T ss_pred CCCHHHh--ccee-eeecCCCCHHHHHHHHHHhhhH------HHHHHhCCCCCeEEEC-HHHHHHHHHhCCcccCCcHHH
Confidence 333 3885 4889999999999998887621 111111 11 12233 344445555666777777777
Q ss_pred HHHHhh
Q 041769 177 DVFKIK 182 (204)
Q Consensus 177 ~~~~~~ 182 (204)
+.+++.
T Consensus 546 R~I~~i 551 (784)
T PRK10787 546 REISKL 551 (784)
T ss_pred HHHHHH
Confidence 777653
No 76
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.34 E-value=1.5e-11 Score=97.70 Aligned_cols=92 Identities=24% Similarity=0.421 Sum_probs=57.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecCCccC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELTTFKE 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~~~~~ 75 (204)
||++++..+.-+. +...+..+...+. .....+++|||+|+|||+|++++++++ +..+++++...+..
T Consensus 6 tFdnfv~g~~N~~-a~~~~~~ia~~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~ 77 (219)
T PF00308_consen 6 TFDNFVVGESNEL-AYAAAKAIAENPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR 77 (219)
T ss_dssp SCCCS--TTTTHH-HHHHHHHHHHSTT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH
T ss_pred ccccCCcCCcHHH-HHHHHHHHHhcCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH
Confidence 6888875443322 2233333332211 112348999999999999999999875 56788887655421
Q ss_pred -------hHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 76 -------NMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 76 -------~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
...+.+.........+|+|||++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l 109 (219)
T PF00308_consen 78 EFADALRDGEIEEFKDRLRSADLLIIDDIQFL 109 (219)
T ss_dssp HHHHHHHTTSHHHHHHHHCTSSEEEEETGGGG
T ss_pred HHHHHHHcccchhhhhhhhcCCEEEEecchhh
Confidence 1223344455667889999999998
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=3.9e-11 Score=108.03 Aligned_cols=90 Identities=18% Similarity=0.405 Sum_probs=64.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD---------------- 64 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~---------------- 64 (204)
+|++|+|++.++..+...+.. + ..+.++||+||+|+|||++|+++|+.+++.
T Consensus 14 tFddIIGQe~vv~~L~~ai~~----~--------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~ 81 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDE----G--------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQ 81 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHH
Confidence 589999998877766555441 1 225669999999999999999999987532
Q ss_pred --------eEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 65 --------VYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 65 --------~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
++.++.++-.+...+++++... ....|+||||+|.++.
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~ 133 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK 133 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH
Confidence 3344444434445667766543 3567999999999854
No 78
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.33 E-value=1.7e-11 Score=96.42 Aligned_cols=143 Identities=20% Similarity=0.256 Sum_probs=90.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc-C----CceEEeecCCccChHHHHHHHHhc---------CCCeEEEEecCCccchh-
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL-N----FDVYDLELTTFKENMELRNMLIAT---------KNKSILVVGDIDYLTLH- 103 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~il~iDeid~~~~~- 103 (204)
++++.||||+||||.+.++|+++ | -.+..+|+|+-++..-++..+... .+..|+++||+|++|-.
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gA 129 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGA 129 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHH
Confidence 49999999999999999999998 4 356789999887776666554443 14579999999999654
Q ss_pred --hhhhc-------cccceeEecC--CCCH-HHHHHHHHHhhCCCCCCcHHHHHHHhhh--CCCCHHHHHHHHh-cCCCH
Q 041769 104 --ILLRS-------SCMDMHIHMS--YCTP-FRFKMLASNYFGITEHPLLTEIDELIEK--ANVTLADVVEQLM-RNKVP 168 (204)
Q Consensus 104 --a~~r~-------~R~~~~i~~~--~p~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~i~~~~~-~~~~~ 168 (204)
|+.|. -||-...... ...+ ..|..++ +|....+..+..++..+++. ..++++.+..++. ...+.
T Consensus 130 QQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDM 208 (333)
T KOG0991|consen 130 QQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDM 208 (333)
T ss_pred HHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchH
Confidence 55552 2443222110 0111 1133333 35555555555566666554 3455666655553 34678
Q ss_pred HHHHHhHHHHHHhh
Q 041769 169 EIALRGLTDVFKIK 182 (204)
Q Consensus 169 ~~~~~~~~~~~~~~ 182 (204)
+.+++++.+.++.-
T Consensus 209 RQalNnLQst~~g~ 222 (333)
T KOG0991|consen 209 RQALNNLQSTVNGF 222 (333)
T ss_pred HHHHHHHHHHhccc
Confidence 88888887766543
No 79
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.2e-10 Score=99.12 Aligned_cols=90 Identities=18% Similarity=0.360 Sum_probs=60.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++...+.+...+. .. ..+..++|+||||+|||++|+++|+.+..
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~----~~--------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~ 81 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLS----LG--------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKE 81 (363)
T ss_pred chhhccChHHHHHHHHHHHH----cC--------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 58999999877766543332 11 12455899999999999999999999853
Q ss_pred -------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 64 -------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
+++.++.++-.....+++++... ....+++|||+|.++-
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~ 133 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR 133 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH
Confidence 23344443323334555555543 2456999999999953
No 80
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.32 E-value=2.8e-11 Score=110.58 Aligned_cols=90 Identities=22% Similarity=0.323 Sum_probs=58.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|++++|++...... ..+...+.. ....+++|||||||||||+|+++++.++.+++.++.... ....++
T Consensus 26 tldd~vGQe~ii~~~-~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i~dir 94 (725)
T PRK13341 26 TLEEFVGQDHILGEG-RLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GVKDLR 94 (725)
T ss_pred cHHHhcCcHHHhhhh-HHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hhHHHH
Confidence 467778776554321 122222221 112459999999999999999999999988888876532 222233
Q ss_pred HHHHh-------cCCCeEEEEecCCccc
Q 041769 81 NMLIA-------TKNKSILVVGDIDYLT 101 (204)
Q Consensus 81 ~~~~~-------~~~~~il~iDeid~~~ 101 (204)
+.+.. .....+|||||+|.++
T Consensus 95 ~~i~~a~~~l~~~~~~~IL~IDEIh~Ln 122 (725)
T PRK13341 95 AEVDRAKERLERHGKRTILFIDEVHRFN 122 (725)
T ss_pred HHHHHHHHHhhhcCCceEEEEeChhhCC
Confidence 32222 2356799999999983
No 81
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=6.5e-11 Score=105.11 Aligned_cols=95 Identities=19% Similarity=0.438 Sum_probs=65.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++.+...+...+. ... .+..++|+||||+|||++|+++|+.+++
T Consensus 14 ~f~divGq~~v~~~L~~~i~----~~~--------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~ 81 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALE----QQR--------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLE 81 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHH----cCC--------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 58899999877776644443 211 2455899999999999999999999854
Q ss_pred -------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch---hhhhh
Q 041769 64 -------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL---HILLR 107 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~---~a~~r 107 (204)
.++.++.+.-.....+++++... ....|++|||+|.++. +++++
T Consensus 82 i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK 141 (527)
T PRK14969 82 IDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLK 141 (527)
T ss_pred HhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHH
Confidence 23445444333445566665543 2457999999999954 35555
No 82
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=7.3e-11 Score=105.44 Aligned_cols=91 Identities=22% Similarity=0.368 Sum_probs=63.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++.+.+.+...+. ... .+..+||+||+|||||++|+++|+.+.+
T Consensus 11 ~f~eivGq~~i~~~L~~~i~----~~r--------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 78 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALD----AGR--------INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVA 78 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHH----cCC--------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHH
Confidence 58999999877776644443 211 2445899999999999999999998753
Q ss_pred ---------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccchh
Q 041769 64 ---------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTLH 103 (204)
Q Consensus 64 ---------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~~ 103 (204)
+++.++.++..+...++++.... ....|++|||+|.++..
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~ 133 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA 133 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH
Confidence 24445554444455555554332 35679999999999443
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=5e-11 Score=107.28 Aligned_cols=95 Identities=18% Similarity=0.383 Sum_probs=65.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++|+|++.+...+.+.+. ... .+..+||+||+|+|||++|+.+|+.+++
T Consensus 14 ~f~divGQe~vv~~L~~~l~----~~r--------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~ 81 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALD----LGR--------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE 81 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHH----cCC--------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence 58999999877766644333 111 2455899999999999999999999965
Q ss_pred -------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch---hhhhh
Q 041769 64 -------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL---HILLR 107 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~---~a~~r 107 (204)
+++.++.++-.....+++++... ....|++|||+|.++. +++++
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLK 141 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK 141 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHH
Confidence 23445554323345566655443 2567999999999944 35544
No 84
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.31 E-value=8.3e-11 Score=94.37 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=42.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
..++||||||+|||||++++++++ |..+.+++...... ...+.+.......+|+|||++.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--~~~~~~~~~~~~dlliiDdi~~~ 109 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--FVPEVLEGMEQLSLVCIDNIECI 109 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--hhHHHHHHhhhCCEEEEeChhhh
Confidence 469999999999999999999876 44566666544221 11223333334468999999987
No 85
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=8.6e-11 Score=103.65 Aligned_cols=89 Identities=18% Similarity=0.436 Sum_probs=61.5
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++|+|++.++..+...+.. . ..+..+||||||||||||+|+++|+.+.+
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~----~--------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i 79 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQ----G--------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAV 79 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHH
Confidence 589999998776666554442 1 12344799999999999999999999853
Q ss_pred ------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccc
Q 041769 64 ------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLT 101 (204)
Q Consensus 64 ------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~ 101 (204)
.++.++.++......++++.... ....+++|||+|.++
T Consensus 80 ~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls 129 (504)
T PRK14963 80 RRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS 129 (504)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC
Confidence 25556655333344455543332 356799999999984
No 86
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=6.6e-11 Score=109.43 Aligned_cols=91 Identities=20% Similarity=0.361 Sum_probs=63.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++|+|++.+++.|...+. .. ..+..+||+||+|+|||++++.||+.+.+
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~----~~--------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~ 80 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALD----SG--------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVA 80 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHH----hC--------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHH
Confidence 58999999877776654443 11 12445899999999999999999999953
Q ss_pred ---------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccchh
Q 041769 64 ---------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTLH 103 (204)
Q Consensus 64 ---------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~~ 103 (204)
.++.++..+.....+++++.... ....|+||||+|.++..
T Consensus 81 ~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~ 135 (824)
T PRK07764 81 LAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ 135 (824)
T ss_pred HHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHH
Confidence 23445544434445555543322 36789999999999544
No 87
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=1.2e-10 Score=104.15 Aligned_cols=95 Identities=20% Similarity=0.445 Sum_probs=67.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC------------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN------------------ 62 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~------------------ 62 (204)
+|++++|++.+.+.+.+.+.. . ..+..+||+||+|+|||++|+.+|+.+.
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~----~--------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~ 81 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQ----G--------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKA 81 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHH
Confidence 589999998777666554442 1 1245689999999999999999999984
Q ss_pred ------CceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch---hhhhh
Q 041769 63 ------FDVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL---HILLR 107 (204)
Q Consensus 63 ------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~---~a~~r 107 (204)
.+++.++.++-.+...++++.... ....|++|||+|.++. +++++
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLK 141 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLK 141 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHH
Confidence 345566665434445566665553 2567999999999944 35554
No 88
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=2.9e-11 Score=107.13 Aligned_cols=90 Identities=19% Similarity=0.366 Sum_probs=61.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++.+...+...+. .. ..+..++|+||+|+|||++|+.+|+.+.+
T Consensus 14 ~f~diiGq~~~v~~L~~~i~----~~--------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~ 81 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALE----TQ--------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVA 81 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 58899999877766544333 11 12445899999999999999999998853
Q ss_pred -------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 64 -------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
.++.++...-.+..++++++... ....|++|||+|.++.
T Consensus 82 i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~ 133 (546)
T PRK14957 82 INNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK 133 (546)
T ss_pred HhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH
Confidence 34445543333334455554433 2567999999999954
No 89
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=2.5e-10 Score=105.05 Aligned_cols=95 Identities=20% Similarity=0.410 Sum_probs=63.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD---------------- 64 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~---------------- 64 (204)
+|++|+|++.++..+.+.+. ... .+..+||+||||||||++|+++|+.+++.
T Consensus 14 tFddIIGQe~Iv~~LknaI~----~~r--------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~ 81 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALT----QQR--------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE 81 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHH----hCC--------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence 58999999877766544332 211 24457999999999999999999999653
Q ss_pred --------eEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch---hhhhh
Q 041769 65 --------VYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL---HILLR 107 (204)
Q Consensus 65 --------~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~---~a~~r 107 (204)
++.++.++......+++++... ....|+||||+|.++. +++++
T Consensus 82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLK 141 (944)
T PRK14949 82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLK 141 (944)
T ss_pred HhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHH
Confidence 1223333222334455554433 2467999999999954 45555
No 90
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.27 E-value=7.7e-11 Score=109.77 Aligned_cols=86 Identities=20% Similarity=0.349 Sum_probs=60.8
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeecC
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLELT 71 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~~ 71 (204)
|+.++|.++...++.+.+. ...+.+++|+||||||||++++.+|..+ +.+++.++++
T Consensus 178 ~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~ 244 (821)
T CHL00095 178 LDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG 244 (821)
T ss_pred CCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH
Confidence 4556666655555544332 1234579999999999999999999987 4788999887
Q ss_pred CccC--------hHHHHHHHHhc--CCCeEEEEecCCcc
Q 041769 72 TFKE--------NMELRNMLIAT--KNKSILVVGDIDYL 100 (204)
Q Consensus 72 ~~~~--------~~~~~~~~~~~--~~~~il~iDeid~~ 100 (204)
.+.. ...+..++..+ ..+.||||||++.+
T Consensus 245 ~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l 283 (821)
T CHL00095 245 LLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTL 283 (821)
T ss_pred HHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHH
Confidence 6531 13456666654 35789999999876
No 91
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.27 E-value=7.7e-11 Score=93.50 Aligned_cols=63 Identities=19% Similarity=0.348 Sum_probs=47.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCccc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYLT 101 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~~ 101 (204)
+.+++|+||+|||||++|+++++.+ +.++++++++.+... ....+.......+|+|||++.+.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~lLvIDdi~~l~ 103 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA--DPEVLEGLEQADLVCLDDVEAIA 103 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh--HHHHHhhcccCCEEEEeChhhhc
Confidence 4569999999999999999999887 467778877665422 12344444556799999999873
No 92
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.27 E-value=1.1e-10 Score=108.79 Aligned_cols=93 Identities=15% Similarity=0.249 Sum_probs=69.9
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeecCCccC----h----HHHHHHHHhc---CCCeEEEEe
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLELTTFKE----N----MELRNMLIAT---KNKSILVVG 95 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~~~~~~----~----~~~~~~~~~~---~~~~il~iD 95 (204)
..+++|+||||||||++++.+|+.+ +..++.++++.+.. . ..++.++... ..+.|||||
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfID 287 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFID 287 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3568999999999999999999986 35677787776532 1 3566666655 357899999
Q ss_pred cCCccc-------------------------------h---------h-hhhhccccceeEecCCCCHHHHHHHHHHh
Q 041769 96 DIDYLT-------------------------------L---------H-ILLRSSCMDMHIHMSYCTPFRFKMLASNY 132 (204)
Q Consensus 96 eid~~~-------------------------------~---------~-a~~r~~R~~~~i~~~~p~~~~~~~i~~~~ 132 (204)
|++.+. . + ++.| ||. .|.++.|+..+...|++.+
T Consensus 288 Eih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 288 EAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred ChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHH
Confidence 999981 0 0 5666 896 6999999999887775433
No 93
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.7e-10 Score=103.45 Aligned_cols=95 Identities=19% Similarity=0.412 Sum_probs=65.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++.++..+...+. .. ..+..+|||||+|+|||++++++|+.+.+
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~----~~--------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~ 81 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAID----TG--------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVE 81 (576)
T ss_pred CHHHccCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHH
Confidence 58999999877776655443 11 12456899999999999999999999853
Q ss_pred -------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch---hhhhh
Q 041769 64 -------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL---HILLR 107 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~---~a~~r 107 (204)
+++.++..+..+..+++++.... ....|++|||+|.++. +++++
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk 141 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLK 141 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHH
Confidence 24445544433445565555443 2567999999999954 35554
No 94
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.24 E-value=1.1e-10 Score=100.80 Aligned_cols=98 Identities=19% Similarity=0.306 Sum_probs=66.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecCCccCh-------HHHHHHHHhcCCCeEEEEecCCccc----
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELTTFKEN-------MELRNMLIATKNKSILVVGDIDYLT---- 101 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~il~iDeid~~~---- 101 (204)
.+++||||||+|||+|++++++++ +..+++++...+... ..............+|+|||++.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~ 216 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER 216 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHH
Confidence 459999999999999999999987 567888876553211 0111222223456799999999761
Q ss_pred --------hh------------------------hhhhccccc--eeEecCCCCHHHHHHHHHHhhCCC
Q 041769 102 --------LH------------------------ILLRSSCMD--MHIHMSYCTPFRFKMLASNYFGIT 136 (204)
Q Consensus 102 --------~~------------------------a~~r~~R~~--~~i~~~~p~~~~~~~i~~~~~~~~ 136 (204)
++ .-++ +|+. ..+.+..|+.+++..++.......
T Consensus 217 ~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~-SRl~~g~~v~i~~pd~~~r~~il~~~~~~~ 284 (405)
T TIGR00362 217 TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLR-SRFEWGLVVDIEPPDLETRLAILQKKAEEE 284 (405)
T ss_pred HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhh-hhccCCeEEEeCCCCHHHHHHHHHHHHHHc
Confidence 00 1111 4776 468889999999888877665543
No 95
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=3.1e-10 Score=101.09 Aligned_cols=90 Identities=19% Similarity=0.417 Sum_probs=61.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++.....+.+.+. .. ..+.++||+||+|+|||++|+++|+.+.+
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~----~~--------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~ 81 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAIL----NN--------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHH----cC--------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 58899999877666544332 11 22456999999999999999999999842
Q ss_pred -------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 64 -------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
.++.++.++..+...++.++... ....+++|||+|.++.
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~ 133 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST 133 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH
Confidence 34445544333445566655433 2467999999999854
No 96
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.24 E-value=1e-10 Score=109.11 Aligned_cols=116 Identities=16% Similarity=0.261 Sum_probs=81.4
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeecC
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLELT 71 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~~ 71 (204)
++.++|.+....++.+.+.. .....++|+||||||||++++++|..+ +.+++.++++
T Consensus 177 l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~ 243 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 243 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehh
Confidence 56677776544444333221 113458999999999999999999998 6788888887
Q ss_pred CccCh--------HHHHHHHHhc---CCCeEEEEecCCccc-------------------------------hh------
Q 041769 72 TFKEN--------MELRNMLIAT---KNKSILVVGDIDYLT-------------------------------LH------ 103 (204)
Q Consensus 72 ~~~~~--------~~~~~~~~~~---~~~~il~iDeid~~~-------------------------------~~------ 103 (204)
.+... ..+..+|... ..+.||||||++.+. .+
T Consensus 244 ~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~ 323 (857)
T PRK10865 244 ALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYI 323 (857)
T ss_pred hhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHh
Confidence 75321 2456666553 467899999999881 00
Q ss_pred ----hhhhccccceeEecCCCCHHHHHHHHHHhh
Q 041769 104 ----ILLRSSCMDMHIHMSYCTPFRFKMLASNYF 133 (204)
Q Consensus 104 ----a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~ 133 (204)
++.| ||+. |.++.|+.++...+++.+.
T Consensus 324 ~~d~al~r--Rf~~-i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 324 EKDAALER--RFQK-VFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hhcHHHHh--hCCE-EEeCCCCHHHHHHHHHHHh
Confidence 5555 9974 8899999988777665443
No 97
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.23 E-value=4.6e-10 Score=94.17 Aligned_cols=59 Identities=14% Similarity=0.335 Sum_probs=42.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC-----CceEEeecCC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN-----FDVYDLELTT 72 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-----~~~~~~~~~~ 72 (204)
+|++++|++.++..+...+. . ....+++|+||||||||++|+++++.+. .+++.+++++
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~----~---------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVD----S---------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHh----C---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 47888888776666544332 1 1123599999999999999999999883 3456677654
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.9e-10 Score=97.87 Aligned_cols=90 Identities=13% Similarity=0.327 Sum_probs=60.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD---------------- 64 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~---------------- 64 (204)
+|++++|++.++..+...+. .. ..+.+++|+||||+|||++|+++|+.+.+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~----~~--------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c 81 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLR----MG--------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC 81 (397)
T ss_pred cHhhccChHHHHHHHHHHHH----hC--------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC
Confidence 58899999877766544333 21 124569999999999999999999998552
Q ss_pred ----------------eEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 65 ----------------VYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 65 ----------------~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
++.++.........++++.... ....+++|||+|.++-
T Consensus 82 ~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~ 141 (397)
T PRK14955 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI 141 (397)
T ss_pred CCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH
Confidence 2333332222334555544443 2567999999999954
No 99
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.22 E-value=1.4e-10 Score=106.46 Aligned_cols=93 Identities=18% Similarity=0.345 Sum_probs=66.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeecCCccCh--------HHHHHHHHhc--CCCeEEEEec
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLELTTFKEN--------MELRNMLIAT--KNKSILVVGD 96 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~il~iDe 96 (204)
+.+++|+||||||||+++++++... +..++.++++.+... ..+..++... ..+++|||||
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDE 286 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE 286 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEecc
Confidence 4568999999999999999999875 556666665544311 2234444433 3578999999
Q ss_pred CCcc--------------------------------ch----------hhhhhccccceeEecCCCCHHHHHHHHHHh
Q 041769 97 IDYL--------------------------------TL----------HILLRSSCMDMHIHMSYCTPFRFKMLASNY 132 (204)
Q Consensus 97 id~~--------------------------------~~----------~a~~r~~R~~~~i~~~~p~~~~~~~i~~~~ 132 (204)
++.+ |. .++.| ||+ .|.++.|+.++...|+..+
T Consensus 287 Ih~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 287 IHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHH
Confidence 9976 00 05555 996 5999999999887776643
No 100
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.22 E-value=1.1e-10 Score=109.16 Aligned_cols=93 Identities=19% Similarity=0.318 Sum_probs=68.6
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeecCCccCh--------HHHHHHHHhc---CCCeEEEEe
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLELTTFKEN--------MELRNMLIAT---KNKSILVVG 95 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~~~~~~~--------~~~~~~~~~~---~~~~il~iD 95 (204)
...++|+||||||||++++++|..+ +.+++.++++.+... ..+..++... ..+.|||||
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfID 273 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFID 273 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEec
Confidence 3558899999999999999999986 678888887765311 2445555544 357899999
Q ss_pred cCCccc-------------------------------hh----------hhhhccccceeEecCCCCHHHHHHHHHHh
Q 041769 96 DIDYLT-------------------------------LH----------ILLRSSCMDMHIHMSYCTPFRFKMLASNY 132 (204)
Q Consensus 96 eid~~~-------------------------------~~----------a~~r~~R~~~~i~~~~p~~~~~~~i~~~~ 132 (204)
|++.+. .. ++.| ||.. |.++.|+.++...+++.+
T Consensus 274 Eih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~~-i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 274 ELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALER--RFQP-VFVDEPTVEDTISILRGL 348 (852)
T ss_pred cHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHh--cCCE-EEeCCCCHHHHHHHHHHH
Confidence 999771 00 4455 8865 789999988877776644
No 101
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.21 E-value=8.8e-10 Score=93.21 Aligned_cols=88 Identities=22% Similarity=0.451 Sum_probs=60.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++.++..+.+.+. .. ..+..++||||||+|||++++++++.+..
T Consensus 12 ~~~~iig~~~~~~~l~~~~~----~~--------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~ 79 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIK----NG--------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKE 79 (355)
T ss_pred cHhhccCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 58899999888777655443 11 12456899999999999999999998742
Q ss_pred -------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCcc
Q 041769 64 -------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYL 100 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~ 100 (204)
+++.++.........+++++... ....+++|||+|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l 129 (355)
T TIGR02397 80 INSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML 129 (355)
T ss_pred HhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc
Confidence 34445544333334455555543 24569999999988
No 102
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.21 E-value=3.9e-10 Score=89.80 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=44.7
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
..+++|+||+|||||++++++++.+ +.++.++++..... .+.......+|+|||++.+
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~liiDdi~~l 102 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------AFDFDPEAELYAVDDVERL 102 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------HHhhcccCCEEEEeChhhc
Confidence 4679999999999999999999976 66777777755321 1233345679999999987
No 103
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=5.4e-10 Score=98.80 Aligned_cols=90 Identities=20% Similarity=0.388 Sum_probs=63.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC------------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN------------------ 62 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~------------------ 62 (204)
+|++++|++.+++.+...+. .. ..+..+|||||+|+|||++|+++++.+.
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~----~g--------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~ 79 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALD----NN--------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQS 79 (535)
T ss_pred CHHHccCcHHHHHHHHHHHH----cC--------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 58999999888776655443 11 1245589999999999999999999873
Q ss_pred ------CceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 63 ------FDVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 63 ------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
..++.++.++-.+...+++.+... ....|++|||+|.++.
T Consensus 80 ~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~ 131 (535)
T PRK08451 80 ALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK 131 (535)
T ss_pred HhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH
Confidence 134555544333445666666542 2467999999999954
No 104
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.20 E-value=6.9e-11 Score=101.80 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=66.2
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHH--hCCC-CCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccCh----
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRN--VGKA-WKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKEN---- 76 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~-~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~---- 76 (204)
.|+|++..++.+...+...+..-..... -... ...+++|+||||||||++|+++|..++.+++.++++.+...
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3788888888876665544332211000 0111 23569999999999999999999999999999998765421
Q ss_pred ----HHHHHHHHh------cCCCeEEEEecCCccc
Q 041769 77 ----MELRNMLIA------TKNKSILVVGDIDYLT 101 (204)
Q Consensus 77 ----~~~~~~~~~------~~~~~il~iDeid~~~ 101 (204)
..+...+.. ...+++|||||+|.++
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~ 186 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA 186 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence 112222222 1367999999999994
No 105
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.20 E-value=3.1e-10 Score=105.74 Aligned_cols=90 Identities=18% Similarity=0.380 Sum_probs=60.9
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCC---CCCce-eEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccC
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGK---AWKHS-YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKE 75 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~g-~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~ 75 (204)
+.|+|++.....+...+.... .|+ ..|.+ ++|+||+|||||++|++||+.+ +.+++.++++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRAR--------VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHh--------hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 457788777777766554321 122 11333 8899999999999999999988 46788899887643
Q ss_pred hHHHHHHH----------------Hh--cCCCeEEEEecCCcc
Q 041769 76 NMELRNML----------------IA--TKNKSILVVGDIDYL 100 (204)
Q Consensus 76 ~~~~~~~~----------------~~--~~~~~il~iDeid~~ 100 (204)
...+...+ .. ..+.+|++|||+|.+
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 22222111 11 134689999999999
No 106
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.20 E-value=2.1e-10 Score=100.26 Aligned_cols=96 Identities=21% Similarity=0.337 Sum_probs=63.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecCCccCh-------HHHHHHHHhcCCCeEEEEecCCccch---
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELTTFKEN-------MELRNMLIATKNKSILVVGDIDYLTL--- 102 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~il~iDeid~~~~--- 102 (204)
.+++||||||+|||+|++++++++ +..+++++...+... ..............+|+|||++.+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~ 228 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKER 228 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHH
Confidence 459999999999999999999998 456778777654211 11122223334677999999987611
Q ss_pred ---------h------------------------hhhhccccc--eeEecCCCCHHHHHHHHHHhhC
Q 041769 103 ---------H------------------------ILLRSSCMD--MHIHMSYCTPFRFKMLASNYFG 134 (204)
Q Consensus 103 ---------~------------------------a~~r~~R~~--~~i~~~~p~~~~~~~i~~~~~~ 134 (204)
+ .-++ +||. ..+.+..|+.+++..++.....
T Consensus 229 ~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~-SRl~~gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 229 TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLR-SRFEWGLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH-hHhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence 0 1112 3665 4677777888777777665543
No 107
>PRK05642 DNA replication initiation factor; Validated
Probab=99.20 E-value=3.4e-10 Score=90.81 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=45.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
..++||||+|+|||+|++++++++ +..+++++..++... ....+.......+|+|||++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--~~~~~~~~~~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--GPELLDNLEQYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--hHHHHHhhhhCCEEEEechhhh
Confidence 569999999999999999999765 677888887665422 1233334445568999999976
No 108
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=8.9e-10 Score=96.92 Aligned_cols=90 Identities=18% Similarity=0.370 Sum_probs=59.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++.+...+.+.+. .. ..+..+|||||+|+|||++|+.+|+.+++
T Consensus 14 ~f~diiGq~~i~~~L~~~i~----~~--------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~ 81 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVK----LQ--------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVE 81 (486)
T ss_pred cHHHccChHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHH
Confidence 47889999777666544443 11 12445889999999999999999998853
Q ss_pred -------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 64 -------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
.++.++.+.-.+...++.+.... ....+++|||+|.++.
T Consensus 82 i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 82 IDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK 133 (486)
T ss_pred HhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH
Confidence 23334443333334444443332 2567999999999944
No 109
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=9.9e-10 Score=94.22 Aligned_cols=97 Identities=21% Similarity=0.284 Sum_probs=66.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD---------------- 64 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~---------------- 64 (204)
.|++|+|++.+++.+...+..... .+...+...+.++||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 489999999888888777664322 1222333446779999999999999999999987442
Q ss_pred -------eEEeecCCc-cChHHHHHHHHhc------CCCeEEEEecCCcc
Q 041769 65 -------VYDLELTTF-KENMELRNMLIAT------KNKSILVVGDIDYL 100 (204)
Q Consensus 65 -------~~~~~~~~~-~~~~~~~~~~~~~------~~~~il~iDeid~~ 100 (204)
+..+..... .....+++++... ....|++|||+|.+
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m 129 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL 129 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc
Confidence 233333221 2335566666544 24569999999999
No 110
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.19 E-value=4.4e-10 Score=91.59 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=32.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTT 72 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~ 72 (204)
+..++|+||||||||++|+++|+.+|.+++.+++..
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~ 56 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDA 56 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCc
Confidence 345999999999999999999999999999987754
No 111
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=7.5e-10 Score=99.13 Aligned_cols=90 Identities=17% Similarity=0.317 Sum_probs=60.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD---------------- 64 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~---------------- 64 (204)
+|++|+|++.++..+...+. ... ....+||+||+|+|||++|+.+|+.+.+.
T Consensus 14 sf~dIiGQe~v~~~L~~ai~----~~r--------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQ----ENR--------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHH----cCC--------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 58899999877655544333 211 13569999999999999999999999642
Q ss_pred --------eEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 65 --------VYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 65 --------~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
++.++...-.....++.+.... ....|++|||+|.++.
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~ 133 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR 133 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH
Confidence 4555543323333444432221 2567999999999954
No 112
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.18 E-value=2.8e-11 Score=100.72 Aligned_cols=62 Identities=29% Similarity=0.521 Sum_probs=48.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCc-eEEeecCCcc-ChHHHHHHHHhc-------CCCeEEEEecCCcc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFD-VYDLELTTFK-ENMELRNMLIAT-------KNKSILVVGDIDYL 100 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~-------~~~~il~iDeid~~ 100 (204)
.++||||||||||++|+.|+.....+ +..+..+... ...+++.+|+.. .+..||||||++.+
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF 234 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF 234 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh
Confidence 49999999999999999999988654 3444444433 335677777776 36899999999999
No 113
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.17 E-value=2.2e-10 Score=106.77 Aligned_cols=91 Identities=15% Similarity=0.329 Sum_probs=62.6
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCC-CCCce-eEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChH
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGK-AWKHS-YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENM 77 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~g-~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~ 77 (204)
+.|+|++.....+.+.+..... .+.- ..|.| ++|+||||||||.+|++||+.+ ...++.++++.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~------gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARA------GLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhc------CCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 4677888777777666653321 1111 12444 8999999999999999999999 4578889987763322
Q ss_pred H-------------------HHHHHHhcCCCeEEEEecCCcc
Q 041769 78 E-------------------LRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 78 ~-------------------~~~~~~~~~~~~il~iDeid~~ 100 (204)
. +.+.+.. .+.++|+|||++.+
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhc
Confidence 1 2233332 46789999999998
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1e-09 Score=98.86 Aligned_cols=90 Identities=13% Similarity=0.331 Sum_probs=60.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD---------------- 64 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~---------------- 64 (204)
+|++++|++.++..+...+. .. ..+.++||+||+|+|||++|+.+|+.+.+.
T Consensus 14 ~f~eivGQe~i~~~L~~~i~----~~--------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLR----MD--------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHH----cC--------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 58899999877666543322 21 224569999999999999999999999652
Q ss_pred ----------------eEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 65 ----------------VYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 65 ----------------~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
+..++.........++++.... ....+++|||+|.++.
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~ 141 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST 141 (620)
T ss_pred ccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH
Confidence 2223332222334555554443 3567999999999954
No 115
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.16 E-value=6.5e-10 Score=103.97 Aligned_cols=90 Identities=18% Similarity=0.402 Sum_probs=61.3
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCC---CCc-eeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccC
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKA---WKH-SYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKE 75 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~-g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~ 75 (204)
+.|+|++...+.+...+..... |+. .|. .++|+||||||||++|++|++.+ +.+++.++++.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~--------gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRA--------GLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhc--------cCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 4577887777777666554321 211 123 48899999999999999999988 56889999887644
Q ss_pred hHHHHHHH----------------Hh--cCCCeEEEEecCCcc
Q 041769 76 NMELRNML----------------IA--TKNKSILVVGDIDYL 100 (204)
Q Consensus 76 ~~~~~~~~----------------~~--~~~~~il~iDeid~~ 100 (204)
.......+ .. ..+.++|+|||++.+
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC
Confidence 32222211 11 135679999999998
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.3e-09 Score=92.89 Aligned_cols=89 Identities=18% Similarity=0.456 Sum_probs=60.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC------------ceEEe
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF------------DVYDL 68 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~------------~~~~~ 68 (204)
+|++++|++...+.+.+.+. .+ ..+.+++||||||+|||++++++++.+.. .++.+
T Consensus 15 ~~~~iig~~~~~~~l~~~i~----~~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l 82 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIE----NN--------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL 82 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe
Confidence 58899999877666544443 21 12457999999999999999999998753 22333
Q ss_pred ecCCccChHHHHHHHHhc------CCCeEEEEecCCccc
Q 041769 69 ELTTFKENMELRNMLIAT------KNKSILVVGDIDYLT 101 (204)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~ 101 (204)
+.........+++++..+ ....+++|||+|.++
T Consensus 83 ~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~ 121 (367)
T PRK14970 83 DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS 121 (367)
T ss_pred ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC
Confidence 333323335566665543 245799999999884
No 117
>PRK06620 hypothetical protein; Validated
Probab=99.16 E-value=9.6e-10 Score=87.00 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=36.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
+.++||||||+|||||++++++..+..+.. .... . ... .....+++|||++.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~--~---~~~---~~~~d~lliDdi~~~ 97 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF--N---EEI---LEKYNAFIIEDIENW 97 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh--c---hhH---HhcCCEEEEeccccc
Confidence 569999999999999999999987643322 1110 0 011 124468999999976
No 118
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=1.3e-09 Score=95.17 Aligned_cols=90 Identities=21% Similarity=0.376 Sum_probs=60.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++.++..+.+.+. .+ ..+..+|||||||+|||++|+++|+.+..
T Consensus 15 ~~~diiGq~~~v~~L~~~i~----~~--------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALR----FN--------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHH----cC--------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 58999999877666544443 21 12456999999999999999999998843
Q ss_pred --------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 64 --------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 64 --------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
.++.++.....+...++.+.... ....+++|||+|.++-
T Consensus 83 ~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~ 135 (451)
T PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK 135 (451)
T ss_pred HHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH
Confidence 23344433333334444332222 3678999999999943
No 119
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=1.6e-09 Score=98.47 Aligned_cols=90 Identities=22% Similarity=0.452 Sum_probs=60.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD---------------- 64 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~---------------- 64 (204)
+|++++|++.+.+.+...+. .. ..+.++|||||+|+|||++|+++|+.+.+.
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~----~~--------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~ 83 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIK----SN--------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENV 83 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhh
Confidence 58899999877766655443 11 124568999999999999999999988542
Q ss_pred -----eEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 65 -----VYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 65 -----~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
++.++..+-.+...+++++... ....|++|||+|.++.
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~ 132 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK 132 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH
Confidence 2223332212234455554443 2567999999999953
No 120
>PRK12377 putative replication protein; Provisional
Probab=99.15 E-value=2e-10 Score=92.65 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=62.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccC--
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKE-- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~-- 75 (204)
+|+++....+....+...+..+...-. ....+++|+||||||||+||.++++.+ |.++..++..++..
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~-------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELM-------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHH-------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 577776544333334444444432211 113579999999999999999999998 67787777765432
Q ss_pred ------hHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 76 ------NMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 76 ------~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
.....+.+..+....+|+|||++..
T Consensus 145 ~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 145 HESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1123355666778889999999875
No 121
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.15 E-value=4.7e-10 Score=100.11 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=65.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecCCccCh-------HHHHHHHHhcCCCeEEEEecCCccch---
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELTTFKEN-------MELRNMLIATKNKSILVVGDIDYLTL--- 102 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~il~iDeid~~~~--- 102 (204)
+.++|||++|+|||+|++++++++ +..+++++...+... ..+......+....+|+|||++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 349999999999999999999987 567888877654211 11112222334568999999998810
Q ss_pred ---------h------------------------hhhhccccc--eeEecCCCCHHHHHHHHHHhhCCC
Q 041769 103 ---------H------------------------ILLRSSCMD--MHIHMSYCTPFRFKMLASNYFGIT 136 (204)
Q Consensus 103 ---------~------------------------a~~r~~R~~--~~i~~~~p~~~~~~~i~~~~~~~~ 136 (204)
+ .-++ +||. ..+.+..|+.+.+..|+.......
T Consensus 395 tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~-SRf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 395 TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLR-NRFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHH-hhhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 0 1122 3664 555778888888887777655433
No 122
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=1.6e-09 Score=96.77 Aligned_cols=95 Identities=20% Similarity=0.397 Sum_probs=63.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++.++..+...+. .+. .+..+|||||+|+|||++|+++|+.+..
T Consensus 14 ~f~diiGqe~iv~~L~~~i~----~~~--------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~ 81 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIE----SNK--------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKS 81 (563)
T ss_pred CHHHccCcHHHHHHHHHHHH----cCC--------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHH
Confidence 58999999887777655554 111 2456999999999999999999999854
Q ss_pred -------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch---hhhhh
Q 041769 64 -------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL---HILLR 107 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~---~a~~r 107 (204)
+++.++...-.....++++.... ....+++|||++.++- +++++
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK 141 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLK 141 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHH
Confidence 23333332222234555554322 3567999999999953 35555
No 123
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.15 E-value=1.2e-09 Score=102.06 Aligned_cols=92 Identities=14% Similarity=0.366 Sum_probs=60.7
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCC-CCc-eeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChH
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKA-WKH-SYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENM 77 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~ 77 (204)
+.|+|++.....+...+...... +.-+ .|. .++|+||||||||++|++|++.+ +.+++.++++.+....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~g------l~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~ 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAG------LSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhc------ccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh
Confidence 56788877777776666543210 0111 122 48999999999999999999987 4568888888764332
Q ss_pred HHHHHHH------------------hcCCCeEEEEecCCcc
Q 041769 78 ELRNMLI------------------ATKNKSILVVGDIDYL 100 (204)
Q Consensus 78 ~~~~~~~------------------~~~~~~il~iDeid~~ 100 (204)
.....+. ...+.++|+|||++.+
T Consensus 642 ~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred hHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC
Confidence 2222221 1124589999999988
No 124
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.13 E-value=2.6e-10 Score=94.82 Aligned_cols=98 Identities=21% Similarity=0.310 Sum_probs=65.5
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccC--
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKE-- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~-- 75 (204)
+|+++...+..+..+......|+.... . -+.+.|++|+||+|||||+|+.++|+++ |.++..+.++.+..
T Consensus 125 tf~~~~~~~~~~~~~~~~~~~fi~~~~---~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 125 SLADIDLDDRDRLDALMAALDFLEAYP---P--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred cHHHhcCCChHHHHHHHHHHHHHHHhh---c--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 356666554344444444444443211 0 1235789999999999999999999998 77888877765421
Q ss_pred -----hHHHHHHHHhcCCCeEEEEecCCccchh
Q 041769 76 -----NMELRNMLIATKNKSILVVGDIDYLTLH 103 (204)
Q Consensus 76 -----~~~~~~~~~~~~~~~il~iDeid~~~~~ 103 (204)
...+.+.+.......+|+|||+....++
T Consensus 200 k~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s 232 (306)
T PRK08939 200 KNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMS 232 (306)
T ss_pred HHHHhcCcHHHHHHHhcCCCEEEEecCCCcccc
Confidence 1234556666778889999999986443
No 125
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.13 E-value=7.7e-10 Score=87.39 Aligned_cols=124 Identities=22% Similarity=0.339 Sum_probs=100.3
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHH
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENME 78 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~ 78 (204)
+.+++|.+.+++.+.++...|..... ..++||||.-|||||++++|+-.++ |..++.++-.++..-..
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~p---------ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~ 129 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLP---------ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPD 129 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCc---------ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHH
Confidence 46788999999999999998876332 3569999999999999999999988 67899999999888888
Q ss_pred HHHHHHhcCCCeEEEEecCCcc----------------------------chh---------------------------
Q 041769 79 LRNMLIATKNKSILVVGDIDYL----------------------------TLH--------------------------- 103 (204)
Q Consensus 79 ~~~~~~~~~~~~il~iDeid~~----------------------------~~~--------------------------- 103 (204)
+.+.+...+..-|||.||+.-- |.+
T Consensus 130 l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveE 209 (287)
T COG2607 130 LVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEE 209 (287)
T ss_pred HHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHH
Confidence 8999999999999999998654 000
Q ss_pred hhhhccccceeEecCCCCHHHHHHHHHHhhC
Q 041769 104 ILLRSSCMDMHIHMSYCTPFRFKMLASNYFG 134 (204)
Q Consensus 104 a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~ 134 (204)
.+--+.||..-+.|..++..+...+...|..
T Consensus 210 KlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~ 240 (287)
T COG2607 210 KLSLSDRFGLWLSFYPCDQDEYLKIVDHYAK 240 (287)
T ss_pred hhchhhhcceeecccCCCHHHHHHHHHHHHH
Confidence 1222468888888888888888777776653
No 126
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.11 E-value=2.9e-10 Score=91.48 Aligned_cols=93 Identities=22% Similarity=0.355 Sum_probs=63.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccC--
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKE-- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~-- 75 (204)
+|+++....+....+...+..+..... ....+++|+|+||||||+|+.+++.++ |.+++.++..++..
T Consensus 70 tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 70 SFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence 577776554444444455554443211 112479999999999999999999998 77888888766531
Q ss_pred -------hHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 76 -------NMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 76 -------~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
.....+++.......+|+|||++..
T Consensus 143 ~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 143 KDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 1123355666667889999999986
No 127
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=3.2e-09 Score=95.39 Aligned_cols=89 Identities=18% Similarity=0.420 Sum_probs=62.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD---------------- 64 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~---------------- 64 (204)
+|++|+|++.++..+...+. .. ..+.++||+||+|+|||++|+++|+.+.+.
T Consensus 22 ~f~dliGq~~~v~~L~~~~~----~g--------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c 89 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFE----TG--------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG 89 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHH----cC--------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc
Confidence 58999999877777655443 11 124569999999999999999999988542
Q ss_pred -------------eEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccc
Q 041769 65 -------------VYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLT 101 (204)
Q Consensus 65 -------------~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~ 101 (204)
++.++..+..+...+++++... ....|++|||+|.++
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls 145 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS 145 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC
Confidence 2233333333445666665544 256899999999994
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=4.6e-09 Score=94.87 Aligned_cols=90 Identities=21% Similarity=0.369 Sum_probs=62.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++.+...+...+.. . ....++||+||+|+|||++|+++|+.+.+
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~----~--------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALIS----N--------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred cHhhccChHHHHHHHHHHHHc----C--------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 478999998777666544442 1 12356999999999999999999999865
Q ss_pred ---------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 64 ---------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 64 ---------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
.++.++.........+++++... ....|++|||+|.++.
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~ 135 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST 135 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH
Confidence 23334433323345666666554 2457999999999943
No 129
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.10 E-value=4e-10 Score=96.83 Aligned_cols=97 Identities=26% Similarity=0.358 Sum_probs=63.5
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHH-HH---hCCCC-CceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC---
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFY-RN---VGKAW-KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE--- 75 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~-~~---~~~~~-~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~--- 75 (204)
.++|+++.++.+...+..++..-... .. -++.. ..+++|+||||||||++|+++|..++.++..+++..+..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 45788888777766655444321110 00 01111 346999999999999999999999999998888766532
Q ss_pred -----hHHHHHHHHhc------CCCeEEEEecCCcc
Q 041769 76 -----NMELRNMLIAT------KNKSILVVGDIDYL 100 (204)
Q Consensus 76 -----~~~~~~~~~~~------~~~~il~iDeid~~ 100 (204)
...+...+... ..+++|+|||+|.+
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl 193 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKI 193 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchh
Confidence 12233333322 25679999999987
No 130
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=3.4e-09 Score=95.46 Aligned_cols=90 Identities=19% Similarity=0.399 Sum_probs=61.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++|+|++.++..+...+.. . ..+..+|||||+|+|||++++++|+.+++
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~----~--------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~ 81 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAE----G--------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCR 81 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHh----C--------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHH
Confidence 589999998877776444431 1 12345899999999999999999998743
Q ss_pred --------ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 64 --------DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 64 --------~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
.++.++.........++++.... ....|++|||+|.++.
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~ 134 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST 134 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH
Confidence 23334443333344555554432 3567999999999843
No 131
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.10 E-value=2e-09 Score=94.04 Aligned_cols=63 Identities=25% Similarity=0.570 Sum_probs=46.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecCCccCh---------HHHHHHHHhcCCCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELTTFKEN---------MELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
.+++|||++|+|||+|++++++++ +..+++++...+... ..+.+....+....+|+|||++.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l 218 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFL 218 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccc
Confidence 459999999999999999999965 467788877654211 122333334456779999999987
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=3.5e-09 Score=95.60 Aligned_cols=90 Identities=17% Similarity=0.456 Sum_probs=63.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC------------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN------------------ 62 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~------------------ 62 (204)
+|++|+|++.+...+...+. ... .+..+|||||+|+|||++|+.+|+.+.
T Consensus 15 ~f~~viGq~~~~~~L~~~i~----~~~--------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~ 82 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIA----TNK--------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCV 82 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHH----cCC--------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHH
Confidence 58999999877776655443 211 245599999999999999999999875
Q ss_pred -------CceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 63 -------FDVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 63 -------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
.+++.++..+......++.++..+ ....+++|||++.++.
T Consensus 83 ~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~ 135 (614)
T PRK14971 83 AFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ 135 (614)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH
Confidence 344555554433345666666443 2567999999999954
No 133
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.08 E-value=3e-09 Score=90.34 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=45.2
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC---------CceEEeecCCc
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN---------FDVYDLELTTF 73 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---------~~~~~~~~~~~ 73 (204)
+++++.++..+.+...+...... ..+..++++||||||||++++.+++.+. ..++++++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 56778887777776666654321 1235699999999999999999998763 46777776554
No 134
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.08 E-value=3.6e-09 Score=88.02 Aligned_cols=89 Identities=21% Similarity=0.304 Sum_probs=55.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC-----CceEEeecCCccC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN-----FDVYDLELTTFKE 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-----~~~~~~~~~~~~~ 75 (204)
+|++++|++++...+...+. .. ...+++||||||+|||++++++++.+. ..++.++.++...
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~----~~---------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~ 81 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVK----EK---------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG 81 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHh----CC---------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc
Confidence 46788888766666544432 11 123489999999999999999999873 2345555444332
Q ss_pred hHHHHHHHHh----c----CCCeEEEEecCCccch
Q 041769 76 NMELRNMLIA----T----KNKSILVVGDIDYLTL 102 (204)
Q Consensus 76 ~~~~~~~~~~----~----~~~~il~iDeid~~~~ 102 (204)
...+...+.. . ....+++|||+|.++.
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~ 116 (319)
T PRK00440 82 IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS 116 (319)
T ss_pred hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH
Confidence 2222222211 1 2356999999999843
No 135
>PRK09087 hypothetical protein; Validated
Probab=99.07 E-value=3.6e-09 Score=84.39 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=36.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
.++||||+|+|||||+++++...+..++. ...+.. ..+.... ..+|+|||++.+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~--~~~~~~-----~~~~~~~-~~~l~iDDi~~~ 99 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIH--PNEIGS-----DAANAAA-EGPVLIEDIDAG 99 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEec--HHHcch-----HHHHhhh-cCeEEEECCCCC
Confidence 49999999999999999999877555333 321111 1111111 258889999876
No 136
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.07 E-value=2.1e-09 Score=93.74 Aligned_cols=63 Identities=24% Similarity=0.549 Sum_probs=43.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecCCccCh-------HHHHHHHHhcC-CCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELTTFKEN-------MELRNMLIATK-NKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~il~iDeid~~ 100 (204)
.+++||||||+|||+|++++++++ +..+++++...+... ..+.+...... ...+|+|||++.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l 206 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFL 206 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhh
Confidence 459999999999999999999986 456777776553211 11112222222 4679999999965
No 137
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.8e-09 Score=88.58 Aligned_cols=63 Identities=27% Similarity=0.475 Sum_probs=50.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccCh----HHH----HHHHHhc------CCCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKEN----MEL----RNMLIAT------KNKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~------~~~~il~iDeid~~ 100 (204)
..+|+.||+|||||.||+.||+.++.|+...|+..+... .++ .++++++ +..+|++|||||.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKI 174 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKI 174 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhh
Confidence 459999999999999999999999999999998877421 233 3444444 26799999999999
No 138
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.04 E-value=2.6e-10 Score=87.17 Aligned_cols=65 Identities=20% Similarity=0.466 Sum_probs=51.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCC----ceEEeecCCccC----hHHHHHHHHhcC------CCeEEEEecCCccch
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNF----DVYDLELTTFKE----NMELRNMLIATK------NKSILVVGDIDYLTL 102 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~------~~~il~iDeid~~~~ 102 (204)
..++|+||+|+|||.+++++|+.+.. +++.+|++.+.. ...+...+.... ..+||++||||+...
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 34899999999999999999999995 999999999877 444444444432 346999999999855
No 139
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.1e-09 Score=99.69 Aligned_cols=86 Identities=21% Similarity=0.414 Sum_probs=62.3
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeecC
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLELT 71 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~~ 71 (204)
+|-|+|.++...++.+.+..-. ++.-+|+|+||+|||.++..+|... +..++.+|++
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g 235 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG 235 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH
Confidence 4667777766666655554222 2346789999999999999999987 5688999998
Q ss_pred CccCh--------HHHHHHHHhcC--CCeEEEEecCCcc
Q 041769 72 TFKEN--------MELRNMLIATK--NKSILVVGDIDYL 100 (204)
Q Consensus 72 ~~~~~--------~~~~~~~~~~~--~~~il~iDeid~~ 100 (204)
.+... ..+..++.... .+.||||||++.+
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHti 274 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTI 274 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 87543 33444444442 4899999999988
No 140
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.04 E-value=2e-10 Score=100.58 Aligned_cols=168 Identities=17% Similarity=0.330 Sum_probs=97.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD---------------- 64 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~---------------- 64 (204)
+|++++|++-+...+...+. .... ..+++|.||.||||||+||.+|+.+++.
T Consensus 14 ~F~evvGQe~v~~~L~nal~----~~ri--------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALE----NGRI--------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred cHHHhcccHHHHHHHHHHHH----hCcc--------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh
Confidence 58899999766666644443 2222 4569999999999999999999999643
Q ss_pred --------eEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCccch---hhhhhc-cccceeEecCCCCHHHH-
Q 041769 65 --------VYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDYLTL---HILLRS-SCMDMHIHMSYCTPFRF- 125 (204)
Q Consensus 65 --------~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~~~~---~a~~r~-~R~~~~i~~~~p~~~~~- 125 (204)
++.+|..+-.+..+++++.+.. .++.|++|||++.++. ++++.. .--..++.|.+-+.+..
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~K 161 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQK 161 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCc
Confidence 2223333334457777777776 2678999999999944 466663 11113333333333221
Q ss_pred --HHHHHH-----hhCCCCCCcHHHHHHHhhhCCCC-HHHHHHHHhcCC--CHHHHHHhHHHHHH
Q 041769 126 --KMLASN-----YFGITEHPLLTEIDELIEKANVT-LADVVEQLMRNK--VPEIALRGLTDVFK 180 (204)
Q Consensus 126 --~~i~~~-----~~~~~~~~~~~~~~~~~~~~~l~-~~~i~~~~~~~~--~~~~~~~~~~~~~~ 180 (204)
..|++| |.......+...+..++..+++. ..+...++.+.. ..++++..+.+.+.
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~ 226 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIA 226 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHH
Confidence 122222 22223334555566667666665 333444444432 33444444444443
No 141
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.04 E-value=2.4e-09 Score=93.29 Aligned_cols=63 Identities=25% Similarity=0.460 Sum_probs=45.0
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccCh-------HHHHHHHHhcCCCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKEN-------MELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
.+++||||||+|||+|++++++++ +..+++++...+... ......-.......+|+|||++.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l 214 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVF 214 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhh
Confidence 469999999999999999999987 678888776543211 111111112346679999999987
No 142
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.9e-09 Score=94.90 Aligned_cols=131 Identities=15% Similarity=0.286 Sum_probs=95.5
Q ss_pred CCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------ChHHHHHHHHhcC--CCeEEEEecCCccchh--
Q 041769 34 KAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ENMELRNMLIATK--NKSILVVGDIDYLTLH-- 103 (204)
Q Consensus 34 ~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~il~iDeid~~~~~-- 103 (204)
......+||+|+||+|||++++++|.++|.+++.++..++. .+..+...|..+. .++|||+-.+|.+..+
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 33445599999999999999999999999999999987763 2345566666664 7999999999998221
Q ss_pred ----------------------------------------hhhhccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHH
Q 041769 104 ----------------------------------------ILLRSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTE 143 (204)
Q Consensus 104 ----------------------------------------a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~ 143 (204)
+-.+ +-|-.+|.++.|+.++|..+++-|.....-.....
T Consensus 508 gged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~-~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~ 586 (953)
T KOG0736|consen 508 GGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQ-SLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVN 586 (953)
T ss_pred CchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHH-HhhhhhccCCCCCHHHHHHHHHHHHhccccchHHH
Confidence 2222 25668899999999999999987776543333334
Q ss_pred HHHHhhh-CCCCHHHHHHHHhcC
Q 041769 144 IDELIEK-ANVTLADVVEQLMRN 165 (204)
Q Consensus 144 ~~~~~~~-~~l~~~~i~~~~~~~ 165 (204)
...++.. -+|+.+++..++.+.
T Consensus 587 ~k~~a~~t~gfs~~~L~~l~~~~ 609 (953)
T KOG0736|consen 587 LKQLARKTSGFSFGDLEALVAHS 609 (953)
T ss_pred HHHHHHhcCCCCHHHHHHHhcCc
Confidence 4444443 577888877766443
No 143
>PRK08116 hypothetical protein; Validated
Probab=99.04 E-value=1.2e-09 Score=89.37 Aligned_cols=95 Identities=21% Similarity=0.348 Sum_probs=60.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccCh-
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKEN- 76 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~- 76 (204)
+|+++...+.. ..+...+..+...- ... ...+.|++|+|+||||||+||.++++++ +.+++.++.+.+...
T Consensus 83 tFdnf~~~~~~-~~a~~~a~~y~~~~---~~~-~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 83 TFENFLFDKGS-EKAYKIARKYVKKF---EEM-KKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred chhcccCChHH-HHHHHHHHHHHHHH---Hhh-ccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 46777644333 22334444443321 111 1224679999999999999999999987 778888887654211
Q ss_pred ---------HHHHHHHHhcCCCeEEEEecCCcc
Q 041769 77 ---------MELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 77 ---------~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
......+.......+|+|||++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e 190 (268)
T PRK08116 158 KSTYKSSGKEDENEIIRSLVNADLLILDDLGAE 190 (268)
T ss_pred HHHHhccccccHHHHHHHhcCCCEEEEecccCC
Confidence 122344555566779999999754
No 144
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.02 E-value=1.5e-08 Score=93.12 Aligned_cols=90 Identities=24% Similarity=0.422 Sum_probs=58.2
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeecCC
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLELTT 72 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~~~ 72 (204)
+.|++.++...+|...+...+.. -.....++++|+||||||++++.+.+++ ...++.+++..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 45667777777776666655432 1112335799999999999999998876 25567888754
Q ss_pred ccCh-----------------------HHHHHHHHhc----CCCeEEEEecCCcc
Q 041769 73 FKEN-----------------------MELRNMLIAT----KNKSILVVGDIDYL 100 (204)
Q Consensus 73 ~~~~-----------------------~~~~~~~~~~----~~~~il~iDeid~~ 100 (204)
+... ..+..+|... ....||+|||+|.+
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 3322 1222333322 12469999999998
No 145
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.02 E-value=1.6e-09 Score=90.10 Aligned_cols=64 Identities=22% Similarity=0.309 Sum_probs=47.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHH-------------------HHHhcCCCeEEEEecC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRN-------------------MLIATKNKSILVVGDI 97 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~il~iDei 97 (204)
+++++|.||||||||++++.+|..++.+++.+++.......++.. +..+...+.++++||+
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 566999999999999999999999999999998766432211100 0111135678999999
Q ss_pred Ccc
Q 041769 98 DYL 100 (204)
Q Consensus 98 d~~ 100 (204)
|..
T Consensus 144 n~a 146 (327)
T TIGR01650 144 DAG 146 (327)
T ss_pred hcc
Confidence 988
No 146
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.98 E-value=3.2e-08 Score=84.92 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=41.8
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecCCc
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELTTF 73 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~~~ 73 (204)
+.+++.++..+.+...+...... ..+..+++|||||+|||++++.+++.+ +..++++++...
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 34555555555555555433221 123459999999999999999999887 466778876543
No 147
>PRK08181 transposase; Validated
Probab=98.97 E-value=1.2e-09 Score=89.09 Aligned_cols=64 Identities=28% Similarity=0.520 Sum_probs=49.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccC-------hHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKE-------NMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
+.+++|+||||||||+|+.+++.++ |..+++++..++.. .....+.+.......+|+|||++..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccc
Confidence 4569999999999999999999765 77888887765422 1233455566677889999999876
No 148
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7.2e-09 Score=92.57 Aligned_cols=124 Identities=24% Similarity=0.348 Sum_probs=85.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC----ceEEeecCCccCh------HHHHHHHHhc--CCCeEEEEecCCcc----
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF----DVYDLELTTFKEN------MELRNMLIAT--KNKSILVVGDIDYL---- 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~--~~~~il~iDeid~~---- 100 (204)
+.+++|+||+|+|||.|+++++.++.. .+..++++.+... ..+..+|... ..|+||++|++|.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s 510 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS 510 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC
Confidence 445999999999999999999999954 4556777776533 2334444444 47999999999998
Q ss_pred ------------------------------------------chh-hhhhccccceeEecCCCCHHHHHHHHHHhhCCCC
Q 041769 101 ------------------------------------------TLH-ILLRSSCMDMHIHMSYCTPFRFKMLASNYFGITE 137 (204)
Q Consensus 101 ------------------------------------------~~~-a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~ 137 (204)
+++ .+..+.+|+.++.++.|...+|..|+...+....
T Consensus 511 ~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 511 SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 111 3344679999999999999999999887776542
Q ss_pred CC-cHHHHHHHh-hhCCCCHHHHHH
Q 041769 138 HP-LLTEIDELI-EKANVTLADVVE 160 (204)
Q Consensus 138 ~~-~~~~~~~~~-~~~~l~~~~i~~ 160 (204)
.. ....+..+. +..||.+-|+.-
T Consensus 591 ~~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 591 SDITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred hhhhhHHHHHHHHhcCCccchhHHH
Confidence 11 122233222 235676655544
No 149
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.8e-08 Score=83.11 Aligned_cols=88 Identities=17% Similarity=0.309 Sum_probs=60.5
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc-----eEEeecCCccChHH
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD-----VYDLELTTFKENME 78 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~~~~ 78 (204)
.+.+.+++..++...+...+... .|..+++|||||||||.+++.+++++... ++++|+..+.+...
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~---------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGE---------RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCC---------CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 45666777777766655544322 14459999999999999999999999443 78888876654322
Q ss_pred H-HHHHH------------------------hcCCCeEEEEecCCcc
Q 041769 79 L-RNMLI------------------------ATKNKSILVVGDIDYL 100 (204)
Q Consensus 79 ~-~~~~~------------------------~~~~~~il~iDeid~~ 100 (204)
+ .+++. ......|+++||+|.+
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 1 22222 2234689999999998
No 150
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.96 E-value=4.5e-10 Score=82.62 Aligned_cols=62 Identities=26% Similarity=0.417 Sum_probs=46.9
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHh---------------cCCCeEEEEecCCcc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIA---------------TKNKSILVVGDIDYL 100 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~il~iDeid~~ 100 (204)
+++|+||||+|||++++.+|+.++.++..+++.......++...... ...+.+++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRA 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccC
Confidence 48999999999999999999999999999998876554433211110 015789999999987
No 151
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.96 E-value=3.3e-09 Score=86.02 Aligned_cols=68 Identities=28% Similarity=0.460 Sum_probs=51.5
Q ss_pred CCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccCh-------HHHHH-HHHhcCCCeEEEEecCCccchh
Q 041769 36 WKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKEN-------MELRN-MLIATKNKSILVVGDIDYLTLH 103 (204)
Q Consensus 36 ~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~il~iDeid~~~~~ 103 (204)
.+.+++|+||||||||+||-||+.++ |.++..++..++... ..... +........+|+|||+.....+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~ 182 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFS 182 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCC
Confidence 46789999999999999999999998 788888888775321 12222 2333667889999999987443
No 152
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.94 E-value=5.3e-09 Score=76.10 Aligned_cols=64 Identities=31% Similarity=0.541 Sum_probs=48.6
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHH-----------HHHhcCCCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRN-----------MLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~il~iDeid~~ 100 (204)
+.+++++||||+|||++++.+++.+ +.+++.++............ .......+.++++||++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh
Confidence 4569999999999999999999998 88898888876543322221 1122246789999999975
No 153
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.93 E-value=9.7e-09 Score=91.48 Aligned_cols=59 Identities=20% Similarity=0.358 Sum_probs=41.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeec
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLEL 70 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~ 70 (204)
+|++++|++...+.+...+ . -+.+.+++|+||||||||++|+++.+.. +.+++.+++
T Consensus 63 ~f~~iiGqs~~i~~l~~al---~----------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~ 129 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAAL---C----------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDA 129 (531)
T ss_pred CHHHeeCcHHHHHHHHHHH---h----------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcc
Confidence 4778888876665553221 0 1224569999999999999999998642 356788886
Q ss_pred CC
Q 041769 71 TT 72 (204)
Q Consensus 71 ~~ 72 (204)
..
T Consensus 130 ~~ 131 (531)
T TIGR02902 130 TT 131 (531)
T ss_pred cc
Confidence 53
No 154
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.92 E-value=3.2e-09 Score=76.49 Aligned_cols=64 Identities=27% Similarity=0.466 Sum_probs=46.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCc---eEEeecCCccC--------------------hHHHHHHHHhcC--CCeE
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFD---VYDLELTTFKE--------------------NMELRNMLIATK--NKSI 91 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~---~~~~~~~~~~~--------------------~~~~~~~~~~~~--~~~i 91 (204)
+..++|+||||||||++++.+++.+... ++.++...... .......+..+. .+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3469999999999999999999999775 77777665321 112222233322 3499
Q ss_pred EEEecCCcc
Q 041769 92 LVVGDIDYL 100 (204)
Q Consensus 92 l~iDeid~~ 100 (204)
|++||++.+
T Consensus 82 iiiDei~~~ 90 (148)
T smart00382 82 LILDEITSL 90 (148)
T ss_pred EEEECCccc
Confidence 999999998
No 155
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.91 E-value=5.9e-08 Score=86.67 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=63.8
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHH
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENME 78 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~ 78 (204)
|+.++|.+....++.+.+..... ....++|+|++|||||++|++|.... +.+++.+|+..+.. ..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-~~ 262 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-TL 262 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-HH
Confidence 56778887777776666554432 13349999999999999999999876 46899999988743 22
Q ss_pred HHH-HHH-----------------hcCCCeEEEEecCCccchh
Q 041769 79 LRN-MLI-----------------ATKNKSILVVGDIDYLTLH 103 (204)
Q Consensus 79 ~~~-~~~-----------------~~~~~~il~iDeid~~~~~ 103 (204)
+.. +|. ....++.|||||++.++..
T Consensus 263 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~ 305 (534)
T TIGR01817 263 LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA 305 (534)
T ss_pred HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHH
Confidence 222 221 1135689999999999443
No 156
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.89 E-value=4.2e-08 Score=88.83 Aligned_cols=60 Identities=18% Similarity=0.400 Sum_probs=41.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeec
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLEL 70 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~ 70 (204)
+|++++|++.....+.+.+ ..+.+.+++|+||||||||++|+++.+.. +.+++.++.
T Consensus 152 ~~~~iiGqs~~~~~l~~~i-------------a~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~ 218 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKV-------------ASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDG 218 (615)
T ss_pred cHHhceeCcHHHHHHHHHH-------------hcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEec
Confidence 4677778776655543222 11224569999999999999999998766 245777776
Q ss_pred CCc
Q 041769 71 TTF 73 (204)
Q Consensus 71 ~~~ 73 (204)
..+
T Consensus 219 ~~l 221 (615)
T TIGR02903 219 TTL 221 (615)
T ss_pred hhc
Confidence 554
No 157
>PRK06921 hypothetical protein; Provisional
Probab=98.87 E-value=1.4e-08 Score=82.87 Aligned_cols=63 Identities=29% Similarity=0.335 Sum_probs=45.6
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc----CCceEEeecCCccCh-----HHHHHHHHhcCCCeEEEEecCCc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL----NFDVYDLELTTFKEN-----MELRNMLIATKNKSILVVGDIDY 99 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~il~iDeid~ 99 (204)
..+++|+||||+|||+|+.++|+++ |..+++++..++... ....+.+.......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4679999999999999999999987 567777776543211 11223344556778999999953
No 158
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.86 E-value=1.9e-09 Score=82.89 Aligned_cols=65 Identities=28% Similarity=0.502 Sum_probs=47.5
Q ss_pred CCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCcc-------ChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 36 WKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFK-------ENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 36 ~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
.+.+++|+||||||||++|.++++++ |.++..++.+++. ......+.+.......+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence 35689999999999999999999877 8888888877652 12233445555567789999999876
No 159
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.6e-08 Score=86.44 Aligned_cols=61 Identities=28% Similarity=0.467 Sum_probs=40.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc---CC--ceEEeecCCccC-------hHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL---NF--DVYDLELTTFKE-------NMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~---~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
.++||||+|+|||||++|++.+. +. .+++++...... ...+.+.-..+ .-.+++|||++.+
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l 187 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFL 187 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHh
Confidence 39999999999999999999988 33 455554433211 11111222223 4569999999998
No 160
>PHA02244 ATPase-like protein
Probab=98.85 E-value=1.2e-08 Score=86.20 Aligned_cols=64 Identities=22% Similarity=0.389 Sum_probs=46.5
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCC----c----cChHHH--HHHHHhcCCCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTT----F----KENMEL--RNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~----~----~~~~~~--~~~~~~~~~~~il~iDeid~~ 100 (204)
+..++|+||||||||++|+++|+.++.+++.++... + .....+ ...+.+...+++++|||++.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a 192 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDAS 192 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcC
Confidence 345999999999999999999999999999887321 0 000111 123333467899999999976
No 161
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.84 E-value=1.6e-08 Score=80.90 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=55.1
Q ss_pred CCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHhc-CCCeEEEEecCCcc
Q 041769 36 WKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIAT-KNKSILVVGDIDYL 100 (204)
Q Consensus 36 ~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~iDeid~~ 100 (204)
...|-.++||+|||||++++.+|+.+|..++.++.+.......+.+++... ..++++++||++.+
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl 96 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRL 96 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCS
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhh
Confidence 346677999999999999999999999999999999988888888998776 47889999999999
No 162
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.84 E-value=9e-09 Score=80.32 Aligned_cols=47 Identities=30% Similarity=0.526 Sum_probs=34.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+|++|.|++..|..+.-... | +.+++++||||||||++|+.+...++
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 58999999888877632222 1 35699999999999999999999884
No 163
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.82 E-value=2e-08 Score=84.28 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=47.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccCh---------HHHHHHHHhcCCCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKEN---------MELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
.+++||||+|||||+|+.++|+++ |..+++++...+... ......+.......+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCC
Confidence 679999999999999999999998 778888887664211 111222455556789999999876
No 164
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=1.6e-06 Score=72.45 Aligned_cols=90 Identities=19% Similarity=0.328 Sum_probs=60.5
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC--------ceEEeec-C
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF--------DVYDLEL-T 71 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--------~~~~~~~-~ 71 (204)
+|++++|++.+++.+.+.+. .+ ..+..++|+||+|+|||++|+.+|+.+-+ .+..+.. .
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~----~~--------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII----KN--------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH----cC--------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 58999999877777655542 11 22456899999999999999999998622 3334433 1
Q ss_pred C-ccChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 72 T-FKENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 72 ~-~~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
+ -.....++++.... ....+++||++|.++.
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~ 107 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE 107 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH
Confidence 1 12234566655533 2567999999999944
No 165
>PRK06526 transposase; Provisional
Probab=98.81 E-value=3.4e-09 Score=85.95 Aligned_cols=64 Identities=23% Similarity=0.406 Sum_probs=46.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccC-------hHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKE-------NMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
+.+++|+||||||||+++.+|+..+ |..+...++..+.. ...+...+.......+|+|||++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 4569999999999999999999876 66776665554321 1123344555567789999999976
No 166
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.81 E-value=1.9e-07 Score=85.07 Aligned_cols=90 Identities=19% Similarity=0.246 Sum_probs=61.1
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC---CceEEeecCCccChHH
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTTFKENME 78 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~~~~~~~~~~ 78 (204)
|++++|.+.....+.+.+..... ....++|+|++||||+++|++|..... .+++.+|+..+....-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~ 392 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAK-----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEAL 392 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHH
Confidence 56666666555555444443321 133499999999999999999988763 6899999988754222
Q ss_pred HHHHHHh--------------cCCCeEEEEecCCccch
Q 041769 79 LRNMLIA--------------TKNKSILVVGDIDYLTL 102 (204)
Q Consensus 79 ~~~~~~~--------------~~~~~il~iDeid~~~~ 102 (204)
..+.|.. ...++.|||||++.++.
T Consensus 393 ~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~ 430 (638)
T PRK11388 393 AEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP 430 (638)
T ss_pred HHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH
Confidence 2233331 13568999999999933
No 167
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.80 E-value=1.1e-07 Score=79.98 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=47.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHH------HHHHH--Hh----cC---CC---eEEEEecCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENME------LRNML--IA----TK---NK---SILVVGDID 98 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~------~~~~~--~~----~~---~~---~il~iDeid 98 (204)
+.+++|.||||+|||++++.+|+.++.+++.+++.......+ +.... .. .. .. +++++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 566999999999999999999999999999999876433222 12111 00 01 12 399999999
Q ss_pred cc
Q 041769 99 YL 100 (204)
Q Consensus 99 ~~ 100 (204)
..
T Consensus 123 ra 124 (329)
T COG0714 123 RA 124 (329)
T ss_pred cC
Confidence 98
No 168
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.79 E-value=2.7e-07 Score=77.60 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=57.6
Q ss_pred cCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHH-
Q 041769 6 AMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRN- 81 (204)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~- 81 (204)
+|.+.....+.+.+..... ....|+|+|++||||+++|++|-... +.+++.+|++.+... .+..
T Consensus 2 iG~S~~m~~~~~~~~~~a~-----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~-~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAP-----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSEN-LLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChH-HHHHH
Confidence 4555555555555543321 13449999999999999999998766 368999999876432 2222
Q ss_pred HHH-----------------hcCCCeEEEEecCCccchh
Q 041769 82 MLI-----------------ATKNKSILVVGDIDYLTLH 103 (204)
Q Consensus 82 ~~~-----------------~~~~~~il~iDeid~~~~~ 103 (204)
+|. ....++.|||||++.++..
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~ 108 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLL 108 (329)
T ss_pred HhccccccccCcccccCCchhhCCCCEEEeCChHhCCHH
Confidence 221 1235789999999999443
No 169
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.79 E-value=1.5e-08 Score=84.38 Aligned_cols=65 Identities=23% Similarity=0.443 Sum_probs=51.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC------------------------CceEEeecCCccCh----HHHHHHHHhc----
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN------------------------FDVYDLELTTFKEN----MELRNMLIAT---- 86 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~------------------------~~~~~~~~~~~~~~----~~~~~~~~~~---- 86 (204)
.+||+||||+|||++|.++|+.+. ..++.+++++.... ..++++....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~ 105 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESP 105 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCC
Confidence 599999999999999999999997 68889999887652 3344443333
Q ss_pred --CCCeEEEEecCCccchh
Q 041769 87 --KNKSILVVGDIDYLTLH 103 (204)
Q Consensus 87 --~~~~il~iDeid~~~~~ 103 (204)
....+++|||+|.++.+
T Consensus 106 ~~~~~kviiidead~mt~~ 124 (325)
T COG0470 106 LEGGYKVVIIDEADKLTED 124 (325)
T ss_pred CCCCceEEEeCcHHHHhHH
Confidence 24689999999999553
No 170
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.78 E-value=2.3e-08 Score=76.17 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=57.6
Q ss_pred cCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC---CceEEeecCCccChHHHHHH
Q 041769 6 AMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTTFKENMELRNM 82 (204)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~~~~~~~~~~~~~~ 82 (204)
+|.+....++.+.+..... .+..|+++|++||||+.+|++|-.... .+++.++++.+....--.++
T Consensus 2 iG~s~~m~~~~~~~~~~a~-----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAAS-----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp S--SHHHHHHHHHHHHHTT-----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhC-----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 4555555565555554432 134599999999999999999999763 68999999987544323344
Q ss_pred HHhc-----------------CCCeEEEEecCCccchh
Q 041769 83 LIAT-----------------KNKSILVVGDIDYLTLH 103 (204)
Q Consensus 83 ~~~~-----------------~~~~il~iDeid~~~~~ 103 (204)
|... ..++.|+|||++.++..
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~ 108 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPE 108 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HH
T ss_pred hccccccccccccccCCceeeccceEEeecchhhhHHH
Confidence 4321 25789999999999543
No 171
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.77 E-value=4.9e-09 Score=75.68 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=40.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHH--HHh-------c---CCCeEEEEecCCcc---chh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNM--LIA-------T---KNKSILVVGDIDYL---TLH 103 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~---~~~~il~iDeid~~---~~~ 103 (204)
++||+|+||+|||++++++|+.++..+..+++..-....++... +.. . -...++++||+... +.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappktQs 80 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPKTQS 80 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HHHHH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHHHHH
Confidence 48999999999999999999999999998887532222222100 000 0 12469999999998 445
Q ss_pred hhhh
Q 041769 104 ILLR 107 (204)
Q Consensus 104 a~~r 107 (204)
+++.
T Consensus 81 AlLe 84 (131)
T PF07726_consen 81 ALLE 84 (131)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 172
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.77 E-value=1.4e-07 Score=83.79 Aligned_cols=90 Identities=17% Similarity=0.282 Sum_probs=63.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENM 77 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~ 77 (204)
+|++++|.+.....+.+.+..+... ...++++|++||||+.+|++|-... +.+++.+|+..+.. .
T Consensus 210 ~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e-~ 277 (526)
T TIGR02329 210 RLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE-S 277 (526)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh-h
Confidence 3677888877766666655544321 2349999999999999999998765 56899999987643 2
Q ss_pred HHHH-HHH------------------hcCCCeEEEEecCCccch
Q 041769 78 ELRN-MLI------------------ATKNKSILVVGDIDYLTL 102 (204)
Q Consensus 78 ~~~~-~~~------------------~~~~~~il~iDeid~~~~ 102 (204)
.+.. +|. ....++.|||||++.+..
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~ 321 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL 321 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCH
Confidence 2222 222 113467899999999943
No 173
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.77 E-value=2.2e-07 Score=82.72 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=62.9
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHh-----------cCCceEEeec
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY-----------LNFDVYDLEL 70 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~-----------~~~~~~~~~~ 70 (204)
|++++|.+...+.+.+.+..+... ...++++|++||||+.+|++|-.. .+.+++.+|+
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inC 286 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNC 286 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeec
Confidence 667888877666665555543221 334999999999999999999887 3568999999
Q ss_pred CCccChHHHHH-HHH------------------hcCCCeEEEEecCCccchh
Q 041769 71 TTFKENMELRN-MLI------------------ATKNKSILVVGDIDYLTLH 103 (204)
Q Consensus 71 ~~~~~~~~~~~-~~~------------------~~~~~~il~iDeid~~~~~ 103 (204)
+.+... .+.. +|. ....++.|||||++.+...
T Consensus 287 aal~e~-lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~ 337 (538)
T PRK15424 287 GAIAES-LLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 337 (538)
T ss_pred ccCChh-hHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHH
Confidence 887532 2222 221 1235678999999999443
No 174
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.77 E-value=4.9e-08 Score=82.02 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=36.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.|++++|++..+..+.-.+.. +...|+||+|+||+|||++++++++.++
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP 54 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCC
Confidence 477888888777765322110 1124699999999999999999999984
No 175
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.77 E-value=5e-07 Score=75.94 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=63.9
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC---CceEEeecCCccChHH
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTTFKENME 78 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~~~~~~~~~~ 78 (204)
+++++|.+.....+.+.+..... ....|+++|++||||+++|++|-.... .+++.+++..+.. ..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~-----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HH
Confidence 57888888777777666665432 134499999999999999999987653 5899999988643 22
Q ss_pred HHHHH-H-----------------hcCCCeEEEEecCCccch
Q 041769 79 LRNML-I-----------------ATKNKSILVVGDIDYLTL 102 (204)
Q Consensus 79 ~~~~~-~-----------------~~~~~~il~iDeid~~~~ 102 (204)
+...+ . ....++.|+|||++.+..
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~ 114 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM 114 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH
Confidence 32221 1 123568899999999943
No 176
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.75 E-value=1.8e-08 Score=86.22 Aligned_cols=70 Identities=19% Similarity=0.324 Sum_probs=51.9
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhC-CCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCc
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVG-KAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTF 73 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~ 73 (204)
.++|+++.+..+...+...+........+. -..+.+++|+||||||||+++++||..++.+++.+++..+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 478888888888776665544332211111 1235789999999999999999999999999999997644
No 177
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.6e-08 Score=85.91 Aligned_cols=63 Identities=21% Similarity=0.431 Sum_probs=50.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC----hHHHHHH----HHhc------CCCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----NMELRNM----LIAT------KNKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~------~~~~il~iDeid~~ 100 (204)
..+||.||+|+|||.|++.||+.++.|+..+|+..+.. ..++..+ +..+ .+.+|+||||+|.+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi 303 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKI 303 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhh
Confidence 35999999999999999999999999999999887742 1233333 3333 36799999999999
No 178
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.72 E-value=3.5e-07 Score=84.05 Aligned_cols=87 Identities=17% Similarity=0.283 Sum_probs=59.9
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHH
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENME 78 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~ 78 (204)
|++++|.+.....+.+.+..... ....++++|++|||||++|++|.... +.+++.+++..+... .
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~-----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~-~ 442 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQ-----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG-L 442 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh-H
Confidence 56677777666666555554322 12359999999999999999998865 568999998876321 1
Q ss_pred HH-------------------HHHHhcCCCeEEEEecCCccc
Q 041769 79 LR-------------------NMLIATKNKSILVVGDIDYLT 101 (204)
Q Consensus 79 ~~-------------------~~~~~~~~~~il~iDeid~~~ 101 (204)
+. ..+ ....++.|||||++.+.
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~l-e~a~~GtL~Ldei~~L~ 483 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRF-ELADKSSLFLDEVGDMP 483 (686)
T ss_pred hhhhhcCcccccccccccchhhHH-HhcCCCeEEEechhhCC
Confidence 11 112 22356899999999983
No 179
>PRK08118 topology modulation protein; Reviewed
Probab=98.71 E-value=1.1e-07 Score=72.41 Aligned_cols=93 Identities=18% Similarity=0.117 Sum_probs=63.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEeecCC------ccChHHHHHHHHhcCCCeEEEEecCCccchhhhhhccccc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTT------FKENMELRNMLIATKNKSILVVGDIDYLTLHILLRSSCMD 112 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~il~iDeid~~~~~a~~r~~R~~ 112 (204)
.++++||||+||||+++.|+..++.+++.++.-- .....+...++.......-.+||....-++...+ .++|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~wVidG~~~~~~~~~l--~~~d 80 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKEDEWIIDGNYGGTMDIRL--NAAD 80 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcCCCEEEeCCcchHHHHHH--HhCC
Confidence 3899999999999999999999999988877322 1223344444444322233678886554443222 3789
Q ss_pred eeEecCCCCHHHHHHHHHHhh
Q 041769 113 MHIHMSYCTPFRFKMLASNYF 133 (204)
Q Consensus 113 ~~i~~~~p~~~~~~~i~~~~~ 133 (204)
..|.+..|...-...+..+.+
T Consensus 81 ~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 81 TIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred EEEEEeCCHHHHHHHHHHHHH
Confidence 999999998877766666654
No 180
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=2.9e-06 Score=72.00 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=36.1
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
|++++|+......+...+. ... .+..++|+||+|+|||++|+.+|+.+..
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~----~gr--------l~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYR----EGK--------LHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred hhhccCcHHHHHHHHHHHH----cCC--------CCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 5677888766655543333 111 2456999999999999999999999844
No 181
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=3e-06 Score=72.22 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=37.5
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+|++++|++..++.+.+.+.. . ..+.++||+||+|+||+++|.++|+.+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~----~--------rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRS----G--------RLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred chhhccChHHHHHHHHHHHHc----C--------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 467888988777766544432 1 225569999999999999999999988
No 182
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.70 E-value=4.3e-07 Score=80.88 Aligned_cols=90 Identities=13% Similarity=0.222 Sum_probs=61.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENM 77 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~ 77 (204)
+|++++|.+....++.+.+..... ....++++|++||||+++|+++-... ..+++.++++.+...
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~-----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~- 269 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAM-----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD- 269 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH-
Confidence 477888887766666555543321 12349999999999999999986654 358899999886532
Q ss_pred HHH-HHHH-----------------hcCCCeEEEEecCCccch
Q 041769 78 ELR-NMLI-----------------ATKNKSILVVGDIDYLTL 102 (204)
Q Consensus 78 ~~~-~~~~-----------------~~~~~~il~iDeid~~~~ 102 (204)
.+. .+|. ....++.|+|||++.++.
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~ 312 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP 312 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH
Confidence 222 2222 113467899999999943
No 183
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.70 E-value=2.9e-07 Score=77.72 Aligned_cols=49 Identities=24% Similarity=0.366 Sum_probs=37.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.|+.++|+++.|..+...+.. +.-.|++|.|++|||||+++++++..+.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 378889998887776444331 2235799999999999999999988873
No 184
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.70 E-value=3.1e-08 Score=83.41 Aligned_cols=61 Identities=25% Similarity=0.384 Sum_probs=47.6
Q ss_pred cc-cccCChhHHHHHHHHHHHHHHhHHHHHHhCC-CCCceeEEECCCCCcHHHHHHHHHHhcCC-------ceEEeec
Q 041769 2 FD-TLAMDSNMKQMIMDDLERFVKRKEFYRNVGK-AWKHSYFLYGPPGTGKSSLIAAMTNYLNF-------DVYDLEL 70 (204)
Q Consensus 2 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~g~ll~Gp~GtGKT~la~~la~~~~~-------~~~~~~~ 70 (204)
|+ +++|+++.+.++.+.+..... |. ..++.++|+||||+||||+|++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 45 899999998888776665432 22 22456899999999999999999999976 7777765
No 185
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.68 E-value=6.5e-07 Score=79.60 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=59.9
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHH
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMEL 79 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~ 79 (204)
.+++|.+.....+.+.+..... .+..++|+|++||||+++|++|.... +.+++.+|+..+... .+
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~-----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~-~~ 254 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAA-----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES-LA 254 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH-HH
Confidence 4566666665555555554321 13459999999999999999999876 468999999887432 22
Q ss_pred H-HHHH-----------------hcCCCeEEEEecCCccch
Q 041769 80 R-NMLI-----------------ATKNKSILVVGDIDYLTL 102 (204)
Q Consensus 80 ~-~~~~-----------------~~~~~~il~iDeid~~~~ 102 (204)
. ++|. ....++.|||||++.+..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~ 295 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL 295 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH
Confidence 2 2222 123567899999999943
No 186
>PHA00729 NTP-binding motif containing protein
Probab=98.68 E-value=1.6e-07 Score=74.41 Aligned_cols=88 Identities=14% Similarity=0.284 Sum_probs=53.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCce----------------EEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc--
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDV----------------YDLELTTFKENMELRNMLIATKNKSILVVGDIDYL-- 100 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~-- 100 (204)
.++++|+|||||||+|.+|+..++..+ +.++...+. ..+...+.......+|+|||+..-
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll--~~L~~a~~~~~~~dlLIIDd~G~~~~ 96 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDAL--EKIQDAIDNDYRIPLIIFDDAGIWLS 96 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHH--HHHHHHHhcCCCCCEEEEeCCchhhc
Confidence 599999999999999999999875322 222222111 112222222223468999995443
Q ss_pred -------------chhhhhhccccceeEecCCCCHHHHHHHHH
Q 041769 101 -------------TLHILLRSSCMDMHIHMSYCTPFRFKMLAS 130 (204)
Q Consensus 101 -------------~~~a~~r~~R~~~~i~~~~p~~~~~~~i~~ 130 (204)
.++.++|+ |.+. +.+..+++......++
T Consensus 97 ~~~wh~~~~~~yf~L~~aLrS-R~~l-~il~~ls~edL~~~Lr 137 (226)
T PHA00729 97 KYVWYEDYMKTFYKIYALIRT-RVSA-VIFTTPSPEDLAFYLR 137 (226)
T ss_pred ccchhhhccchHHHHHHHHHh-hCcE-EEEecCCHHHHHHHHH
Confidence 24455554 6666 6666677777655443
No 187
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.68 E-value=3.4e-08 Score=84.65 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=51.6
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCC-CCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCc
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKA-WKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTF 73 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~ 73 (204)
.++|+++.+..+...+...+...........+ .+.+++|+||||+|||++|++||+.++.+++.++++.+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 47899988888877776543322111111111 24679999999999999999999999999999998754
No 188
>PRK09183 transposase/IS protein; Provisional
Probab=98.64 E-value=4.3e-08 Score=79.76 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=45.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccCh-------HHHHHHHHh-cCCCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKEN-------MELRNMLIA-TKNKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~il~iDeid~~ 100 (204)
+.+++|+||||||||+++.+++..+ |..+.+++...+... ..+...+.. ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4569999999999999999998764 777777776544211 123344443 456779999999875
No 189
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=1.7e-06 Score=72.88 Aligned_cols=89 Identities=19% Similarity=0.310 Sum_probs=54.9
Q ss_pred cccccC-ChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 2 FDTLAM-DSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 2 ~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
|+++.| ++.+.+.+.+.+ ..+ ..+..+|||||+|+||+++|+++|+.+-.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~----~~~--------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSI----AKN--------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHH----HcC--------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 566777 554544443332 221 22556899999999999999999998732
Q ss_pred -------ceEEeecCCc-cChHHHHHHHHhc------CCCeEEEEecCCccch
Q 041769 64 -------DVYDLELTTF-KENMELRNMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 64 -------~~~~~~~~~~-~~~~~~~~~~~~~------~~~~il~iDeid~~~~ 102 (204)
++..+...+- .....++++.... ....|++||++|.++.
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~ 124 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA 124 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH
Confidence 2333332211 1224555554433 2457999999999944
No 190
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.62 E-value=5.2e-07 Score=69.75 Aligned_cols=66 Identities=23% Similarity=0.388 Sum_probs=45.0
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC------------------------ceEEeecCCc-cChHHHHHHHHhc-----
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF------------------------DVYDLELTTF-KENMELRNMLIAT----- 86 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~------------------------~~~~~~~~~~-~~~~~~~~~~~~~----- 86 (204)
+..+|||||+|+|||++++.+++.+.. ++..++...- .....++.++...
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 456999999999999999999999743 1333333221 2234555444443
Q ss_pred -CCCeEEEEecCCccch
Q 041769 87 -KNKSILVVGDIDYLTL 102 (204)
Q Consensus 87 -~~~~il~iDeid~~~~ 102 (204)
....+++|||+|.++.
T Consensus 94 ~~~~kviiide~~~l~~ 110 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE 110 (188)
T ss_pred cCCeEEEEEechhhhCH
Confidence 2567999999999944
No 191
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.62 E-value=1.2e-06 Score=76.08 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=60.4
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC---CceEEeecCCccChHHH
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTTFKENMEL 79 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~~~~~~~~~~~ 79 (204)
..++|.....+++.+.+..... ....||++|++||||..+|++|-+... .+++.+|+..+...---
T Consensus 141 ~~liG~S~am~~l~~~i~kvA~-----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~E 209 (464)
T COG2204 141 GELVGESPAMQQLRRLIAKVAP-----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLE 209 (464)
T ss_pred CCceecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHH
Confidence 3455665555555444443321 134499999999999999999999884 59999999887543222
Q ss_pred HHHHHh-----------------cCCCeEEEEecCCccchh
Q 041769 80 RNMLIA-----------------TKNKSILVVGDIDYLTLH 103 (204)
Q Consensus 80 ~~~~~~-----------------~~~~~il~iDeid~~~~~ 103 (204)
.++|.- ...++.||+|||..+.+.
T Consensus 210 SELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~ 250 (464)
T COG2204 210 SELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLE 250 (464)
T ss_pred HHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHH
Confidence 223331 135789999999999443
No 192
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.60 E-value=1.2e-06 Score=76.65 Aligned_cols=90 Identities=22% Similarity=0.307 Sum_probs=63.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENM 77 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~ 77 (204)
+|++++|......++.+.+.... +....+|++|.+||||..+|++|-+.. +.+|+.+|++.+-..
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~- 310 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET- 310 (560)
T ss_pred chhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH-
Confidence 47788888766666655554332 223459999999999999999999887 569999999876321
Q ss_pred HHHHHHHh-------------------cCCCeEEEEecCCccch
Q 041769 78 ELRNMLIA-------------------TKNKSILVVGDIDYLTL 102 (204)
Q Consensus 78 ~~~~~~~~-------------------~~~~~il~iDeid~~~~ 102 (204)
-+...+.. .+.++-||+|||..+.+
T Consensus 311 LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl 354 (560)
T COG3829 311 LLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPL 354 (560)
T ss_pred HHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCH
Confidence 11212222 13568999999999944
No 193
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.59 E-value=3.1e-08 Score=69.85 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=39.3
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
|.||||||+|||++++.|+..+...+..-....+-....-.+.+.....+.++++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 5799999999999999999887433211111111001111244566677889999999875
No 194
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.6e-07 Score=80.98 Aligned_cols=47 Identities=30% Similarity=0.469 Sum_probs=34.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+|.||.|+...|..+.-.. ..+.+++|+||||||||.+|+-+...++
T Consensus 177 D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred chhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccCC
Confidence 3667777766665551111 2246699999999999999999998884
No 195
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.56 E-value=3.7e-07 Score=76.86 Aligned_cols=47 Identities=23% Similarity=0.365 Sum_probs=36.3
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
|..++|+++.+..+.-.+.. +...|+++.|+||+|||++++++++.+
T Consensus 3 f~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 78889998887776333221 123569999999999999999999887
No 196
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=6.3e-08 Score=87.42 Aligned_cols=59 Identities=27% Similarity=0.340 Sum_probs=40.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
++++|.+++.....+...+.... .+...+..++|+||||+|||++++++|+.++..+..
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 36778888766666544443221 112223448999999999999999999999866533
No 197
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.53 E-value=1.1e-07 Score=68.72 Aligned_cols=37 Identities=30% Similarity=0.543 Sum_probs=28.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc--------CCceEEeecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL--------NFDVYDLELTTFK 74 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~--------~~~~~~~~~~~~~ 74 (204)
..++++||||+|||++++.+++.+ ..+++.+++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 458999999999999999999998 6777777765443
No 198
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.9e-07 Score=83.70 Aligned_cols=92 Identities=17% Similarity=0.318 Sum_probs=63.0
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCC-CCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCcc----
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKA-WKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFK---- 74 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~---- 74 (204)
+.|+||++....|.+.+..... .++-+ +...++|.||.|+|||-+|+++|..+ ...++.+|++.++
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 3567777766666555553321 12222 23459999999999999999999998 5688999998632
Q ss_pred ---------ChHHHHHHHHhc--CCCeEEEEecCCcc
Q 041769 75 ---------ENMELRNMLIAT--KNKSILVVGDIDYL 100 (204)
Q Consensus 75 ---------~~~~~~~~~~~~--~~~~il~iDeid~~ 100 (204)
+......+.... .+.+||+|||||..
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 222233333333 46799999999998
No 199
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.51 E-value=4.3e-07 Score=76.45 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=48.7
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC--CceEEeecCCccCh----
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN--FDVYDLELTTFKEN---- 76 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~--~~~~~~~~~~~~~~---- 76 (204)
+-++|+.+.++.+ ..+...+..++ -.++++||.||||||||.+|-++|+++| .|++.++.+.+-+.
T Consensus 24 ~GlVGQ~~AReAa-giiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kK 95 (398)
T PF06068_consen 24 DGLVGQEKAREAA-GIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKK 95 (398)
T ss_dssp TTEES-HHHHHHH-HHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-H
T ss_pred ccccChHHHHHHH-HHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCc
Confidence 4467887777765 33333333322 2368899999999999999999999997 68888888886322
Q ss_pred -HHHHHHHHhc
Q 041769 77 -MELRNMLIAT 86 (204)
Q Consensus 77 -~~~~~~~~~~ 86 (204)
..+.+.|..+
T Consensus 96 TE~L~qa~Rra 106 (398)
T PF06068_consen 96 TEALTQAFRRA 106 (398)
T ss_dssp HHHHHHHHHCS
T ss_pred hHHHHHHHHHh
Confidence 2345555554
No 200
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=2.6e-07 Score=67.13 Aligned_cols=62 Identities=21% Similarity=0.447 Sum_probs=46.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC--CceEEeecCCccChH----HHHHHHHhc--CCCeEEEEecCCcc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN--FDVYDLELTTFKENM----ELRNMLIAT--KNKSILVVGDIDYL 100 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~il~iDeid~~ 100 (204)
.++++||.|+||||+++.+++.+. .+++++++.+..... .+.+.+... ....+|+|||++.+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 488999999999999999999886 888888887754321 122333332 35789999999987
No 201
>PRK07261 topology modulation protein; Provisional
Probab=98.51 E-value=7.6e-07 Score=68.01 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=61.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------ChHHHHHHHHhc-CCCeEEEEecCCccch-hhhhhcccc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ENMELRNMLIAT-KNKSILVVGDIDYLTL-HILLRSSCM 111 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~il~iDeid~~~~-~a~~r~~R~ 111 (204)
++++|+||+||||+++.|++.++.+++.++.-... ...++...+... .... .+||....... ...+ .++
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wIidg~~~~~~~~~~l--~~a 79 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD-WIIDGNYSWCLYEERM--QEA 79 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCC-EEEcCcchhhhHHHHH--HHC
Confidence 78999999999999999999998887776533221 122333333333 3333 77888754322 2222 378
Q ss_pred ceeEecCCCCHHHHHHHHHHhh
Q 041769 112 DMHIHMSYCTPFRFKMLASNYF 133 (204)
Q Consensus 112 ~~~i~~~~p~~~~~~~i~~~~~ 133 (204)
|..+.+..|.......++.+..
T Consensus 80 d~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 80 DQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred CEEEEEcCCHHHHHHHHHHHHH
Confidence 9999999998877777766654
No 202
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.47 E-value=4.7e-07 Score=78.42 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=23.6
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+.+++|+||||||||++|+.+|..+.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 45699999999999999999999884
No 203
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.47 E-value=6.1e-07 Score=78.34 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=23.9
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+.+++|+||||||||++|++++...+.
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 456999999999999999999998753
No 204
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.47 E-value=2.1e-06 Score=73.37 Aligned_cols=88 Identities=18% Similarity=0.281 Sum_probs=60.9
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----CCceEEeecCCccChH
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----NFDVYDLELTTFKENM 77 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----~~~~~~~~~~~~~~~~ 77 (204)
+++++|.+..-+.+.+.+.. +. +....+|++|++||||+.+|+.|.... ..+++.+|++.+..+.
T Consensus 77 ~~~LIG~~~~~~~~~eqik~-------~a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~ 145 (403)
T COG1221 77 LDDLIGESPSLQELREQIKA-------YA----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL 145 (403)
T ss_pred hhhhhccCHHHHHHHHHHHh-------hC----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCH
Confidence 34556665554554444443 11 223459999999999999999998554 4589999999987665
Q ss_pred HHHHHHHhc-----------------CCCeEEEEecCCcc
Q 041769 78 ELRNMLIAT-----------------KNKSILVVGDIDYL 100 (204)
Q Consensus 78 ~~~~~~~~~-----------------~~~~il~iDeid~~ 100 (204)
...++|.-. ..++.||+|||..+
T Consensus 146 ~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~L 185 (403)
T COG1221 146 QEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRL 185 (403)
T ss_pred HHHHHhccccceeecccCCcCchheecCCCEEehhhhhhC
Confidence 554444321 25789999999999
No 205
>PRK04132 replication factor C small subunit; Provisional
Probab=98.47 E-value=1.4e-06 Score=80.97 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=51.7
Q ss_pred eEEEC--CCCCcHHHHHHHHHHhc-----CCceEEeecCCccChHHHHHHHHhcC--------CCeEEEEecCCccchh
Q 041769 40 YFLYG--PPGTGKSSLIAAMTNYL-----NFDVYDLELTTFKENMELRNMLIATK--------NKSILVVGDIDYLTLH 103 (204)
Q Consensus 40 ~ll~G--p~GtGKT~la~~la~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~il~iDeid~~~~~ 103 (204)
-+..| |++.||||+|+++|+.+ +.+++.+|+++..+...+++++.... +..|++|||+|.++.+
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~ 645 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQD 645 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHH
Confidence 45668 99999999999999998 56899999999777777777765431 2369999999999543
No 206
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.46 E-value=1.6e-07 Score=67.15 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=54.0
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeec--CCc------cCh--------HHHHHHHHhc---CCCeEEEEecCCcc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL--TTF------KEN--------MELRNMLIAT---KNKSILVVGDIDYL 100 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~--~~~------~~~--------~~~~~~~~~~---~~~~il~iDeid~~ 100 (204)
+++.|||||||||+++.||+.+|..++.++. ... ... ..+...+... .....+++|.....
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g~~~~ 81 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQNKPDNDNWIIDGSYES 81 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHETTT--EEEEECCSCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhccCCCCeEEEeCCCcc
Confidence 7899999999999999999999988877665 110 010 1122333333 24567888884431
Q ss_pred chhhhhhccccceeEecCCCCHHHHHHHHHH
Q 041769 101 TLHILLRSSCMDMHIHMSYCTPFRFKMLASN 131 (204)
Q Consensus 101 ~~~a~~r~~R~~~~i~~~~p~~~~~~~i~~~ 131 (204)
...+ +...++..+.+..|....+..+..+
T Consensus 82 -~~~~-~~~~~~~~i~l~~~~~~~~~~~~~R 110 (121)
T PF13207_consen 82 -EMEI-RLPEFDHVIYLDAPDEECRERRLKR 110 (121)
T ss_dssp -CCHS-CCHHGGCEEEEEEEEHHHHHHHHHH
T ss_pred -chhh-hhhcCCEEEEEECCCHHHHHHHHHH
Confidence 1122 2224556677777776555444444
No 207
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.44 E-value=1.5e-06 Score=79.17 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=34.9
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
|..|+|++..+..+.-.+. . +...|++|+|++|||||++|++|+..+
T Consensus 3 f~~ivGq~~~~~al~~~av----~---------~~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAV----D---------PRIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred cchhcChHHHHHHHHHHhh----C---------CCCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 7889998877655422111 1 112469999999999999999999988
No 208
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.42 E-value=1.6e-05 Score=64.65 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
++++||+|+|||++++.+++.+.
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999999885
No 209
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.42 E-value=1.5e-05 Score=70.00 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=47.9
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC---CceEEeecCCccChHHHHH-HHHh-----------------cCCCeEEEEe
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTTFKENMELRN-MLIA-----------------TKNKSILVVG 95 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~~~~~~~~~~~~~-~~~~-----------------~~~~~il~iD 95 (204)
...+++.|++|||||++|+++..... .+++.++++.+... .+.. +|.. ...++.+|||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~-~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~ 239 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD-LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH-HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEe
Confidence 34599999999999999999999863 58999999887432 2222 2221 1246789999
Q ss_pred cCCccch
Q 041769 96 DIDYLTL 102 (204)
Q Consensus 96 eid~~~~ 102 (204)
|++.++.
T Consensus 240 ~i~~l~~ 246 (469)
T PRK10923 240 EIGDMPL 246 (469)
T ss_pred ccccCCH
Confidence 9998844
No 210
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=1e-05 Score=68.02 Aligned_cols=66 Identities=21% Similarity=0.381 Sum_probs=46.7
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC------------------------ceEEeecCC---ccChHHHHHHHHhc---
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF------------------------DVYDLELTT---FKENMELRNMLIAT--- 86 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~------------------------~~~~~~~~~---~~~~~~~~~~~~~~--- 86 (204)
+.++||+||+|+|||++|+.+|+.+.+ +++.+.... ......++++....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 456999999999999999999999843 344443321 12335666665544
Q ss_pred ---CCCeEEEEecCCccch
Q 041769 87 ---KNKSILVVGDIDYLTL 102 (204)
Q Consensus 87 ---~~~~il~iDeid~~~~ 102 (204)
....|++||++|.++.
T Consensus 102 ~~~~~~kv~iI~~a~~m~~ 120 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNR 120 (328)
T ss_pred cccCCCeEEEECChhhCCH
Confidence 2467899999999944
No 211
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.40 E-value=3.5e-06 Score=63.78 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=50.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC-----------------------CceEEeecCCc---cChHHHHHHHHhcC---
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN-----------------------FDVYDLELTTF---KENMELRNMLIATK--- 87 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~-----------------------~~~~~~~~~~~---~~~~~~~~~~~~~~--- 87 (204)
+..+||+||+|+||+++|.++|+.+- .+++.++.... .....++++.....
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~ 98 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSP 98 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHH
Confidence 56699999999999999999999882 24555555443 24466666666552
Q ss_pred ---CCeEEEEecCCccchh---hhhh
Q 041769 88 ---NKSILVVGDIDYLTLH---ILLR 107 (204)
Q Consensus 88 ---~~~il~iDeid~~~~~---a~~r 107 (204)
...+++||++|.++.. ++++
T Consensus 99 ~~~~~KviiI~~ad~l~~~a~NaLLK 124 (162)
T PF13177_consen 99 SEGKYKVIIIDEADKLTEEAQNALLK 124 (162)
T ss_dssp TTSSSEEEEEETGGGS-HHHHHHHHH
T ss_pred hcCCceEEEeehHhhhhHHHHHHHHH
Confidence 5679999999999543 6665
No 212
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.40 E-value=3.8e-07 Score=67.13 Aligned_cols=79 Identities=25% Similarity=0.343 Sum_probs=50.3
Q ss_pred CChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC---ceEEeecCCccChHHHHHHH
Q 041769 7 MDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF---DVYDLELTTFKENMELRNML 83 (204)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~---~~~~~~~~~~~~~~~~~~~~ 83 (204)
|.....+++.+.+..... ....++++|++||||+++|++|....+. +++.+++.... .+.+
T Consensus 2 G~S~~~~~l~~~l~~~a~-----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAK-----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHC-----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhC-----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 444455555555554432 1344999999999999999999998754 33444444322 3344
Q ss_pred HhcCCCeEEEEecCCccch
Q 041769 84 IATKNKSILVVGDIDYLTL 102 (204)
Q Consensus 84 ~~~~~~~il~iDeid~~~~ 102 (204)
..+ .++.|+|+|+|.++.
T Consensus 66 ~~a-~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 66 EQA-KGGTLYLKNIDRLSP 83 (138)
T ss_dssp HHC-TTSEEEEECGCCS-H
T ss_pred HHc-CCCEEEECChHHCCH
Confidence 444 778899999999943
No 213
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=2.1e-05 Score=65.77 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=38.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.|++++|++.+++.+...+.. . ..+.++||+||+|+||+++|.++|+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~----~--------rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ----N--------RIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh----C--------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 488999998887776555431 1 124569999999999999999999987
No 214
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.36 E-value=1.3e-05 Score=70.11 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=47.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHHHHHh-----------------cCCCeEEEEecC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRNMLIA-----------------TKNKSILVVGDI 97 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~il~iDei 97 (204)
..++++|++||||+++|+++.... +.+++.+++..+....--...|.. ...++.|||||+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i 246 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEI 246 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEech
Confidence 459999999999999999998765 468999998876432211222221 124689999999
Q ss_pred Cccch
Q 041769 98 DYLTL 102 (204)
Q Consensus 98 d~~~~ 102 (204)
+.+..
T Consensus 247 ~~l~~ 251 (457)
T PRK11361 247 GEMPL 251 (457)
T ss_pred hhCCH
Confidence 99933
No 215
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.36 E-value=5.4e-07 Score=79.97 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=44.2
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC-CceEEe
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN-FDVYDL 68 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-~~~~~~ 68 (204)
|++++|.+++++++.+.+...... ++. ...-++|+||||+|||+|+++|++.+. .+++.+
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~g------l~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~ 135 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQG------LEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVL 135 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHh------cCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceee
Confidence 788999999999987776543321 111 234588999999999999999999883 345544
No 216
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.34 E-value=3e-06 Score=69.48 Aligned_cols=64 Identities=27% Similarity=0.483 Sum_probs=42.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCc---eEEeecCCccChHHHHHHHHhc-------------CCCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFD---VYDLELTTFKENMELRNMLIAT-------------KNKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------------~~~~il~iDeid~~ 100 (204)
++.++|+||+|||||++++..-+.+... +..++++...+...+.++++.. .+..++||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 5669999999999999998887766433 3445665544444444333322 14579999999987
No 217
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.34 E-value=6.3e-07 Score=64.56 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=40.3
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
++|.|+.-+.+.+.+.+..++..+. -..|--+.|+|+||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3678888888888888887765431 1123336699999999999999999985
No 218
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.7e-05 Score=69.52 Aligned_cols=63 Identities=30% Similarity=0.467 Sum_probs=49.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEee-cCC---ccC---hHHHHHHHHhcC--CCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE-LTT---FKE---NMELRNMLIATK--NKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~-~~~---~~~---~~~~~~~~~~~~--~~~il~iDeid~~ 100 (204)
..+||+||||+|||+||..+|...+.|++.+- +.+ +.. ...+.++|..+. .-+||++|+++.+
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErL 610 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERL 610 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhh
Confidence 45999999999999999999999999998753 222 222 245677777763 5689999999998
No 219
>PHA02624 large T antigen; Provisional
Probab=98.32 E-value=3.2e-06 Score=75.40 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=42.6
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKNKSILVVGDID 98 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid 98 (204)
|+|..+.++|+||||||||+|+.+|++.++-.+..++.+.-...-.+ +-+....+.+|||+-
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL----~pl~D~~~~l~dD~t 488 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFEL----GCAIDQFMVVFEDVK 488 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHh----hhhhhceEEEeeecc
Confidence 56777889999999999999999999999666666764332111111 112234567777774
No 220
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.31 E-value=6.9e-07 Score=71.60 Aligned_cols=114 Identities=15% Similarity=0.217 Sum_probs=70.8
Q ss_pred HHhHHHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 23 VKRKEFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 23 ~~~~~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
+.++..+++.++....| +.|.||+||||||+++.|.+....+ .+-|+||+-+..
T Consensus 11 y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept------------------------~G~I~i~g~~i~ 66 (309)
T COG1125 11 YGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT------------------------SGEILIDGEDIS 66 (309)
T ss_pred cCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC------------------------CceEEECCeecc
Confidence 34555666666666555 7799999999999999999855332 234556655554
Q ss_pred chh--hhhhc-c-ccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhhCCCCHHHHHH
Q 041769 101 TLH--ILLRS-S-CMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEKANVTLADVVE 160 (204)
Q Consensus 101 ~~~--a~~r~-~-R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 160 (204)
+.+ .+.|. | -+..+-.||--+-.+--.+.-...+.....+..++.+++...++.|.+...
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~ 130 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYAD 130 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhh
Confidence 433 23331 1 122223444445455444555566666777778888898888888765443
No 221
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.31 E-value=1e-06 Score=72.52 Aligned_cols=70 Identities=26% Similarity=0.416 Sum_probs=47.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCc------eEEeecCCccChHHHH---HHHHhc---------CCCeEEEEecCCc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFD------VYDLELTTFKENMELR---NMLIAT---------KNKSILVVGDIDY 99 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~---------~~~~il~iDeid~ 99 (204)
.+.|||||||+|||+.+.+.|+.+..+ +..+++++-.+..-.+ ..|... ....++++||+|.
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADa 142 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADA 142 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhH
Confidence 379999999999999999999988442 3335555543332222 122222 2567999999999
Q ss_pred cchh---hhhh
Q 041769 100 LTLH---ILLR 107 (204)
Q Consensus 100 ~~~~---a~~r 107 (204)
+|.+ |+.|
T Consensus 143 MT~~AQnALRR 153 (360)
T KOG0990|consen 143 MTRDAQNALRR 153 (360)
T ss_pred hhHHHHHHHHH
Confidence 9776 6666
No 222
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.31 E-value=8.1e-07 Score=78.79 Aligned_cols=58 Identities=28% Similarity=0.462 Sum_probs=40.3
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
++|....+..+++..++..... +....+-++|+|||||||||++++||+++|..+...
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 4555555555555555543321 222234588999999999999999999999888775
No 223
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.29 E-value=1.5e-05 Score=69.33 Aligned_cols=91 Identities=19% Similarity=0.299 Sum_probs=63.5
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccCh--
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKEN-- 76 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~-- 76 (204)
+..++|.+....++++.+...... ...||+.|.+||||..+|++|-+.. ..+++.+|++.+-..
T Consensus 222 ~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLl 290 (550)
T COG3604 222 VGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLL 290 (550)
T ss_pred cccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHH
Confidence 346777777777776666544321 2349999999999999999999987 469999999887432
Q ss_pred -HHH----HHHHHhc----------CCCeEEEEecCCccchh
Q 041769 77 -MEL----RNMLIAT----------KNKSILVVGDIDYLTLH 103 (204)
Q Consensus 77 -~~~----~~~~~~~----------~~~~il~iDeid~~~~~ 103 (204)
+++ +..|..+ ..++-||+|||..+.++
T Consensus 291 ESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~ 332 (550)
T COG3604 291 ESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLA 332 (550)
T ss_pred HHHHhcccccccccchhccCcceeecCCCeEechhhccCCHH
Confidence 111 1111111 36789999999999554
No 224
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.29 E-value=1.3e-06 Score=72.94 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=33.6
Q ss_pred CCCceeEEECCCCCcHHHHHHHHHHhcC--CceEEeecCCc
Q 041769 35 AWKHSYFLYGPPGTGKSSLIAAMTNYLN--FDVYDLELTTF 73 (204)
Q Consensus 35 ~~~~g~ll~Gp~GtGKT~la~~la~~~~--~~~~~~~~~~~ 73 (204)
-.++|+|+.||||||||.+|-++|+++| .||+.++.+.+
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 3478899999999999999999999997 47777777765
No 225
>PRK06217 hypothetical protein; Validated
Probab=98.28 E-value=3.5e-06 Score=64.94 Aligned_cols=91 Identities=18% Similarity=0.186 Sum_probs=56.1
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc----------Ch-HHHHHHHHhcCCCeEEEEecCCccchhhhhhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK----------EN-MELRNMLIATKNKSILVVGDIDYLTLHILLRS 108 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~il~iDeid~~~~~a~~r~ 108 (204)
|+|.|+||+||||+++.|++.++.+++.+|.-... .. .....+........-++||..-......+ .
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~G~~~~~~~~~-~- 81 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDLRPREGWVLSGSALGWGDPL-E- 81 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCCHHHHHHHHHHHHhcCCCEEEEccHHHHHHHH-H-
Confidence 89999999999999999999999887765521110 11 11222233322223456775433221222 2
Q ss_pred cccceeEecCCCCHHHHHHHHHHh
Q 041769 109 SCMDMHIHMSYCTPFRFKMLASNY 132 (204)
Q Consensus 109 ~R~~~~i~~~~p~~~~~~~i~~~~ 132 (204)
.++|..+.+..|.......+..+.
T Consensus 82 ~~~d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 82 PLFDLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred hhCCEEEEEECCHHHHHHHHHcCc
Confidence 378888888888877766666543
No 226
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.28 E-value=2.2e-06 Score=76.16 Aligned_cols=61 Identities=21% Similarity=0.377 Sum_probs=39.5
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe----ecCCccChHHHHH------HH----HhcCCCeEEEEecCCcc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL----ELTTFKENMELRN------ML----IATKNKSILVVGDIDYL 100 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~----~~~~~~~~~~~~~------~~----~~~~~~~il~iDeid~~ 100 (204)
++||+|+||||||++|+++++..+...+.. +...+.. ..+.. .+ .....+++++|||++.+
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l 312 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-AVTRDPETREFTLEGGALVLADNGVCCIDEFDKM 312 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-cceEccCcceEEecCccEEecCCCEEEEechhhC
Confidence 699999999999999999999886554332 1111211 00000 00 01235789999999998
No 227
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.26 E-value=1.1e-06 Score=66.50 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=29.9
Q ss_pred CCceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 36 WKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 36 ~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
.+..++|+|+||||||++++.||+.++.+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3556999999999999999999999998887654
No 228
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.26 E-value=5.6e-05 Score=66.27 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=46.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHHHH-Hh-----------------cCCCeEEEEec
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRNML-IA-----------------TKNKSILVVGD 96 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~il~iDe 96 (204)
..+++.|.+||||+++++++.... +.+++.+++..+.. ..+...+ .. ...++.|+|||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-DLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-HHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 459999999999999999998875 45899999887633 2222222 21 12468899999
Q ss_pred CCccch
Q 041769 97 IDYLTL 102 (204)
Q Consensus 97 id~~~~ 102 (204)
++.++.
T Consensus 237 i~~l~~ 242 (463)
T TIGR01818 237 IGDMPL 242 (463)
T ss_pred hhhCCH
Confidence 999944
No 229
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.26 E-value=1.9e-05 Score=65.10 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=28.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC---------CceEEeecCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN---------FDVYDLELTT 72 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~---------~~~~~~~~~~ 72 (204)
.+++++|++|.|||++++.+++..+ .+++.+++..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 4699999999999999999998773 3677777643
No 230
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=5.4e-05 Score=63.39 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=44.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC---------------------ceEEee--cCCc-------cChHHHHHHHHhc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF---------------------DVYDLE--LTTF-------KENMELRNMLIAT 86 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~---------------------~~~~~~--~~~~-------~~~~~~~~~~~~~ 86 (204)
+.++||+||+|+||+++|.++|+.+-+ +++.+. +..- .....++++....
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 556999999999999999999987721 233342 1110 1123445444433
Q ss_pred ------CCCeEEEEecCCccchh
Q 041769 87 ------KNKSILVVGDIDYLTLH 103 (204)
Q Consensus 87 ------~~~~il~iDeid~~~~~ 103 (204)
....|++||++|.++.+
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~~ 128 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINRA 128 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCHH
Confidence 14579999999999543
No 231
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.4e-05 Score=70.83 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=92.6
Q ss_pred hHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC------hHHHHHHHHhcC--CCeEEEEec
Q 041769 25 RKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE------NMELRNMLIATK--NKSILVVGD 96 (204)
Q Consensus 25 ~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~il~iDe 96 (204)
.+..+...+...+.+++++||||+|||.++++++.. +.....++...+.. ...++..+..+. .++++++|+
T Consensus 6 ~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~ 84 (494)
T COG0464 6 EPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDE 84 (494)
T ss_pred CHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeech
Confidence 456677788888999999999999999999999998 54444444444321 234455555553 458999999
Q ss_pred CCcc--------------------------c--------h--------hhhhhccccceeEecCCCCHHHHHHHHHHhhC
Q 041769 97 IDYL--------------------------T--------L--------HILLRSSCMDMHIHMSYCTPFRFKMLASNYFG 134 (204)
Q Consensus 97 id~~--------------------------~--------~--------~a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~ 134 (204)
++.+ . . .++.+++||+..+.+..|+...+..+......
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~ 164 (494)
T COG0464 85 IDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTR 164 (494)
T ss_pred hhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHh
Confidence 9998 1 0 06777899999999999999887665554433
Q ss_pred CCCCCcHHHHHH-HhhhCCCCHHHHHHHH
Q 041769 135 ITEHPLLTEIDE-LIEKANVTLADVVEQL 162 (204)
Q Consensus 135 ~~~~~~~~~~~~-~~~~~~l~~~~i~~~~ 162 (204)
............ .....++..+++..++
T Consensus 165 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 193 (494)
T COG0464 165 LMFLGPPGTGKTLAARTVGKSGADLGALA 193 (494)
T ss_pred cCCCcccccHHHHHHhcCCccHHHHHHHH
Confidence 221111112222 2233677777777666
No 232
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.24 E-value=1.2e-06 Score=67.27 Aligned_cols=37 Identities=32% Similarity=0.471 Sum_probs=30.4
Q ss_pred hHHHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhc
Q 041769 25 RKEFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 25 ~~~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.++++.++.+..+.| +++.||+|+|||||++.|....
T Consensus 14 g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 14 GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 345677777777776 7899999999999999999954
No 233
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=8.1e-05 Score=62.81 Aligned_cols=66 Identities=23% Similarity=0.300 Sum_probs=46.4
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC------------------------CceEEeecCC---ccChHHHHHHHHhc---
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN------------------------FDVYDLELTT---FKENMELRNMLIAT--- 86 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~------------------------~~~~~~~~~~---~~~~~~~~~~~~~~--- 86 (204)
+.++||+||+|+||+++|.++|+.+- ++++.+.... ......++++....
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 103 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEH 103 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhc
Confidence 55699999999999999999999882 2344443321 12334555555443
Q ss_pred ---CCCeEEEEecCCccch
Q 041769 87 ---KNKSILVVGDIDYLTL 102 (204)
Q Consensus 87 ---~~~~il~iDeid~~~~ 102 (204)
....|++||++|.++.
T Consensus 104 ~~~g~~kV~iI~~ae~m~~ 122 (334)
T PRK07993 104 ARLGGAKVVWLPDAALLTD 122 (334)
T ss_pred cccCCceEEEEcchHhhCH
Confidence 2567999999999954
No 234
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.22 E-value=4.7e-05 Score=66.42 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=47.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHHH-HHh-----------------cCCCeEEEEec
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRNM-LIA-----------------TKNKSILVVGD 96 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~-~~~-----------------~~~~~il~iDe 96 (204)
..++++|++||||+++|+++.... +.+++.+++..+.. ..+... |.. ...++.|+|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEec
Confidence 459999999999999999998776 35789999887643 223222 220 13568999999
Q ss_pred CCccchh
Q 041769 97 IDYLTLH 103 (204)
Q Consensus 97 id~~~~~ 103 (204)
++.++..
T Consensus 242 i~~l~~~ 248 (445)
T TIGR02915 242 IGDLPLN 248 (445)
T ss_pred hhhCCHH
Confidence 9999443
No 235
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.21 E-value=3.5e-05 Score=69.41 Aligned_cols=62 Identities=19% Similarity=0.462 Sum_probs=43.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc----------CCceEEeecCCccChHHH----------------------HHHHH--
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLELTTFKENMEL----------------------RNMLI-- 84 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~~~~~~~~~~----------------------~~~~~-- 84 (204)
.+++.|-||||||.+++.+...+ ...++.+|.-.+....++ ...|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 58999999999999999999966 346666665544332222 12222
Q ss_pred -hcCCCeEEEEecCCcc
Q 041769 85 -ATKNKSILVVGDIDYL 100 (204)
Q Consensus 85 -~~~~~~il~iDeid~~ 100 (204)
.-...+||+|||.|.+
T Consensus 504 k~~~~~~VvLiDElD~L 520 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDIL 520 (767)
T ss_pred CCCCCCEEEEeccHHHH
Confidence 0125789999999998
No 236
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.17 E-value=3.8e-05 Score=62.39 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=21.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++||||+|+||-|.+-++-+++
T Consensus 35 PHll~yGPSGaGKKTrimclL~el 58 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLREL 58 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHH
Confidence 459999999999999999998887
No 237
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.17 E-value=1.2e-06 Score=64.34 Aligned_cols=28 Identities=39% Similarity=0.645 Sum_probs=24.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
++++||||+||||+++.+++.++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 6899999999999999999999844443
No 238
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.16 E-value=1.7e-05 Score=58.26 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=27.6
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+.+.|+||+||||+++.|+..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999887766
No 239
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.14 E-value=1.7e-05 Score=77.18 Aligned_cols=61 Identities=25% Similarity=0.450 Sum_probs=49.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHH--------------------HHhcCCCeEEEEec
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNM--------------------LIATKNKSILVVGD 96 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~il~iDe 96 (204)
.++++|-|.||+|||+++.++|+..|..++.+++++.. ++... +.+...+..+++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQT---dL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQT---DLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccc---hHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeeh
Confidence 56699999999999999999999999999999988732 22222 23334678999999
Q ss_pred CCcc
Q 041769 97 IDYL 100 (204)
Q Consensus 97 id~~ 100 (204)
+...
T Consensus 1620 iNLa 1623 (4600)
T COG5271 1620 INLA 1623 (4600)
T ss_pred hhhh
Confidence 9987
No 240
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=7.4e-06 Score=68.15 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=55.2
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCC-CCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCc
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGK-AWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTF 73 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~ 73 (204)
.++|+.+.|..+.=.++.-+.+.++-..+.- -.|..+|..||.|+|||.+||-||+..+.||+.+.+..+
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 4688988888887777776665554444332 235679999999999999999999999999999887654
No 241
>PRK03839 putative kinase; Provisional
Probab=98.13 E-value=2.4e-06 Score=65.49 Aligned_cols=30 Identities=27% Similarity=0.565 Sum_probs=27.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
++|.|+||+||||+++.||+.++.+++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999998887654
No 242
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.13 E-value=1.9e-05 Score=65.10 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=29.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc----C-CceEEeecCCc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL----N-FDVYDLELTTF 73 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~----~-~~~~~~~~~~~ 73 (204)
..++|+||+|+||||++..||..+ | ..+..++....
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 348899999999999999998876 3 67777776653
No 243
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=0.00011 Score=62.11 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.8
Q ss_pred CCCceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 35 AWKHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 35 ~~~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
..+.++||+||+|+||+++|+.+|+.+.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4466799999999999999999999883
No 244
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=3.3e-05 Score=64.95 Aligned_cols=67 Identities=13% Similarity=0.260 Sum_probs=46.8
Q ss_pred CCceeEEECCCCCcHHHHHHHHHHhcC-------------------------CceEEeecCC----------ccChHHHH
Q 041769 36 WKHSYFLYGPPGTGKSSLIAAMTNYLN-------------------------FDVYDLELTT----------FKENMELR 80 (204)
Q Consensus 36 ~~~g~ll~Gp~GtGKT~la~~la~~~~-------------------------~~~~~~~~~~----------~~~~~~~~ 80 (204)
.+.+++|+||+|+|||++|+.+|+.+. ++++.+.+.+ -.....++
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 356699999999999999999999873 3455555421 01234555
Q ss_pred HHHHhc------CCCeEEEEecCCccch
Q 041769 81 NMLIAT------KNKSILVVGDIDYLTL 102 (204)
Q Consensus 81 ~~~~~~------~~~~il~iDeid~~~~ 102 (204)
++.... ....|++||+++.++.
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~ 127 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNL 127 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCH
Confidence 554444 2467999999999933
No 245
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.09 E-value=1e-05 Score=60.06 Aligned_cols=32 Identities=22% Similarity=0.515 Sum_probs=26.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
++++||||+|||+++..++... +.+++.++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6899999999999999999887 4566665543
No 246
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.09 E-value=3.6e-06 Score=62.55 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=27.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
++++|+||+|||++++.|+..++.+++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999887765
No 247
>PRK15115 response regulator GlrR; Provisional
Probab=98.09 E-value=0.00013 Score=63.62 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=47.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHHH-HHh-----------------cCCCeEEEEec
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRNM-LIA-----------------TKNKSILVVGD 96 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~-~~~-----------------~~~~~il~iDe 96 (204)
..++++|++|||||++|+++.... +.+++.+++..+.. ..+... |.. ...++.|||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 459999999999999999998876 46899999887633 222222 211 13568999999
Q ss_pred CCccch
Q 041769 97 IDYLTL 102 (204)
Q Consensus 97 id~~~~ 102 (204)
++.++.
T Consensus 237 i~~l~~ 242 (444)
T PRK15115 237 IGDMPA 242 (444)
T ss_pred cccCCH
Confidence 999844
No 248
>PRK13947 shikimate kinase; Provisional
Probab=98.08 E-value=3.9e-06 Score=63.65 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=29.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEeec
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL 70 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~ 70 (204)
.+++.|+||||||++++.||..+|.+++..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 48999999999999999999999999887663
No 249
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.08 E-value=5.3e-06 Score=63.79 Aligned_cols=25 Identities=36% Similarity=0.757 Sum_probs=22.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
+++.||||+||||+|+.|++.++.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999995543
No 250
>PRK13949 shikimate kinase; Provisional
Probab=98.07 E-value=3.9e-06 Score=63.97 Aligned_cols=31 Identities=35% Similarity=0.541 Sum_probs=28.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
.++|+|+||+||||+++.||+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 4899999999999999999999999888866
No 251
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.06 E-value=2.1e-06 Score=65.57 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=34.2
Q ss_pred ccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc---eEEeecCCc
Q 041769 5 LAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD---VYDLELTTF 73 (204)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~---~~~~~~~~~ 73 (204)
++|.++..+++...+. ..... .+..++++|++|+|||++++.+...+... ++.++....
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~~---------~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQSG---------SPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS--------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHHcC---------CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4566666666655443 11111 14569999999999999999988888443 666655544
No 252
>PRK00625 shikimate kinase; Provisional
Probab=98.06 E-value=4.2e-06 Score=64.08 Aligned_cols=30 Identities=33% Similarity=0.671 Sum_probs=28.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
++|+|.||+||||+++.+|+.++.+++.+|
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 899999999999999999999999988766
No 253
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.05 E-value=5.8e-06 Score=65.57 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=38.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCC----------------ccChHHHHHHHHhc----CCCeEEEEec
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTT----------------FKENMELRNMLIAT----KNKSILVVGD 96 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~----~~~~il~iDe 96 (204)
+.-++|||+||+||||+|+.++.. .-++..+.+. ...-..+.+.+... .....|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 344999999999999999998742 1122222211 01112333333332 3578999999
Q ss_pred CCcc
Q 041769 97 IDYL 100 (204)
Q Consensus 97 id~~ 100 (204)
++.+
T Consensus 90 I~~l 93 (220)
T TIGR01618 90 ISAL 93 (220)
T ss_pred HHHH
Confidence 9987
No 254
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=7.8e-05 Score=62.57 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=45.5
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC------------------------ceEEeecC--CccChHHHHHHHHhc----
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF------------------------DVYDLELT--TFKENMELRNMLIAT---- 86 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~------------------------~~~~~~~~--~~~~~~~~~~~~~~~---- 86 (204)
+.++||+||+|+||+++|+.+|+.+-+ +++.+... .-.+...++++....
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 556999999999999999999998832 23334321 112335556554443
Q ss_pred --CCCeEEEEecCCccch
Q 041769 87 --KNKSILVVGDIDYLTL 102 (204)
Q Consensus 87 --~~~~il~iDeid~~~~ 102 (204)
....|++||++|.++.
T Consensus 104 ~~g~~KV~iI~~a~~m~~ 121 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTE 121 (325)
T ss_pred ccCCceEEEEechhhhCH
Confidence 2567999999999943
No 255
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.05 E-value=4.6e-06 Score=63.94 Aligned_cols=29 Identities=28% Similarity=0.553 Sum_probs=25.3
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
++++|||||||||+++.||..+|...++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998655553
No 256
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.02 E-value=5.6e-06 Score=61.47 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=24.6
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
++|+|+||+||||+++.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998766544
No 257
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.02 E-value=7.7e-06 Score=66.17 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=53.0
Q ss_pred HHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCce--EEeecCCcc--ChHHHHHHHHhcCCCeEEEEecCCccc
Q 041769 28 FYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFDV--YDLELTTFK--ENMELRNMLIATKNKSILVVGDIDYLT 101 (204)
Q Consensus 28 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~il~iDeid~~~ 101 (204)
.++++.+..+.| +.+.||+|+|||||++++++.+.+.- +.++..++. ...++.+.+.-.++.. . ....++
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~-~---~~~~~t 92 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSP-S---APFGLT 92 (258)
T ss_pred EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCC-C---CCCCcE
Confidence 344445544444 78999999999999999999886433 444444432 2233333322222110 0 000111
Q ss_pred hhhhhhccccceeEecCCCCHHHHHHH
Q 041769 102 LHILLRSSCMDMHIHMSYCTPFRFKML 128 (204)
Q Consensus 102 ~~a~~r~~R~~~~i~~~~p~~~~~~~i 128 (204)
.-.+.--||+...=.+..++.+....+
T Consensus 93 V~d~V~~GR~p~~~~~~~~~~~D~~~v 119 (258)
T COG1120 93 VYELVLLGRYPHLGLFGRPSKEDEEIV 119 (258)
T ss_pred EeehHhhcCCcccccccCCCHhHHHHH
Confidence 112333468877667777777765433
No 258
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.01 E-value=1.6e-05 Score=71.22 Aligned_cols=95 Identities=19% Similarity=0.272 Sum_probs=57.6
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhC-CCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeec----CCcc----
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVG-KAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL----TTFK---- 74 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~----~~~~---- 74 (204)
++++.+++|+.+ .++.|-+..+.+...| +....++||+|.||||||.+++.+.+.++..++.-=- .++.
T Consensus 430 sIye~edvKkgl--LLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGL--LLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhH--HHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 356666777765 3444544444444433 3334569999999999999999999988766554211 1110
Q ss_pred ChHHHHHHHHh-----cCCCeEEEEecCCcc
Q 041769 75 ENMELRNMLIA-----TKNKSILVVGDIDYL 100 (204)
Q Consensus 75 ~~~~~~~~~~~-----~~~~~il~iDeid~~ 100 (204)
...+-++.+.+ +..+++=+|||+|++
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM 538 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKM 538 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhh
Confidence 00111111111 136788899999999
No 259
>PRK14532 adenylate kinase; Provisional
Probab=98.00 E-value=6.1e-06 Score=63.66 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=26.3
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
+++.||||+||||+++.||+.+|...++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 88999999999999999999999777654
No 260
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.00 E-value=9.3e-06 Score=68.14 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=24.2
Q ss_pred HhCCCCCce--eEEECCCCCcHHHHHHHHHHhc
Q 041769 31 NVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 31 ~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+.+....| +.|.||+||||||++|.||+..
T Consensus 21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444444 8899999999999999999943
No 261
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=2.4e-05 Score=66.74 Aligned_cols=64 Identities=22% Similarity=0.368 Sum_probs=45.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc----C-CceEEeecCCcc----------------------ChHHHHHHHHhcCCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL----N-FDVYDLELTTFK----------------------ENMELRNMLIATKNK 89 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~----~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~ 89 (204)
+..++|+||+|+||||++..||..+ | ..+..++...+. ...++...+......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3458999999999999999999864 3 355555554432 122344445555677
Q ss_pred eEEEEecCCcc
Q 041769 90 SILVVGDIDYL 100 (204)
Q Consensus 90 ~il~iDeid~~ 100 (204)
.+|+||.....
T Consensus 217 DlVLIDTaG~~ 227 (374)
T PRK14722 217 HMVLIDTIGMS 227 (374)
T ss_pred CEEEEcCCCCC
Confidence 89999999887
No 262
>PHA02774 E1; Provisional
Probab=98.00 E-value=1.5e-05 Score=70.85 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=41.1
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhcCCce-EEeecCCccChHHHHHHHHhcCCCeEEEEecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDV-YDLELTTFKENMELRNMLIATKNKSILVVGDI 97 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 97 (204)
+.|..++++||||||||||+++-+|++.++..+ ..+|-.+.-- ++.+....++++||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~Fw-------Lqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHFW-------LQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccccc-------cchhccCCEEEEecC
Confidence 556667899999999999999999999986444 3355422100 233334568999998
No 263
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.00 E-value=5.9e-06 Score=62.24 Aligned_cols=28 Identities=29% Similarity=0.580 Sum_probs=24.3
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
+++.||||+||||+++.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4689999999999999999999866544
No 264
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=4.4e-05 Score=65.53 Aligned_cols=64 Identities=20% Similarity=0.447 Sum_probs=45.0
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc-------CCceEEeecCCccC----------------------hHHHHHHHHhcC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL-------NFDVYDLELTTFKE----------------------NMELRNMLIATK 87 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~-------~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 87 (204)
+..++|+||+|+||||++..+|..+ +..+..+++...+. ...+...+....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 3458999999999999999998765 35566665544321 133444444455
Q ss_pred CCeEEEEecCCcc
Q 041769 88 NKSILVVGDIDYL 100 (204)
Q Consensus 88 ~~~il~iDeid~~ 100 (204)
...+|+||.+...
T Consensus 254 ~~DlVLIDTaGr~ 266 (388)
T PRK12723 254 DFDLVLVDTIGKS 266 (388)
T ss_pred CCCEEEEcCCCCC
Confidence 6789999999887
No 265
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.99 E-value=0.00023 Score=61.94 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=47.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHHHHHh------------------cCCCeEEEEec
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRNMLIA------------------TKNKSILVVGD 96 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~il~iDe 96 (204)
..++++|.+||||+++++++.... +.+++.++++.+.. ..+...+.. ...++.|||||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEec
Confidence 459999999999999999998765 46899999987643 333332211 12468899999
Q ss_pred CCccch
Q 041769 97 IDYLTL 102 (204)
Q Consensus 97 id~~~~ 102 (204)
++.+..
T Consensus 242 i~~l~~ 247 (441)
T PRK10365 242 IGDISP 247 (441)
T ss_pred cccCCH
Confidence 999943
No 266
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.98 E-value=0.00017 Score=70.17 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.0
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.+-+.++|++|+||||+|+++++.+..
T Consensus 207 ~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 207 VRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 345889999999999999999887743
No 267
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.97 E-value=2.9e-05 Score=70.21 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=42.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCC--ceEEeecCC----ccChHHHHHHHHh-----------cCCCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNF--DVYDLELTT----FKENMELRNMLIA-----------TKNKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~--~~~~~~~~~----~~~~~~~~~~~~~-----------~~~~~il~iDeid~~ 100 (204)
.|++|.|+||||||+++++++..++. +++.++... +-+.-.+...+.. ...+++||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 46999999999999999999998865 467666421 1111111111110 134579999999999
No 268
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.96 E-value=2.2e-05 Score=65.54 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=30.6
Q ss_pred CCCceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 35 AWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 35 ~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
..+..++|.|+||+|||++++.+|..+|.+++.++
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 33556999999999999999999999999998654
No 269
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.96 E-value=1.4e-05 Score=67.41 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=26.2
Q ss_pred HHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHH
Q 041769 27 EFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 27 ~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~ 59 (204)
..++++.+....| +-|.|||||||||++|+||+
T Consensus 19 ~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3445555666666 66999999999999999999
No 270
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.95 E-value=2.4e-05 Score=59.76 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=28.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeecCC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTT 72 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~ 72 (204)
+++.|+||+|||++|..++..++.+++++....
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 789999999999999999999887777766544
No 271
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.95 E-value=1e-05 Score=63.43 Aligned_cols=44 Identities=25% Similarity=0.417 Sum_probs=32.3
Q ss_pred HHHHHHHhHHHHHHhCCCCCc--eeEEECCCCCcHHHHHHHHHHhc
Q 041769 18 DLERFVKRKEFYRNVGKAWKH--SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~--g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
++..+++.++.+.++.+..+. -.-|.||+||||||++|++-+..
T Consensus 12 ~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 12 DLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 344555666667766654444 37799999999999999998854
No 272
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.95 E-value=8.8e-06 Score=62.83 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=26.0
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
++++||||+||||+++.||..+|...+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998776654
No 273
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.95 E-value=1.3e-05 Score=65.62 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=55.0
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCc-----eE-----EeecCCc
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFD-----VY-----DLELTTF 73 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~-----~~-----~~~~~~~ 73 (204)
.+.|+.-+++.|...+..++.++.- ..|--+-|||++||||+..++.||+.+-.. ++ ..+...-
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNP------RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCC------CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 3567777777777777766654321 112336699999999999999999987221 11 1111111
Q ss_pred cC----hHHHHHHHHh---cCCCeEEEEecCCcc
Q 041769 74 KE----NMELRNMLIA---TKNKSILVVGDIDYL 100 (204)
Q Consensus 74 ~~----~~~~~~~~~~---~~~~~il~iDeid~~ 100 (204)
.. ..++.+.+.. ....++.++||+|.+
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 11 1222222222 236789999999999
No 274
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.94 E-value=9.9e-06 Score=71.70 Aligned_cols=25 Identities=40% Similarity=0.891 Sum_probs=22.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+..++|+||||+|||++++.+++.+
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhccc
Confidence 3459999999999999999999865
No 275
>PRK14530 adenylate kinase; Provisional
Probab=97.94 E-value=1.1e-05 Score=63.82 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=26.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
.++|.||||+||||+++.||+.+|.+.+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 48999999999999999999999987664
No 276
>PRK13808 adenylate kinase; Provisional
Probab=97.94 E-value=0.00028 Score=59.31 Aligned_cols=90 Identities=12% Similarity=0.211 Sum_probs=55.5
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeecCCc------------------------cChHHHHHHHHh----cCCCeE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTF------------------------KENMELRNMLIA----TKNKSI 91 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~----~~~~~i 91 (204)
++|+||||+||||+++.|+..+|...+.+ .++ .....+..++.. .....-
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~--gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST--GDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc--cHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 88999999999999999999998766554 111 111222222222 122235
Q ss_pred EEEecCCcc-----chhhhhh--ccccceeEecCCCCHHHHHHHHHH
Q 041769 92 LVVGDIDYL-----TLHILLR--SSCMDMHIHMSYCTPFRFKMLASN 131 (204)
Q Consensus 92 l~iDeid~~-----~~~a~~r--~~R~~~~i~~~~p~~~~~~~i~~~ 131 (204)
++||.+-.- .+..++. ....|..|.+..|....+..+..+
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 778887764 2222222 125778888888887766655544
No 277
>PRK06762 hypothetical protein; Provisional
Probab=97.94 E-value=1.3e-05 Score=60.50 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=27.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEeec
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL 70 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~ 70 (204)
.-++++|+||+||||+++.+++.++..++.++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 347899999999999999999999766666554
No 278
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.93 E-value=1.3e-05 Score=68.33 Aligned_cols=67 Identities=16% Similarity=0.323 Sum_probs=42.4
Q ss_pred CCCCceeEEECCCCCcHHHHHHHHHHhcCC-ceEEeecCCc-----------c-ChHHHHHHHHhcC-CCeEEEEecCCc
Q 041769 34 KAWKHSYFLYGPPGTGKSSLIAAMTNYLNF-DVYDLELTTF-----------K-ENMELRNMLIATK-NKSILVVGDIDY 99 (204)
Q Consensus 34 ~~~~~g~ll~Gp~GtGKT~la~~la~~~~~-~~~~~~~~~~-----------~-~~~~~~~~~~~~~-~~~il~iDeid~ 99 (204)
.+.++|++|||++|+|||.|+-.+...++. .-..+..... . ....+..+..... ...+|+|||++.
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeec
Confidence 356889999999999999999999998854 1111111111 1 1122223333333 344999999998
Q ss_pred c
Q 041769 100 L 100 (204)
Q Consensus 100 ~ 100 (204)
-
T Consensus 139 ~ 139 (362)
T PF03969_consen 139 T 139 (362)
T ss_pred c
Confidence 7
No 279
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00056 Score=57.30 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=45.9
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC-----------------------CceEEeecCC---ccChHHHHHHHHhc----
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN-----------------------FDVYDLELTT---FKENMELRNMLIAT---- 86 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~-----------------------~~~~~~~~~~---~~~~~~~~~~~~~~---- 86 (204)
+.++||+||.|+||+++|+.+|+.+- ++++.+.... ......++++....
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~ 104 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCc
Confidence 55699999999999999999999872 2454454421 12334555544333
Q ss_pred --CCCeEEEEecCCccch
Q 041769 87 --KNKSILVVGDIDYLTL 102 (204)
Q Consensus 87 --~~~~il~iDeid~~~~ 102 (204)
....|++||++|.++.
T Consensus 105 ~~~~~kV~iI~~ae~m~~ 122 (319)
T PRK06090 105 QLNGYRLFVIEPADAMNE 122 (319)
T ss_pred ccCCceEEEecchhhhCH
Confidence 2467999999999944
No 280
>PRK13948 shikimate kinase; Provisional
Probab=97.92 E-value=1.5e-05 Score=61.57 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=30.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+..++|.|.+|+||||+++.||+.++.+++..|
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 466999999999999999999999999998766
No 281
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.92 E-value=1.3e-05 Score=61.25 Aligned_cols=33 Identities=36% Similarity=0.675 Sum_probs=29.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEeec
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL 70 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~ 70 (204)
..++|.|++|+||||+++.+++.++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 459999999999999999999999988877663
No 282
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.92 E-value=9.5e-06 Score=62.02 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=26.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+-++|.|+||+||||+++.|+..++..++.++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~ 34 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFG 34 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccC
Confidence 34889999999999999999999877655443
No 283
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.91 E-value=1e-05 Score=61.50 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=29.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
..++|+|++|+||||+.+.||+.++.+++..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 34899999999999999999999999998765
No 284
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.00076 Score=58.53 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=54.7
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC-----CceEEeecCCccChH-
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN-----FDVYDLELTTFKENM- 77 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-----~~~~~~~~~~~~~~~- 77 (204)
.+.|.......+.+++..++..+. +..+++.|.||+|||.+..-+-..++ ...++++.-++....
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~~t---------~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLELNT---------SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhccc---------CcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 345555555666566665554332 45599999999999999887666663 234667766553221
Q ss_pred HHHHHHHh------------------------cCCCeEEEEecCCcc
Q 041769 78 ELRNMLIA------------------------TKNKSILVVGDIDYL 100 (204)
Q Consensus 78 ~~~~~~~~------------------------~~~~~il~iDeid~~ 100 (204)
.+..++.. ....-++++||+|.+
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 11111111 124679999999998
No 285
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.91 E-value=1.1e-05 Score=60.50 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=26.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
+-+.|||||||||+++.||..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999887
No 286
>PRK14531 adenylate kinase; Provisional
Probab=97.91 E-value=1.4e-05 Score=61.53 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=26.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
-++++||||+||||+++.||..+|...++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 489999999999999999999998776553
No 287
>PF05729 NACHT: NACHT domain
Probab=97.90 E-value=3.3e-05 Score=57.62 Aligned_cols=22 Identities=36% Similarity=0.788 Sum_probs=20.8
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
++++|+||+|||++++.++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999887
No 288
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.89 E-value=1.3e-05 Score=61.43 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=25.5
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
+++.||||+||||+++.|++.+|...+..
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998766553
No 289
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.88 E-value=0.00011 Score=56.85 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.6
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+.-++|+||||+|||++++.|....+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34488999999999999999998764
No 290
>PRK06547 hypothetical protein; Provisional
Probab=97.87 E-value=2.7e-05 Score=59.60 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=27.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+.-+++.|++|+||||+++.|++.++..++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 344888999999999999999999887766554
No 291
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.87 E-value=5.7e-05 Score=58.93 Aligned_cols=65 Identities=29% Similarity=0.403 Sum_probs=40.0
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHHHH-----------Hh-----------cCCCeEE
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRNML-----------IA-----------TKNKSIL 92 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~~-----------~~-----------~~~~~il 92 (204)
+.+++.||||||||++++.+...+ |..++.+.+..-. ...+.+.. .. .....+|
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~A-a~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKA-AKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHH-HHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHH-HHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEE
Confidence 347888999999999999988766 5677666554321 11122221 11 1234799
Q ss_pred EEecCCccchh
Q 041769 93 VVGDIDYLTLH 103 (204)
Q Consensus 93 ~iDeid~~~~~ 103 (204)
+|||+..+...
T Consensus 98 iVDEasmv~~~ 108 (196)
T PF13604_consen 98 IVDEASMVDSR 108 (196)
T ss_dssp EESSGGG-BHH
T ss_pred EEecccccCHH
Confidence 99999998443
No 292
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.87 E-value=3.6e-05 Score=68.63 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=58.1
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHH-HHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEee----cCCcc--
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKE-FYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE----LTTFK-- 74 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~----~~~~~-- 74 (204)
|-.++|.+.+|..| .+..|-+-++ .-....+..-.+++++|.||+|||.++++.+.-++..++..= .+++.
T Consensus 344 ~PsIyGhe~VK~Gi--lL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaa 421 (764)
T KOG0480|consen 344 FPSIYGHELVKAGI--LLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAA 421 (764)
T ss_pred CccccchHHHHhhH--HHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEE
Confidence 34577777777776 3344433221 112222333346999999999999999999998888777631 12221
Q ss_pred ---ChHHHHHHHHh----cCCCeEEEEecCCcc
Q 041769 75 ---ENMELRNMLIA----TKNKSILVVGDIDYL 100 (204)
Q Consensus 75 ---~~~~~~~~~~~----~~~~~il~iDeid~~ 100 (204)
....-.=++++ +..++|=.|||+|.+
T Consensus 422 VvkD~esgdf~iEAGALmLADnGICCIDEFDKM 454 (764)
T KOG0480|consen 422 VVKDEESGDFTIEAGALMLADNGICCIDEFDKM 454 (764)
T ss_pred EEecCCCCceeeecCcEEEccCceEEechhccc
Confidence 00000001111 146789999999999
No 293
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.87 E-value=5.5e-05 Score=59.17 Aligned_cols=70 Identities=16% Similarity=0.294 Sum_probs=43.5
Q ss_pred HHhCCCCCceeEEECCCCCcHHHHHHHHHHhc-----CCceE----Ee-------ecC---Cc----c----ChHHHHHH
Q 041769 30 RNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL-----NFDVY----DL-------ELT---TF----K----ENMELRNM 82 (204)
Q Consensus 30 ~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~----~~-------~~~---~~----~----~~~~~~~~ 82 (204)
.++.+..+..++|.||+|+||||+++.++... |.++- .+ .+. ++ . ....+.++
T Consensus 18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~i 97 (199)
T cd03283 18 NDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEI 97 (199)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHH
Confidence 33444445568999999999999999999644 43321 00 000 00 0 01334566
Q ss_pred HHhcC--CCeEEEEecCCc
Q 041769 83 LIATK--NKSILVVGDIDY 99 (204)
Q Consensus 83 ~~~~~--~~~il~iDeid~ 99 (204)
+.... .+.++++||.-.
T Consensus 98 L~~~~~~~p~llllDEp~~ 116 (199)
T cd03283 98 VEKAKKGEPVLFLLDEIFK 116 (199)
T ss_pred HHhccCCCCeEEEEecccC
Confidence 66666 889999999644
No 294
>PRK13946 shikimate kinase; Provisional
Probab=97.87 E-value=1.6e-05 Score=61.38 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=30.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEeec
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL 70 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~ 70 (204)
+..++|.|++|+|||++++.||+.+|.+++..+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 3459999999999999999999999999887763
No 295
>PTZ00301 uridine kinase; Provisional
Probab=97.86 E-value=0.00045 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.0
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.+.|+||+||||+++.|+..+
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 7799999999999999998766
No 296
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.86 E-value=1.9e-05 Score=63.11 Aligned_cols=91 Identities=12% Similarity=0.189 Sum_probs=55.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------------------------ChHHHH----HHHHh--cCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------------------------ENMELR----NMLIA--TKN 88 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------------------------~~~~~~----~~~~~--~~~ 88 (204)
-++|.||||+||||+++.||+.+|.+.++++ ++. ....+. +.+.. ...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g--dllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~ 85 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG--NILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDDC 85 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC--hHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcccc
Confidence 3899999999999999999999998776643 210 011111 11222 112
Q ss_pred CeEEEEecCCccch--hhhhhccccceeEecCCCCHHHHHHHHHH
Q 041769 89 KSILVVGDIDYLTL--HILLRSSCMDMHIHMSYCTPFRFKMLASN 131 (204)
Q Consensus 89 ~~il~iDeid~~~~--~a~~r~~R~~~~i~~~~p~~~~~~~i~~~ 131 (204)
...++||.+-.-.. ..+....+.+..+.+..|.......+..+
T Consensus 86 ~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R 130 (229)
T PTZ00088 86 FKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGR 130 (229)
T ss_pred CceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcC
Confidence 24578888744311 12223357778888888877665555554
No 297
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.85 E-value=1.8e-05 Score=60.09 Aligned_cols=31 Identities=29% Similarity=0.543 Sum_probs=28.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
.++|+|++|+|||++++.||+.+|.+++..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 3889999999999999999999999988765
No 298
>PF13245 AAA_19: Part of AAA domain
Probab=97.85 E-value=3.1e-05 Score=51.14 Aligned_cols=32 Identities=41% Similarity=0.662 Sum_probs=23.2
Q ss_pred eEEECCCCCcHH-HHHHHHHHhc------CCceEEeecC
Q 041769 40 YFLYGPPGTGKS-SLIAAMTNYL------NFDVYDLELT 71 (204)
Q Consensus 40 ~ll~Gp~GtGKT-~la~~la~~~------~~~~~~~~~~ 71 (204)
+++.|||||||| ++++.++..+ +..+..+...
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 556999999999 6666666666 5566666554
No 299
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.85 E-value=2.3e-05 Score=63.96 Aligned_cols=28 Identities=25% Similarity=0.584 Sum_probs=24.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
...+++.||+|+||||+++++...++..
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ceEEEEECCCccccchHHHHHhhhcccc
Confidence 4559999999999999999999998544
No 300
>PRK06696 uridine kinase; Validated
Probab=97.84 E-value=6.7e-05 Score=59.63 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=30.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFK 74 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~ 74 (204)
.-|.+.|+||+||||+++.|+..+ |.+++.+.+.++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 348899999999999999999999 6677777766653
No 301
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.83 E-value=1.5e-05 Score=72.34 Aligned_cols=95 Identities=19% Similarity=0.209 Sum_probs=55.6
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhC-CCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEe----ecCCccC---
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVG-KAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL----ELTTFKE--- 75 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~----~~~~~~~--- 75 (204)
.+.|.+.+|+.+ .++.|-+.++...+.+ +..-.++||+|.||||||.|++.+++.++..++.- +..++..
T Consensus 287 sIyG~e~VKkAi--lLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAI--LLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHH--HHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 456777777666 3444433322222111 22224599999999999999999999887776652 1111111
Q ss_pred --hHHHHHHHHh----cCCCeEEEEecCCcc
Q 041769 76 --NMELRNMLIA----TKNKSILVVGDIDYL 100 (204)
Q Consensus 76 --~~~~~~~~~~----~~~~~il~iDeid~~ 100 (204)
...-.+.+.. .+.+++.+|||+|.+
T Consensus 365 rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 365 RDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred EccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 1000111111 147899999999987
No 302
>PRK02496 adk adenylate kinase; Provisional
Probab=97.83 E-value=1.7e-05 Score=60.99 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=25.9
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
+++.||||+||||+++.|+..++...+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999998776653
No 303
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.82 E-value=3.5e-05 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.+.|+||+|||++++.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
No 304
>PRK14528 adenylate kinase; Provisional
Probab=97.82 E-value=1.9e-05 Score=61.04 Aligned_cols=92 Identities=16% Similarity=0.233 Sum_probs=58.0
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------------------------ChH----HHHHHHHhcCCCeE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------------------------ENM----ELRNMLIATKNKSI 91 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------------------------~~~----~~~~~~~~~~~~~i 91 (204)
+++.||||+||||+++.++..+|.+.+... ++. ... .+.+.+........
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~~~~~is~~--~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERLSIPQISTG--DILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeeeCC--HHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 889999999999999999999987776532 210 011 11222222223345
Q ss_pred EEEecCCccc-----hhhhhh--ccccceeEecCCCCHHHHHHHHHHhh
Q 041769 92 LVVGDIDYLT-----LHILLR--SSCMDMHIHMSYCTPFRFKMLASNYF 133 (204)
Q Consensus 92 l~iDeid~~~-----~~a~~r--~~R~~~~i~~~~p~~~~~~~i~~~~~ 133 (204)
++||++..-. +..++. ....+..|.+..|.......+..+..
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~ 130 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAE 130 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcc
Confidence 7889875531 222322 13688888888888877766665543
No 305
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.82 E-value=7.4e-05 Score=60.47 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=22.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
-+++.||+|+|||++++.+++.+..
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 3999999999999999999998854
No 306
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.82 E-value=1.9e-05 Score=68.04 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=40.7
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc----CCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL----NFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
+.++++.||+|||||+++.+++... | ...+.+.+-.... .+.+.......+|+|||+..+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~-~~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS-TRQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH-HHHHhhhccCCEEEEEcCCCC
Confidence 4569999999999999999988862 3 2222222211111 144455667889999999997
No 307
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.81 E-value=2e-05 Score=61.97 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=26.1
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
++++||||+||||+++.||..+|...++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998777654
No 308
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.80 E-value=1.6e-05 Score=56.89 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
|+|.|+|||||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999996
No 309
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.80 E-value=0.00022 Score=58.31 Aligned_cols=99 Identities=18% Similarity=0.103 Sum_probs=55.0
Q ss_pred CceeEEECCCCCcHHHHHHHHHHh--cCCc---eEEeecCCccCh------------------------HHHHHHHHhc-
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNY--LNFD---VYDLELTTFKEN------------------------MELRNMLIAT- 86 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~------------------------~~~~~~~~~~- 86 (204)
..-+.++|++|+|||++|+.+++. .... ++.++.+..... ......+...
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 345889999999999999999988 3322 233443321110 1111111111
Q ss_pred -CCCeEEEEecCCccchh-----------------------hhhhc-cccceeEecCCCCHHHHHHHHHHhhCC
Q 041769 87 -KNKSILVVGDIDYLTLH-----------------------ILLRS-SCMDMHIHMSYCTPFRFKMLASNYFGI 135 (204)
Q Consensus 87 -~~~~il~iDeid~~~~~-----------------------a~~r~-~R~~~~i~~~~p~~~~~~~i~~~~~~~ 135 (204)
..+.+|++|+++....- ..... +.....+.+...+.++...++..+...
T Consensus 99 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 172 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGR 172 (287)
T ss_dssp CCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTS
T ss_pred ccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35899999999887110 00000 111356788888888777777766543
No 310
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.80 E-value=3.5e-05 Score=63.17 Aligned_cols=33 Identities=36% Similarity=0.485 Sum_probs=27.7
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
++++||.||||||||.+|-++++++|..+=.+.
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~kvPFcp 96 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGPKVPFCP 96 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCCCCCccc
Confidence 577999999999999999999999976443333
No 311
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.79 E-value=6.7e-05 Score=57.64 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.6
Q ss_pred CCCceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 35 AWKHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 35 ~~~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
..+.-+.+.||+|+|||||++.|++...
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3344488999999999999999999874
No 312
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.79 E-value=3.3e-06 Score=66.16 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhc
Q 041769 26 KEFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 26 ~~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+.++.+.+....| +.+.||+|+||||++|+|...-
T Consensus 15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 33444445444444 8899999999999999998854
No 313
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.79 E-value=6.2e-05 Score=70.24 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=23.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
..++||+|+||||||.+|+++++..+..
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~ 519 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRS 519 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCcc
Confidence 3469999999999999999999976543
No 314
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.79 E-value=2.4e-05 Score=61.79 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=26.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
++++||||+||||+++.||..+|...+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 88999999999999999999999776664
No 315
>PRK14527 adenylate kinase; Provisional
Probab=97.78 E-value=2.4e-05 Score=60.67 Aligned_cols=31 Identities=23% Similarity=0.507 Sum_probs=26.4
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
+.-++++||||+||||+++.|+..++...+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3448999999999999999999999876554
No 316
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.78 E-value=2.7e-05 Score=60.10 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=25.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
.+.|.||+|+||||+++.|++.++..+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 48899999999999999999988765544
No 317
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.78 E-value=0.00012 Score=56.42 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=22.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+-++|+||||+||+++++.|....+
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~ 27 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIP 27 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4589999999999999999999863
No 318
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.78 E-value=8.1e-05 Score=67.58 Aligned_cols=27 Identities=41% Similarity=0.604 Sum_probs=24.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.+++|+||||||||++++++++.++..
T Consensus 38 ~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 38 RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 469999999999999999999999765
No 319
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.77 E-value=6.3e-05 Score=61.85 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=53.5
Q ss_pred CCCCceeEEECCCCCcHHHHHHHHHHh------cCCceEEeecCCccChHHHHHHHHhc-----------------CCCe
Q 041769 34 KAWKHSYFLYGPPGTGKSSLIAAMTNY------LNFDVYDLELTTFKENMELRNMLIAT-----------------KNKS 90 (204)
Q Consensus 34 ~~~~~g~ll~Gp~GtGKT~la~~la~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 90 (204)
+.....+||.||.|.|||.+++-+... +.-+++.+|+..+.+...+..+|... ..++
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 333455999999999999999988653 36689999999998877776666554 2578
Q ss_pred EEEEecCCcc
Q 041769 91 ILVVGDIDYL 100 (204)
Q Consensus 91 il~iDeid~~ 100 (204)
++|+|||..+
T Consensus 285 mlfldeigel 294 (531)
T COG4650 285 MLFLDEIGEL 294 (531)
T ss_pred eEehHhhhhc
Confidence 9999999988
No 320
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.76 E-value=0.00011 Score=57.48 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.6
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
++|.|+||+||||+++-||+.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999993
No 321
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.75 E-value=9.9e-05 Score=57.81 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=32.5
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT 72 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~ 72 (204)
|++.+.-++++||||+|||+++..++... +..+++++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 56666679999999999999998888654 66788888765
No 322
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.75 E-value=5.3e-05 Score=63.68 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=42.4
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC-CceEEeecC
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN-FDVYDLELT 71 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-~~~~~~~~~ 71 (204)
+++|.+++..++.+.+...... ++ ...+-++|.||+|+|||++++.|.+.+. .+++.+..+
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g------~~-~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~ 123 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQG------LE-ERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGC 123 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhc------cC-ccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCC
Confidence 7888888888876655533221 11 1234588999999999999999999884 355555433
No 323
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.75 E-value=8.9e-05 Score=54.92 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..+.+.||+|+|||||++++++.+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~ 52 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP 52 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 344889999999999999999998743
No 324
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.74 E-value=0.00018 Score=62.70 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=29.4
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTF 73 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~ 73 (204)
+.-++|+|++|+||||++..+|..+ |..+..+++..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4558999999999999999999877 566666665443
No 325
>PRK08233 hypothetical protein; Provisional
Probab=97.73 E-value=3.9e-05 Score=58.50 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=24.5
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC-CceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN-FDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~-~~~~~~~ 69 (204)
+.+.|+||+||||+++.|+..++ ..++..+
T Consensus 6 I~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 77889999999999999999996 4444443
No 326
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.73 E-value=0.00016 Score=55.07 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=27.8
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeecCC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTT 72 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~ 72 (204)
+++.|++|+|||++|..++...+.+++++....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~ 34 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAE 34 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccC
Confidence 689999999999999999988777777765443
No 327
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=8.2e-05 Score=55.69 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=23.5
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+.-+.+.||+|+|||||+++|++.+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~ 51 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 345889999999999999999998754
No 328
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.72 E-value=0.00011 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.696 Sum_probs=21.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.-+++.|+||+||||++.-++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 348999999999999999999887
No 329
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.72 E-value=3.5e-05 Score=60.59 Aligned_cols=22 Identities=41% Similarity=0.815 Sum_probs=17.1
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999998766666655
No 330
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.72 E-value=3.3e-05 Score=57.13 Aligned_cols=31 Identities=26% Similarity=0.540 Sum_probs=27.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
..+|+.|-|||||||++..||..++...+.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 4599999999999999999999998877654
No 331
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.71 E-value=4.7e-05 Score=55.68 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=24.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+.-++|.|+.|+||||+++.+++.++.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 445889999999999999999999975
No 332
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.71 E-value=3.6e-05 Score=67.65 Aligned_cols=32 Identities=25% Similarity=0.570 Sum_probs=28.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+-+||+||+|+||||.++.|+.++|..+....
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 34889999999999999999999999888765
No 333
>PLN02200 adenylate kinase family protein
Probab=97.71 E-value=4.6e-05 Score=61.13 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=25.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
-+++.|+||+||||+++.|++.+|...+.
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g~~his 73 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFGFKHLS 73 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 47899999999999999999999875443
No 334
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.00013 Score=55.50 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=32.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFK 74 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~ 74 (204)
.-+.|.|.||+||||+|.++.+.+ |..++.+|..+++
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 347799999999999999999998 8899999887663
No 335
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.70 E-value=4.9e-05 Score=56.66 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=26.3
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEeec
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLEL 70 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~ 70 (204)
++++|+||+||||+++.|++.+ +..++.++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 6899999999999999999998 666666654
No 336
>PRK04040 adenylate kinase; Provisional
Probab=97.70 E-value=4.7e-05 Score=59.08 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=26.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTT 72 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~ 72 (204)
.-++++|+||+||||+++.+++.++..+..++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~ 37 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGD 37 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecch
Confidence 34889999999999999999999942233344444
No 337
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.69 E-value=0.00016 Score=57.45 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=27.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc--------CCceEEeecCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL--------NFDVYDLELTT 72 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~--------~~~~~~~~~~~ 72 (204)
..|+.||||+||||++|-||+.+ +..+..+|-++
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers 180 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS 180 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc
Confidence 38899999999999999999987 34566666543
No 338
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.69 E-value=0.00011 Score=58.32 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=24.5
Q ss_pred HHhCCCCCce--eEEECCCCCcHHHHHHHHHHhc
Q 041769 30 RNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 30 ~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~ 61 (204)
....+....| +.+.||+|||||||+..++...
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3344444455 8899999999999999998843
No 339
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.69 E-value=2.9e-05 Score=57.80 Aligned_cols=26 Identities=23% Similarity=0.522 Sum_probs=22.7
Q ss_pred EECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 42 LYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 42 l~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
+.||||+||||+++.||..+|...++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999999865544
No 340
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.68 E-value=0.00035 Score=60.88 Aligned_cols=63 Identities=21% Similarity=0.340 Sum_probs=43.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecCCcc----------------------ChHHHHHHHHhcCCCe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELTTFK----------------------ENMELRNMLIATKNKS 90 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~ 90 (204)
..++|+||+|+||||++..||..+ +..+..+++...+ ...++...+.......
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 458899999999999988887654 4567777766532 1123344444455678
Q ss_pred EEEEecCCcc
Q 041769 91 ILVVGDIDYL 100 (204)
Q Consensus 91 il~iDeid~~ 100 (204)
+|+||.....
T Consensus 302 lVlIDt~G~~ 311 (424)
T PRK05703 302 VILIDTAGRS 311 (424)
T ss_pred EEEEeCCCCC
Confidence 9999988665
No 341
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.67 E-value=0.00071 Score=58.01 Aligned_cols=27 Identities=30% Similarity=0.360 Sum_probs=24.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
-.|+|+.|+.|+||||++|+|+..++.
T Consensus 38 iggvLI~G~kGtaKSt~~Rala~LLp~ 64 (423)
T COG1239 38 IGGALIAGEKGTAKSTLARALADLLPE 64 (423)
T ss_pred cceeEEecCCCccHHHHHHHHHHhCCc
Confidence 357999999999999999999999953
No 342
>PRK01184 hypothetical protein; Provisional
Probab=97.67 E-value=4.6e-05 Score=58.57 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=24.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
++++||||+||||+++ +++.+|.+++..
T Consensus 4 i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 4 IGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 7899999999999987 788899877664
No 343
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.66 E-value=0.00032 Score=57.32 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.+++.||+|+||||+++++...+.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhC
Confidence 388999999999999999987774
No 344
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.66 E-value=0.00014 Score=62.26 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=21.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.+++||||+|||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 89999999999999999998773
No 345
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.66 E-value=8.9e-05 Score=69.32 Aligned_cols=61 Identities=25% Similarity=0.460 Sum_probs=50.6
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHhcC--------------------CCeEEEEecCCc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATK--------------------NKSILVVGDIDY 99 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~il~iDeid~ 99 (204)
++++||||+|||+.+.++|..+|..++..|.+..++...+...+..+. ...+|++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 589999999999999999999999999999998876655554444431 245999999999
Q ss_pred c
Q 041769 100 L 100 (204)
Q Consensus 100 ~ 100 (204)
+
T Consensus 440 ~ 440 (871)
T KOG1968|consen 440 M 440 (871)
T ss_pred c
Confidence 8
No 346
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.65 E-value=4.8e-05 Score=62.91 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=24.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc-CCceEE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL-NFDVYD 67 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~-~~~~~~ 67 (204)
-+++.|+|||||||+++.|++.+ +..++.
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 47889999999999999999998 544444
No 347
>PRK14526 adenylate kinase; Provisional
Probab=97.65 E-value=5.3e-05 Score=59.83 Aligned_cols=28 Identities=32% Similarity=0.688 Sum_probs=24.8
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
++|+||||+||||+++.|++.++...+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999998876544
No 348
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.65 E-value=5.3e-05 Score=57.18 Aligned_cols=29 Identities=24% Similarity=0.581 Sum_probs=26.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
+.++|++|+|||++++.+++.+|.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999887664
No 349
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.64 E-value=4.2e-05 Score=59.07 Aligned_cols=26 Identities=23% Similarity=0.635 Sum_probs=23.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+..+++.||+|+||||+++++++.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44599999999999999999999774
No 350
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.64 E-value=0.0025 Score=55.89 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=23.6
Q ss_pred Cce-eEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 37 KHS-YFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 37 ~~g-~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
|.| +|+.||.|+||||++.++.+.++.+
T Consensus 257 p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 257 PQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 455 7788999999999999999988543
No 351
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.63 E-value=3.5e-05 Score=61.64 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=28.6
Q ss_pred HHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 28 FYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 28 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.++++++....| +-+.||+|||||||++.+|+.....
T Consensus 18 vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344555555555 8899999999999999999987443
No 352
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.63 E-value=6.1e-05 Score=59.09 Aligned_cols=31 Identities=35% Similarity=0.623 Sum_probs=25.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeec
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL 70 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~ 70 (204)
++++||+|||||.++-++|+.+|.+++.+|-
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dr 34 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDR 34 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-S
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecc
Confidence 7899999999999999999999999999873
No 353
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.63 E-value=5.1e-05 Score=57.20 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=20.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVY 66 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~ 66 (204)
|.|+|+||||||||++.|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 76655
No 354
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.62 E-value=0.00017 Score=56.95 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=31.4
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
|++.+.-++++|+||+|||+++..+|... +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 56666669999999999999999998765 5677777654
No 355
>PRK04182 cytidylate kinase; Provisional
Probab=97.62 E-value=6.2e-05 Score=57.22 Aligned_cols=29 Identities=24% Similarity=0.520 Sum_probs=26.5
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
+.+.|++|+||||+++.||..+|.+++..
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 78999999999999999999999887763
No 356
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00023 Score=56.37 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=28.2
Q ss_pred HHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 27 EFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 27 ~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
+.++..++..+.| -.+.||+|+|||||+.+|++.-+..+
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~V 58 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV 58 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceE
Confidence 4445555544454 56889999999999999999655443
No 357
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.62 E-value=0.00014 Score=62.23 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=29.4
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeec
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLEL 70 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~ 70 (204)
|+..+.-++++|+||+|||+++..++..+ +.++++++.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~ 118 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG 118 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 45555568999999999999999988765 346766654
No 358
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.61 E-value=8.5e-05 Score=67.55 Aligned_cols=47 Identities=28% Similarity=0.408 Sum_probs=33.9
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
|+++.|+++.+..+...+. .+++++|+||||+|||++++++++.++.
T Consensus 30 ~~~vigq~~a~~~L~~~~~---------------~~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAK---------------QRRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred HHHcCChHHHHHHHHHHHH---------------hCCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 5667777655554433222 1246999999999999999999999864
No 359
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.61 E-value=9.2e-05 Score=58.11 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=26.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC-CceEEeecC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN-FDVYDLELT 71 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~-~~~~~~~~~ 71 (204)
.-+.+.|+||+|||||++.|++.++ ..+..++..
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 3488999999999999999999983 344444443
No 360
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.61 E-value=0.00015 Score=63.48 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=31.1
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
|++.+.-++++|+||+|||+|+..++... +.++++++..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 46666668999999999999999998866 5677777653
No 361
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.61 E-value=0.00013 Score=63.85 Aligned_cols=95 Identities=17% Similarity=0.268 Sum_probs=53.5
Q ss_pred cccCChhHHHHHHHHHHHHHHhHH-HHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEee----cCCccC---
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKE-FYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE----LTTFKE--- 75 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~----~~~~~~--- 75 (204)
+++|..++|+.+ ....|-+.++ +-+.+.......+||.|.|||.||.|++-+-+-.+..++..- +.++..
T Consensus 332 SIfG~~DiKkAi--aClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAI--ACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHH--HHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 356676777666 2222333222 222222233345999999999999999998887766665521 111110
Q ss_pred -hHHHHHHH-----HhcCCCeEEEEecCCcc
Q 041769 76 -NMELRNML-----IATKNKSILVVGDIDYL 100 (204)
Q Consensus 76 -~~~~~~~~-----~~~~~~~il~iDeid~~ 100 (204)
+..-++.. .-++.++|++|||+|.+
T Consensus 410 RD~~tReFylEGGAMVLADgGVvCIDEFDKM 440 (729)
T KOG0481|consen 410 RDPSTREFYLEGGAMVLADGGVVCIDEFDKM 440 (729)
T ss_pred ecCCcceEEEecceEEEecCCEEEeehhhcc
Confidence 00001110 01246899999999999
No 362
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.61 E-value=0.00014 Score=57.51 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.0
Q ss_pred ceeEEECCCCCcHHHHHHHHHH
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~ 59 (204)
+.++|+||+|+|||++++.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5589999999999999999983
No 363
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.60 E-value=7.5e-05 Score=64.40 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=23.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
..|+|+.||||.||||||+++|.-+
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHH
Confidence 3689999999999999999999987
No 364
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.60 E-value=5.5e-05 Score=57.82 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.9
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+++.||||+||||++++|+..++.
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCc
Confidence 789999999999999999998753
No 365
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.60 E-value=9.2e-05 Score=57.57 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=24.1
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC-CceEEeec
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN-FDVYDLEL 70 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~-~~~~~~~~ 70 (204)
+.+.||+|+||||++++|++.++ ..+..+.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~ 33 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQ 33 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 67899999999999999999872 33444433
No 366
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00054 Score=58.84 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=42.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCcc----------------------ChHHHHHHHHhcC---C
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFK----------------------ENMELRNMLIATK---N 88 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~---~ 88 (204)
++-++|+||+|+||||++..||..+ |..+..+++...+ ....+.+.+.... .
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3458999999999999999999877 4566666654432 1123333333332 3
Q ss_pred CeEEEEecCCcc
Q 041769 89 KSILVVGDIDYL 100 (204)
Q Consensus 89 ~~il~iDeid~~ 100 (204)
..+|+||-....
T Consensus 321 ~DvVLIDTaGRs 332 (436)
T PRK11889 321 VDYILIDTAGKN 332 (436)
T ss_pred CCEEEEeCcccc
Confidence 468888888776
No 367
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.60 E-value=7.4e-05 Score=60.34 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=26.5
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
++|+|+||+||||+++.+++.+ +.+++.++..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D 36 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTD 36 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccH
Confidence 6899999999999999999988 4566666543
No 368
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.59 E-value=5.2e-05 Score=57.46 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=26.0
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+.+.|.|||||||+++.|+ .+|..++.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 7899999999999999999 8988887754
No 369
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.59 E-value=7.7e-05 Score=56.01 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=30.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCcc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFK 74 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~ 74 (204)
-+.|.|.||+||||+|++|.+.+ |.+++.++...+.
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 37899999999999999999988 7889998876553
No 370
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.00026 Score=55.20 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=28.8
Q ss_pred HHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 27 EFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 27 ~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..++..+....| +.+.||+|+||||++|.||..+.+
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC
Confidence 3556666655555 789999999999999999996643
No 371
>PRK04296 thymidine kinase; Provisional
Probab=97.59 E-value=0.00035 Score=54.20 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=24.0
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~ 69 (204)
.+++||+|+|||+++..++..+ +..++.+.
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 6889999999999888887766 56666553
No 372
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.58 E-value=8.9e-05 Score=58.19 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.9
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+.+.||+|+||||++++|++.++.
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 779999999999999999998763
No 373
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.57 E-value=0.00025 Score=55.40 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHH
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~ 59 (204)
+.-+++.||+|+||||+++.++.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 34489999999999999999994
No 374
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.57 E-value=0.00011 Score=56.03 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=26.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC---CceEEeec
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLEL 70 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~~ 70 (204)
+.-++|.|+||+||||+++.+++.+. ..++.++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 34488999999999999999999885 33555544
No 375
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.57 E-value=9e-05 Score=57.85 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=30.3
Q ss_pred CCceeEEECCCCCcHHHHHHHHHHhc-CCceEEeecCCcc
Q 041769 36 WKHSYFLYGPPGTGKSSLIAAMTNYL-NFDVYDLELTTFK 74 (204)
Q Consensus 36 ~~~g~ll~Gp~GtGKT~la~~la~~~-~~~~~~~~~~~~~ 74 (204)
.|.-+++.|+||+|||+++..+...+ +..++.++...+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 35568899999999999999999998 7888888887764
No 376
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.56 E-value=0.00018 Score=61.81 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=21.5
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
++++||||+|||++++.+++.+.
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhc
Confidence 89999999999999999999864
No 377
>PRK14529 adenylate kinase; Provisional
Probab=97.56 E-value=5.4e-05 Score=60.25 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=24.8
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVY 66 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~ 66 (204)
++|.||||+||||.++.|+..++...+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 789999999999999999999987655
No 378
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.00015 Score=54.10 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=35.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIA 85 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (204)
..+++.|++|+||||++++++.++++.++. ..++....+..++-..
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~d--gDd~Hp~~NveKM~~G 58 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFID--GDDLHPPANVEKMTQG 58 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccc--cccCCCHHHHHHHhcC
Confidence 348899999999999999999999988755 5556566665555433
No 379
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.55 E-value=0.00014 Score=57.68 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=32.2
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
|++.+.-++++||||+|||+++..++... +.++++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56666668999999999999999998755 6778888776
No 380
>PF13479 AAA_24: AAA domain
Probab=97.54 E-value=6.2e-05 Score=59.46 Aligned_cols=57 Identities=23% Similarity=0.479 Sum_probs=36.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEeec--CC-------------ccChHHHHHHHHh----cCCCeEEEEecCCc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL--TT-------------FKENMELRNMLIA----TKNKSILVVGDIDY 99 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~----~~~~~il~iDeid~ 99 (204)
.+++||+||+|||+++..+ +.++ .++. +. +.+-.++.+.+.. ......|+||.++.
T Consensus 5 ~~lIyG~~G~GKTt~a~~~----~k~l-~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL----PKPL-FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred EEEEECCCCCCHHHHHHhC----CCeE-EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 4899999999999999887 2222 2222 21 1122444454433 24678999999887
Q ss_pred c
Q 041769 100 L 100 (204)
Q Consensus 100 ~ 100 (204)
+
T Consensus 80 ~ 80 (213)
T PF13479_consen 80 L 80 (213)
T ss_pred H
Confidence 6
No 381
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.54 E-value=0.00012 Score=58.24 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=26.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC-----CceEEeecCCc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN-----FDVYDLELTTF 73 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~-----~~~~~~~~~~~ 73 (204)
+.+.||||+||||+++.|++.+. ..+..+.+.++
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 56889999999999999999883 34555555543
No 382
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.54 E-value=9.8e-05 Score=46.60 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=20.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
..+|+||+|+||||++-|+.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999988765
No 383
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.54 E-value=0.00013 Score=55.90 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=25.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
++++||||+|||+++..++... |.+++++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999998876654 6677777654
No 384
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.54 E-value=0.00013 Score=55.55 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=27.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
.-+.|.|+||+||||+++.|++.+ +..+..++..
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 348899999999999999999988 4456666554
No 385
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.53 E-value=0.00011 Score=56.54 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=27.1
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTF 73 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~ 73 (204)
+.+.|+||+||||+++.|+..+ +.++..++..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 6789999999999999999997 455666655443
No 386
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.53 E-value=0.00016 Score=57.73 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=32.7
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT 72 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~ 72 (204)
|++.+..++++|+||+|||+++..++... |..+++++...
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 67777779999999999999999997653 67888877643
No 387
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.53 E-value=7.3e-05 Score=60.33 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=28.3
Q ss_pred HHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 28 FYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 28 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
.+.++.+....| +.+.||+|+|||||++++.+.+.+.-
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~ 58 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS 58 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCc
Confidence 444455444444 77999999999999999999765443
No 388
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.53 E-value=0.00019 Score=55.06 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
-+.+.|++|+||||+++++++.++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 37899999999999999999998764
No 389
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.52 E-value=7.1e-05 Score=58.16 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
|.+.||||+||||+|+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999996
No 390
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.52 E-value=0.00015 Score=56.68 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=26.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTF 73 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~ 73 (204)
+-++|+||+|+||||.+--||..+ +..+..+++...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 458899999999999888888776 566666665554
No 391
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.51 E-value=0.00078 Score=55.86 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=29.5
Q ss_pred HHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 28 FYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 28 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
+++++.+..+.| +.|.||+|+||||++++|++.....--.
T Consensus 20 ~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~ 61 (293)
T COG1131 20 ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE 61 (293)
T ss_pred EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 344445544555 8899999999999999999977554333
No 392
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.51 E-value=0.00013 Score=57.88 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=30.5
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc----CCceEEeecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL----NFDVYDLELTT 72 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~----~~~~~~~~~~~ 72 (204)
|++.+.-+++.||||+|||+++..++... |.++++++...
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 67777779999999999999988766544 78888887643
No 393
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.51 E-value=0.00012 Score=57.27 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=24.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
.-+++.|+||+||||+++.++..++...
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 3488999999999999999999988754
No 394
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.50 E-value=0.00014 Score=59.17 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=30.8
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
|++.+.-++++||||+|||+++..++... |.++++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 56666679999999999999988876643 6677777764
No 395
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.50 E-value=0.00011 Score=54.03 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.1
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
+.+.||+|+|||++++.|++.++..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999987543
No 396
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.50 E-value=0.00036 Score=57.24 Aligned_cols=37 Identities=30% Similarity=0.360 Sum_probs=29.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTF 73 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~ 73 (204)
+.-++|+||+|+||||++..+|..+ |..+..+++...
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3458889999999999999998877 667777766544
No 397
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.50 E-value=0.00018 Score=58.43 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=32.9
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT 72 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~ 72 (204)
|++.+..++++|+||||||+|+..++... |.+++.++...
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 57777779999999999999888777665 67788887765
No 398
>PLN02674 adenylate kinase
Probab=97.50 E-value=0.00013 Score=58.82 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=26.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
..++|.||||+||||.++.||+.++...++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 459999999999999999999999865544
No 399
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.49 E-value=0.00023 Score=59.64 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=27.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT 72 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~ 72 (204)
.-++|+||||+||||++..||..+ +..+..++...
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 348899999999999999999987 45566655543
No 400
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0067 Score=50.20 Aligned_cols=64 Identities=16% Similarity=0.279 Sum_probs=42.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC------------------------CceEEeecCC-ccChHHHHHHHHhcC----
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN------------------------FDVYDLELTT-FKENMELRNMLIATK---- 87 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~---- 87 (204)
+.++||+|| +||+++|+.+|+.+- ++++.+...+ ......++++.....
T Consensus 24 ~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~ 101 (290)
T PRK07276 24 NHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGY 101 (290)
T ss_pred ceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCcc
Confidence 566999996 689999999998772 2233333321 122355666554442
Q ss_pred --CCeEEEEecCCccch
Q 041769 88 --NKSILVVGDIDYLTL 102 (204)
Q Consensus 88 --~~~il~iDeid~~~~ 102 (204)
...|++||++|.++.
T Consensus 102 ~~~~kV~II~~ad~m~~ 118 (290)
T PRK07276 102 EGKQQVFIIKDADKMHV 118 (290)
T ss_pred cCCcEEEEeehhhhcCH
Confidence 457999999999954
No 401
>PLN02165 adenylate isopentenyltransferase
Probab=97.48 E-value=0.00013 Score=61.28 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=26.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
-++|.||+|+|||+++..||+.++..++..|
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 4889999999999999999999987665543
No 402
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.00068 Score=55.98 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=45.7
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC----------------CceEEeecCCc---cChHHHHHHHHhc------CCCeE
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN----------------FDVYDLELTTF---KENMELRNMLIAT------KNKSI 91 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~----------------~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~i 91 (204)
+.++||+||+|+||+.+|.++|+.+- ++++.+.+..- .+...++++.... ....+
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 45699999999999999999999883 23444433221 2334455544443 24579
Q ss_pred EEEecCCccchh
Q 041769 92 LVVGDIDYLTLH 103 (204)
Q Consensus 92 l~iDeid~~~~~ 103 (204)
++||++|.++..
T Consensus 99 ~ii~~ad~mt~~ 110 (290)
T PRK05917 99 YIIHEADRMTLD 110 (290)
T ss_pred EEEechhhcCHH
Confidence 999999999543
No 403
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.48 E-value=0.00041 Score=55.22 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=29.8
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---------CCceEEeecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---------NFDVYDLELTT 72 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---------~~~~~~~~~~~ 72 (204)
|++.+.-+.++||||+|||+++..++... +..+++++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 45555668999999999999999998553 24566666544
No 404
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.48 E-value=0.0002 Score=57.45 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=31.5
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHh---cCCceEEeecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNY---LNFDVYDLELTT 72 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~---~~~~~~~~~~~~ 72 (204)
|++.+..++++||||+|||+++..++.. -|.++++++...
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 6777777999999999999998766554 267787777653
No 405
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.47 E-value=0.00036 Score=59.44 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=21.3
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.+++||||+|||++++.+++.+.
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999773
No 406
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.47 E-value=0.00013 Score=55.90 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=25.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+.++|++|+||||+++.+++ +|.+++..+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 67999999999999999999 787776654
No 407
>PLN02199 shikimate kinase
Probab=97.47 E-value=0.00014 Score=59.98 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=30.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+..++|.|.+|+|||++++.+|+.+|.+++..|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 456999999999999999999999999998876
No 408
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.47 E-value=0.00023 Score=58.27 Aligned_cols=61 Identities=21% Similarity=0.396 Sum_probs=33.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCcc----------ChHHHHHH----HHh-cCCCeEEEEecCCcc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFK----------ENMELRNM----LIA-TKNKSILVVGDIDYL 100 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~----------~~~~~~~~----~~~-~~~~~il~iDeid~~ 100 (204)
++++|.||+|||++++.|+..+ +..+..++...+. .....+.. +.. .....++++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 7899999999999999999986 5666666533221 11222222 222 246689999999987
No 409
>PRK04328 hypothetical protein; Provisional
Probab=97.46 E-value=0.00067 Score=54.88 Aligned_cols=40 Identities=25% Similarity=0.195 Sum_probs=31.0
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT 72 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~ 72 (204)
|++.+..++++||||+|||+|+..++... |.+.++++...
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 57777779999999999999988766542 66777777654
No 410
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.46 E-value=5.6e-05 Score=55.02 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=24.2
Q ss_pred CCCceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 35 AWKHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 35 ~~~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
..+..+.++|++|+|||||+++|++....
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred cCCCEEEEEccCCCccccceeeecccccc
Confidence 33455899999999999999999997643
No 411
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.45 E-value=8.1e-05 Score=66.37 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=41.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe---------ecCCccChHHHHHHHHhc----CCCeEEEEecCCcc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL---------ELTTFKENMELRNMLIAT----KNKSILVVGDIDYL 100 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~----~~~~il~iDeid~~ 100 (204)
++||+|.||||||.+++.+++-.+..++.- .+......-.-.+.+++- +..++-+|||+|++
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKM 558 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKM 558 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhh
Confidence 499999999999999999999877666542 111111111112333332 46788899999999
No 412
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.45 E-value=0.00014 Score=57.41 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=27.0
Q ss_pred HHHhCCCCCc--eeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 29 YRNVGKAWKH--SYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 29 ~~~~~~~~~~--g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
+.++.+.... .+.+.||+|+|||||+++|++.+...
T Consensus 20 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~ 57 (218)
T cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT 57 (218)
T ss_pred EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC
Confidence 4444443333 48899999999999999999987543
No 413
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.45 E-value=0.0001 Score=56.32 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
++|.||+|+||||+++.|++..+.
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEECCCCCCHHHHHHHHHccCcc
Confidence 789999999999999999997643
No 414
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.44 E-value=0.00014 Score=56.74 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+.-+.|+||+|+|||++++.|++.++
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34488999999999999999999875
No 415
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.44 E-value=0.00011 Score=60.98 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=22.9
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.+++++||+|+||||+++++++.+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999999986
No 416
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.43 E-value=0.00032 Score=54.79 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=19.0
Q ss_pred eeEEECCCCCcHHHHHHHHH
Q 041769 39 SYFLYGPPGTGKSSLIAAMT 58 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la 58 (204)
.++|.||+|+||||+++.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999998
No 417
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.43 E-value=0.00061 Score=54.22 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=41.0
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc-----CCce------------EEeecC---Ccc--------ChHHHHHHHHhcCCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL-----NFDV------------YDLELT---TFK--------ENMELRNMLIATKNK 89 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~-----~~~~------------~~~~~~---~~~--------~~~~~~~~~~~~~~~ 89 (204)
.-+++.||+|+|||++++.++... |..+ +...+. ++. .-.++..++.....+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~ 111 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSR 111 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCCC
Confidence 348899999999999999999822 2111 001111 111 113456667777789
Q ss_pred eEEEEecCCcc
Q 041769 90 SILVVGDIDYL 100 (204)
Q Consensus 90 ~il~iDeid~~ 100 (204)
.++++||+.+-
T Consensus 112 sLvllDE~~~g 122 (222)
T cd03287 112 SLVILDELGRG 122 (222)
T ss_pred eEEEEccCCCC
Confidence 99999998654
No 418
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.43 E-value=0.00015 Score=56.50 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=26.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+.++|++|+|||++++.++..+|.+++..+
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 789999999999999999998888877644
No 419
>PRK05973 replicative DNA helicase; Provisional
Probab=97.43 E-value=0.00024 Score=57.00 Aligned_cols=39 Identities=18% Similarity=0.020 Sum_probs=29.5
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
|++.+.-+++.|+||+|||+++-.++... |.+++++++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 45555669999999999999888776655 7677666543
No 420
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=6.3e-05 Score=57.84 Aligned_cols=42 Identities=19% Similarity=0.443 Sum_probs=32.2
Q ss_pred HHHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 26 KEFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 26 ~~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
...|.++.+....| +.+.||+|+|||||+|.||+.+.+.--.
T Consensus 15 ~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~ 58 (209)
T COG4133 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGE 58 (209)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCe
Confidence 34566667655554 8899999999999999999988654433
No 421
>PLN02459 probable adenylate kinase
Probab=97.42 E-value=0.0002 Score=58.14 Aligned_cols=91 Identities=13% Similarity=0.208 Sum_probs=53.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCc------------------------cChHHHHHH----HHhc--CC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTF------------------------KENMELRNM----LIAT--KN 88 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~------------------------~~~~~~~~~----~~~~--~~ 88 (204)
.++|.||||+||||+++.|++.++...++. .++ .....+..+ +... ..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~--gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~ 108 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIAT--GDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEG 108 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeC--cHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccC
Confidence 488899999999999999999998765543 221 111111122 2211 12
Q ss_pred CeEEEEecCCccchh--hhhhccccceeEecCCCCHHHHHHHHHH
Q 041769 89 KSILVVGDIDYLTLH--ILLRSSCMDMHIHMSYCTPFRFKMLASN 131 (204)
Q Consensus 89 ~~il~iDeid~~~~~--a~~r~~R~~~~i~~~~p~~~~~~~i~~~ 131 (204)
..-++||.+-.-..- .+.....++..|.+..|+......+..+
T Consensus 109 ~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR 153 (261)
T PLN02459 109 ESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGR 153 (261)
T ss_pred CceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhcc
Confidence 345888888775111 2222224677778887776665555444
No 422
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.42 E-value=0.00025 Score=63.37 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=27.8
Q ss_pred HHHHhCCCCCc--eeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 28 FYRNVGKAWKH--SYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 28 ~~~~~~~~~~~--g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.++++.+..+. -+.++||+|+||||+++.+++.+...
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34444443334 48999999999999999999987543
No 423
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.42 E-value=0.00027 Score=62.66 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=27.2
Q ss_pred HHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 28 FYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 28 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.+++..+....| +-++|++|+||||++|+|++....
T Consensus 306 Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred eeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444444444 889999999999999999997643
No 424
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.41 E-value=0.00016 Score=56.04 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.1
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+.+.|+||+||||+++.|+..++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999983
No 425
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00045 Score=58.73 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=23.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.-+.|.||+|+|||||+++|++.....
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl~~p~ 59 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGLEKPT 59 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCCCC
Confidence 348899999999999999999976543
No 426
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.41 E-value=0.00067 Score=52.33 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=18.4
Q ss_pred eEEECCCCCcHHHHHHHHHH
Q 041769 40 YFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~ 59 (204)
++++||+|+|||++++.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 67999999999999999993
No 427
>PRK07667 uridine kinase; Provisional
Probab=97.40 E-value=0.00024 Score=55.23 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=27.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT 72 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~ 72 (204)
-|.+.|+||+||||+++.|+..+ |.++..++..+
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 37899999999999999999987 34655666555
No 428
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.40 E-value=0.00012 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.7
Q ss_pred CceeEEECCCCCcHHHHHHHHH
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMT 58 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la 58 (204)
+..+.|.||+|+|||||++++.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4558999999999999999987
No 429
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.40 E-value=0.00048 Score=50.39 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.5
Q ss_pred eEEECCCCCcHHHHHHHHHHh
Q 041769 40 YFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~ 60 (204)
+.+.|++|+|||+|++.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 679999999999999999886
No 430
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.40 E-value=0.00087 Score=57.96 Aligned_cols=62 Identities=21% Similarity=0.411 Sum_probs=43.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc-ChHHH---HHHHHhcC--CCeEEEEecCCcc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK-ENMEL---RNMLIATK--NKSILVVGDIDYL 100 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~--~~~il~iDeid~~ 100 (204)
-++++||-+|||||+++.+.+.+...++.++..+.. ....+ ...+.... ....+++||++.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNV 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCc
Confidence 689999999999999999999886665566655543 22222 22222222 3479999999998
No 431
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.39 E-value=0.00018 Score=54.84 Aligned_cols=22 Identities=41% Similarity=0.872 Sum_probs=20.0
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+++.|+||+||||+++.+...+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 432
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.00077 Score=59.89 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=43.9
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecCCcc----------------------ChHHHHHHHHhcCCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELTTFK----------------------ENMELRNMLIATKNK 89 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~ 89 (204)
+..+.|+||+|+||||++..|+..+ +..+..++..... ....+...+......
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 3448899999999999999998764 3455555543321 113444555555667
Q ss_pred eEEEEecCCcc
Q 041769 90 SILVVGDIDYL 100 (204)
Q Consensus 90 ~il~iDeid~~ 100 (204)
.+|+||.....
T Consensus 430 DLVLIDTaG~s 440 (559)
T PRK12727 430 KLVLIDTAGMG 440 (559)
T ss_pred CEEEecCCCcc
Confidence 89999998875
No 433
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.39 E-value=0.00029 Score=56.01 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=29.5
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeec
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLEL 70 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~ 70 (204)
|++.+..++++||||+|||+++..++... +.+++.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56666779999999999999998776432 566766665
No 434
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.39 E-value=9.1e-05 Score=59.33 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=29.3
Q ss_pred hHHHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 25 RKEFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 25 ~~~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.+..+....+....| +.|.||+|+|||||+++|++.+..
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p 73 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP 73 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 334555555544444 889999999999999999997643
No 435
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.38 E-value=0.00058 Score=58.12 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.-+.|.||+|+|||||+++||+.....
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~~p~ 57 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLERQT 57 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Confidence 348899999999999999999976543
No 436
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.38 E-value=0.00027 Score=53.72 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=28.1
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTF 73 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~ 73 (204)
+++.|+||+|||+++..++..+ +..+..++....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 6789999999999999998876 667777776644
No 437
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.37 E-value=0.00062 Score=56.77 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=29.3
Q ss_pred CCCCceeEEECCCCCcHHHHHHHHHHhc---------CCceEEeecCC
Q 041769 34 KAWKHSYFLYGPPGTGKSSLIAAMTNYL---------NFDVYDLELTT 72 (204)
Q Consensus 34 ~~~~~g~ll~Gp~GtGKT~la~~la~~~---------~~~~~~~~~~~ 72 (204)
++.+.-+.++||||+|||+++-.++... +..+++++..+
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 5555558899999999999999888663 23677777654
No 438
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.37 E-value=0.00028 Score=59.12 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=28.7
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeec
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLEL 70 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~ 70 (204)
|++.++-+.++||||+|||+|+..++... |..+++++.
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 56666679999999999999977766544 556666654
No 439
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.37 E-value=0.00015 Score=56.61 Aligned_cols=23 Identities=48% Similarity=0.917 Sum_probs=21.3
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
++++||+|+||||+++++++.+.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999998884
No 440
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.37 E-value=0.00014 Score=55.06 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=22.8
Q ss_pred ECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 43 YGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 43 ~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
.|+||+||||++++++..++..++..+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 499999999999999999987655543
No 441
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=0.00021 Score=56.09 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.-+.+.||+|+|||||+++|++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIILPD 53 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 348899999999999999999976543
No 442
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.36 E-value=0.00063 Score=53.82 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=30.3
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---C------CceEEeecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---N------FDVYDLELTT 72 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~------~~~~~~~~~~ 72 (204)
|++.+.-+.++||||+|||+++..++... + ..+++++..+
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 56656668999999999999999998764 2 4556666544
No 443
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.36 E-value=0.00021 Score=56.17 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..+.+.||+|+|||||++.|++.+..
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 334889999999999999999997644
No 444
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.36 E-value=7.8e-05 Score=59.27 Aligned_cols=48 Identities=19% Similarity=0.102 Sum_probs=33.8
Q ss_pred HHHHHHHHHhHHHHHHhCCCCCc--eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 16 MDDLERFVKRKEFYRNVGKAWKH--SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~--g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.+.+...+..+..+....+.... .+.|.||+|+|||||+++|++....
T Consensus 25 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 74 (224)
T cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred hhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444444445556665554444 4889999999999999999997643
No 445
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.36 E-value=0.00017 Score=52.00 Aligned_cols=64 Identities=22% Similarity=0.362 Sum_probs=39.5
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCc--------------------eEEeecCCccChHHHHHH--HHhcCCCeEEEE
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFD--------------------VYDLELTTFKENMELRNM--LIATKNKSILVV 94 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~--------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~il~i 94 (204)
+.-++|.|+=|+|||||+|++++.+|.. ++-+|+=.+....++... .......++.+|
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~I 94 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVI 94 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEE
Confidence 4459999999999999999999999643 111222222223333222 222346888999
Q ss_pred ecCCcc
Q 041769 95 GDIDYL 100 (204)
Q Consensus 95 Deid~~ 100 (204)
+..+.+
T Consensus 95 EW~e~~ 100 (123)
T PF02367_consen 95 EWPERL 100 (123)
T ss_dssp ESGGGG
T ss_pred ECcccc
Confidence 888776
No 446
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.0001 Score=60.32 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=29.1
Q ss_pred hHHHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 25 RKEFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 25 ~~~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
....+.++.+....| +.|.||+|+|||||+++|++.+..
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p 76 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 333455555544444 889999999999999999998754
No 447
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00019 Score=57.31 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=29.0
Q ss_pred HHHHhCCCCCc--eeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 28 FYRNVGKAWKH--SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 28 ~~~~~~~~~~~--g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
++....+.... .+.++|++||||||+++++++......-.+
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I 64 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI 64 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE
Confidence 34444443334 488999999999999999999775544333
No 448
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.00021 Score=57.12 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=23.7
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
+.-+.|.||+|+|||||+++|++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~p~ 53 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLLRPD 53 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3348899999999999999999987543
No 449
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.00019 Score=57.16 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=27.1
Q ss_pred HHHHhCCCCC--ceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 28 FYRNVGKAWK--HSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 28 ~~~~~~~~~~--~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.+..+.+... ..+.|.||+|+|||||+++|++.+..
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3444444333 44889999999999999999998754
No 450
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.35 E-value=0.00029 Score=55.89 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.9
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
++++|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999983
No 451
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.34 E-value=0.00023 Score=56.46 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=25.5
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
-+.+.||+|+||||+++.|++.++..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 37799999999999999999999876654
No 452
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.34 E-value=0.00075 Score=50.40 Aligned_cols=22 Identities=14% Similarity=0.472 Sum_probs=19.6
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+++.|++|+|||+|+..+....
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhc
Confidence 7899999999999999997654
No 453
>PRK12338 hypothetical protein; Provisional
Probab=97.34 E-value=0.00024 Score=59.36 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=26.0
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceE
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVY 66 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~ 66 (204)
+.-+++.|+||+||||+++.+|..+|...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 345889999999999999999999987654
No 454
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.34 E-value=0.00023 Score=56.10 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.-+.+.||+|+|||||+++|++.+...
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~ 56 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIEKPT 56 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 348899999999999999999987543
No 455
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.34 E-value=0.0003 Score=54.80 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=27.4
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
+.-+.|.|+||+||||+++.|++.+ |...+.++..
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d 61 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD 61 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence 4458899999999999999999987 3445566543
No 456
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.34 E-value=0.0015 Score=59.10 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=45.0
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCC--ceEEeecCC----ccChHHHHHHHHhc-----------CCCeEEEEecCCcc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNF--DVYDLELTT----FKENMELRNMLIAT-----------KNKSILVVGDIDYL 100 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~-----------~~~~il~iDeid~~ 100 (204)
.|+++.|+.|+|||+++++++..++. ++..+..+. +.+.-++...+..- ..++|||+||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 57999999999999999999999865 665544322 22333444433221 24689999999999
No 457
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00054 Score=58.35 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.5
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
-+.|.||+|+|||||+++||+.....
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~ 57 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERIT 57 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC
Confidence 37899999999999999999976543
No 458
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.33 E-value=0.00022 Score=55.65 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..+.+.||+|+|||||++.+++.+..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 334889999999999999999997754
No 459
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00013 Score=60.14 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=27.1
Q ss_pred HHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 28 FYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 28 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.+.++.+..+.| +-|.||+|+||||++|.||+....
T Consensus 17 a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p 54 (345)
T COG1118 17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP 54 (345)
T ss_pred ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC
Confidence 344444444444 889999999999999999996644
No 460
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.33 E-value=0.00023 Score=59.34 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=27.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
.-++++||+|||||+++..||+.++..+++.|
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~D 36 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISAD 36 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEecc
Confidence 34889999999999999999999987766554
No 461
>PRK08356 hypothetical protein; Provisional
Probab=97.33 E-value=0.00026 Score=55.09 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=22.3
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
++|+||||+||||+++.|.. .|...+.
T Consensus 8 i~~~G~~gsGK~t~a~~l~~-~g~~~is 34 (195)
T PRK08356 8 VGVVGKIAAGKTTVAKFFEE-KGFCRVS 34 (195)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcEEe
Confidence 78999999999999999964 6765433
No 462
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.32 E-value=0.00023 Score=55.91 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..+.+.||+|+|||||+++|++.+..
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344889999999999999999997744
No 463
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.32 E-value=0.00047 Score=58.56 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.9
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+++.|.||||||.+|-.++..+
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHh
Confidence 7889999999999999999988
No 464
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.32 E-value=0.00018 Score=57.37 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=30.6
Q ss_pred hHHHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 25 RKEFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 25 ~~~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.+..++++.+..++| +.+.||+|+|||+++|.+.+.+.+.
T Consensus 20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~ 61 (263)
T COG1127 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61 (263)
T ss_pred CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC
Confidence 344455566655555 7799999999999999999987543
No 465
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.31 E-value=0.00046 Score=55.22 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=27.2
Q ss_pred CCCCCceeEEECCCCCcHHHHHH-HHHHhc--CCceEEeec
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIA-AMTNYL--NFDVYDLEL 70 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~-~la~~~--~~~~~~~~~ 70 (204)
|++.+.-++++||||||||+++. .+++.+ |..+.+++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 46666669999999999999964 444433 556666664
No 466
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.31 E-value=0.00022 Score=56.06 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=26.4
Q ss_pred HHHhCCCCCc--eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 29 YRNVGKAWKH--SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 29 ~~~~~~~~~~--g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+.++.+.... -+.|.||+|+|||||+++|++.+..
T Consensus 18 l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (214)
T TIGR02673 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP 54 (214)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4444444334 4889999999999999999997643
No 467
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.31 E-value=0.00026 Score=54.68 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=23.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..+.+.||+|+|||||+++|++....
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344889999999999999999997643
No 468
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0012 Score=61.02 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=43.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc----C-CceEEeecCCcc----------------------ChHHHHHHHHhcCCCe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL----N-FDVYDLELTTFK----------------------ENMELRNMLIATKNKS 90 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~----~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~ 90 (204)
.-++|+||+|+||||++..||..+ | ..+..++....+ ...++.+.+.......
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 348899999999999999999766 3 345454443321 1234455555556667
Q ss_pred EEEEecCCcc
Q 041769 91 ILVVGDIDYL 100 (204)
Q Consensus 91 il~iDeid~~ 100 (204)
+|+||=....
T Consensus 266 ~VLIDTAGRs 275 (767)
T PRK14723 266 LVLIDTVGMS 275 (767)
T ss_pred EEEEeCCCCC
Confidence 9999998865
No 469
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.31 E-value=0.00021 Score=57.52 Aligned_cols=29 Identities=34% Similarity=0.768 Sum_probs=21.6
Q ss_pred EECCCCCcHHHHHHHHHHhc---CCceEEeec
Q 041769 42 LYGPPGTGKSSLIAAMTNYL---NFDVYDLEL 70 (204)
Q Consensus 42 l~Gp~GtGKT~la~~la~~~---~~~~~~~~~ 70 (204)
+.||+|+||||+++++.+.+ +.+++.+|+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEc
Confidence 47999999999999999988 455555554
No 470
>PRK14974 cell division protein FtsY; Provisional
Probab=97.31 E-value=0.00068 Score=57.23 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=27.0
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
+.-++|+||||+||||++..+|..+ |..+..++..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3458899999999999988888776 5556555544
No 471
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.00027 Score=55.81 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=23.5
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
+..+.+.||+|+|||||+++|++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~ 53 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLLKPT 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3348899999999999999999976543
No 472
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.001 Score=53.02 Aligned_cols=41 Identities=20% Similarity=0.412 Sum_probs=29.8
Q ss_pred HHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 28 FYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 28 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.+.+..+..+.| +.+.||+|+|||||+|+|.+......-.+
T Consensus 19 aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i 61 (258)
T COG3638 19 ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61 (258)
T ss_pred eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE
Confidence 344444444454 88999999999999999999776554443
No 473
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.00024 Score=56.12 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
..+.+.||+|+|||||+++|++....
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34889999999999999999997643
No 474
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.30 E-value=0.00023 Score=57.01 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=27.1
Q ss_pred HHHHhCCCCCc--eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 28 FYRNVGKAWKH--SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 28 ~~~~~~~~~~~--g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.+.+..+.... -+.+.||+|+|||||+++|++.+..
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP 54 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 34444444444 3889999999999999999997743
No 475
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.30 E-value=0.00028 Score=63.36 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=29.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeec
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL 70 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~ 70 (204)
++|.|.||+||||+.+.+|+.++++++.+|.
T Consensus 9 i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 9 AVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 8999999999999999999999999998774
No 476
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.29 E-value=0.00024 Score=55.54 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.-+.+.||+|+|||||+++|++....
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~p 52 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34889999999999999999997644
No 477
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.29 E-value=0.00026 Score=55.96 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+.-+.+.||+|+|||||+++|++.+..
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~~~ 57 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLDNP 57 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 334889999999999999999998754
No 478
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.29 E-value=0.00025 Score=55.61 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=26.4
Q ss_pred HHHhCCCCCc--eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 29 YRNVGKAWKH--SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 29 ~~~~~~~~~~--g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..+.+.... -+.|.||+|+|||||+++|++....
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4444444334 3889999999999999999997643
No 479
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.29 E-value=0.00028 Score=55.39 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=23.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..+.+.||+|+|||||++.|++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 334889999999999999999997643
No 480
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.28 E-value=0.0011 Score=50.86 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=24.0
Q ss_pred HHHhCCCCCc-eeEEECCCCCcHHHHHHHHHH
Q 041769 29 YRNVGKAWKH-SYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 29 ~~~~~~~~~~-g~ll~Gp~GtGKT~la~~la~ 59 (204)
+..+++.... -+++.|++|+|||+|++.+..
T Consensus 10 ~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 10 LSSLGLYNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHhhcccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4445544433 389999999999999999986
No 481
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.28 E-value=0.00024 Score=56.49 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..+.|.||+|+|||||+++|++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 334899999999999999999998754
No 482
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.28 E-value=0.00098 Score=55.59 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=27.2
Q ss_pred HHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 29 YRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 29 ~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
++++.+..+.| +.|.||+|+|||||++.|++.+...
T Consensus 23 l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~ 60 (306)
T PRK13537 23 VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD 60 (306)
T ss_pred EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34444444444 8899999999999999999987543
No 483
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.28 E-value=0.00088 Score=53.06 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.0
Q ss_pred eeEEECCCCCcHHHHHHHHHH
Q 041769 39 SYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~ 59 (204)
-+++.||+|+|||++++.++.
T Consensus 32 ~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 32 ILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 478999999999999999974
No 484
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.28 E-value=0.00049 Score=52.89 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=24.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
++-++|+||+|+|||++++.|....+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 45689999999999999999999886543
No 485
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.28 E-value=0.00086 Score=57.25 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=22.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
-+.|.||+|+|||||+++||+.....
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~ 58 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAA 58 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 38899999999999999999966443
No 486
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.00027 Score=55.55 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=26.4
Q ss_pred HHHhCCCCCc--eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 29 YRNVGKAWKH--SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 29 ~~~~~~~~~~--g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+.+..+.... -+.+.||+|+|||||+++|++.+..
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4444444333 4889999999999999999997644
No 487
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.00029 Score=56.43 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..+.+.||+|+|||||+++|++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344889999999999999999997744
No 488
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.28 E-value=0.00025 Score=56.04 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..+.+.||+|+|||||+++|++....
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 334889999999999999999997754
No 489
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.27 E-value=0.00025 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+++.|++|+|||+|++.++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999998553
No 490
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.00028 Score=56.60 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..+.+.||+|+|||||+++|++....
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLLEMP 54 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344899999999999999999997643
No 491
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.27 E-value=9.7e-05 Score=62.29 Aligned_cols=64 Identities=22% Similarity=0.347 Sum_probs=37.9
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEeec----CCcc-----ChHHHHHHH----HhcCCCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL----TTFK-----ENMELRNML----IATKNKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~----~~~~-----~~~~~~~~~----~~~~~~~il~iDeid~~ 100 (204)
..++||+|.||+|||.|++.+++..+..++..-. .++. ....-.+.+ -....++|.+|||+|.+
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~ 133 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKM 133 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT-
T ss_pred ccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccc
Confidence 3469999999999999999998877666543211 1111 100000111 11246799999999999
No 492
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.27 E-value=0.00024 Score=59.57 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.7
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.++++.|++|+||||++++|+...
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999999876
No 493
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.27 E-value=0.00033 Score=57.78 Aligned_cols=31 Identities=29% Similarity=0.578 Sum_probs=27.6
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeec
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL 70 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~ 70 (204)
++++||+|+|||+++..|++.++..++++|.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 6799999999999999999999888777653
No 494
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.27 E-value=0.00077 Score=57.83 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
-+.|.||+|+|||||+++||+....
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p 66 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETP 66 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3889999999999999999997654
No 495
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.27 E-value=0.00042 Score=53.33 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=25.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~ 69 (204)
+.|.|++|+||||+++.|++.+ |..+..+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 6788999999999999999998 55665543
No 496
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.27 E-value=0.00025 Score=56.23 Aligned_cols=36 Identities=31% Similarity=0.354 Sum_probs=27.2
Q ss_pred HHHHhCCCCCc--eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 28 FYRNVGKAWKH--SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 28 ~~~~~~~~~~~--g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.+....+..+. -+.+.||+|+|||||++.|++.+..
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 57 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444444444 4899999999999999999997744
No 497
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.27 E-value=0.00028 Score=55.67 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=27.2
Q ss_pred HHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 28 FYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 28 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.+..+.+....| +.+.||+|+|||||+++|++....
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP 54 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 344444444444 889999999999999999997754
No 498
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.26 E-value=0.00053 Score=63.23 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=29.4
Q ss_pred HHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 28 FYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 28 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.++++.+..+.| +.++|++|+|||||+|.+.+.+.+.
T Consensus 488 vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred hhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 455555555566 9999999999999999999976543
No 499
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.26 E-value=0.00035 Score=54.38 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=26.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
-+.++|++|+||||+++.++. +|.+++..|
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 388999999999999999998 887776655
No 500
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.26 E-value=0.00013 Score=55.92 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=22.5
Q ss_pred HHhCCCCCc--eeEEECCCCCcHHHHHHHHHH
Q 041769 30 RNVGKAWKH--SYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 30 ~~~~~~~~~--g~ll~Gp~GtGKT~la~~la~ 59 (204)
+++.+..+. -+.+.||+|+|||||++++..
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 333443334 388999999999999999864
Done!