Query 041769
Match_columns 204
No_of_seqs 140 out of 2041
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 17:53:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 4.2E-31 1.4E-35 223.9 18.4 163 1-163 146-363 (405)
2 4b4t_L 26S protease subunit RP 100.0 5.4E-30 1.8E-34 219.9 18.4 163 1-163 179-396 (437)
3 4b4t_I 26S protease regulatory 100.0 4.8E-30 1.6E-34 218.3 16.6 163 1-163 180-397 (437)
4 4b4t_H 26S protease regulatory 100.0 3.7E-29 1.3E-33 214.6 19.7 161 1-163 207-424 (467)
5 4b4t_M 26S protease regulatory 100.0 1E-29 3.5E-34 217.9 15.9 161 1-163 179-396 (434)
6 4b4t_K 26S protease regulatory 100.0 6.4E-29 2.2E-33 212.8 18.6 163 1-163 170-388 (428)
7 3cf2_A TER ATPase, transitiona 99.9 1.5E-25 5.3E-30 204.2 15.1 175 1-180 202-428 (806)
8 3cf2_A TER ATPase, transitiona 99.9 5.3E-26 1.8E-30 207.3 4.5 174 1-179 475-703 (806)
9 2x8a_A Nuclear valosin-contain 99.9 5.1E-23 1.7E-27 167.4 20.0 163 1-163 8-227 (274)
10 3cf0_A Transitional endoplasmi 99.9 1E-21 3.4E-26 161.6 19.6 161 1-163 13-230 (301)
11 3h4m_A Proteasome-activating n 99.9 9E-21 3.1E-25 154.0 18.2 162 1-162 15-231 (285)
12 1xwi_A SKD1 protein; VPS4B, AA 99.9 2.7E-20 9.2E-25 154.6 20.3 160 1-163 10-224 (322)
13 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2.6E-20 9E-25 149.2 17.4 162 1-163 4-223 (262)
14 2ce7_A Cell division protein F 99.9 1.7E-20 5.9E-25 162.8 17.5 162 1-163 14-230 (476)
15 3eie_A Vacuolar protein sortin 99.8 4E-20 1.4E-24 153.4 16.0 160 1-163 16-229 (322)
16 3hu3_A Transitional endoplasmi 99.8 3.4E-20 1.2E-24 161.8 15.8 163 1-163 202-416 (489)
17 1lv7_A FTSH; alpha/beta domain 99.8 5.9E-20 2E-24 147.4 13.9 161 1-162 10-225 (257)
18 2qp9_X Vacuolar protein sortin 99.8 1.6E-19 5.3E-24 151.9 16.8 159 1-162 49-261 (355)
19 1ixz_A ATP-dependent metallopr 99.8 4.5E-19 1.5E-23 142.0 15.4 162 1-163 14-230 (254)
20 2zan_A Vacuolar protein sortin 99.8 7.6E-19 2.6E-23 151.8 17.3 160 1-163 132-346 (444)
21 2dhr_A FTSH; AAA+ protein, hex 99.8 3E-19 1E-23 155.9 14.8 162 1-163 29-245 (499)
22 2r62_A Cell division protease 99.8 3.2E-20 1.1E-24 149.6 7.3 161 1-162 9-226 (268)
23 1iy2_A ATP-dependent metallopr 99.8 2.6E-18 9E-23 139.4 15.3 162 1-163 38-254 (278)
24 3vfd_A Spastin; ATPase, microt 99.8 7.2E-18 2.5E-22 143.1 16.4 160 1-163 113-327 (389)
25 3b9p_A CG5977-PA, isoform A; A 99.8 9.4E-18 3.2E-22 137.0 15.8 160 1-163 19-234 (297)
26 3d8b_A Fidgetin-like protein 1 99.8 1.1E-17 3.8E-22 140.5 14.7 160 1-163 82-296 (357)
27 1ypw_A Transitional endoplasmi 99.7 2.2E-17 7.5E-22 151.8 12.1 162 1-162 202-415 (806)
28 1ypw_A Transitional endoplasmi 99.7 8.9E-20 3E-24 167.7 -5.2 163 1-163 475-692 (806)
29 3t15_A Ribulose bisphosphate c 99.7 8.7E-17 3E-21 131.7 12.9 145 1-149 1-213 (293)
30 3pfi_A Holliday junction ATP-d 99.6 4.4E-15 1.5E-19 123.2 16.2 124 1-134 27-198 (338)
31 3syl_A Protein CBBX; photosynt 99.6 1.1E-14 3.9E-19 119.1 13.4 128 4-135 32-219 (309)
32 1hqc_A RUVB; extended AAA-ATPa 99.6 3.1E-14 1.1E-18 117.2 15.3 154 1-162 10-211 (324)
33 3u61_B DNA polymerase accessor 99.6 3.1E-14 1.1E-18 117.5 14.3 154 1-178 24-219 (324)
34 2c9o_A RUVB-like 1; hexameric 99.6 6.9E-15 2.4E-19 127.3 9.0 91 2-100 36-138 (456)
35 1sxj_A Activator 1 95 kDa subu 99.5 3.8E-14 1.3E-18 124.4 11.9 132 1-132 37-221 (516)
36 1ofh_A ATP-dependent HSL prote 99.5 2.8E-13 9.6E-18 110.4 14.1 98 3-100 15-128 (310)
37 3hws_A ATP-dependent CLP prote 99.5 4.7E-14 1.6E-18 118.5 5.8 97 4-100 16-128 (363)
38 3uk6_A RUVB-like 2; hexameric 99.5 1E-12 3.4E-17 110.0 13.8 61 2-70 43-105 (368)
39 3pvs_A Replication-associated 99.4 3E-12 1E-16 110.5 15.4 121 1-135 24-180 (447)
40 1d2n_A N-ethylmaleimide-sensit 99.4 7.3E-12 2.5E-16 100.9 16.6 94 4-100 34-136 (272)
41 1in4_A RUVB, holliday junction 99.4 7.8E-12 2.7E-16 103.9 16.3 92 1-100 23-114 (334)
42 1jbk_A CLPB protein; beta barr 99.4 8.7E-13 3E-17 99.4 9.3 87 1-100 20-127 (195)
43 2chg_A Replication factor C sm 99.4 8.7E-12 3E-16 96.0 15.1 117 1-133 15-174 (226)
44 4fcw_A Chaperone protein CLPB; 99.4 4.3E-12 1.5E-16 103.7 13.9 92 3-100 17-131 (311)
45 2bjv_A PSP operon transcriptio 99.4 1E-11 3.5E-16 99.6 14.7 91 1-102 4-114 (265)
46 1r6b_X CLPA protein; AAA+, N-t 99.4 7.2E-12 2.5E-16 114.5 15.1 121 4-133 459-666 (758)
47 3pxi_A Negative regulator of g 99.4 6.8E-12 2.3E-16 114.7 14.6 161 3-181 491-719 (758)
48 3bos_A Putative DNA replicatio 99.4 3.4E-12 1.2E-16 100.0 10.1 62 37-100 52-116 (242)
49 3te6_A Regulatory protein SIR3 99.3 1.3E-11 4.3E-16 102.0 13.4 99 35-133 43-211 (318)
50 3m6a_A ATP-dependent protease 99.3 6.5E-12 2.2E-16 110.9 12.2 119 4-133 82-266 (543)
51 1um8_A ATP-dependent CLP prote 99.3 1.5E-11 5.2E-16 103.5 12.8 98 3-100 21-149 (376)
52 1njg_A DNA polymerase III subu 99.3 1.3E-10 4.5E-15 90.3 17.1 118 1-133 21-198 (250)
53 1g41_A Heat shock protein HSLU 99.3 2.9E-12 1E-16 110.1 8.2 121 3-123 15-181 (444)
54 2r44_A Uncharacterized protein 99.3 8.2E-12 2.8E-16 103.3 10.7 117 2-135 26-200 (331)
55 3n70_A Transport activator; si 99.3 2E-12 6.7E-17 94.9 5.7 85 4-101 2-89 (145)
56 2chq_A Replication factor C sm 99.3 1.7E-11 5.9E-16 100.1 11.6 118 1-134 15-175 (319)
57 1iqp_A RFCS; clamp loader, ext 99.3 7.4E-11 2.5E-15 96.6 14.2 117 1-133 23-182 (327)
58 1l8q_A Chromosomal replication 99.3 1.2E-11 4.2E-16 102.0 9.4 64 37-100 37-110 (324)
59 2z4s_A Chromosomal replication 99.3 4E-11 1.4E-15 103.3 12.3 64 37-100 130-206 (440)
60 1r6b_X CLPA protein; AAA+, N-t 99.3 9.5E-11 3.2E-15 107.1 14.7 117 1-133 184-362 (758)
61 1sxj_D Activator 1 41 kDa subu 99.2 2.4E-11 8.3E-16 100.7 9.5 87 1-100 35-145 (353)
62 2p65_A Hypothetical protein PF 99.2 1.1E-11 3.6E-16 93.2 6.6 87 1-100 20-127 (187)
63 1qvr_A CLPB protein; coiled co 99.2 4.5E-11 1.5E-15 110.7 12.0 116 1-132 168-344 (854)
64 1jr3_A DNA polymerase III subu 99.2 2.2E-10 7.7E-15 95.6 15.0 118 1-133 14-191 (373)
65 3ec2_A DNA replication protein 99.2 6.2E-12 2.1E-16 95.2 4.9 94 1-100 8-112 (180)
66 3pxg_A Negative regulator of g 99.2 1.2E-10 4E-15 101.1 13.5 119 1-135 178-340 (468)
67 1sxj_B Activator 1 37 kDa subu 99.2 2.6E-10 9E-15 93.1 14.8 117 1-132 19-178 (323)
68 3co5_A Putative two-component 99.2 3E-12 1E-16 93.8 2.5 85 4-102 5-89 (143)
69 1ojl_A Transcriptional regulat 99.2 2.9E-10 1E-14 93.3 14.1 89 3-102 2-110 (304)
70 2qby_B CDC6 homolog 3, cell di 99.2 8.8E-11 3E-15 98.4 11.1 122 3-133 20-210 (384)
71 1qvr_A CLPB protein; coiled co 99.2 1.2E-10 4.1E-15 107.8 11.4 89 3-100 558-672 (854)
72 1fnn_A CDC6P, cell division co 99.2 1.7E-09 5.7E-14 90.6 16.8 92 2-100 16-137 (389)
73 3pxi_A Negative regulator of g 99.2 3.8E-10 1.3E-14 103.1 13.7 119 1-135 178-340 (758)
74 2w58_A DNAI, primosome compone 99.1 3.7E-11 1.2E-15 92.4 4.6 94 1-100 23-127 (202)
75 1sxj_C Activator 1 40 kDa subu 99.1 1.1E-09 3.8E-14 90.9 13.5 88 1-101 23-123 (340)
76 1g8p_A Magnesium-chelatase 38 99.1 1.9E-10 6.4E-15 95.3 7.3 50 1-63 22-71 (350)
77 2v1u_A Cell division control p 99.1 1.5E-10 5.2E-15 96.7 6.0 89 3-100 19-142 (387)
78 1sxj_E Activator 1 40 kDa subu 99.1 9.5E-10 3.2E-14 91.3 10.8 49 1-61 12-60 (354)
79 2qby_A CDC6 homolog 1, cell di 99.0 4.3E-10 1.5E-14 93.8 7.6 121 2-133 19-210 (386)
80 2qgz_A Helicase loader, putati 99.0 4.2E-10 1.4E-14 92.6 6.4 94 1-100 122-226 (308)
81 1a5t_A Delta prime, HOLB; zinc 99.0 1.8E-08 6.1E-13 83.5 14.9 95 37-132 24-179 (334)
82 3nbx_X ATPase RAVA; AAA+ ATPas 98.9 5E-09 1.7E-13 91.5 10.6 94 37-133 41-196 (500)
83 2gno_A DNA polymerase III, gam 98.9 8.4E-09 2.9E-13 84.7 9.8 65 37-101 18-95 (305)
84 2kjq_A DNAA-related protein; s 98.9 3.5E-09 1.2E-13 78.0 6.0 57 37-100 36-95 (149)
85 1tue_A Replication protein E1; 98.8 7.5E-09 2.5E-13 80.0 6.3 62 33-100 54-115 (212)
86 4akg_A Glutathione S-transfera 98.8 6.6E-08 2.3E-12 97.7 14.1 64 37-100 1267-1348(2695)
87 3dzd_A Transcriptional regulat 98.6 1.5E-06 5E-11 73.1 15.7 65 38-102 153-236 (368)
88 1ny5_A Transcriptional regulat 98.6 1.2E-06 4.2E-11 74.0 15.0 65 38-102 161-245 (387)
89 1w5s_A Origin recognition comp 98.6 8.3E-08 2.8E-12 80.9 7.4 90 3-100 22-150 (412)
90 4akg_A Glutathione S-transfera 98.5 3.4E-07 1.2E-11 92.7 10.0 64 37-100 645-709 (2695)
91 3cmw_A Protein RECA, recombina 98.5 1.9E-07 6.4E-12 91.1 7.4 100 1-100 1018-1172(1706)
92 3f9v_A Minichromosome maintena 98.5 2.2E-08 7.6E-13 89.2 0.7 61 39-100 329-403 (595)
93 2vhj_A Ntpase P4, P4; non- hyd 98.4 1.1E-07 3.7E-12 78.4 3.5 68 33-100 119-194 (331)
94 2fna_A Conserved hypothetical 98.3 1.3E-06 4.3E-11 71.8 8.3 34 39-72 32-65 (357)
95 1u0j_A DNA replication protein 98.3 1E-06 3.5E-11 70.7 6.7 29 35-63 102-130 (267)
96 1svm_A Large T antigen; AAA+ f 98.3 1.1E-06 3.7E-11 74.1 6.9 65 32-100 164-228 (377)
97 3vaa_A Shikimate kinase, SK; s 98.2 9.8E-07 3.3E-11 67.5 3.9 33 37-69 25-57 (199)
98 2qen_A Walker-type ATPase; unk 98.2 5.1E-06 1.8E-10 68.0 8.5 51 3-70 12-62 (350)
99 1qhx_A CPT, protein (chloramph 98.2 1.7E-06 6E-11 64.5 5.0 33 38-70 4-36 (178)
100 1ye8_A Protein THEP1, hypothet 98.2 2.6E-06 8.8E-11 64.4 6.0 25 40-64 3-27 (178)
101 3kb2_A SPBC2 prophage-derived 98.2 2.2E-06 7.6E-11 63.3 5.2 30 40-69 4-33 (173)
102 3trf_A Shikimate kinase, SK; a 98.2 1.3E-06 4.5E-11 65.6 3.9 33 37-69 5-37 (185)
103 2rhm_A Putative kinase; P-loop 98.1 1.5E-06 5.3E-11 65.5 3.9 34 36-69 4-37 (193)
104 3vkg_A Dynein heavy chain, cyt 98.1 6.7E-06 2.3E-10 84.2 8.8 64 37-100 604-668 (3245)
105 3cmu_A Protein RECA, recombina 98.1 5.9E-06 2E-10 81.8 7.4 67 34-100 1424-1517(2050)
106 1zp6_A Hypothetical protein AT 98.1 2.5E-06 8.7E-11 64.3 3.8 37 34-70 6-42 (191)
107 1kag_A SKI, shikimate kinase I 98.1 2.3E-06 8E-11 63.5 3.5 30 38-67 5-34 (173)
108 3vkg_A Dynein heavy chain, cyt 98.0 2E-05 6.9E-10 80.8 11.1 64 37-100 1304-1386(3245)
109 1via_A Shikimate kinase; struc 98.0 2.5E-06 8.5E-11 63.7 3.4 31 39-69 6-36 (175)
110 2r2a_A Uncharacterized protein 98.0 4E-06 1.4E-10 64.5 4.4 63 38-100 6-99 (199)
111 3iij_A Coilin-interacting nucl 98.0 3.5E-06 1.2E-10 63.1 3.9 32 38-69 12-43 (180)
112 2iyv_A Shikimate kinase, SK; t 98.0 3E-06 1E-10 63.6 3.5 30 40-69 5-34 (184)
113 1y63_A LMAJ004144AAA protein; 98.0 3.7E-06 1.3E-10 63.4 3.9 33 37-69 10-43 (184)
114 2ze6_A Isopentenyl transferase 98.0 4E-06 1.4E-10 66.7 4.1 31 40-70 4-34 (253)
115 1gvn_B Zeta; postsegregational 98.0 1.1E-05 3.8E-10 65.4 6.7 35 37-71 33-67 (287)
116 3lw7_A Adenylate kinase relate 98.0 4E-06 1.4E-10 61.8 3.3 28 40-68 4-31 (179)
117 1zuh_A Shikimate kinase; alpha 98.0 4.3E-06 1.5E-10 61.9 3.5 31 39-69 9-39 (168)
118 3t61_A Gluconokinase; PSI-biol 98.0 5.2E-06 1.8E-10 63.4 3.8 32 38-69 19-50 (202)
119 1e6c_A Shikimate kinase; phosp 97.9 4.7E-06 1.6E-10 61.7 3.4 31 39-69 4-34 (173)
120 2cdn_A Adenylate kinase; phosp 97.9 6.6E-06 2.3E-10 62.7 4.1 30 39-68 22-51 (201)
121 1knq_A Gluconate kinase; ALFA/ 97.9 7.6E-06 2.6E-10 60.9 4.2 31 38-68 9-39 (175)
122 1htw_A HI0065; nucleotide-bind 97.9 1.4E-05 4.8E-10 59.1 5.4 34 28-61 22-57 (158)
123 3dl0_A Adenylate kinase; phosp 97.9 6.3E-06 2.2E-10 63.5 3.6 29 40-68 3-31 (216)
124 1tev_A UMP-CMP kinase; ploop, 97.9 6.6E-06 2.2E-10 61.9 3.6 31 38-68 4-34 (196)
125 3cm0_A Adenylate kinase; ATP-b 97.9 5.1E-06 1.8E-10 62.3 2.9 30 39-68 6-35 (186)
126 2pt5_A Shikimate kinase, SK; a 97.9 7.1E-06 2.4E-10 60.5 3.5 30 40-69 3-32 (168)
127 2c95_A Adenylate kinase 1; tra 97.9 7.7E-06 2.6E-10 61.7 3.7 32 37-68 9-40 (196)
128 3k1j_A LON protease, ATP-depen 97.9 1.2E-05 4E-10 71.7 5.5 27 38-64 61-87 (604)
129 3fb4_A Adenylate kinase; psych 97.9 6.9E-06 2.4E-10 63.2 3.5 29 40-68 3-31 (216)
130 4eun_A Thermoresistant glucoki 97.9 1.1E-05 3.8E-10 61.5 4.6 31 37-67 29-59 (200)
131 2r8r_A Sensor protein; KDPD, P 97.9 8.8E-05 3E-09 58.0 9.5 124 39-164 8-175 (228)
132 2p5t_B PEZT; postsegregational 97.9 8.9E-06 3E-10 64.5 3.9 37 37-73 32-68 (253)
133 1ly1_A Polynucleotide kinase; 97.9 5.6E-06 1.9E-10 61.6 2.5 30 38-67 3-33 (181)
134 3be4_A Adenylate kinase; malar 97.9 7.9E-06 2.7E-10 63.2 3.4 31 38-68 6-36 (217)
135 2cvh_A DNA repair and recombin 97.9 3.9E-05 1.3E-09 58.8 7.3 40 33-72 16-55 (220)
136 2zr9_A Protein RECA, recombina 97.8 4.2E-05 1.4E-09 63.7 7.9 68 33-100 57-151 (349)
137 2bwj_A Adenylate kinase 5; pho 97.8 8.9E-06 3.1E-10 61.5 3.5 31 38-68 13-43 (199)
138 3nwj_A ATSK2; P loop, shikimat 97.8 5.6E-06 1.9E-10 65.9 2.4 32 38-69 49-80 (250)
139 1qf9_A UMP/CMP kinase, protein 97.8 1.1E-05 3.6E-10 60.6 3.8 31 38-68 7-37 (194)
140 1aky_A Adenylate kinase; ATP:A 97.8 1.1E-05 3.6E-10 62.5 3.9 31 38-68 5-35 (220)
141 1zd8_A GTP:AMP phosphotransfer 97.8 9.1E-06 3.1E-10 63.2 3.5 32 37-68 7-38 (227)
142 2orw_A Thymidine kinase; TMTK, 97.8 8.5E-06 2.9E-10 61.8 3.2 62 39-100 5-88 (184)
143 1kht_A Adenylate kinase; phosp 97.8 9.8E-06 3.4E-10 60.8 3.4 29 39-67 5-38 (192)
144 2vli_A Antibiotic resistance p 97.8 1E-05 3.5E-10 60.4 3.3 29 38-66 6-34 (183)
145 1u94_A RECA protein, recombina 97.8 5.3E-05 1.8E-09 63.3 7.9 67 34-100 60-153 (356)
146 1ukz_A Uridylate kinase; trans 97.8 1.4E-05 4.9E-10 60.8 4.0 31 39-69 17-47 (203)
147 3uie_A Adenylyl-sulfate kinase 97.8 2.5E-05 8.6E-10 59.5 5.3 35 37-71 25-62 (200)
148 3hr8_A Protein RECA; alpha and 97.8 7.1E-05 2.4E-09 62.5 8.4 39 34-72 58-99 (356)
149 3umf_A Adenylate kinase; rossm 97.8 1.7E-05 5.9E-10 61.7 4.4 34 34-67 26-59 (217)
150 2pez_A Bifunctional 3'-phospho 97.8 2.5E-05 8.5E-10 58.3 4.9 33 38-70 6-41 (179)
151 2pbr_A DTMP kinase, thymidylat 97.8 2.2E-05 7.5E-10 59.0 4.6 31 40-70 3-36 (195)
152 4a74_A DNA repair and recombin 97.8 4.6E-05 1.6E-09 58.7 6.6 29 33-61 21-49 (231)
153 1ak2_A Adenylate kinase isoenz 97.8 1.6E-05 5.6E-10 62.1 4.0 31 38-68 17-47 (233)
154 1cke_A CK, MSSA, protein (cyti 97.8 1.8E-05 6E-10 61.2 4.1 29 39-67 7-35 (227)
155 1zak_A Adenylate kinase; ATP:A 97.8 1E-05 3.6E-10 62.6 2.7 30 38-67 6-35 (222)
156 2if2_A Dephospho-COA kinase; a 97.8 1.3E-05 4.3E-10 61.1 3.1 29 40-69 4-32 (204)
157 3sr0_A Adenylate kinase; phosp 97.8 1.9E-05 6.7E-10 60.9 4.1 90 40-131 3-124 (206)
158 3tlx_A Adenylate kinase 2; str 97.8 1.7E-05 5.8E-10 62.6 3.9 32 37-68 29-60 (243)
159 1e4v_A Adenylate kinase; trans 97.8 1.4E-05 4.7E-10 61.6 3.2 29 40-68 3-31 (214)
160 1n0w_A DNA repair protein RAD5 97.7 5.8E-05 2E-09 58.7 6.7 40 33-72 20-68 (243)
161 3crm_A TRNA delta(2)-isopenten 97.7 2.3E-05 8E-10 64.5 4.4 32 38-69 6-37 (323)
162 1jjv_A Dephospho-COA kinase; P 97.7 1.7E-05 5.8E-10 60.6 3.3 29 39-68 4-32 (206)
163 2jaq_A Deoxyguanosine kinase; 97.7 2.2E-05 7.7E-10 59.4 3.9 28 40-67 3-30 (205)
164 1z6g_A Guanylate kinase; struc 97.7 1.8E-05 6.3E-10 61.4 3.4 35 27-61 11-47 (218)
165 1xp8_A RECA protein, recombina 97.7 0.00011 3.7E-09 61.7 8.2 68 33-100 70-164 (366)
166 2xb4_A Adenylate kinase; ATP-b 97.7 2.7E-05 9.1E-10 60.5 4.1 29 40-68 3-31 (223)
167 2z0h_A DTMP kinase, thymidylat 97.7 3.7E-05 1.3E-09 58.0 4.6 31 40-70 3-36 (197)
168 2w0m_A SSO2452; RECA, SSPF, un 97.7 4.7E-05 1.6E-09 58.6 5.0 39 33-71 19-60 (235)
169 2bbw_A Adenylate kinase 4, AK4 97.7 3.5E-05 1.2E-09 60.7 4.3 30 37-66 27-56 (246)
170 1nks_A Adenylate kinase; therm 97.6 1.8E-05 6.1E-10 59.4 2.4 30 40-69 4-36 (194)
171 3b9q_A Chloroplast SRP recepto 97.6 2.9E-05 1E-09 63.4 3.8 24 38-61 101-124 (302)
172 2grj_A Dephospho-COA kinase; T 97.6 2.7E-05 9.3E-10 59.4 3.4 30 40-69 15-44 (192)
173 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 4.2E-05 1.4E-09 60.9 4.6 33 38-70 5-40 (260)
174 1kgd_A CASK, peripheral plasma 97.6 3.7E-05 1.3E-09 57.7 4.1 25 38-62 6-30 (180)
175 2jeo_A Uridine-cytidine kinase 97.6 2.8E-05 9.5E-10 61.3 3.4 37 28-64 14-52 (245)
176 2bdt_A BH3686; alpha-beta prot 97.6 4.1E-05 1.4E-09 57.6 4.2 24 40-63 5-28 (189)
177 3ake_A Cytidylate kinase; CMP 97.6 3E-05 1E-09 58.9 3.5 31 39-69 4-34 (208)
178 2v54_A DTMP kinase, thymidylat 97.6 4.4E-05 1.5E-09 57.9 4.3 33 38-70 5-38 (204)
179 3tr0_A Guanylate kinase, GMP k 97.6 4.3E-05 1.5E-09 58.0 4.0 25 38-62 8-32 (205)
180 2j41_A Guanylate kinase; GMP, 97.6 3.7E-05 1.3E-09 58.4 3.6 25 37-61 6-30 (207)
181 3tau_A Guanylate kinase, GMP k 97.6 5E-05 1.7E-09 58.3 4.4 26 38-63 9-34 (208)
182 4e22_A Cytidylate kinase; P-lo 97.6 6.1E-05 2.1E-09 59.7 4.9 30 38-67 28-57 (252)
183 3r20_A Cytidylate kinase; stru 97.6 5.4E-05 1.8E-09 59.6 4.5 30 38-67 10-39 (233)
184 2qor_A Guanylate kinase; phosp 97.6 5E-05 1.7E-09 58.0 4.0 26 37-62 12-37 (204)
185 2plr_A DTMP kinase, probable t 97.6 4E-05 1.4E-09 58.4 3.4 26 39-64 6-31 (213)
186 2b8t_A Thymidine kinase; deoxy 97.6 0.0002 6.9E-09 55.9 7.5 62 40-101 15-102 (223)
187 3asz_A Uridine kinase; cytidin 97.6 5.4E-05 1.8E-09 57.9 4.2 31 38-68 7-37 (211)
188 1uf9_A TT1252 protein; P-loop, 97.6 4.5E-05 1.5E-09 57.7 3.6 31 38-69 9-39 (203)
189 2qt1_A Nicotinamide riboside k 97.6 4E-05 1.4E-09 58.6 3.3 29 39-67 23-52 (207)
190 2z43_A DNA repair and recombin 97.6 0.00013 4.5E-09 59.9 6.6 40 33-72 103-151 (324)
191 3a00_A Guanylate kinase, GMP k 97.6 4.7E-05 1.6E-09 57.4 3.6 24 39-62 3-26 (186)
192 2ehv_A Hypothetical protein PH 97.6 3.8E-05 1.3E-09 60.0 3.1 38 33-70 26-67 (251)
193 3c8u_A Fructokinase; YP_612366 97.5 6.1E-05 2.1E-09 57.8 4.2 34 37-70 22-58 (208)
194 2ga8_A Hypothetical 39.9 kDa p 97.5 2.1E-05 7.3E-10 65.5 1.7 29 39-67 26-54 (359)
195 1lvg_A Guanylate kinase, GMP k 97.5 4.3E-05 1.5E-09 58.3 3.2 25 38-62 5-29 (198)
196 3cmu_A Protein RECA, recombina 97.5 0.00013 4.6E-09 72.4 7.3 68 33-100 1077-1171(2050)
197 1znw_A Guanylate kinase, GMP k 97.5 5.7E-05 2E-09 57.9 3.8 28 35-62 18-45 (207)
198 3zvl_A Bifunctional polynucleo 97.5 0.0001 3.6E-09 62.7 5.8 59 38-98 259-318 (416)
199 2og2_A Putative signal recogni 97.5 6.3E-05 2.2E-09 62.9 4.3 24 38-61 158-181 (359)
200 3a8t_A Adenylate isopentenyltr 97.5 5.4E-05 1.9E-09 62.7 3.8 31 39-69 42-72 (339)
201 1uj2_A Uridine-cytidine kinase 97.5 7.7E-05 2.6E-09 58.9 4.6 27 38-64 23-49 (252)
202 2v9p_A Replication protein E1; 97.5 6.7E-05 2.3E-09 61.3 4.3 36 27-62 114-151 (305)
203 2wwf_A Thymidilate kinase, put 97.5 3.2E-05 1.1E-09 59.1 2.0 26 38-63 11-36 (212)
204 1ex7_A Guanylate kinase; subst 97.5 8.6E-05 3E-09 56.4 4.4 25 39-63 3-27 (186)
205 1v5w_A DMC1, meiotic recombina 97.5 0.00025 8.7E-09 58.7 7.6 40 33-72 118-166 (343)
206 1z6t_A APAF-1, apoptotic prote 97.5 0.00077 2.6E-08 59.4 11.1 22 38-59 148-169 (591)
207 3rlf_A Maltose/maltodextrin im 97.5 9.6E-05 3.3E-09 62.2 5.0 27 39-65 31-57 (381)
208 1vht_A Dephospho-COA kinase; s 97.5 5.8E-05 2E-09 58.1 3.4 30 38-68 5-34 (218)
209 2yvu_A Probable adenylyl-sulfa 97.5 0.00012 4.2E-09 54.8 5.1 32 38-69 14-48 (186)
210 2eyu_A Twitching motility prot 97.5 8.9E-05 3E-09 59.2 4.5 30 33-62 21-50 (261)
211 3foz_A TRNA delta(2)-isopenten 97.5 7.8E-05 2.7E-09 61.0 4.1 33 37-69 10-42 (316)
212 1pzn_A RAD51, DNA repair and r 97.5 0.00019 6.5E-09 59.7 6.5 29 33-61 127-155 (349)
213 3tif_A Uncharacterized ABC tra 97.5 7.6E-05 2.6E-09 58.7 3.9 32 37-68 31-62 (235)
214 2dr3_A UPF0273 protein PH0284; 97.5 0.00011 3.7E-09 57.2 4.7 40 33-72 19-61 (247)
215 2qmh_A HPR kinase/phosphorylas 97.5 7E-05 2.4E-09 57.5 3.5 32 37-69 34-65 (205)
216 3e1s_A Exodeoxyribonuclease V, 97.5 0.0001 3.5E-09 65.3 4.9 33 38-70 205-240 (574)
217 3d3q_A TRNA delta(2)-isopenten 97.5 7.2E-05 2.5E-09 62.0 3.6 31 39-69 9-39 (340)
218 1s96_A Guanylate kinase, GMP k 97.4 9E-05 3.1E-09 57.7 4.0 26 37-62 16-41 (219)
219 2it1_A 362AA long hypothetical 97.4 0.00017 5.8E-09 60.3 5.9 27 39-65 31-57 (362)
220 2px0_A Flagellar biosynthesis 97.4 0.0004 1.4E-08 56.5 7.9 36 37-72 105-144 (296)
221 3sfz_A APAF-1, apoptotic pepti 97.4 0.0015 5.1E-08 61.9 12.9 58 4-72 125-189 (1249)
222 1q3t_A Cytidylate kinase; nucl 97.4 0.00013 4.4E-09 57.0 4.7 30 38-67 17-46 (236)
223 1nn5_A Similar to deoxythymidy 97.4 4.7E-05 1.6E-09 58.2 2.1 25 38-62 10-34 (215)
224 2pcj_A ABC transporter, lipopr 97.4 7.6E-05 2.6E-09 58.2 3.2 31 38-68 31-61 (224)
225 2h92_A Cytidylate kinase; ross 97.4 8.7E-05 3E-09 57.0 3.5 30 39-68 5-34 (219)
226 3tqc_A Pantothenate kinase; bi 97.4 0.00022 7.7E-09 58.6 6.1 34 39-72 94-132 (321)
227 1m7g_A Adenylylsulfate kinase; 97.4 0.00013 4.5E-09 56.0 4.4 36 35-70 23-62 (211)
228 3cmw_A Protein RECA, recombina 97.4 0.00034 1.2E-08 68.6 8.0 68 33-100 30-124 (1706)
229 1rz3_A Hypothetical protein rb 97.4 0.00019 6.5E-09 54.7 5.1 34 38-71 23-59 (201)
230 3exa_A TRNA delta(2)-isopenten 97.4 9.4E-05 3.2E-09 60.7 3.5 31 39-69 5-35 (322)
231 4gp7_A Metallophosphoesterase; 97.4 6.6E-05 2.3E-09 55.9 2.4 21 37-57 9-29 (171)
232 1b0u_A Histidine permease; ABC 97.4 0.00011 3.8E-09 58.7 3.8 31 38-68 33-63 (262)
233 1cr0_A DNA primase/helicase; R 97.4 0.00019 6.4E-09 57.9 5.2 38 33-70 31-72 (296)
234 2onk_A Molybdate/tungstate ABC 97.4 0.00014 4.8E-09 57.4 4.3 30 38-67 25-54 (240)
235 1ltq_A Polynucleotide kinase; 97.4 7E-05 2.4E-09 60.5 2.6 30 38-67 3-33 (301)
236 3ney_A 55 kDa erythrocyte memb 97.4 0.00014 5E-09 55.6 4.2 25 38-62 20-44 (197)
237 4b3f_X DNA-binding protein smu 97.4 0.00035 1.2E-08 62.6 7.3 33 40-72 208-243 (646)
238 1g6h_A High-affinity branched- 97.4 0.00011 3.8E-09 58.5 3.5 30 39-68 35-64 (257)
239 1sgw_A Putative ABC transporte 97.4 0.00011 3.6E-09 57.1 3.3 30 39-68 37-66 (214)
240 2olj_A Amino acid ABC transpor 97.3 0.00013 4.4E-09 58.4 3.8 30 38-67 51-80 (263)
241 2qi9_C Vitamin B12 import ATP- 97.3 0.0001 3.6E-09 58.4 3.2 33 38-71 27-59 (249)
242 3gfo_A Cobalt import ATP-bindi 97.3 0.00012 4E-09 59.1 3.5 30 39-68 36-65 (275)
243 2pze_A Cystic fibrosis transme 97.3 0.00012 4.2E-09 57.2 3.5 27 38-64 35-61 (229)
244 1ji0_A ABC transporter; ATP bi 97.3 0.00012 4.2E-09 57.6 3.5 31 38-68 33-63 (240)
245 2f6r_A COA synthase, bifunctio 97.3 0.00012 4E-09 59.1 3.4 29 39-68 77-105 (281)
246 2cbz_A Multidrug resistance-as 97.3 9.3E-05 3.2E-09 58.3 2.7 27 37-63 31-57 (237)
247 1vpl_A ABC transporter, ATP-bi 97.3 0.00015 5E-09 57.8 3.8 31 38-68 42-72 (256)
248 2ixe_A Antigen peptide transpo 97.3 0.00015 5.3E-09 58.1 3.9 31 38-68 46-76 (271)
249 2ff7_A Alpha-hemolysin translo 97.3 0.00014 4.7E-09 57.6 3.5 31 38-68 36-66 (247)
250 3lnc_A Guanylate kinase, GMP k 97.3 7.3E-05 2.5E-09 58.2 1.8 24 38-61 28-52 (231)
251 2zts_A Putative uncharacterize 97.3 0.00024 8.2E-09 55.3 4.8 39 33-71 26-68 (251)
252 2yz2_A Putative ABC transporte 97.3 0.00016 5.6E-09 57.8 3.9 31 38-68 34-64 (266)
253 2i3b_A HCR-ntpase, human cance 97.3 0.00014 4.7E-09 55.3 3.3 22 40-61 4-25 (189)
254 3b85_A Phosphate starvation-in 97.3 0.00014 4.6E-09 56.2 3.2 24 37-60 22-45 (208)
255 2ihy_A ABC transporter, ATP-bi 97.3 0.00015 5.1E-09 58.5 3.5 30 39-68 49-78 (279)
256 2ewv_A Twitching motility prot 97.3 0.00021 7.3E-09 59.9 4.5 33 30-62 129-161 (372)
257 1mv5_A LMRA, multidrug resista 97.3 0.0001 3.6E-09 58.1 2.5 27 37-63 28-54 (243)
258 2yhs_A FTSY, cell division pro 97.3 0.00015 5E-09 63.0 3.6 23 39-61 295-317 (503)
259 1nlf_A Regulatory protein REPA 97.3 0.00013 4.4E-09 58.5 3.0 29 33-61 26-54 (279)
260 1p9r_A General secretion pathw 97.2 0.00043 1.5E-08 59.0 6.2 24 40-63 170-193 (418)
261 3fvq_A Fe(3+) IONS import ATP- 97.2 0.0002 7E-09 59.8 4.1 27 39-65 32-58 (359)
262 2obl_A ESCN; ATPase, hydrolase 97.2 0.00028 9.5E-09 58.7 4.9 41 27-68 60-102 (347)
263 4g1u_C Hemin import ATP-bindin 97.2 0.00013 4.3E-09 58.5 2.5 27 38-64 38-64 (266)
264 1odf_A YGR205W, hypothetical 3 97.2 0.00034 1.1E-08 56.7 5.0 26 38-63 32-57 (290)
265 2i1q_A DNA repair and recombin 97.2 0.00047 1.6E-08 56.4 5.9 28 33-60 94-121 (322)
266 2qm8_A GTPase/ATPase; G protei 97.2 0.00038 1.3E-08 57.6 5.4 36 26-61 42-79 (337)
267 2fz4_A DNA repair protein RAD2 97.2 0.00047 1.6E-08 54.0 5.7 33 39-71 110-142 (237)
268 2nq2_C Hypothetical ABC transp 97.2 0.00017 6E-09 57.3 3.1 28 38-65 32-59 (253)
269 3aez_A Pantothenate kinase; tr 97.2 0.00023 7.9E-09 58.3 3.9 25 38-62 91-115 (312)
270 2yyz_A Sugar ABC transporter, 97.2 0.00028 9.4E-09 59.0 4.4 27 39-65 31-57 (359)
271 2dpy_A FLII, flagellum-specifi 97.2 0.0004 1.4E-08 59.5 5.5 41 27-68 146-188 (438)
272 1w4r_A Thymidine kinase; type 97.2 0.00065 2.2E-08 51.8 6.0 32 40-71 23-57 (195)
273 2zu0_C Probable ATP-dependent 97.2 0.00017 5.8E-09 57.8 2.9 24 38-61 47-70 (267)
274 3gmt_A Adenylate kinase; ssgci 97.2 0.00025 8.7E-09 55.6 3.8 93 40-132 11-132 (230)
275 2v3c_C SRP54, signal recogniti 97.2 0.00061 2.1E-08 58.3 6.5 63 38-100 100-192 (432)
276 3kta_A Chromosome segregation 97.2 0.00021 7.1E-09 53.3 3.2 25 39-63 28-52 (182)
277 3f8t_A Predicted ATPase involv 97.2 0.00032 1.1E-08 60.5 4.7 58 39-100 241-312 (506)
278 1z47_A CYSA, putative ABC-tran 97.2 0.00026 8.9E-09 59.1 4.0 26 39-64 43-68 (355)
279 1vma_A Cell division protein F 97.2 0.0003 1E-08 57.5 4.3 34 38-71 105-141 (306)
280 1v43_A Sugar-binding transport 97.2 0.0003 1E-08 59.1 4.4 26 39-64 39-64 (372)
281 2ghi_A Transport protein; mult 97.2 0.00015 5.2E-09 57.8 2.4 26 37-62 46-71 (260)
282 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00016 5.6E-09 57.3 2.6 23 38-60 30-52 (250)
283 1c9k_A COBU, adenosylcobinamid 97.2 0.00032 1.1E-08 53.0 4.0 32 40-72 2-33 (180)
284 3fdi_A Uncharacterized protein 97.2 0.00029 9.9E-09 54.0 3.8 29 39-67 8-36 (201)
285 1kao_A RAP2A; GTP-binding prot 97.2 0.00091 3.1E-08 48.1 6.3 23 39-61 5-27 (167)
286 1r8s_A ADP-ribosylation factor 97.1 0.0016 5.3E-08 47.0 7.6 21 40-60 3-23 (164)
287 1g29_1 MALK, maltose transport 97.1 0.00029 9.8E-09 59.2 4.0 26 39-64 31-56 (372)
288 3d31_A Sulfate/molybdate ABC t 97.1 0.00025 8.5E-09 59.0 3.5 28 38-65 27-54 (348)
289 3lda_A DNA repair protein RAD5 97.1 0.00078 2.7E-08 57.1 6.7 27 33-59 174-200 (400)
290 1gtv_A TMK, thymidylate kinase 97.1 0.0001 3.6E-09 56.2 1.2 23 40-62 3-25 (214)
291 1sq5_A Pantothenate kinase; P- 97.1 0.00042 1.4E-08 56.5 4.9 24 39-62 82-105 (308)
292 3eph_A TRNA isopentenyltransfe 97.1 0.00026 8.7E-09 60.0 3.5 31 39-69 4-34 (409)
293 3jvv_A Twitching mobility prot 97.1 0.0003 1E-08 58.7 3.8 24 39-62 125-148 (356)
294 3tqf_A HPR(Ser) kinase; transf 97.1 0.00041 1.4E-08 52.0 4.1 28 37-65 16-43 (181)
295 1rj9_A FTSY, signal recognitio 97.1 0.00032 1.1E-08 57.3 3.8 24 38-61 103-126 (304)
296 2pjz_A Hypothetical protein ST 97.1 0.0003 1E-08 56.2 3.6 31 37-68 30-60 (263)
297 2gza_A Type IV secretion syste 97.1 0.00026 8.8E-09 59.1 3.3 27 37-63 175-201 (361)
298 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00025 8.5E-09 58.6 3.1 26 38-63 172-197 (330)
299 3t1o_A Gliding protein MGLA; G 97.1 0.0014 4.7E-08 48.7 7.0 24 39-62 16-39 (198)
300 1oxx_K GLCV, glucose, ABC tran 97.1 0.00024 8.2E-09 59.2 3.0 27 39-65 33-59 (353)
301 3tui_C Methionine import ATP-b 97.1 0.00044 1.5E-08 57.9 4.4 27 39-65 56-82 (366)
302 1u8z_A RAS-related protein RAL 97.1 0.0011 3.8E-08 47.7 6.1 22 39-60 6-27 (168)
303 3nh6_A ATP-binding cassette SU 97.1 0.00027 9.3E-09 57.8 3.0 29 39-67 82-110 (306)
304 1a7j_A Phosphoribulokinase; tr 97.1 0.00018 6.3E-09 58.2 2.0 35 39-73 7-44 (290)
305 2erx_A GTP-binding protein DI- 97.1 0.0012 3.9E-08 47.9 6.2 22 39-60 5-26 (172)
306 3sop_A Neuronal-specific septi 97.1 0.00027 9.3E-09 56.7 2.9 24 39-62 4-27 (270)
307 1zu4_A FTSY; GTPase, signal re 97.0 0.00053 1.8E-08 56.4 4.6 34 38-71 106-142 (320)
308 2bbs_A Cystic fibrosis transme 97.0 0.0003 1E-08 57.0 3.1 25 39-63 66-90 (290)
309 2ce2_X GTPase HRAS; signaling 97.0 0.001 3.5E-08 47.7 5.7 23 39-61 5-27 (166)
310 1nrj_B SR-beta, signal recogni 97.0 0.0011 3.8E-08 50.4 6.2 24 38-61 13-36 (218)
311 3bh0_A DNAB-like replicative h 97.0 0.00071 2.4E-08 55.3 5.3 39 33-71 64-105 (315)
312 1c1y_A RAS-related protein RAP 97.0 0.0011 3.7E-08 47.9 5.8 22 39-60 5-26 (167)
313 1lw7_A Transcriptional regulat 97.0 0.0004 1.4E-08 57.9 3.8 28 38-65 171-198 (365)
314 3e70_C DPA, signal recognition 97.0 0.0004 1.4E-08 57.3 3.7 25 37-61 129-153 (328)
315 1g5t_A COB(I)alamin adenosyltr 97.0 0.0012 4.2E-08 50.4 6.1 32 40-71 31-65 (196)
316 1z0j_A RAB-22, RAS-related pro 97.0 0.00093 3.2E-08 48.3 5.3 23 39-61 8-30 (170)
317 1ek0_A Protein (GTP-binding pr 97.0 0.0012 4.2E-08 47.6 5.9 23 39-61 5-27 (170)
318 1x6v_B Bifunctional 3'-phospho 97.0 0.00049 1.7E-08 61.5 4.3 32 38-69 53-87 (630)
319 3kl4_A SRP54, signal recogniti 97.0 0.00049 1.7E-08 58.9 4.0 34 38-71 98-134 (433)
320 1xjc_A MOBB protein homolog; s 97.0 0.00075 2.5E-08 50.4 4.6 31 39-69 6-39 (169)
321 2oap_1 GSPE-2, type II secreti 97.0 0.00042 1.4E-08 60.5 3.7 27 37-63 260-286 (511)
322 4eaq_A DTMP kinase, thymidylat 97.0 0.00056 1.9E-08 53.4 4.0 28 40-67 29-58 (229)
323 1r2q_A RAS-related protein RAB 97.0 0.0013 4.6E-08 47.4 5.9 22 39-60 8-29 (170)
324 2bov_A RAla, RAS-related prote 97.0 0.0016 5.4E-08 48.9 6.4 22 39-60 16-37 (206)
325 2oil_A CATX-8, RAS-related pro 97.0 0.0012 3.9E-08 49.3 5.5 23 39-61 27-49 (193)
326 2a9k_A RAS-related protein RAL 97.0 0.0017 5.7E-08 47.7 6.4 22 39-60 20-41 (187)
327 1np6_A Molybdopterin-guanine d 97.0 0.00056 1.9E-08 51.3 3.7 24 38-61 7-30 (174)
328 3q72_A GTP-binding protein RAD 97.0 0.00052 1.8E-08 49.7 3.4 20 40-59 5-24 (166)
329 3io5_A Recombination and repai 96.9 0.00085 2.9E-08 55.1 4.9 38 33-71 25-67 (333)
330 3upu_A ATP-dependent DNA helic 96.9 0.00092 3.1E-08 57.4 5.2 32 39-70 47-82 (459)
331 2r6a_A DNAB helicase, replicat 96.9 0.001 3.4E-08 57.2 5.4 39 33-71 199-241 (454)
332 2f9l_A RAB11B, member RAS onco 96.9 0.00052 1.8E-08 51.8 3.2 23 39-61 7-29 (199)
333 1z0f_A RAB14, member RAS oncog 96.9 0.0018 6.3E-08 47.2 6.1 24 38-61 16-39 (179)
334 4dsu_A GTPase KRAS, isoform 2B 96.9 0.0011 3.9E-08 48.8 5.0 23 39-61 6-28 (189)
335 3gd7_A Fusion complex of cysti 96.9 0.00041 1.4E-08 58.6 2.7 24 39-62 49-72 (390)
336 1fzq_A ADP-ribosylation factor 96.9 0.0016 5.5E-08 48.3 5.7 23 38-60 17-39 (181)
337 1oix_A RAS-related protein RAB 96.9 0.0005 1.7E-08 51.6 2.9 23 39-61 31-53 (191)
338 2hxs_A RAB-26, RAS-related pro 96.9 0.0021 7.3E-08 46.9 6.3 22 39-60 8-29 (178)
339 2efe_B Small GTP-binding prote 96.9 0.0015 5.2E-08 47.8 5.4 22 39-60 14-35 (181)
340 3dm5_A SRP54, signal recogniti 96.8 0.0015 5.1E-08 56.0 5.8 36 37-72 100-138 (443)
341 2f1r_A Molybdopterin-guanine d 96.8 0.00033 1.1E-08 52.3 1.5 25 39-63 4-28 (171)
342 2q6t_A DNAB replication FORK h 96.8 0.0012 4.2E-08 56.5 5.2 39 33-71 196-238 (444)
343 3hdt_A Putative kinase; struct 96.8 0.00078 2.7E-08 52.5 3.6 29 39-67 16-44 (223)
344 3tkl_A RAS-related protein RAB 96.8 0.0017 5.8E-08 48.3 5.3 23 39-61 18-40 (196)
345 2gf0_A GTP-binding protein DI- 96.8 0.0034 1.2E-07 46.7 6.9 22 39-60 10-31 (199)
346 1zd9_A ADP-ribosylation factor 96.8 0.0018 6.2E-08 48.2 5.4 22 39-60 24-45 (188)
347 4i1u_A Dephospho-COA kinase; s 96.8 0.00086 2.9E-08 51.8 3.6 31 39-70 11-41 (210)
348 2axn_A 6-phosphofructo-2-kinas 96.8 0.00085 2.9E-08 58.7 3.9 24 39-62 37-60 (520)
349 3thx_B DNA mismatch repair pro 96.8 0.0021 7E-08 59.9 6.6 23 38-60 674-696 (918)
350 2npi_A Protein CLP1; CLP1-PCF1 96.8 0.00075 2.6E-08 58.2 3.4 27 35-61 136-162 (460)
351 2qag_B Septin-6, protein NEDD5 96.8 0.00079 2.7E-08 57.4 3.5 22 40-61 45-66 (427)
352 2p5s_A RAS and EF-hand domain 96.8 0.0029 9.8E-08 47.5 6.3 23 38-60 29-51 (199)
353 2h57_A ADP-ribosylation factor 96.8 0.00098 3.4E-08 49.6 3.7 23 39-61 23-45 (190)
354 2fh5_B SR-beta, signal recogni 96.8 0.0023 7.8E-08 48.5 5.8 24 38-61 8-31 (214)
355 2ffh_A Protein (FFH); SRP54, s 96.8 0.0017 5.7E-08 55.5 5.4 35 37-71 98-135 (425)
356 1zbd_A Rabphilin-3A; G protein 96.7 0.0018 6.3E-08 48.6 5.1 24 38-61 9-32 (203)
357 3cr8_A Sulfate adenylyltranfer 96.7 0.00059 2E-08 60.1 2.7 35 37-71 369-407 (552)
358 4a1f_A DNAB helicase, replicat 96.7 0.0016 5.4E-08 53.9 5.0 38 33-70 42-82 (338)
359 1vt4_I APAF-1 related killer D 96.7 0.011 3.6E-07 56.0 10.9 34 38-71 151-190 (1221)
360 2wji_A Ferrous iron transport 96.7 0.00077 2.6E-08 49.2 2.8 22 39-60 5-26 (165)
361 2fg5_A RAB-22B, RAS-related pr 96.7 0.0019 6.5E-08 48.2 5.0 23 39-61 25-47 (192)
362 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00094 3.2E-08 48.6 3.2 22 40-61 26-47 (149)
363 1tq4_A IIGP1, interferon-induc 96.7 0.00081 2.8E-08 57.2 3.2 22 40-61 72-93 (413)
364 3dz8_A RAS-related protein RAB 96.7 0.0017 5.8E-08 48.4 4.5 23 39-61 25-47 (191)
365 1m8p_A Sulfate adenylyltransfe 96.7 0.0012 4.3E-08 58.4 4.3 33 39-71 398-434 (573)
366 1x3s_A RAS-related protein RAB 96.7 0.002 7E-08 47.7 5.0 23 39-61 17-39 (195)
367 3thx_A DNA mismatch repair pro 96.7 0.0026 9E-08 59.3 6.6 21 39-59 664-684 (934)
368 2zej_A Dardarin, leucine-rich 96.7 0.00071 2.4E-08 50.3 2.3 21 40-60 5-25 (184)
369 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0011 3.9E-08 58.2 3.9 26 37-62 47-72 (538)
370 2atv_A RERG, RAS-like estrogen 96.7 0.0033 1.1E-07 47.0 6.0 23 38-60 29-51 (196)
371 2ged_A SR-beta, signal recogni 96.7 0.00087 3E-08 49.9 2.7 25 37-61 48-72 (193)
372 2dyk_A GTP-binding protein; GT 96.6 0.0011 3.9E-08 47.5 3.2 22 40-61 4-25 (161)
373 2il1_A RAB12; G-protein, GDP, 96.6 0.0026 8.8E-08 47.5 5.2 22 39-60 28-49 (192)
374 1zj6_A ADP-ribosylation factor 96.6 0.0027 9.1E-08 47.1 5.2 23 37-59 16-38 (187)
375 1jr3_D DNA polymerase III, del 96.6 0.024 8.3E-07 46.3 11.5 62 37-101 18-90 (343)
376 2www_A Methylmalonic aciduria 96.6 0.0054 1.9E-07 50.8 7.4 23 39-61 76-98 (349)
377 1tf7_A KAIC; homohexamer, hexa 96.6 0.0019 6.4E-08 56.5 4.8 38 33-70 277-317 (525)
378 2wjg_A FEOB, ferrous iron tran 96.6 0.0011 3.9E-08 49.0 3.0 22 39-60 9-30 (188)
379 3bgw_A DNAB-like replicative h 96.6 0.002 6.9E-08 55.2 4.9 39 33-71 193-234 (444)
380 1z2a_A RAS-related protein RAB 96.6 0.0013 4.6E-08 47.4 3.3 22 39-60 7-28 (168)
381 1p5z_B DCK, deoxycytidine kina 96.6 0.00061 2.1E-08 54.0 1.5 24 39-62 26-49 (263)
382 2hup_A RAS-related protein RAB 96.6 0.0042 1.4E-07 46.8 6.1 22 39-60 31-52 (201)
383 4edh_A DTMP kinase, thymidylat 96.6 0.0021 7.2E-08 49.6 4.4 29 40-68 9-40 (213)
384 2p67_A LAO/AO transport system 96.6 0.0043 1.5E-07 51.2 6.6 24 38-61 57-80 (341)
385 3p32_A Probable GTPase RV1496/ 96.6 0.002 7E-08 53.4 4.6 32 39-70 81-115 (355)
386 2vp4_A Deoxynucleoside kinase; 96.6 0.0016 5.3E-08 50.6 3.7 27 40-67 23-49 (230)
387 1pui_A ENGB, probable GTP-bind 96.6 0.00051 1.7E-08 52.0 0.8 28 34-61 23-50 (210)
388 2nzj_A GTP-binding protein REM 96.6 0.0012 4E-08 48.1 2.8 22 39-60 6-27 (175)
389 2gk6_A Regulator of nonsense t 96.6 0.0023 7.8E-08 57.2 5.1 23 39-61 197-219 (624)
390 3b60_A Lipid A export ATP-bind 96.6 0.0014 4.8E-08 58.1 3.7 30 39-68 371-400 (582)
391 4ag6_A VIRB4 ATPase, type IV s 96.5 0.003 1E-07 53.0 5.5 35 37-71 35-72 (392)
392 1u0l_A Probable GTPase ENGC; p 96.5 0.0011 3.8E-08 53.8 2.6 27 39-65 171-197 (301)
393 3b5x_A Lipid A export ATP-bind 96.5 0.0014 5E-08 57.9 3.6 37 28-64 358-396 (582)
394 1f6b_A SAR1; gtpases, N-termin 96.5 0.002 6.8E-08 48.6 3.9 31 29-59 16-47 (198)
395 2ocp_A DGK, deoxyguanosine kin 96.5 0.0015 5.1E-08 51.0 3.3 24 39-62 4-27 (241)
396 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0015 5.2E-08 47.6 3.2 22 39-60 9-30 (177)
397 1g8f_A Sulfate adenylyltransfe 96.5 0.002 6.7E-08 56.3 4.3 35 38-72 396-435 (511)
398 1tf7_A KAIC; homohexamer, hexa 96.5 0.0012 4.1E-08 57.7 3.0 37 35-71 37-77 (525)
399 1z08_A RAS-related protein RAB 96.5 0.0016 5.4E-08 47.2 3.2 22 39-60 8-29 (170)
400 3euj_A Chromosome partition pr 96.5 0.0017 5.9E-08 56.2 3.8 26 38-63 30-55 (483)
401 2qnr_A Septin-2, protein NEDD5 96.5 0.00082 2.8E-08 54.7 1.7 21 40-60 21-41 (301)
402 1ls1_A Signal recognition part 96.5 0.0031 1.1E-07 51.0 5.2 33 38-70 99-134 (295)
403 2b6h_A ADP-ribosylation factor 96.5 0.003 1E-07 47.3 4.7 22 38-59 30-51 (192)
404 1g16_A RAS-related protein SEC 96.5 0.0015 5E-08 47.3 2.9 22 39-60 5-26 (170)
405 2gj8_A MNME, tRNA modification 96.5 0.0013 4.6E-08 48.4 2.7 22 39-60 6-27 (172)
406 2rcn_A Probable GTPase ENGC; Y 96.5 0.0012 4E-08 55.1 2.6 24 39-62 217-240 (358)
407 3q85_A GTP-binding protein REM 96.5 0.0015 5E-08 47.4 2.8 20 40-59 5-24 (169)
408 1ky3_A GTP-binding protein YPT 96.5 0.0017 5.9E-08 47.5 3.2 24 38-61 9-32 (182)
409 1bif_A 6-phosphofructo-2-kinas 96.5 0.00088 3E-08 57.8 1.7 25 38-62 40-64 (469)
410 3v9p_A DTMP kinase, thymidylat 96.4 0.002 6.9E-08 50.3 3.6 22 40-61 28-49 (227)
411 3llu_A RAS-related GTP-binding 96.4 0.0045 1.6E-07 46.3 5.4 23 39-61 22-44 (196)
412 2yv5_A YJEQ protein; hydrolase 96.4 0.0018 6E-08 52.7 3.3 24 39-63 167-190 (302)
413 2yl4_A ATP-binding cassette SU 96.4 0.0014 4.8E-08 58.2 2.9 30 39-68 372-401 (595)
414 3bc1_A RAS-related protein RAB 96.4 0.0019 6.6E-08 47.7 3.2 23 38-60 12-34 (195)
415 3qf4_B Uncharacterized ABC tra 96.4 0.0017 5.8E-08 57.7 3.4 31 38-68 382-412 (598)
416 3b1v_A Ferrous iron uptake tra 96.4 0.0079 2.7E-07 48.1 7.0 22 39-60 5-26 (272)
417 2lkc_A Translation initiation 96.4 0.0023 7.9E-08 46.7 3.6 23 38-60 9-31 (178)
418 1qhl_A Protein (cell division 96.4 0.00071 2.4E-08 52.9 0.8 24 40-63 30-53 (227)
419 2wsm_A Hydrogenase expression/ 96.4 0.0046 1.6E-07 47.1 5.4 25 38-62 31-55 (221)
420 3bk7_A ABC transporter ATP-bin 96.4 0.0018 6E-08 57.8 3.4 25 38-62 118-142 (607)
421 3tmk_A Thymidylate kinase; pho 96.4 0.0028 9.4E-08 49.1 4.1 28 39-66 7-34 (216)
422 3qks_A DNA double-strand break 96.4 0.0019 6.6E-08 49.3 3.2 24 40-63 26-49 (203)
423 1ko7_A HPR kinase/phosphatase; 96.4 0.0026 9E-08 52.0 4.1 28 37-65 144-171 (314)
424 3clv_A RAB5 protein, putative; 96.4 0.002 6.8E-08 47.9 3.2 23 38-60 8-30 (208)
425 3j16_B RLI1P; ribosome recycli 96.4 0.0022 7.6E-08 57.1 3.9 25 39-63 105-129 (608)
426 1q57_A DNA primase/helicase; d 96.4 0.0027 9.3E-08 55.1 4.4 39 33-71 238-280 (503)
427 1upt_A ARL1, ADP-ribosylation 96.4 0.0028 9.7E-08 45.8 3.8 23 38-60 8-30 (171)
428 4a82_A Cystic fibrosis transme 96.4 0.0013 4.5E-08 58.2 2.3 31 39-69 369-399 (578)
429 2y8e_A RAB-protein 6, GH09086P 96.4 0.002 6.7E-08 47.0 2.9 22 39-60 16-37 (179)
430 3iby_A Ferrous iron transport 96.4 0.0066 2.3E-07 48.0 6.2 22 39-60 3-24 (256)
431 2fn4_A P23, RAS-related protei 96.3 0.002 6.7E-08 47.1 2.9 22 39-60 11-32 (181)
432 3con_A GTPase NRAS; structural 96.3 0.0022 7.6E-08 47.5 3.2 23 39-61 23-45 (190)
433 1j8m_F SRP54, signal recogniti 96.3 0.0031 1E-07 51.2 4.2 34 39-72 100-136 (297)
434 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0021 7.1E-08 47.6 2.9 22 39-60 9-30 (184)
435 1svi_A GTP-binding protein YSX 96.3 0.0018 6.2E-08 48.2 2.6 23 38-60 24-46 (195)
436 1yrb_A ATP(GTP)binding protein 96.3 0.0042 1.4E-07 48.7 4.7 31 40-70 17-49 (262)
437 1yqt_A RNAse L inhibitor; ATP- 96.3 0.002 7E-08 56.5 3.1 24 39-62 314-337 (538)
438 3tw8_B RAS-related protein RAB 96.3 0.0022 7.5E-08 46.8 2.9 22 39-60 11-32 (181)
439 2bme_A RAB4A, RAS-related prot 96.3 0.0022 7.5E-08 47.2 2.9 23 39-61 12-34 (186)
440 2j37_W Signal recognition part 96.3 0.0047 1.6E-07 53.8 5.4 34 38-71 102-138 (504)
441 2cxx_A Probable GTP-binding pr 96.3 0.0018 6.3E-08 47.8 2.4 21 40-60 4-24 (190)
442 2wjy_A Regulator of nonsense t 96.3 0.0041 1.4E-07 57.2 5.2 23 39-61 373-395 (800)
443 3bk7_A ABC transporter ATP-bin 96.3 0.0021 7.2E-08 57.3 3.1 24 39-62 384-407 (607)
444 3ozx_A RNAse L inhibitor; ATP 96.3 0.0022 7.5E-08 56.3 3.2 24 40-63 28-51 (538)
445 2g6b_A RAS-related protein RAB 96.3 0.0026 9.1E-08 46.5 3.2 23 39-61 12-34 (180)
446 3qf7_A RAD50; ABC-ATPase, ATPa 96.2 0.0024 8E-08 53.4 3.2 22 40-61 26-47 (365)
447 3kkq_A RAS-related protein M-R 96.2 0.0027 9.2E-08 46.7 3.2 22 39-60 20-41 (183)
448 3ozx_A RNAse L inhibitor; ATP 96.2 0.0019 6.4E-08 56.8 2.6 25 39-63 296-320 (538)
449 1m2o_B GTP-binding protein SAR 96.2 0.0024 8.2E-08 47.7 2.9 21 39-59 25-45 (190)
450 1mh1_A RAC1; GTP-binding, GTPa 96.2 0.0027 9.4E-08 46.6 3.2 22 39-60 7-28 (186)
451 3lxx_A GTPase IMAP family memb 96.2 0.0024 8.1E-08 49.7 3.0 23 39-61 31-53 (239)
452 3lv8_A DTMP kinase, thymidylat 96.2 0.0024 8.1E-08 50.2 2.9 23 39-61 29-51 (236)
453 2gf9_A RAS-related protein RAB 96.2 0.0028 9.6E-08 47.0 3.2 23 39-61 24-46 (189)
454 2xxa_A Signal recognition part 96.2 0.0055 1.9E-07 52.4 5.4 36 37-72 100-139 (433)
455 3szr_A Interferon-induced GTP- 96.2 0.0049 1.7E-07 54.9 5.2 22 40-61 48-69 (608)
456 3pqc_A Probable GTP-binding pr 96.2 0.0023 7.7E-08 47.4 2.6 23 39-61 25-47 (195)
457 3ihw_A Centg3; RAS, centaurin, 96.2 0.0029 1E-07 47.0 3.2 22 39-60 22-43 (184)
458 1vg8_A RAS-related protein RAB 96.2 0.0029 9.9E-08 47.5 3.2 24 38-61 9-32 (207)
459 4dkx_A RAS-related protein RAB 96.2 0.0085 2.9E-07 46.2 5.8 22 39-60 15-36 (216)
460 3k53_A Ferrous iron transport 96.2 0.0023 7.9E-08 50.9 2.7 23 39-61 5-27 (271)
461 3qf4_A ABC transporter, ATP-bi 96.2 0.0023 7.8E-08 56.8 2.9 29 39-67 371-399 (587)
462 3bwd_D RAC-like GTP-binding pr 96.2 0.0031 1.1E-07 46.1 3.2 23 38-60 9-31 (182)
463 1w1w_A Structural maintenance 96.2 0.0042 1.4E-07 52.8 4.3 27 38-64 27-53 (430)
464 2iwr_A Centaurin gamma 1; ANK 96.2 0.0023 7.8E-08 46.9 2.4 22 39-60 9-30 (178)
465 2hf9_A Probable hydrogenase ni 96.2 0.0061 2.1E-07 46.6 4.9 24 38-61 39-62 (226)
466 1knx_A Probable HPR(Ser) kinas 96.2 0.0027 9.3E-08 51.9 3.0 29 37-66 147-175 (312)
467 1t9h_A YLOQ, probable GTPase E 96.2 0.00088 3E-08 54.7 0.1 26 38-63 174-199 (307)
468 3c5c_A RAS-like protein 12; GD 96.1 0.0032 1.1E-07 46.9 3.2 22 39-60 23-44 (187)
469 3reg_A RHO-like small GTPase; 96.1 0.0033 1.1E-07 46.9 3.2 23 39-61 25-47 (194)
470 1z06_A RAS-related protein RAB 96.1 0.0033 1.1E-07 46.7 3.2 22 39-60 22-43 (189)
471 2qag_C Septin-7; cell cycle, c 96.1 0.0022 7.6E-08 54.6 2.4 22 40-61 34-55 (418)
472 2a5j_A RAS-related protein RAB 96.1 0.0034 1.2E-07 46.7 3.2 22 40-61 24-45 (191)
473 2bcg_Y Protein YP2, GTP-bindin 96.1 0.003 1E-07 47.6 2.9 22 39-60 10-31 (206)
474 3ice_A Transcription terminati 96.1 0.0033 1.1E-07 53.0 3.4 23 39-61 176-198 (422)
475 3t5g_A GTP-binding protein RHE 96.1 0.0031 1.1E-07 46.2 2.9 21 39-59 8-28 (181)
476 3ld9_A DTMP kinase, thymidylat 96.1 0.0034 1.2E-07 48.9 3.2 24 40-63 24-47 (223)
477 3oes_A GTPase rhebl1; small GT 96.1 0.0031 1.1E-07 47.4 2.9 23 39-61 26-48 (201)
478 3cph_A RAS-related protein SEC 96.1 0.0036 1.2E-07 47.2 3.2 23 38-60 21-43 (213)
479 1ksh_A ARF-like protein 2; sma 96.1 0.0028 9.4E-08 46.8 2.5 24 37-60 18-41 (186)
480 3gj0_A GTP-binding nuclear pro 96.1 0.0031 1.1E-07 48.1 2.8 23 39-61 17-40 (221)
481 4tmk_A Protein (thymidylate ki 96.1 0.0032 1.1E-07 48.6 2.9 22 40-61 6-27 (213)
482 2cjw_A GTP-binding protein GEM 96.1 0.0038 1.3E-07 46.8 3.2 22 39-60 8-29 (192)
483 4aby_A DNA repair protein RECN 96.0 0.0015 5E-08 55.1 0.9 25 39-63 62-86 (415)
484 1w36_D RECD, exodeoxyribonucle 96.0 0.0037 1.3E-07 55.7 3.5 24 38-61 165-188 (608)
485 1gwn_A RHO-related GTP-binding 96.0 0.0035 1.2E-07 47.6 2.9 22 39-60 30-51 (205)
486 1moz_A ARL1, ADP-ribosylation 96.0 0.0042 1.4E-07 45.6 3.3 23 37-59 18-40 (183)
487 1nij_A Hypothetical protein YJ 96.0 0.0027 9.3E-08 51.9 2.4 22 40-61 7-28 (318)
488 3j16_B RLI1P; ribosome recycli 96.0 0.0045 1.5E-07 55.2 3.9 23 40-62 381-403 (608)
489 2gks_A Bifunctional SAT/APS ki 96.0 0.0055 1.9E-07 53.9 4.4 33 39-71 374-409 (546)
490 2ew1_A RAS-related protein RAB 96.0 0.0037 1.3E-07 47.4 2.9 22 39-60 28-49 (201)
491 2qtf_A Protein HFLX, GTP-bindi 96.0 0.007 2.4E-07 50.5 4.8 22 40-61 182-203 (364)
492 2xzl_A ATP-dependent helicase 96.0 0.0059 2E-07 56.1 4.6 22 39-60 377-398 (802)
493 1e9r_A Conjugal transfer prote 96.0 0.0061 2.1E-07 51.7 4.4 35 38-72 54-91 (437)
494 2o5v_A DNA replication and rep 95.9 0.0039 1.3E-07 52.0 3.0 22 40-61 29-50 (359)
495 2h17_A ADP-ribosylation factor 95.9 0.0033 1.1E-07 46.4 2.3 22 39-60 23-44 (181)
496 2fu5_C RAS-related protein RAB 95.9 0.0024 8.3E-08 46.9 1.5 23 38-60 9-31 (183)
497 2q3h_A RAS homolog gene family 95.9 0.004 1.4E-07 46.6 2.8 23 38-60 21-43 (201)
498 3qkt_A DNA double-strand break 95.9 0.0043 1.5E-07 51.1 3.2 22 40-61 26-47 (339)
499 3cbq_A GTP-binding protein REM 95.9 0.0034 1.2E-07 47.2 2.4 21 39-59 25-45 (195)
500 2a5y_B CED-4; apoptosis; HET: 95.9 0.014 4.6E-07 51.2 6.5 44 6-59 131-174 (549)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-31 Score=223.94 Aligned_cols=163 Identities=21% Similarity=0.268 Sum_probs=138.5
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+++++.+.+.+..++.+++.|..+|+++++|+|||||||||||++|+++|++++.+++.++.+.+..
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccch
Confidence 699999999999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc-----------------h-----------------------------hhhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT-----------------L-----------------------------HILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~-----------------~-----------------------------~a~~ 106 (204)
...++.+|..+ ..|+||||||+|.+. + .|++
T Consensus 226 se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAll 305 (405)
T 4b4t_J 226 GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALL 305 (405)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHc
Confidence 35677888776 479999999999980 0 0999
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~ 163 (204)
||||||..|.++.|+..+|..|++.|+..........+..+... .||+++||..+|.
T Consensus 306 RpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~ 363 (405)
T 4b4t_J 306 RPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCT 363 (405)
T ss_dssp STTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHH
Confidence 99999999999999999999999988765422211223333333 6899999999873
No 2
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.4e-30 Score=219.85 Aligned_cols=163 Identities=19% Similarity=0.246 Sum_probs=137.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++|+|.+++++.+.+.+..++.+++.|..+|+++++|+|||||||||||++|+++|++++.+++.++.+++..
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSH
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchH
Confidence 699999999999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCcc-----------------ch-----------------------------hhhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYL-----------------TL-----------------------------HILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~-----------------~~-----------------------------~a~~ 106 (204)
...++.+|..+ ..|+||||||+|.+ ++ .|++
T Consensus 259 se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAll 338 (437)
T 4b4t_L 259 SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALL 338 (437)
T ss_dssp HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTT
T ss_pred HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHh
Confidence 24566777666 48999999999998 00 0899
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~ 163 (204)
||||||..|.|+.|+..+|..|++.|+..........+..+... .||+++||.++|.
T Consensus 339 RpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 339 RPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp STTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred CCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999988764322211223334433 6899999999874
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-30 Score=218.31 Aligned_cols=163 Identities=19% Similarity=0.241 Sum_probs=137.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++|.|.+++++.|.+.+..++.+++.|...|+++++|+|||||||||||++|+++|++++.+++.++.+++..
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSH
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCch
Confidence 699999999999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCcc-----------------ch-----------------------------hhhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYL-----------------TL-----------------------------HILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~-----------------~~-----------------------------~a~~ 106 (204)
...++.+|..+ ..|+||||||+|.+ ++ .|++
T Consensus 260 sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALl 339 (437)
T 4b4t_I 260 GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALI 339 (437)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSS
T ss_pred HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHh
Confidence 24567777766 47999999999998 00 0999
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~ 163 (204)
||||||.+|.|+.|+..+|..|+..|+..........+..++.. .+|+++||.++|.
T Consensus 340 RpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 397 (437)
T 4b4t_I 340 RPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCT 397 (437)
T ss_dssp CTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred cCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999988865422211223333332 6899999999884
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-29 Score=214.63 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=138.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++|+|.+++++.|.+.+..++.+++.|..+|+++++|+|||||||||||++|+++|++++.+++.++.+.+..
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSH
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCH
Confidence 699999999999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc-----------------h-----------------------------hhhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT-----------------L-----------------------------HILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~-----------------~-----------------------------~a~~ 106 (204)
...++.+|..+ ..|+||||||+|.+. + .|++
T Consensus 287 sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALl 366 (467)
T 4b4t_H 287 GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALL 366 (467)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHH
T ss_pred HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhh
Confidence 35667777776 489999999999980 0 0999
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCC---CcHHHHHHHhhhCCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEH---PLLTEIDELIEKANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~i~~~~~ 163 (204)
||||||.+|.|+.|+..+|..|++.|+..... .....++..+ .||+++||.++|.
T Consensus 367 RpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T--~GfSGADI~~l~~ 424 (467)
T 4b4t_H 367 RPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLC--PNSTGAELRSVCT 424 (467)
T ss_dssp STTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHC--CSCCHHHHHHHHH
T ss_pred ccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHC--CCCCHHHHHHHHH
Confidence 99999999999999999999999988865422 2233444333 5899999999884
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-29 Score=217.93 Aligned_cols=161 Identities=18% Similarity=0.242 Sum_probs=136.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++|+|.+++++.+.+.+..++.+++.|..+|+++++|+|||||||||||++|+++|++++.+++.++.+.+..
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSH
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccch
Confidence 699999999999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCcc-----------------ch-----------------------------hhhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYL-----------------TL-----------------------------HILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~-----------------~~-----------------------------~a~~ 106 (204)
...++.+|..+ ..|+||||||+|.+ ++ .|++
T Consensus 259 se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~All 338 (434)
T 4b4t_M 259 GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALL 338 (434)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTC
T ss_pred HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHh
Confidence 24567777665 37999999999988 00 0899
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCC---CCcHHHHHHHhhhCCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITE---HPLLTEIDELIEKANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~i~~~~~ 163 (204)
||||||..|.|+.|+..+|..|++.|+.... ......++..+ .||+++||.++|.
T Consensus 339 RpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t--~G~sGADi~~l~~ 396 (434)
T 4b4t_M 339 RSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARST--DEFNGAQLKAVTV 396 (434)
T ss_dssp STTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHC--SSCCHHHHHHHHH
T ss_pred cCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhC--CCCCHHHHHHHHH
Confidence 9999999999999999999999988775432 22233443333 6899999999884
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.4e-29 Score=212.80 Aligned_cols=163 Identities=21% Similarity=0.316 Sum_probs=136.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+++++.+.+.+..++.+++.|..+|+++++|+|||||||||||++|+++|++++.+++.++.+++..
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge 249 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGE 249 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccch
Confidence 699999999999999999999999999999999999999999999999999999999999999999999988642
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCcc-----------------ch-----------------------------hhhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYL-----------------TL-----------------------------HILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~-----------------~~-----------------------------~a~~ 106 (204)
...++.+|..+ ..|+|+||||+|.+ ++ .|++
T Consensus 250 ~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~All 329 (428)
T 4b4t_K 250 GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALL 329 (428)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHH
T ss_pred hHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhh
Confidence 35677787776 47999999999987 00 0999
Q ss_pred hccccceeEecC-CCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMS-YCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~-~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~ 163 (204)
||||||..|.|+ .|+..+|..|+..++..........+..++.. .||+++||..+|.
T Consensus 330 RpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 330 RPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp SSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999996 89999999999888754322111223333332 6899999999883
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.93 E-value=1.5e-25 Score=204.20 Aligned_cols=175 Identities=15% Similarity=0.214 Sum_probs=142.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++|.|.++++++|.+.+...+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+++.++.+++.+
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ge 281 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTH
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchH
Confidence 589999999999999999999899999999999999999999999999999999999999999999999877532
Q ss_pred -hHHHHHHHHhcC--CCeEEEEecCCccc------------------------------------------h-hhhhhcc
Q 041769 76 -NMELRNMLIATK--NKSILVVGDIDYLT------------------------------------------L-HILLRSS 109 (204)
Q Consensus 76 -~~~~~~~~~~~~--~~~il~iDeid~~~------------------------------------------~-~a~~r~~ 109 (204)
...++.+|..+. .|+||||||+|.+. + .+++|+|
T Consensus 282 se~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~G 361 (806)
T 3cf2_A 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361 (806)
T ss_dssp HHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTT
T ss_pred HHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCc
Confidence 356778888774 78999999999980 0 0888899
Q ss_pred ccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHHhcCCCHHHHHHhHHHHHH
Q 041769 110 CMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQLMRNKVPEIALRGLTDVFK 180 (204)
Q Consensus 110 R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~ 180 (204)
||+..|.++.|+..+|..|++.++..........+..+.. ..+|+++|+..+|. +.++..+.+...
T Consensus 362 RFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~-----eA~~~A~~r~~~ 428 (806)
T 3cf2_A 362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS-----EAALQAIRKKMD 428 (806)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred ccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH-----HHHHHHHHhccc
Confidence 9999999999999999999998876542222223333443 37899999999883 334444444443
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.92 E-value=5.3e-26 Score=207.25 Aligned_cols=174 Identities=14% Similarity=0.231 Sum_probs=128.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|+++.|.+++++.+.+.+...+.+++.|...|...++|+|||||||||||.+|+++|.+++.+++.++.+++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGe 554 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 554 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSS
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccch
Confidence 58999999999999999998888888999999999999999999999999999999999999999999887752
Q ss_pred ChHHHHHHHHhcC--CCeEEEEecCCccc-----------------h-----------------------------hhhh
Q 041769 75 ENMELRNMLIATK--NKSILVVGDIDYLT-----------------L-----------------------------HILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~~--~~~il~iDeid~~~-----------------~-----------------------------~a~~ 106 (204)
+...++++|..+. .|+||||||+|.+. + .|++
T Consensus 555 se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~All 634 (806)
T 3cf2_A 555 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAIL 634 (806)
T ss_dssp CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHH
T ss_pred HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHc
Confidence 4567888988873 78999999999980 0 0999
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHHhcCCCHHHHHHhHHHHH
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQLMRNKVPEIALRGLTDVF 179 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~~~~~~~~~~~~~~~~~ 179 (204)
||||||..|.++.|+.++|..|++.++..........+..+.+. .+||++||.++|. +.++..+.+.+
T Consensus 635 RpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~-----~A~~~a~r~~~ 703 (806)
T 3cf2_A 635 RPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ-----RACKLAIRESI 703 (806)
T ss_dssp STTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHH-----HHHHHHHHHHH
T ss_pred CCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH-----HHHHHHHHHHH
Confidence 99999999999999999999999888765432222334444443 5899999999983 44444444443
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.91 E-value=5.1e-23 Score=167.43 Aligned_cols=163 Identities=15% Similarity=0.228 Sum_probs=129.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+++++.+.+.+...+.++..+..+++..+.|++|+||||||||++++++|+.++..++.++...+..
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~ 87 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGE 87 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhH
Confidence 589999999999999999988899999999999999999999999999999999999999999999998877642
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCcc---------------------chh----------------------hhhhcc
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYL---------------------TLH----------------------ILLRSS 109 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~---------------------~~~----------------------a~~r~~ 109 (204)
...+..+|..+ ..++++++||+|.+ .++ +++|||
T Consensus 88 ~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~g 167 (274)
T 2x8a_A 88 SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPG 167 (274)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTT
T ss_pred HHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcc
Confidence 13455666654 46899999999975 011 889999
Q ss_pred ccceeEecCCCCHHHHHHHHHHhhCCC------CCCcHHHHHHHhhhCCCCHHHHHHHHh
Q 041769 110 CMDMHIHMSYCTPFRFKMLASNYFGIT------EHPLLTEIDELIEKANVTLADVVEQLM 163 (204)
Q Consensus 110 R~~~~i~~~~p~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~i~~~~~ 163 (204)
|||..|.++.|+..+|..|++.+.... .......+...+...+|+++|+..+|.
T Consensus 168 Rfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 168 RLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 999999999999999999999887431 112223333322335899999999883
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.89 E-value=1e-21 Score=161.62 Aligned_cols=161 Identities=16% Similarity=0.238 Sum_probs=130.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|++++|.+++++.+.+.+...+..++.|..+++..+.+++||||||||||++|+++|+.++.+++.++.+.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~ 92 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 92 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCc
Confidence 58999999999999999999888999999999999999999999999999999999999999999999876642
Q ss_pred ChHHHHHHHHhc--CCCeEEEEecCCccc---------------------------------------------h-hhhh
Q 041769 75 ENMELRNMLIAT--KNKSILVVGDIDYLT---------------------------------------------L-HILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~--~~~~il~iDeid~~~---------------------------------------------~-~a~~ 106 (204)
....+..+|..+ ..+++|+|||+|.+. + .+++
T Consensus 93 ~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~ 172 (301)
T 3cf0_A 93 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAIL 172 (301)
T ss_dssp CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGG
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHh
Confidence 224456666665 367999999999641 0 1678
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCC---CcHHHHHHHhhhCCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEH---PLLTEIDELIEKANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~i~~~~~ 163 (204)
|+|||+..+.++.|+..++..++..++..... .....+... ..+++++++.++|.
T Consensus 173 r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~--~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 173 RPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM--TNGFSGADLTEICQ 230 (301)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHT--CSSCCHHHHHHHHH
T ss_pred cCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHH--cCCCCHHHHHHHHH
Confidence 88999999999999999999999888764322 222333322 36889999998873
No 11
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.87 E-value=9e-21 Score=154.02 Aligned_cols=162 Identities=19% Similarity=0.227 Sum_probs=128.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+++++.+.+.+......++.+..+|...+.+++|+||||||||++|+++|+.++.+++.++.+.+..
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~ 94 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGE 94 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccch
Confidence 589999999999999999998888999999999999999999999999999999999999999999999877632
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc-----------------h-----------------------------hhhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT-----------------L-----------------------------HILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~-----------------~-----------------------------~a~~ 106 (204)
...+...|... ..+++|+|||+|.+. + .+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~ 174 (285)
T 3h4m_A 95 GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAIL 174 (285)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHc
Confidence 13344455444 367899999998751 0 0677
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHH
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQL 162 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~ 162 (204)
|++||+..+.++.|+.+++..++..+...........+..+.. ..++++.++..++
T Consensus 175 ~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~ 231 (285)
T 3h4m_A 175 RPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAIC 231 (285)
T ss_dssp STTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHH
T ss_pred CCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHH
Confidence 7889999999999999999999988876432222222333333 2578998888866
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.7e-20 Score=154.56 Aligned_cols=160 Identities=20% Similarity=0.284 Sum_probs=126.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc-CCceEEeecCCccC----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL-NFDVYDLELTTFKE---- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-~~~~~~~~~~~~~~---- 75 (204)
+|++++|.+++++.+.+.+...+..++.|.. +...++|+|||||||||||++|+++|+++ +.+++.++.+.+..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g 88 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 88 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhh
Confidence 5999999999999999998888877776653 34556899999999999999999999999 88999999887632
Q ss_pred --hHHHHHHHHhc--CCCeEEEEecCCccc-------------------------------------------h-hhhhh
Q 041769 76 --NMELRNMLIAT--KNKSILVVGDIDYLT-------------------------------------------L-HILLR 107 (204)
Q Consensus 76 --~~~~~~~~~~~--~~~~il~iDeid~~~-------------------------------------------~-~a~~r 107 (204)
...++.+|..+ ..+++|||||+|.+. + .+++|
T Consensus 89 ~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r 168 (322)
T 1xwi_A 89 ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR 168 (322)
T ss_dssp SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh
Confidence 34556666654 478999999999870 0 05666
Q ss_pred ccccceeEecCCCCHHHHHHHHHHhhCCCCCC-cHHHHHHHhhh-CCCCHHHHHHHHh
Q 041769 108 SSCMDMHIHMSYCTPFRFKMLASNYFGITEHP-LLTEIDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 108 ~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~~i~~~~~ 163 (204)
||+..+.++.|+..++..++..++...... ....+..+... .|++++++..+|.
T Consensus 169 --Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 169 --RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp --TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred --hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999887654332 33445555554 6899999999883
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.86 E-value=2.6e-20 Score=149.18 Aligned_cols=162 Identities=19% Similarity=0.266 Sum_probs=116.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+.+++.+.+.+.. +..+..|...|...+.+++||||||||||++|+++|+.++.+++.++.+.+..
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGL 82 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTH
T ss_pred CHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccCh
Confidence 589999999999999776654 56667778888888999999999999999999999999999999999887632
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc------------------h-----------------------------hhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT------------------L-----------------------------HIL 105 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~------------------~-----------------------------~a~ 105 (204)
...+...|..+ ..+++|+|||+|.+. + .++
T Consensus 83 ~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l 162 (262)
T 2qz4_A 83 GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGAL 162 (262)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGG
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHH
Confidence 23445555554 358999999999750 0 166
Q ss_pred hhccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHH--HHHHhhh-CCCCHHHHHHHHh
Q 041769 106 LRSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTE--IDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 106 ~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~-~~l~~~~i~~~~~ 163 (204)
+|++||+..+.++.|+.+++..++..++.......... ...+... .+++++++.+++.
T Consensus 163 ~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 163 MRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp GSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred hcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 77789999999999999999999888775432222222 2333332 5788988888763
No 14
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.86 E-value=1.7e-20 Score=162.84 Aligned_cols=162 Identities=20% Similarity=0.284 Sum_probs=126.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++|+|.++.++.+.+.+. ++..+..|..+|...++|++|+||||||||++++++|+.++.+++.++.+++..
T Consensus 14 ~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~ 92 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGV 92 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTH
T ss_pred CHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcc
Confidence 58999999999999977765 466778899999999999999999999999999999999999999999877532
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc---------------------------------------------h-hhhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT---------------------------------------------L-HILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~---------------------------------------------~-~a~~ 106 (204)
...++..|..+ ..+++|||||+|.+. + .+++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~all 172 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALL 172 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhc
Confidence 23455666655 478999999998750 0 0678
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~ 163 (204)
|+|||+..+.++.|+..+|..|+..++..........+..+.. ..|++++++.++|.
T Consensus 173 R~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 173 RPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred ccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHH
Confidence 8999999999999999999999988776432111111222333 25889999888763
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.84 E-value=4e-20 Score=153.37 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=124.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+++++.+.+.+......+..+.. +...+.|+|||||||||||++|+++|+.++.+++.++.+.+..
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~ 94 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 94 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGG
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccch
Confidence 5899999999999999988877777666554 3445678999999999999999999999999999999876522
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccch-------------------------------------------h-hhhhc
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLTL-------------------------------------------H-ILLRS 108 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~~-------------------------------------------~-a~~r~ 108 (204)
...+..+|..+ ..+++|||||+|.+.. + ++.|
T Consensus 95 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~- 173 (322)
T 3eie_A 95 SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR- 173 (322)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH-
T ss_pred HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc-
Confidence 23445555554 4679999999997610 0 5555
Q ss_pred cccceeEecCCCCHHHHHHHHHHhhCCCCCC-cHHHHHHHhhh-CCCCHHHHHHHHh
Q 041769 109 SCMDMHIHMSYCTPFRFKMLASNYFGITEHP-LLTEIDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 109 ~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~~i~~~~~ 163 (204)
||+..+.++.|+..++..++..++...... ....+..+... .+++++++..+|.
T Consensus 174 -Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 174 -RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp -HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred -ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999888755333 33445555554 5789999998884
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.84 E-value=3.4e-20 Score=161.78 Aligned_cols=163 Identities=15% Similarity=0.202 Sum_probs=130.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+.+++++.+.+...+..++.|..+|.+.+.++|||||||||||++|+++++.++.+++.++++.+..
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~ 281 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTH
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcch
Confidence 478999999999999999999899999999999999999999999999999999999999999999999876532
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc------------------------------------------hh-hhhhcc
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT------------------------------------------LH-ILLRSS 109 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~------------------------------------------~~-a~~r~~ 109 (204)
...+...|..+ ..+++|||||+|.+. ++ ++.|++
T Consensus 282 ~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~g 361 (489)
T 3hu3_A 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361 (489)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTT
T ss_pred hHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCC
Confidence 23455666665 367899999996540 11 667779
Q ss_pred ccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHHh
Q 041769 110 CMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQLM 163 (204)
Q Consensus 110 R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~ 163 (204)
||+..+.++.|+..++..++..+...........+..+.. ..+++++++..++.
T Consensus 362 Rf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 9999999999999999999988876432222222333333 36889999888773
No 17
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.83 E-value=5.9e-20 Score=147.36 Aligned_cols=161 Identities=18% Similarity=0.265 Sum_probs=117.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+.+++.+.+.+.. +..+..+..++...+.|++|+||||||||++++++++.++.+++.++.+.+..
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~ 88 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGV 88 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCC
T ss_pred CHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhh
Confidence 589999999999999776653 55556677778888889999999999999999999999999999998877632
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc---------------------------------------------h-hhhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT---------------------------------------------L-HILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~---------------------------------------------~-~a~~ 106 (204)
...+..+|..+ ..+++++|||+|.+. + .++.
T Consensus 89 ~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~ 168 (257)
T 1lv7_A 89 GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALL 168 (257)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGG
T ss_pred hHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHc
Confidence 34556666665 357899999996540 0 1677
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHH
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQL 162 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~ 162 (204)
|++||+..+.++.|+..++..++..++.............+.. ..|++++++.+++
T Consensus 169 r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~ 225 (257)
T 1lv7_A 169 RPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLV 225 (257)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHH
Confidence 8899999999999999999999888765432111111222222 2567888888776
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.83 E-value=1.6e-19 Score=151.85 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=124.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|++++|.+.+++.+.+.+...+..+..|.. +...+.|+|||||||||||++|+++|+.++.+++.++.+.+.
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~ 127 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 127 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcch
Confidence 5899999999999999988877777766654 445567899999999999999999999999999999877652
Q ss_pred ChHHHHHHHHhc--CCCeEEEEecCCccc--------------h-----------------------------h-hhhhc
Q 041769 75 ENMELRNMLIAT--KNKSILVVGDIDYLT--------------L-----------------------------H-ILLRS 108 (204)
Q Consensus 75 ~~~~~~~~~~~~--~~~~il~iDeid~~~--------------~-----------------------------~-a~~r~ 108 (204)
....+..+|..+ ..+++|||||+|.+. . + +++|
T Consensus 128 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r- 206 (355)
T 2qp9_X 128 SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR- 206 (355)
T ss_dssp CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc-
Confidence 224455566554 378999999999862 0 0 5555
Q ss_pred cccceeEecCCCCHHHHHHHHHHhhCCCCCC-cHHHHHHHhhh-CCCCHHHHHHHH
Q 041769 109 SCMDMHIHMSYCTPFRFKMLASNYFGITEHP-LLTEIDELIEK-ANVTLADVVEQL 162 (204)
Q Consensus 109 ~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~~i~~~~ 162 (204)
||+..+.++.|+..++..++..++...... ....+..+... .|++++++..+|
T Consensus 207 -Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 207 -RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp -TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred -ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999887654332 23345555543 578999999888
No 19
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.81 E-value=4.5e-19 Score=141.98 Aligned_cols=162 Identities=20% Similarity=0.256 Sum_probs=121.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc----C-
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK----E- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~----~- 75 (204)
+|++++|.++.+..+.+... .+..+..+..+++..+.|++|+||||||||++++++++.++..++.++...+. .
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~ 92 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV 92 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTH
T ss_pred CHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhH
Confidence 58999999999999866544 45677889999999999999999999999999999999999888888765432 1
Q ss_pred -hHHHHHHHHhcC--CCeEEEEecCCccc------------------------h----------------------hhhh
Q 041769 76 -NMELRNMLIATK--NKSILVVGDIDYLT------------------------L----------------------HILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~~--~~~il~iDeid~~~------------------------~----------------------~a~~ 106 (204)
...+..+|+... .++++++||+|.+. + .+++
T Consensus 93 ~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~ 172 (254)
T 1ixz_A 93 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALL 172 (254)
T ss_dssp HHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGG
T ss_pred HHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHc
Confidence 234556666653 57899999997540 0 0788
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~ 163 (204)
|++||+..+.++.|+.+++..++..+...........+..+... .+++++++.+++.
T Consensus 173 r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 173 RPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 88999999999999999999998877643211111112233332 5778888888773
No 20
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.81 E-value=7.6e-19 Score=151.75 Aligned_cols=160 Identities=19% Similarity=0.270 Sum_probs=121.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc-CCceEEeecCCccC----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL-NFDVYDLELTTFKE---- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-~~~~~~~~~~~~~~---- 75 (204)
+|++++|.+.+++.+.+.+...+..+..|.. +...++|+|||||||||||++|+++|+.+ +.+++.++.+.+..
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g 210 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 210 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--------
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcc
Confidence 5899999999999998888777766666553 23456889999999999999999999999 88999998877632
Q ss_pred --hHHHHHHHHhc--CCCeEEEEecCCccc-------------------------------------------hh-hhhh
Q 041769 76 --NMELRNMLIAT--KNKSILVVGDIDYLT-------------------------------------------LH-ILLR 107 (204)
Q Consensus 76 --~~~~~~~~~~~--~~~~il~iDeid~~~-------------------------------------------~~-a~~r 107 (204)
...+..+|..+ ..+++|||||+|.+. ++ +++|
T Consensus 211 ~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r 290 (444)
T 2zan_A 211 ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR 290 (444)
T ss_dssp -CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh
Confidence 23455566554 468999999999760 00 5555
Q ss_pred ccccceeEecCCCCHHHHHHHHHHhhCCCCCC-cHHHHHHHhhh-CCCCHHHHHHHHh
Q 041769 108 SSCMDMHIHMSYCTPFRFKMLASNYFGITEHP-LLTEIDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 108 ~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~~i~~~~~ 163 (204)
||+..+.++.|+..++..++..++...... ....+..+... .|++++++..+|.
T Consensus 291 --Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 291 --RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp --TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred --hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999887654322 23345555543 6899999999883
No 21
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.81 E-value=3e-19 Score=155.86 Aligned_cols=162 Identities=21% Similarity=0.267 Sum_probs=124.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++|+|.++.+..+.+.+. ++..+..+..+++..+.|++|+||||||||++++++++.++.+++.++.+++..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~ 107 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV 107 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTH
T ss_pred CHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhh
Confidence 58999999999999876654 456667788889988999999999999999999999999999999999877632
Q ss_pred -hHHHHHHHHhcC--CCeEEEEecCCccc-----------------hh-----------------------------hhh
Q 041769 76 -NMELRNMLIATK--NKSILVVGDIDYLT-----------------LH-----------------------------ILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~~--~~~il~iDeid~~~-----------------~~-----------------------------a~~ 106 (204)
...+..+|..+. .+++++|||+|.+. ++ +++
T Consensus 108 ~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLl 187 (499)
T 2dhr_A 108 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALL 187 (499)
T ss_dssp HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccc
Confidence 134556666653 57899999998651 00 788
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~ 163 (204)
|++||+..+.++.|+..+|..|+..+...........+..+.. ..|++++++.+++.
T Consensus 188 r~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~ 245 (499)
T 2dhr_A 188 RPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245 (499)
T ss_dssp STTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred cccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 8999999999999999999999988765321111111222332 25788999888763
No 22
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.81 E-value=3.2e-20 Score=149.63 Aligned_cols=161 Identities=21% Similarity=0.320 Sum_probs=119.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+.+++.+.+.+. ++..++.+..++...+.|++|+||||||||++|+++|+.++.+++.++.+.+..
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~ 87 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGL 87 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSS
T ss_pred CHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcch
Confidence 58999999999999987665 467788899999998999999999999999999999999999999888766421
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc-----------------------------------------------h-hh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT-----------------------------------------------L-HI 104 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~-----------------------------------------------~-~a 104 (204)
...+...|..+ ..+++|+|||+|.+. + .+
T Consensus 88 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~ 167 (268)
T 2r62_A 88 GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPA 167 (268)
T ss_dssp CSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGG
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHh
Confidence 11222333332 357899999997540 0 16
Q ss_pred hhhccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhhh-CCCCHHHHHHHH
Q 041769 105 LLRSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIEK-ANVTLADVVEQL 162 (204)
Q Consensus 105 ~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~ 162 (204)
+.|++||+..+.++.|+.+++..++..++..........+..+... .+++++++.+++
T Consensus 168 l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~ 226 (268)
T 2r62_A 168 LMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANII 226 (268)
T ss_dssp GGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHH
T ss_pred HcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHH
Confidence 7778999999999999999999999887754321111112222222 467787877765
No 23
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.79 E-value=2.6e-18 Score=139.43 Aligned_cols=162 Identities=19% Similarity=0.245 Sum_probs=120.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|++++|.++++..+.+... .+..+..+..+++..+.|++|+||||||||++++++++.++..++.++...+.
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~ 116 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV 116 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTH
T ss_pred CHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhH
Confidence 58999999999998866544 45677888999999999999999999999999999999999888888765432
Q ss_pred ChHHHHHHHHhc--CCCeEEEEecCCccc------------------------h----------------------hhhh
Q 041769 75 ENMELRNMLIAT--KNKSILVVGDIDYLT------------------------L----------------------HILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~--~~~~il~iDeid~~~------------------------~----------------------~a~~ 106 (204)
....+..+|+.. ..++++++||+|.+. + .+++
T Consensus 117 ~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~ 196 (278)
T 1iy2_A 117 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALL 196 (278)
T ss_dssp HHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHc
Confidence 113345566654 357899999997530 0 0788
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~ 163 (204)
|++||+..+.++.|+.+++..++..+...........+..+.. ..+++++++.+++.
T Consensus 197 r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 197 RPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp STTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 8899999999999999999999887764321111111222222 25778888877663
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.77 E-value=7.2e-18 Score=143.13 Aligned_cols=160 Identities=21% Similarity=0.294 Sum_probs=120.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+.+++.+.+.+......+..+...+. .+.++|||||||||||++|+++|..++.+++.++++.+..
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~ 191 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGE 191 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccch
Confidence 4899999999999998888777666666555553 3578999999999999999999999999999999987643
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc--------------------------------------------hh-hhhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT--------------------------------------------LH-ILLR 107 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~--------------------------------------------~~-a~~r 107 (204)
...+..+|..+ ..+++|||||+|.+. ++ +++|
T Consensus 192 ~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~ 271 (389)
T 3vfd_A 192 GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR 271 (389)
T ss_dssp CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc
Confidence 23344555544 367899999998760 00 4555
Q ss_pred ccccceeEecCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhh-CCCCHHHHHHHHh
Q 041769 108 SSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLL-TEIDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 108 ~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~-~~l~~~~i~~~~~ 163 (204)
||+..+.++.|+..++..++..++......+. ..+..+... .+++++++..++.
T Consensus 272 --R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 272 --RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp --TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred --CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999887765433332 334444443 5788888877663
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.77 E-value=9.4e-18 Score=137.01 Aligned_cols=160 Identities=18% Similarity=0.272 Sum_probs=117.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+.+++.+.+.+......++.+..++ ..+.+++|+||||||||++|+++++.++.+++.++.+.+..
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~ 97 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGD 97 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSC
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccch
Confidence 589999999999999888877666555555444 33678999999999999999999999999999999877632
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc---------------------------------------------hh-hhh
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT---------------------------------------------LH-ILL 106 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~---------------------------------------------~~-a~~ 106 (204)
...+..++..+ ..+++|+|||+|.+. ++ +++
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 12334444433 468999999998760 00 344
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCc-HHHHHHHhhh-CCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPL-LTEIDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~-~~l~~~~i~~~~~ 163 (204)
| ||+..+.++.|+..++..++..++......+ ...+..+... .+++++++..++-
T Consensus 178 ~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 178 R--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp H--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred h--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4 8999999999999999999887765432222 2334444433 5888988887763
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=140.55 Aligned_cols=160 Identities=15% Similarity=0.263 Sum_probs=119.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccCh----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKEN---- 76 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~---- 76 (204)
+|++++|.+.+++.+.+.+...+..+..+...+ ..+.++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~ 160 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGE 160 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccch
Confidence 589999999999999888877666555554443 446789999999999999999999999999999998876431
Q ss_pred --HHHHHHHHhc--CCCeEEEEecCCccc--------------------------------------------hh-hhhh
Q 041769 77 --MELRNMLIAT--KNKSILVVGDIDYLT--------------------------------------------LH-ILLR 107 (204)
Q Consensus 77 --~~~~~~~~~~--~~~~il~iDeid~~~--------------------------------------------~~-a~~r 107 (204)
..+..+|..+ ..+++|||||+|.+. ++ +++|
T Consensus 161 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~ 240 (357)
T 3d8b_A 161 GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR 240 (357)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh
Confidence 2344444443 468999999997650 00 4444
Q ss_pred ccccceeEecCCCCHHHHHHHHHHhhCCCCCCc-HHHHHHHhhh-CCCCHHHHHHHHh
Q 041769 108 SSCMDMHIHMSYCTPFRFKMLASNYFGITEHPL-LTEIDELIEK-ANVTLADVVEQLM 163 (204)
Q Consensus 108 ~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~-~~l~~~~i~~~~~ 163 (204)
||+..+.++.|+..++..++..++......+ ...+..+... .+++++++..+|-
T Consensus 241 --Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 241 --RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp --TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred --hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999998887765432222 2344444443 5789999888764
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.72 E-value=2.2e-17 Score=151.80 Aligned_cols=162 Identities=15% Similarity=0.204 Sum_probs=126.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|++++|.+.+++++.+.+..++.+++.|..+++..+.+++|+||||||||++++++++.++.+++.++...+..
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~ 281 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhh
Confidence 589999999999999999999999999999999999999999999999999999999999999999998766532
Q ss_pred -hHHHHHHHHhc--CCCeEEEEecCCccc------------------------------------------hh-hhhhcc
Q 041769 76 -NMELRNMLIAT--KNKSILVVGDIDYLT------------------------------------------LH-ILLRSS 109 (204)
Q Consensus 76 -~~~~~~~~~~~--~~~~il~iDeid~~~------------------------------------------~~-a~~r~~ 109 (204)
...+..+|... ..++++|+||++.+. ++ ++.|++
T Consensus 282 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~g 361 (806)
T 1ypw_A 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361 (806)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTT
T ss_pred HHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhccc
Confidence 23455566655 367899999997651 00 556668
Q ss_pred ccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHH
Q 041769 110 CMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQL 162 (204)
Q Consensus 110 R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~ 162 (204)
||+..+.++.|+.+.+..++..+...........+..+.. ..+++++++..++
T Consensus 362 Rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~ 415 (806)
T 1ypw_A 362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp SSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHH
Confidence 9999999999999999999887765432211112222333 3678888887765
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.71 E-value=8.9e-20 Score=167.66 Aligned_cols=163 Identities=15% Similarity=0.246 Sum_probs=124.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK------ 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~------ 74 (204)
+|++++|.+++++.+.+.+......+..+..+++..+.+++||||||||||++|+++|+.++.+++.++.+.+.
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~ 554 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 554 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTT
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCc
Confidence 48899999999999887776555555666677778888999999999999999999999999999999988763
Q ss_pred ChHHHHHHHHhcC--CCeEEEEecCCccc---------------------------------------------h-hhhh
Q 041769 75 ENMELRNMLIATK--NKSILVVGDIDYLT---------------------------------------------L-HILL 106 (204)
Q Consensus 75 ~~~~~~~~~~~~~--~~~il~iDeid~~~---------------------------------------------~-~a~~ 106 (204)
....+..+|..+. .++++||||+|.+. + .+++
T Consensus 555 ~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~all 634 (806)
T 1ypw_A 555 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAIL 634 (806)
T ss_dssp SSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTS
T ss_pred cHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHh
Confidence 2355667777653 67899999998750 0 0888
Q ss_pred hccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh-hCCCCHHHHHHHHh
Q 041769 107 RSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE-KANVTLADVVEQLM 163 (204)
Q Consensus 107 r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~ 163 (204)
|||||+..+.++.|+.+++..|++.++..........+..+.. ..+++++++..+|.
T Consensus 635 rpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~ 692 (806)
T 1ypw_A 635 RPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp SGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHH
T ss_pred CccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHH
Confidence 8999999999999999999999988775432111111222222 25789999988773
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.71 E-value=8.7e-17 Score=131.72 Aligned_cols=145 Identities=15% Similarity=0.145 Sum_probs=96.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC-----
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE----- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~----- 75 (204)
+|+++.+...+...+.+.+..... +..+...+...+.|+|||||||||||++|+++|+.++.+++.++++.+..
T Consensus 1 ~~~~~~~~~y~~~~~~~~~~~~~~-k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~ 79 (293)
T 3t15_A 1 NLDNKLDGFYIAPAFMDKLVVHIT-KNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGE 79 (293)
T ss_dssp CCCCEETTEECCHHHHHHHHHHHH-HTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---H
T ss_pred CcccccCcccCCHHHHHHHHHHHH-HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCch
Confidence 355555555554544443332211 11112235566789999999999999999999999999999999877532
Q ss_pred -hHHHHHHHHhc------CCCeEEEEecCCccc-----------------------------------------------
Q 041769 76 -NMELRNMLIAT------KNKSILVVGDIDYLT----------------------------------------------- 101 (204)
Q Consensus 76 -~~~~~~~~~~~------~~~~il~iDeid~~~----------------------------------------------- 101 (204)
...+.+.|..+ ..++||+|||+|.+.
T Consensus 80 ~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI 159 (293)
T 3t15_A 80 PAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPII 159 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEE
Confidence 23455566554 268999999997550
Q ss_pred --------h-hhhhhccccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh
Q 041769 102 --------L-HILLRSSCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE 149 (204)
Q Consensus 102 --------~-~a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 149 (204)
+ .+++|++||+..+. .|+.+++..|+..++.... .....+..++.
T Consensus 160 ~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~~-~~~~~l~~~~~ 213 (293)
T 3t15_A 160 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTDN-VPAEDVVKIVD 213 (293)
T ss_dssp EECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGGC-CCHHHHHHHHH
T ss_pred EecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCCC-CCHHHHHHHhC
Confidence 0 08888899999887 4799999999887765332 22344555554
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.65 E-value=4.4e-15 Score=123.22 Aligned_cols=124 Identities=15% Similarity=0.238 Sum_probs=100.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|++++|.+..++.+...+...... -....+++|+||||||||++|+++++.++.+++.++...+.....+.
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~ 98 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLA 98 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHH
Confidence 5889999998888887766644321 12245699999999999999999999999999999998887778888
Q ss_pred HHHHhcCCCeEEEEecCCccchh------------------------------------------------hhhhccccc
Q 041769 81 NMLIATKNKSILVVGDIDYLTLH------------------------------------------------ILLRSSCMD 112 (204)
Q Consensus 81 ~~~~~~~~~~il~iDeid~~~~~------------------------------------------------a~~r~~R~~ 112 (204)
..+.....+++|||||++.+... ++. .||+
T Consensus 99 ~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~--~R~~ 176 (338)
T 3pfi_A 99 AILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLR--DRFG 176 (338)
T ss_dssp HHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHH--TTCS
T ss_pred HHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHH--hhcC
Confidence 88888888999999999988211 122 3888
Q ss_pred eeEecCCCCHHHHHHHHHHhhC
Q 041769 113 MHIHMSYCTPFRFKMLASNYFG 134 (204)
Q Consensus 113 ~~i~~~~p~~~~~~~i~~~~~~ 134 (204)
..+.++.|+..++..++..+..
T Consensus 177 ~~i~l~~~~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 177 MQFRLEFYKDSELALILQKAAL 198 (338)
T ss_dssp EEEECCCCCHHHHHHHHHHHHH
T ss_pred EEeeCCCcCHHHHHHHHHHHHH
Confidence 8999999999998888776654
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.60 E-value=1.1e-14 Score=119.11 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=95.4
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCC---ceeEEECCCCCcHHHHHHHHHHhcC-------CceEEeecCCc
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWK---HSYFLYGPPGTGKSSLIAAMTNYLN-------FDVYDLELTTF 73 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~g~ll~Gp~GtGKT~la~~la~~~~-------~~~~~~~~~~~ 73 (204)
+++|++.+++.+.+.+..... ...+...|+..+ .+++|+||||||||++|+++|+.++ .+++.++.+.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 689999999999887776543 455666675443 3599999999999999999999983 37888887766
Q ss_pred cC------hHHHHHHHHhcCCCeEEEEecCCcc---------chh-----------------------------------
Q 041769 74 KE------NMELRNMLIATKNKSILVVGDIDYL---------TLH----------------------------------- 103 (204)
Q Consensus 74 ~~------~~~~~~~~~~~~~~~il~iDeid~~---------~~~----------------------------------- 103 (204)
.. ...+...|... .+++|+|||+|.+ +..
T Consensus 111 ~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNP 189 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHST
T ss_pred hhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCH
Confidence 32 23345555554 5689999999955 000
Q ss_pred hhhhccccceeEecCCCCHHHHHHHHHHhhCC
Q 041769 104 ILLRSSCMDMHIHMSYCTPFRFKMLASNYFGI 135 (204)
Q Consensus 104 a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~ 135 (204)
++. .||+..+.|+.|+.+++..++..++..
T Consensus 190 ~l~--~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 190 GFR--SRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp THH--HHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred HHH--HhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 222 399999999999999999988877653
No 32
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.59 E-value=3.1e-14 Score=117.17 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=108.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|++++|.+..+..+...+...... + ..+.+++|+||||||||++|+++++.++.+++.++.+.+.....+.
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~-------~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~ 81 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKAR-------K-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLA 81 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHH-------C-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHcc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHH
Confidence 5889999988888876666544221 1 1245699999999999999999999999999999988887777777
Q ss_pred HHHHh-cCCCeEEEEecCCccchh---hh----------------------------------------hh---ccccce
Q 041769 81 NMLIA-TKNKSILVVGDIDYLTLH---IL----------------------------------------LR---SSCMDM 113 (204)
Q Consensus 81 ~~~~~-~~~~~il~iDeid~~~~~---a~----------------------------------------~r---~~R~~~ 113 (204)
..+.. ...+++|+|||++.+... .+ ++ .+|++.
T Consensus 82 ~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~ 161 (324)
T 1hqc_A 82 AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGI 161 (324)
T ss_dssp HHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSC
T ss_pred HHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccE
Confidence 77776 577899999999998221 00 00 147877
Q ss_pred eEecCCCCHHHHHHHHHHhhCCCCCCcH-HHHHHHhhhCCCCHHHHHHHH
Q 041769 114 HIHMSYCTPFRFKMLASNYFGITEHPLL-TEIDELIEKANVTLADVVEQL 162 (204)
Q Consensus 114 ~i~~~~p~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~~~ 162 (204)
.+.++.|+.+++..++..+.......+. ..+..+.....-.+.++.+++
T Consensus 162 ~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l 211 (324)
T 1hqc_A 162 VEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLF 211 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 8999999999988888776643322222 233344443333444544443
No 33
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.58 E-value=3.1e-14 Score=117.47 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=99.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|++++|++..+..+.+.+. . -..+..++++||||||||++++++++.++.+++.++.+... ...++
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~----~--------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~~i~ 90 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITS----K--------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-IDFVR 90 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHH----T--------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HHHHH
T ss_pred CHHHHhCcHHHHHHHHHHHH----c--------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HHHHH
Confidence 58899999887776655444 1 12245588889999999999999999999999999987754 34444
Q ss_pred HHHHh----cC---CCeEEEEecCCccc-hh------------------------------hhhhccccceeEecCCCCH
Q 041769 81 NMLIA----TK---NKSILVVGDIDYLT-LH------------------------------ILLRSSCMDMHIHMSYCTP 122 (204)
Q Consensus 81 ~~~~~----~~---~~~il~iDeid~~~-~~------------------------------a~~r~~R~~~~i~~~~p~~ 122 (204)
..+.. .. .+.+|+|||+|.++ .. ++. .|+. .+.|+.|+.
T Consensus 91 ~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~--sR~~-~i~~~~~~~ 167 (324)
T 3u61_B 91 GPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ--SRCR-VITFGQPTD 167 (324)
T ss_dssp THHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH--HHSE-EEECCCCCH
T ss_pred HHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH--hhCc-EEEeCCCCH
Confidence 43332 12 67899999999985 22 222 2664 589999999
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHhhhCC--CCHHHHHHHHhcC--CCHHHHHHhHHHH
Q 041769 123 FRFKMLASNYFGITEHPLLTEIDELIEKAN--VTLADVVEQLMRN--KVPEIALRGLTDV 178 (204)
Q Consensus 123 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~i~~~~~~~--~~~~~~~~~~~~~ 178 (204)
.++..++..+. ..+...+...+ +++.+....+... ++.+.+++.+...
T Consensus 168 ~e~~~il~~~~--------~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 168 EDKIEMMKQMI--------RRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp HHHHHHHHHHH--------HHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHH--------HHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88777665543 23344444333 3342444444332 3444455544443
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.56 E-value=6.9e-15 Score=127.28 Aligned_cols=91 Identities=21% Similarity=0.206 Sum_probs=72.1
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC--CceEEeecCCccC----
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN--FDVYDLELTTFKE---- 75 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~--~~~~~~~~~~~~~---- 75 (204)
|++++|+++.++.+...+..+. .+...++|+|||||||||||++|+++|+.++ .+++.++.+.+..
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~--------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~ 107 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIK--------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIK 107 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSC
T ss_pred hhhccCHHHHHHHHHHHHHHHH--------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhh
Confidence 7899999999888766554332 2445568899999999999999999999999 8899999887632
Q ss_pred -hHHHHHHHHhc-----CCCeEEEEecCCcc
Q 041769 76 -NMELRNMLIAT-----KNKSILVVGDIDYL 100 (204)
Q Consensus 76 -~~~~~~~~~~~-----~~~~il~iDeid~~ 100 (204)
...+.+.|..+ ..+++|||||+|.+
T Consensus 108 ~~~~~~~~f~~a~~~~~~~~~il~iDEid~l 138 (456)
T 2c9o_A 108 KTEVLMENFRRAIGLRIKETKEVYEGEVTEL 138 (456)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHhhhhcCCcEEEEechhhc
Confidence 23366777765 36899999999876
No 35
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=3.8e-14 Score=124.42 Aligned_cols=132 Identities=14% Similarity=0.258 Sum_probs=92.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhH-HHHHHhCC---CCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccCh
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRK-EFYRNVGK---AWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKEN 76 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~---~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 76 (204)
+|++++|++..++.+.+.+..+.... ..+...|. +.+++++|+||||||||++|+++|+.++.+++.+++++....
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~ 116 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCH
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchH
Confidence 58899999999998888877654322 11222222 234679999999999999999999999999999999887654
Q ss_pred HHHHHHHH-------------h-------cCCCeEEEEecCCccch------h----------------------hhhhc
Q 041769 77 MELRNMLI-------------A-------TKNKSILVVGDIDYLTL------H----------------------ILLRS 108 (204)
Q Consensus 77 ~~~~~~~~-------------~-------~~~~~il~iDeid~~~~------~----------------------a~~r~ 108 (204)
..+...+. . ...+.+|+|||+|.+.. . ..+++
T Consensus 117 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~~~~l~~ 196 (516)
T 1sxj_A 117 TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRP 196 (516)
T ss_dssp HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTGG
T ss_pred HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCCCccchh
Confidence 43333222 1 13578999999998721 1 11111
Q ss_pred -cccceeEecCCCCHHHHHHHHHHh
Q 041769 109 -SCMDMHIHMSYCTPFRFKMLASNY 132 (204)
Q Consensus 109 -~R~~~~i~~~~p~~~~~~~i~~~~ 132 (204)
.|+...+.|+.|+..++..++...
T Consensus 197 l~~r~~~i~f~~~~~~~~~~~L~~i 221 (516)
T 1sxj_A 197 FDRVCLDIQFRRPDANSIKSRLMTI 221 (516)
T ss_dssp GTTTSEEEECCCCCHHHHHHHHHHH
T ss_pred hHhceEEEEeCCCCHHHHHHHHHHH
Confidence 355677899999988876665543
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.51 E-value=2.8e-13 Score=110.44 Aligned_cols=98 Identities=17% Similarity=0.341 Sum_probs=68.8
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHh-CCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC------
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNV-GKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE------ 75 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~------ 75 (204)
++++|++..+..+...+...+......... +-..+.+++|+||||||||++|+++++.++.+++.++++.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 358899999888877776533221100000 0123467999999999999999999999999999999877542
Q ss_pred --hHHHHHHHHhc-------CCCeEEEEecCCcc
Q 041769 76 --NMELRNMLIAT-------KNKSILVVGDIDYL 100 (204)
Q Consensus 76 --~~~~~~~~~~~-------~~~~il~iDeid~~ 100 (204)
...+...+... ..+++|+|||+|.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 13345555433 24789999999987
No 37
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.46 E-value=4.7e-14 Score=118.48 Aligned_cols=97 Identities=21% Similarity=0.284 Sum_probs=68.5
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHH-HHhCC-CCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccCh-----
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFY-RNVGK-AWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKEN----- 76 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~-~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~----- 76 (204)
.++|++..++.+...+.......... ...+. ..+.+++|+||||||||++|+++|+.++.+++.++++.+...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 36899988888877776544322210 00111 134679999999999999999999999999999998776422
Q ss_pred ---HHHHHHHHhc------CCCeEEEEecCCcc
Q 041769 77 ---MELRNMLIAT------KNKSILVVGDIDYL 100 (204)
Q Consensus 77 ---~~~~~~~~~~------~~~~il~iDeid~~ 100 (204)
..+...+... ..+++|||||+|.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l 128 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHH
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhh
Confidence 2334444443 25789999999965
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.46 E-value=1e-12 Score=109.97 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=44.9
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC--ceEEeec
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF--DVYDLEL 70 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~--~~~~~~~ 70 (204)
|++++|++..+..+......... +...+.+++|+||||||||++|+++++.++. +++.++.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~--------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIRE--------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHT--------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred hhhccChHHHHHHHHHHHHHHHc--------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 88999998887776433332211 3333568999999999999999999999975 5555553
No 39
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.43 E-value=3e-12 Score=110.48 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=83.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|++++|++...... ..+...+... ...+++||||||||||++|++|++.++.+++.++.... +...++
T Consensus 24 ~l~~ivGq~~~~~~~-~~L~~~i~~~---------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-~~~~ir 92 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAG-KPLPRAIEAG---------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-GVKEIR 92 (447)
T ss_dssp STTTCCSCHHHHSTT-SHHHHHHHHT---------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-CHHHHH
T ss_pred CHHHhCCcHHHHhch-HHHHHHHHcC---------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-CHHHHH
Confidence 478899997665211 1222222211 12569999999999999999999999999999987653 334455
Q ss_pred HHHHhc------CCCeEEEEecCCccchh------------------------------hhhhccccceeEecCCCCHHH
Q 041769 81 NMLIAT------KNKSILVVGDIDYLTLH------------------------------ILLRSSCMDMHIHMSYCTPFR 124 (204)
Q Consensus 81 ~~~~~~------~~~~il~iDeid~~~~~------------------------------a~~r~~R~~~~i~~~~p~~~~ 124 (204)
..+..+ ..+++|||||+|.++.+ ++++ |+. .+.+..|+.++
T Consensus 93 ~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~ed 169 (447)
T 3pvs_A 93 EAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTED 169 (447)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHH
T ss_pred HHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHH
Confidence 444443 46899999999998211 3333 665 57789999998
Q ss_pred HHHHHHHhhCC
Q 041769 125 FKMLASNYFGI 135 (204)
Q Consensus 125 ~~~i~~~~~~~ 135 (204)
+..++.+++..
T Consensus 170 i~~il~~~l~~ 180 (447)
T 3pvs_A 170 IEQVLTQAMED 180 (447)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 88887776543
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.43 E-value=7.3e-12 Score=100.86 Aligned_cols=94 Identities=23% Similarity=0.277 Sum_probs=63.5
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCcc-C------h
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFK-E------N 76 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~-~------~ 76 (204)
.+++.+...+.+........ ..+...+...+.+++|+||||||||++|+++++.++.+++.++.++.. + .
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~ 110 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 110 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHH
Confidence 45566555555544322221 223333455567899999999999999999999999999998776421 1 1
Q ss_pred HHHHHHHHhc--CCCeEEEEecCCcc
Q 041769 77 MELRNMLIAT--KNKSILVVGDIDYL 100 (204)
Q Consensus 77 ~~~~~~~~~~--~~~~il~iDeid~~ 100 (204)
..+...+..+ ..+++|+|||+|.+
T Consensus 111 ~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 111 QAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 3345555553 46899999999875
No 41
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.41 E-value=7.8e-12 Score=103.91 Aligned_cols=92 Identities=18% Similarity=0.333 Sum_probs=64.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELR 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|++++|++.++..+ ...+..... .+ ..+..++|+||||+||||+++++|+.++.++...+........++.
T Consensus 23 ~l~~~~g~~~~~~~l----~~~i~~~~~---~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~ 94 (334)
T 1in4_A 23 SLDEFIGQENVKKKL----SLALEAAKM---RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94 (334)
T ss_dssp SGGGCCSCHHHHHHH----HHHHHHHHH---HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred cHHHccCcHHHHHHH----HHHHHHHHh---cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence 467888886555544 333322110 01 1235699999999999999999999999887776665555555666
Q ss_pred HHHHhcCCCeEEEEecCCcc
Q 041769 81 NMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 81 ~~~~~~~~~~il~iDeid~~ 100 (204)
..+.......+++|||++.+
T Consensus 95 ~~~~~~~~~~v~~iDE~~~l 114 (334)
T 1in4_A 95 AILTSLERGDVLFIDEIHRL 114 (334)
T ss_dssp HHHHHCCTTCEEEEETGGGC
T ss_pred HHHHHccCCCEEEEcchhhc
Confidence 66666667789999999987
No 42
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.41 E-value=8.7e-13 Score=99.44 Aligned_cols=87 Identities=18% Similarity=0.362 Sum_probs=61.3
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeec
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLEL 70 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~ 70 (204)
+|++++|.++....+.+.+.. ..+.+++|+||||||||++++++++.+ +.+++.+++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred cccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 478888887766665444321 225679999999999999999999997 678888876
Q ss_pred CCccC----h----HHHHHHHH---hcCCCeEEEEecCCcc
Q 041769 71 TTFKE----N----MELRNMLI---ATKNKSILVVGDIDYL 100 (204)
Q Consensus 71 ~~~~~----~----~~~~~~~~---~~~~~~il~iDeid~~ 100 (204)
..+.. . ..+...+. ....+.+|+|||+|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l 127 (195)
T 1jbk_A 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTM 127 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGG
T ss_pred HHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHH
Confidence 55421 1 12333333 2346789999999987
No 43
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.41 E-value=8.7e-12 Score=96.02 Aligned_cols=117 Identities=19% Similarity=0.192 Sum_probs=78.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecCCccC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELTTFKE 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~~~~~ 75 (204)
+|++++|.+.....+.+.+. .. ...+++|+||||+|||++++.+++.+ ...++.++.+....
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~----~~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVE----RK---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHH----TT---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC
T ss_pred CHHHHcCcHHHHHHHHHHHh----CC---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC
Confidence 47888888877766655443 11 12349999999999999999999986 34577777766555
Q ss_pred hHHHHHHHHhc--------CCCeEEEEecCCccchh------------------------------hhhhccccceeEec
Q 041769 76 NMELRNMLIAT--------KNKSILVVGDIDYLTLH------------------------------ILLRSSCMDMHIHM 117 (204)
Q Consensus 76 ~~~~~~~~~~~--------~~~~il~iDeid~~~~~------------------------------a~~r~~R~~~~i~~ 117 (204)
...+...+... ..+.+|+|||++.+... ++. .|+. .+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~--~r~~-~i~~ 158 (226)
T 2chg_A 82 IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ--SRCA-VFRF 158 (226)
T ss_dssp HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH--TTSE-EEEC
T ss_pred hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH--HhCc-eeec
Confidence 44443333221 46789999999998211 222 2665 6788
Q ss_pred CCCCHHHHHHHHHHhh
Q 041769 118 SYCTPFRFKMLASNYF 133 (204)
Q Consensus 118 ~~p~~~~~~~i~~~~~ 133 (204)
+.++..+...++..+.
T Consensus 159 ~~~~~~~~~~~l~~~~ 174 (226)
T 2chg_A 159 KPVPKEAMKKRLLEIC 174 (226)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8888877766665443
No 44
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.40 E-value=4.3e-12 Score=103.67 Aligned_cols=92 Identities=15% Similarity=0.318 Sum_probs=61.7
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCC-CCC-ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChH
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGK-AWK-HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENM 77 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~-~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~ 77 (204)
++++|++..++.+...+...... +.- ..+ ..++|+||||||||++|+++++.+ +.+++.++++.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~------~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~ 90 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG------LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 90 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT------CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTT
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC------CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccc
Confidence 46778887777776666543210 011 112 359999999999999999999998 4568888887765432
Q ss_pred HHHHHHH------------------hcCCCeEEEEecCCcc
Q 041769 78 ELRNMLI------------------ATKNKSILVVGDIDYL 100 (204)
Q Consensus 78 ~~~~~~~------------------~~~~~~il~iDeid~~ 100 (204)
.....+. ....+++++|||+|.+
T Consensus 91 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 91 AVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp HHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred cHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc
Confidence 2222221 1134689999999998
No 45
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.39 E-value=1e-11 Score=99.58 Aligned_cols=91 Identities=13% Similarity=0.210 Sum_probs=60.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC---CceEEeecCCccChH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTTFKENM 77 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~~~~~~~~~ 77 (204)
+|++++|.+.....+.+.+..... .+.+++|+||||||||++|++++..++ .+++.++++.+....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 589999998888877666654321 235699999999999999999999885 579999988764221
Q ss_pred HHHHHHHh-----------------cCCCeEEEEecCCccch
Q 041769 78 ELRNMLIA-----------------TKNKSILVVGDIDYLTL 102 (204)
Q Consensus 78 ~~~~~~~~-----------------~~~~~il~iDeid~~~~ 102 (204)
-...+|.. ...+++|+|||++.++.
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~ 114 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM 114 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH
T ss_pred HHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH
Confidence 11111110 12468999999999843
No 46
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.38 E-value=7.2e-12 Score=114.48 Aligned_cols=121 Identities=12% Similarity=0.287 Sum_probs=84.7
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCC---CCc-eeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccCh---
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKA---WKH-SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKEN--- 76 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~-g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~--- 76 (204)
.++|++..+..+...+... ..|.. .+. +++|+||||||||++|+++++.++.+++.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 4667776666665544322 12332 122 59999999999999999999999999999998876431
Q ss_pred ----------------HHHHHHHHhcCCCeEEEEecCCccchh----------------------------------h--
Q 041769 77 ----------------MELRNMLIATKNKSILVVGDIDYLTLH----------------------------------I-- 104 (204)
Q Consensus 77 ----------------~~~~~~~~~~~~~~il~iDeid~~~~~----------------------------------a-- 104 (204)
..+...+.. ..+++|+|||++.+..+ .
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~ 609 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV 609 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSC
T ss_pred hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcch
Confidence 112333333 45799999999988111 0
Q ss_pred -------------------------hhhc---cccceeEecCCCCHHHHHHHHHHhh
Q 041769 105 -------------------------LLRS---SCMDMHIHMSYCTPFRFKMLASNYF 133 (204)
Q Consensus 105 -------------------------~~r~---~R~~~~i~~~~p~~~~~~~i~~~~~ 133 (204)
.++| +||+..+.|+.++.+++..++..++
T Consensus 610 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp C-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 2222 6998889999999999888887765
No 47
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.37 E-value=6.8e-12 Score=114.72 Aligned_cols=161 Identities=15% Similarity=0.201 Sum_probs=102.5
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCC---CCc-eeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccC
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKA---WKH-SYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKE 75 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~-g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~ 75 (204)
++++|++..++.+...+..... +.. .+. +++|+||||||||++|+++++.+ +.+++.++++.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~--------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA--------GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT--------TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHHc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 4577888777777666654321 211 122 59999999999999999999998 67899999988753
Q ss_pred h-----HHHHHHHHhcCCCeEEEEecCCccchh-----------------------------------------------
Q 041769 76 N-----MELRNMLIATKNKSILVVGDIDYLTLH----------------------------------------------- 103 (204)
Q Consensus 76 ~-----~~~~~~~~~~~~~~il~iDeid~~~~~----------------------------------------------- 103 (204)
. ..+...+.. ..+++|||||++.+...
T Consensus 563 ~~~~~~~~l~~~~~~-~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~ 641 (758)
T 3pxi_A 563 KHSTSGGQLTEKVRR-KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGEL 641 (758)
T ss_dssp SCCCC---CHHHHHH-CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHH
T ss_pred ccccccchhhHHHHh-CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHH
Confidence 2 223333322 45789999999998111
Q ss_pred -hhhhc---cccceeEecCCCCHHHHHHHHHHhhCCCCCCcHHHHHHHhh----hCCCCHHHHHHHHhc-CCCHHHHHHh
Q 041769 104 -ILLRS---SCMDMHIHMSYCTPFRFKMLASNYFGITEHPLLTEIDELIE----KANVTLADVVEQLMR-NKVPEIALRG 174 (204)
Q Consensus 104 -a~~r~---~R~~~~i~~~~p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~i~~~~~~-~~~~~~~~~~ 174 (204)
..++| +|++..+.|+.|+.+++..++..++. .+...+. ...++++. .+++.. ..+.....|.
T Consensus 642 ~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~--------~~~~~~~~~~~~~~~~~~a-~~~l~~~~~~~~~~~R~ 712 (758)
T 3pxi_A 642 KRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSD--------QLTKRLKEQDLSIELTDAA-KAKVAEEGVDLEYGARP 712 (758)
T ss_dssp HHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHH--------HHHHHHHTTTCEEEECHHH-HHHHHGGGCCTTTTTTT
T ss_pred HhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHH--------HHHHHHHhCCCeEEECHHH-HHHHHHhCCCCCCCChH
Confidence 11344 79999999999999998888876652 2222222 12345444 444433 3444445666
Q ss_pred HHHHHHh
Q 041769 175 LTDVFKI 181 (204)
Q Consensus 175 ~~~~~~~ 181 (204)
+.+.++.
T Consensus 713 L~~~i~~ 719 (758)
T 3pxi_A 713 LRRAIQK 719 (758)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 48
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.36 E-value=3.4e-12 Score=99.95 Aligned_cols=62 Identities=19% Similarity=0.353 Sum_probs=46.9
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC---CceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
+.+++|+||||||||++++++++.+. .++..++...+... +.+.+.....+.+|+|||++.+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI--STALLEGLEQFDLICIDDVDAV 116 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS--CGGGGTTGGGSSEEEEETGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--HHHHHHhccCCCEEEEeccccc
Confidence 56799999999999999999999884 67888887664321 1122233356789999999987
No 49
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.3e-11 Score=101.97 Aligned_cols=99 Identities=11% Similarity=0.164 Sum_probs=69.5
Q ss_pred CCCceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeecCCccC----------------------hHHHHHH
Q 041769 35 AWKHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLELTTFKE----------------------NMELRNM 82 (204)
Q Consensus 35 ~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~~~~~~----------------------~~~~~~~ 82 (204)
..+.+++|+||||||||++++.+++.+ ...++.+++..+.+ ...+.+.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 346779999999999999999999999 34677788655422 1234555
Q ss_pred HHhc----CCCeEEEEecCCccc---------------------------hh---hhhh---ccccc-eeEecCCCCHHH
Q 041769 83 LIAT----KNKSILVVGDIDYLT---------------------------LH---ILLR---SSCMD-MHIHMSYCTPFR 124 (204)
Q Consensus 83 ~~~~----~~~~il~iDeid~~~---------------------------~~---a~~r---~~R~~-~~i~~~~p~~~~ 124 (204)
|... ..+.++++||+|.+. +. ..+. .+|+. ..+.|+.++..+
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~e 202 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNE 202 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHH
T ss_pred HHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHH
Confidence 6553 357899999999981 00 1111 13775 578999999999
Q ss_pred HHHHHHHhh
Q 041769 125 FKMLASNYF 133 (204)
Q Consensus 125 ~~~i~~~~~ 133 (204)
...|+.+.+
T Consensus 203 l~~Il~~Rl 211 (318)
T 3te6_A 203 LQQMIITRL 211 (318)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766543
No 50
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.35 E-value=6.5e-12 Score=110.87 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=80.6
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCC-CCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccCh------
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKA-WKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKEN------ 76 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~------ 76 (204)
+++|.++++..+.+.+. +..+... .+..++|+||||||||++++++++.++.++..++++++...
T Consensus 82 di~G~~~vk~~i~~~~~--------l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLA--------VQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HCSSCHHHHHHHHHHHH--------HHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------
T ss_pred HhccHHHHHHHHHHHHH--------HHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH
Confidence 46777766666543322 2222222 24469999999999999999999999999999988764321
Q ss_pred ---------HHHHHHHHhcC-CCeEEEEecCCccch---------------------------------h----------
Q 041769 77 ---------MELRNMLIATK-NKSILVVGDIDYLTL---------------------------------H---------- 103 (204)
Q Consensus 77 ---------~~~~~~~~~~~-~~~il~iDeid~~~~---------------------------------~---------- 103 (204)
..+...|..+. .+.++||||+|.+.. +
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~ 233 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANN 233 (543)
T ss_dssp ----------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSS
T ss_pred HHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCc
Confidence 12233344442 456999999998710 0
Q ss_pred ------hhhhccccceeEecCCCCHHHHHHHHHHhh
Q 041769 104 ------ILLRSSCMDMHIHMSYCTPFRFKMLASNYF 133 (204)
Q Consensus 104 ------a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~ 133 (204)
++++ ||+ .+.++.|+.+++..++.+++
T Consensus 234 ~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 234 LATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp TTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred cccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 4444 885 58999999999988888765
No 51
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.32 E-value=1.5e-11 Score=103.52 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=68.6
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHH----------------HHhC-CCCCceeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFY----------------RNVG-KAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~----------------~~~~-~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
+.|+|++..++.+...+...+.....- ...+ ...+.+++|+||||||||++|+++|+.++.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 357999999999887775443322210 0011 12345699999999999999999999999999
Q ss_pred EEeecCCccC--------hHHHHHHHHhcC------CCeEEEEecCCcc
Q 041769 66 YDLELTTFKE--------NMELRNMLIATK------NKSILVVGDIDYL 100 (204)
Q Consensus 66 ~~~~~~~~~~--------~~~~~~~~~~~~------~~~il~iDeid~~ 100 (204)
+.+++..+.. ...+...+.... .+++|+|||++.+
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 9999877531 123344444332 5789999999987
No 52
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.32 E-value=1.3e-10 Score=90.32 Aligned_cols=118 Identities=17% Similarity=0.349 Sum_probs=75.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
.|++++|.+...+.+...+.. + ..+..++|+||||+|||++++.+++.++.
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 367888887777766554431 1 11346999999999999999999998743
Q ss_pred -------ceEEeecCCccChHHHHHHHHhcC------CCeEEEEecCCccchh---------------------------
Q 041769 64 -------DVYDLELTTFKENMELRNMLIATK------NKSILVVGDIDYLTLH--------------------------- 103 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~~------~~~il~iDeid~~~~~--------------------------- 103 (204)
.++.++.........+...+.... .+.+|+|||++.+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 223333333223344556655542 4689999999987211
Q ss_pred ---hhhhccccceeEecCCCCHHHHHHHHHHhh
Q 041769 104 ---ILLRSSCMDMHIHMSYCTPFRFKMLASNYF 133 (204)
Q Consensus 104 ---a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~ 133 (204)
.+.+ |+ ..+.++.++..+...++..++
T Consensus 169 ~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~ 198 (250)
T 1njg_A 169 LPVTILS--RC-LQFHLKALDVEQIRHQLEHIL 198 (250)
T ss_dssp SCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred CCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHH
Confidence 1111 32 467788888877776666544
No 53
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.32 E-value=2.9e-12 Score=110.05 Aligned_cols=121 Identities=14% Similarity=0.192 Sum_probs=61.3
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCC-CCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccC------
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKA-WKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKE------ 75 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~------ 75 (204)
+.|+|+++.++.+...+...+.+...+..+... .+.+++|+||||||||++++++|+.++.+++.++.+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 468999999999988887665555444333332 3578999999999999999999999999999999865422
Q ss_pred --hHHHHHHHHhcC------------------------CCeEEEEecCCcc-------c-----h-hhhhhccccceeEe
Q 041769 76 --NMELRNMLIATK------------------------NKSILVVGDIDYL-------T-----L-HILLRSSCMDMHIH 116 (204)
Q Consensus 76 --~~~~~~~~~~~~------------------------~~~il~iDeid~~-------~-----~-~a~~r~~R~~~~i~ 116 (204)
...++.+|..+. ..-+-.+|.+..- | + .++.|++|||..|+
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 233444443320 0001112222110 0 1 17888999999999
Q ss_pred cCCCCHH
Q 041769 117 MSYCTPF 123 (204)
Q Consensus 117 ~~~p~~~ 123 (204)
++.|+..
T Consensus 175 i~lP~~~ 181 (444)
T 1g41_A 175 IDVSAGV 181 (444)
T ss_dssp -------
T ss_pred EcCCCCc
Confidence 9999986
No 54
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.32 E-value=8.2e-12 Score=103.25 Aligned_cols=117 Identities=12% Similarity=0.134 Sum_probs=79.1
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHH
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRN 81 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 81 (204)
+++++|+++.+..+...+.. +.+++|+||||||||++++++++.++.+++.++........++..
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 45677776665554333221 356999999999999999999999999998888643222111110
Q ss_pred H--HH------hc-C---CCeEEEEecCCccch---------------------------------------------h-
Q 041769 82 M--LI------AT-K---NKSILVVGDIDYLTL---------------------------------------------H- 103 (204)
Q Consensus 82 ~--~~------~~-~---~~~il~iDeid~~~~---------------------------------------------~- 103 (204)
. +. .. . ..++++|||++.++. +
T Consensus 91 ~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~ 170 (331)
T 2r44_A 91 TMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPE 170 (331)
T ss_dssp EEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCH
T ss_pred ceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCH
Confidence 0 00 00 1 137999999998811 1
Q ss_pred hhhhccccceeEecCCCCHHHHHHHHHHhhCC
Q 041769 104 ILLRSSCMDMHIHMSYCTPFRFKMLASNYFGI 135 (204)
Q Consensus 104 a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~ 135 (204)
+++ .||+..+.++.|+.+++..++..+...
T Consensus 171 ~l~--~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 171 AQV--DRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp HHH--TTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred HHH--hheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 222 489889999999999999888877653
No 55
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.31 E-value=2e-12 Score=94.94 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=62.3
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHH
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELR 80 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~ 80 (204)
+++|.+.....+.+.+.... ..+..++|+||||||||++|+++++.. +.+++ ++++.+.......
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 57788777777766665432 123459999999999999999999987 66888 9888776554455
Q ss_pred HHHHhcCCCeEEEEecCCccc
Q 041769 81 NMLIATKNKSILVVGDIDYLT 101 (204)
Q Consensus 81 ~~~~~~~~~~il~iDeid~~~ 101 (204)
..+... .+++|+|||+|.+.
T Consensus 70 ~~~~~a-~~g~l~ldei~~l~ 89 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHLT 89 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGSC
T ss_pred cHHHHc-CCcEEEEcChHHCC
Confidence 555544 45799999999984
No 56
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.30 E-value=1.7e-11 Score=100.08 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=77.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecCCccC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELTTFKE 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~~~~~ 75 (204)
+|++++|++..+..+.+.+. . + ...+++|+||||+|||++++++++.+ +.+++.++.++..+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~----~-------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVE----R-------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTT----T-------T--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC
T ss_pred CHHHHhCCHHHHHHHHHHHh----C-------C--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC
Confidence 47889999877766644432 1 1 12249999999999999999999986 34577788776533
Q ss_pred hHHHHHH---HH-hc----CCCeEEEEecCCccchh------------------------------hhhhccccceeEec
Q 041769 76 NMELRNM---LI-AT----KNKSILVVGDIDYLTLH------------------------------ILLRSSCMDMHIHM 117 (204)
Q Consensus 76 ~~~~~~~---~~-~~----~~~~il~iDeid~~~~~------------------------------a~~r~~R~~~~i~~ 117 (204)
...+... +. .. ..+.+++|||+|.++.. ++. .|+. .+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~--sr~~-~i~~ 158 (319)
T 2chq_A 82 IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ--SRCA-VFRF 158 (319)
T ss_dssp TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH--TTCE-EEEC
T ss_pred hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH--hhCe-EEEe
Confidence 2222222 21 11 35789999999988221 222 2554 6888
Q ss_pred CCCCHHHHHHHHHHhhC
Q 041769 118 SYCTPFRFKMLASNYFG 134 (204)
Q Consensus 118 ~~p~~~~~~~i~~~~~~ 134 (204)
..|+..+...++...+.
T Consensus 159 ~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 159 KPVPKEAMKKRLLEICE 175 (319)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 88888887776665543
No 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=7.4e-11 Score=96.61 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=76.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC-----CceEEeecCCccC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN-----FDVYDLELTTFKE 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~-----~~~~~~~~~~~~~ 75 (204)
+|++++|++..+..+...+.. + ...+++|+||||+|||++++++++.+. ..++.++.++...
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 89 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG 89 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH
T ss_pred CHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc
Confidence 488999998877776554431 1 123599999999999999999999863 2467777665432
Q ss_pred hHHHHHHHHh----c----CCCeEEEEecCCccchh------------------------------hhhhccccceeEec
Q 041769 76 NMELRNMLIA----T----KNKSILVVGDIDYLTLH------------------------------ILLRSSCMDMHIHM 117 (204)
Q Consensus 76 ~~~~~~~~~~----~----~~~~il~iDeid~~~~~------------------------------a~~r~~R~~~~i~~ 117 (204)
...+...+.. . ..+.+++|||+|.++.. ++. .|+. .+.|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~--sr~~-~~~~ 166 (327)
T 1iqp_A 90 INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ--SRCA-IFRF 166 (327)
T ss_dssp HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH--HTEE-EEEC
T ss_pred hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH--hhCc-EEEe
Confidence 2222222211 1 35789999999998221 111 2554 5788
Q ss_pred CCCCHHHHHHHHHHhh
Q 041769 118 SYCTPFRFKMLASNYF 133 (204)
Q Consensus 118 ~~p~~~~~~~i~~~~~ 133 (204)
+.++..+...++....
T Consensus 167 ~~l~~~~~~~~l~~~~ 182 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYIA 182 (327)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 8888877766665544
No 58
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.28 E-value=1.2e-11 Score=101.98 Aligned_cols=64 Identities=25% Similarity=0.449 Sum_probs=47.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccCh--H-----HHHHHHHhcCCCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKEN--M-----ELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~il~iDeid~~ 100 (204)
+.+++||||||||||++++++++.+ +.+++.+++..+... . ...........+.+|+|||++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFL 110 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccc
Confidence 4569999999999999999999999 889999987654211 0 01111222235789999999987
No 59
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.27 E-value=4e-11 Score=103.31 Aligned_cols=64 Identities=25% Similarity=0.535 Sum_probs=47.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecCCccCh-------HHHHHHHHhcC-CCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELTTFKEN-------MELRNMLIATK-NKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~il~iDeid~~ 100 (204)
..+++||||||+|||++++++++.+ +.+++.++...+... ........... .+.+|+|||++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l 206 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFL 206 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccc
Confidence 4569999999999999999999998 788888887654211 00112222234 6889999999987
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.25 E-value=9.5e-11 Score=107.07 Aligned_cols=117 Identities=16% Similarity=0.273 Sum_probs=81.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeec
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLEL 70 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~ 70 (204)
+|++++|.+.....+.+.+. ...+.+++|+||||||||++++++++.+ +..++.+++
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 47888888776666544332 1235679999999999999999999987 667777776
Q ss_pred CCccC--------hHHHHHHHHhcC--CCeEEEEecCCcc---------chh----------------------------
Q 041769 71 TTFKE--------NMELRNMLIATK--NKSILVVGDIDYL---------TLH---------------------------- 103 (204)
Q Consensus 71 ~~~~~--------~~~~~~~~~~~~--~~~il~iDeid~~---------~~~---------------------------- 103 (204)
+.+.. ...+..++.... .+++|||||++.+ ...
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~ 330 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNI 330 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhh
Confidence 65432 134555665554 4799999999976 100
Q ss_pred -----hhhhccccceeEecCCCCHHHHHHHHHHhh
Q 041769 104 -----ILLRSSCMDMHIHMSYCTPFRFKMLASNYF 133 (204)
Q Consensus 104 -----a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~ 133 (204)
++.| ||+ .+.++.|+..++..++..+.
T Consensus 331 ~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 331 FEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHH
T ss_pred hhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHH
Confidence 2333 887 59999999999877776543
No 61
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=2.4e-11 Score=100.72 Aligned_cols=87 Identities=22% Similarity=0.372 Sum_probs=59.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC------CceEEeecCCcc
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN------FDVYDLELTTFK 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~------~~~~~~~~~~~~ 74 (204)
+|++++|++++++.+...+. .. ...+++|+||||+|||++++++++.++ ..+..++.++..
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~----~~---------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLK----SA---------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER 101 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTT----CT---------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred CHHHhhCCHHHHHHHHHHHh----cC---------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc
Confidence 47889999887766644432 11 123499999999999999999999864 357777777654
Q ss_pred ChHHHHHHH---Hh---------------cCCCeEEEEecCCcc
Q 041769 75 ENMELRNML---IA---------------TKNKSILVVGDIDYL 100 (204)
Q Consensus 75 ~~~~~~~~~---~~---------------~~~~~il~iDeid~~ 100 (204)
....+.+.+ .. ...+.+|+|||++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l 145 (353)
T 1sxj_D 102 GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145 (353)
T ss_dssp CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS
T ss_pred chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc
Confidence 433332222 11 124569999999998
No 62
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.24 E-value=1.1e-11 Score=93.25 Aligned_cols=87 Identities=17% Similarity=0.351 Sum_probs=60.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeec
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLEL 70 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~ 70 (204)
+|++++|.+.....+.+.+.. ..+.+++|+||||||||++++++++.+ +.+++.+++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred ccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 477888887665555443321 225679999999999999999999997 677888776
Q ss_pred CCcc----Ch----HHHHHHHHh---cCCCeEEEEecCCcc
Q 041769 71 TTFK----EN----MELRNMLIA---TKNKSILVVGDIDYL 100 (204)
Q Consensus 71 ~~~~----~~----~~~~~~~~~---~~~~~il~iDeid~~ 100 (204)
..+. .. ..+...+.. ...+.+|+|||++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l 127 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTV 127 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGG
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHh
Confidence 5542 11 123333332 245789999999987
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.24 E-value=4.5e-11 Score=110.66 Aligned_cols=116 Identities=14% Similarity=0.235 Sum_probs=77.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeec
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLEL 70 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~ 70 (204)
+|+.++|.++....+.+.+. . ..+.+++|+||||||||++++++|+.+ +.+++.+++
T Consensus 168 ~ld~viGr~~~i~~l~~~l~----~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILL----R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHH----C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCcccCCcHHHHHHHHHHHh----c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 47888998866666544432 1 224569999999999999999999998 788999988
Q ss_pred CCccCh--------HHHHHHHHhc---CCCeEEEEecCCccc--------hh----------------------------
Q 041769 71 TTFKEN--------MELRNMLIAT---KNKSILVVGDIDYLT--------LH---------------------------- 103 (204)
Q Consensus 71 ~~~~~~--------~~~~~~~~~~---~~~~il~iDeid~~~--------~~---------------------------- 103 (204)
+.+... ..+..++... ..+.+|||||++.+. ..
T Consensus 235 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~ 314 (854)
T 1qvr_A 235 GSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREI 314 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHH
T ss_pred HHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhh
Confidence 776421 2344555444 357899999999862 00
Q ss_pred ----hhhhccccceeEecCCCCHHHHHHHHHHh
Q 041769 104 ----ILLRSSCMDMHIHMSYCTPFRFKMLASNY 132 (204)
Q Consensus 104 ----a~~r~~R~~~~i~~~~p~~~~~~~i~~~~ 132 (204)
++. .||+. +.++.|+..++..++..+
T Consensus 315 ~~d~aL~--rRf~~-i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 315 EKDPALE--RRFQP-VYVDEPTVEETISILRGL 344 (854)
T ss_dssp TTCTTTC--SCCCC-EEECCCCHHHHHHHHHHH
T ss_pred ccCHHHH--hCCce-EEeCCCCHHHHHHHHHhh
Confidence 223 38886 999999999887777643
No 64
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.23 E-value=2.2e-10 Score=95.55 Aligned_cols=118 Identities=18% Similarity=0.356 Sum_probs=78.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----------------
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF----------------- 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~----------------- 63 (204)
+|++++|++...+.+...+.. + ..+..++|+||+|+|||++++++++.++.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 478899998777776555431 1 12345899999999999999999998854
Q ss_pred -------ceEEeecCCccChHHHHHHHHhcC------CCeEEEEecCCccchh---------------------------
Q 041769 64 -------DVYDLELTTFKENMELRNMLIATK------NKSILVVGDIDYLTLH--------------------------- 103 (204)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~~------~~~il~iDeid~~~~~--------------------------- 103 (204)
.++.++.........++.++.... .+.+++|||+|.++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 234444433222334555555442 4689999999998221
Q ss_pred ---hhhhccccceeEecCCCCHHHHHHHHHHhh
Q 041769 104 ---ILLRSSCMDMHIHMSYCTPFRFKMLASNYF 133 (204)
Q Consensus 104 ---a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~ 133 (204)
.+. .|+ ..+.+..|+..+...++..++
T Consensus 162 l~~~l~--sr~-~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 162 LPVTIL--SRC-LQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp SCHHHH--TTS-EEEECCCCCHHHHHHHHHHHH
T ss_pred CcHHHH--hhe-eEeeCCCCCHHHHHHHHHHHH
Confidence 111 244 568888888888777666544
No 65
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.23 E-value=6.2e-12 Score=95.18 Aligned_cols=94 Identities=19% Similarity=0.240 Sum_probs=61.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----CCceEEeecCCccCh
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----NFDVYDLELTTFKEN 76 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----~~~~~~~~~~~~~~~ 76 (204)
+|++++......+.+.+.+..+.. .+..+.+.+++|+|||||||||+++++++.+ |..++.++..++...
T Consensus 8 ~f~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 8 NLDTYHPKNVSQNRALLTIRVFVH------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp CSSSCCCCSHHHHHHHHHHHHHHH------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred ccccccCCCHHHHHHHHHHHHHHH------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 588888765444555455554433 3334446779999999999999999999987 666666665543210
Q ss_pred -------HHHHHHHHhcCCCeEEEEecCCcc
Q 041769 77 -------MELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 77 -------~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
......+.....+.+|+|||++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 82 LKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred HHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 000122333346789999999864
No 66
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.23 E-value=1.2e-10 Score=101.07 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=78.7
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeec
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLEL 70 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~ 70 (204)
+|+.++|.+.....+.+.+.. ....+++|+||||||||++++++|+.+ +.+++.+++
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 378899998777766544431 224579999999999999999999997 778888887
Q ss_pred CCc-cC--hHHHHHHHHhc--CCCeEEEEecCCcc-------------------c---------h-hhhhhccccceeEe
Q 041769 71 TTF-KE--NMELRNMLIAT--KNKSILVVGDIDYL-------------------T---------L-HILLRSSCMDMHIH 116 (204)
Q Consensus 71 ~~~-~~--~~~~~~~~~~~--~~~~il~iDeid~~-------------------~---------~-~a~~r~~R~~~~i~ 116 (204)
+.. .+ ...+..+|... ..+++||||.-... + + .++.| ||.. +.
T Consensus 245 ~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~ 321 (468)
T 3pxg_A 245 GTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALER--RFQP-IQ 321 (468)
T ss_dssp --------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EE
T ss_pred CccccchHHHHHHHHHHHHHhcCCeEEEEeCchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ce
Confidence 621 11 12344555544 35789999921111 0 0 14444 8985 99
Q ss_pred cCCCCHHHHHHHHHHhhCC
Q 041769 117 MSYCTPFRFKMLASNYFGI 135 (204)
Q Consensus 117 ~~~p~~~~~~~i~~~~~~~ 135 (204)
++.|+.+++..++..+...
T Consensus 322 v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 322 VDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp CCCCCHHHHHHHHHHTTTT
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 9999999998888876543
No 67
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=2.6e-10 Score=93.12 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=78.0
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecCCccC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELTTFKE 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~~~~~ 75 (204)
+|++++|++...+.+.+.+. . + . ..+++|+||||+|||++++++++.+ +..++.++.++...
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~----~-------~-~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 85 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAK----D-------G-N-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG 85 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHH----S-------C-C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS
T ss_pred CHHHHHCCHHHHHHHHHHHH----c-------C-C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC
Confidence 47889999877776655443 1 1 1 1239999999999999999999986 34577777766544
Q ss_pred hHHHHHHHHhc--------C-CCeEEEEecCCccchh-----------------------------hhhhccccceeEec
Q 041769 76 NMELRNMLIAT--------K-NKSILVVGDIDYLTLH-----------------------------ILLRSSCMDMHIHM 117 (204)
Q Consensus 76 ~~~~~~~~~~~--------~-~~~il~iDeid~~~~~-----------------------------a~~r~~R~~~~i~~ 117 (204)
...+++.+... . .+.+++|||+|.++.. .-++ .|+. .+.+
T Consensus 86 ~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~-sr~~-~i~~ 163 (323)
T 1sxj_B 86 IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ-SQCA-ILRY 163 (323)
T ss_dssp HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH-TTSE-EEEC
T ss_pred hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH-hhce-EEee
Confidence 44454443321 2 3789999999997221 1111 2444 6888
Q ss_pred CCCCHHHHHHHHHHh
Q 041769 118 SYCTPFRFKMLASNY 132 (204)
Q Consensus 118 ~~p~~~~~~~i~~~~ 132 (204)
+.|+..+...++...
T Consensus 164 ~~~~~~~~~~~l~~~ 178 (323)
T 1sxj_B 164 SKLSDEDVLKRLLQI 178 (323)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 888888776666543
No 68
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.22 E-value=3e-12 Score=93.80 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=60.2
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHH
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNML 83 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (204)
+++|.+.....+.+.+..+. ..+.+++|+||||||||++|++++...+ +++.++++.+... .....+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHH
Confidence 46788777777766666442 1245699999999999999999999888 8888888765322 133444
Q ss_pred HhcCCCeEEEEecCCccch
Q 041769 84 IATKNKSILVVGDIDYLTL 102 (204)
Q Consensus 84 ~~~~~~~il~iDeid~~~~ 102 (204)
... .+++|+|||++.+..
T Consensus 72 ~~a-~~~~l~lDei~~l~~ 89 (143)
T 3co5_A 72 QKA-EGGVLYVGDIAQYSR 89 (143)
T ss_dssp HHT-TTSEEEEEECTTCCH
T ss_pred HhC-CCCeEEEeChHHCCH
Confidence 443 467999999999843
No 69
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.21 E-value=2.9e-10 Score=93.30 Aligned_cols=89 Identities=13% Similarity=0.218 Sum_probs=60.8
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHH
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMEL 79 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~ 79 (204)
++++|.+.....+.+.+.... ..+.+++|+||||||||++|++++... +.+++.++++.+....-.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 357788877777766655432 224569999999999999999999976 568889998876432111
Q ss_pred HHHHHh-----------------cCCCeEEEEecCCccch
Q 041769 80 RNMLIA-----------------TKNKSILVVGDIDYLTL 102 (204)
Q Consensus 80 ~~~~~~-----------------~~~~~il~iDeid~~~~ 102 (204)
.+.|.. ...+++|||||++.+..
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~ 110 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 110 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH
T ss_pred HHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH
Confidence 111111 01357999999999843
No 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.20 E-value=8.8e-11 Score=98.42 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=82.8
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc-----------CCceEEeecC
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL-----------NFDVYDLELT 71 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~-----------~~~~~~~~~~ 71 (204)
++++|.++..+.+.+.+..+... ..+.+++|+||||||||++++++++.+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 67888888888887766654432 224579999999999999999999988 8888888865
Q ss_pred Ccc-Ch-----------------------HH-HHHHHHhcC-CCeEEEEecCCccc--------hhhhhh----------
Q 041769 72 TFK-EN-----------------------ME-LRNMLIATK-NKSILVVGDIDYLT--------LHILLR---------- 107 (204)
Q Consensus 72 ~~~-~~-----------------------~~-~~~~~~~~~-~~~il~iDeid~~~--------~~a~~r---------- 107 (204)
... .. .. +..++.... .+.+|+|||+|.+. +..+.+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~ 170 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMI 170 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEE
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEE
Confidence 433 11 11 222222222 23399999999862 211111
Q ss_pred --------------ccccceeEecCCCCHHHHHHHHHHhh
Q 041769 108 --------------SSCMDMHIHMSYCTPFRFKMLASNYF 133 (204)
Q Consensus 108 --------------~~R~~~~i~~~~p~~~~~~~i~~~~~ 133 (204)
..||...+.++.++..+...++..++
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 03666689999999988887777654
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.17 E-value=1.2e-10 Score=107.80 Aligned_cols=89 Identities=18% Similarity=0.353 Sum_probs=60.5
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCC---C-ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccC
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAW---K-HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKE 75 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~-~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~ 75 (204)
++++|++..+..+...+.... .|... + .+++|+||||||||++|++|++.+ +.+++.++++.+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~--------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRAR--------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHG--------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred cccCCcHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 356777666666655544321 12111 2 369999999999999999999999 78899999887643
Q ss_pred hH-------------------HHHHHHHhcCCCeEEEEecCCcc
Q 041769 76 NM-------------------ELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 76 ~~-------------------~~~~~~~~~~~~~il~iDeid~~ 100 (204)
.. .+...+.. ..+++|||||++.+
T Consensus 630 ~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l 672 (854)
T 1qvr_A 630 KHAVSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKA 672 (854)
T ss_dssp SGGGGGC--------------CHHHHHHH-CSSEEEEESSGGGS
T ss_pred hhHHHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEeccccc
Confidence 21 11222222 35789999999998
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.16 E-value=1.7e-09 Score=90.57 Aligned_cols=92 Identities=17% Similarity=0.126 Sum_probs=62.8
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----CCceEEeecCCccChH
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----NFDVYDLELTTFKENM 77 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----~~~~~~~~~~~~~~~~ 77 (204)
.++++|.+...+.+...+........ +....++|+||||+|||++++++++.+ +..++.+++.......
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~-------~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTT-------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCC-------CCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH
Confidence 36788888888888777665443211 111269999999999999999999998 5678888865543211
Q ss_pred H--------------------------HHHHHHhcCCCeEEEEecCCcc
Q 041769 78 E--------------------------LRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 78 ~--------------------------~~~~~~~~~~~~il~iDeid~~ 100 (204)
. +...+.....+.+|+|||++.+
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 1 1112222245789999999997
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.16 E-value=3.8e-10 Score=103.14 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=79.4
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc----------CCceEEeec
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL----------NFDVYDLEL 70 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~----------~~~~~~~~~ 70 (204)
.|+.++|.++....+.+.+.. ..+.+++|+||||||||++|+++|+.+ +..++.+++
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 367899998777776554331 224679999999999999999999997 778888777
Q ss_pred CCc-cC--hHHHHHHHHhc--CCCeEEEEecCCcc-------------------c---------hh-hhhhccccceeEe
Q 041769 71 TTF-KE--NMELRNMLIAT--KNKSILVVGDIDYL-------------------T---------LH-ILLRSSCMDMHIH 116 (204)
Q Consensus 71 ~~~-~~--~~~~~~~~~~~--~~~~il~iDeid~~-------------------~---------~~-a~~r~~R~~~~i~ 116 (204)
..- .+ ...+..+|..+ ..+++||||.-... + ++ ++.| ||. .+.
T Consensus 245 g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~ 321 (758)
T 3pxi_A 245 GTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQ 321 (758)
T ss_dssp --------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEE
T ss_pred cccccchHHHHHHHHHHHHHhcCCEEEEEcCchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEE
Confidence 211 11 12445555544 36789999921111 0 11 4555 995 599
Q ss_pred cCCCCHHHHHHHHHHhhCC
Q 041769 117 MSYCTPFRFKMLASNYFGI 135 (204)
Q Consensus 117 ~~~p~~~~~~~i~~~~~~~ 135 (204)
++.|+.+++..|+..+...
T Consensus 322 v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 322 VDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp CCCCCHHHHHHHHHHTTTT
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 9999999999998866543
No 74
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.12 E-value=3.7e-11 Score=92.39 Aligned_cols=94 Identities=20% Similarity=0.282 Sum_probs=59.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCC-CCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccC-
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKA-WKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKE- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~- 75 (204)
+|+++++.+.....+.+.+..+.... ... .+.+++|+||||||||++++++++.+ +.+++.++...+..
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 57888887654444545554443321 111 12679999999999999999999988 56777777654311
Q ss_pred ------hHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 76 ------NMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 76 ------~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
...+...+.......+|+|||++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 97 LKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 0011222233334569999999775
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=1.1e-09 Score=90.88 Aligned_cols=88 Identities=24% Similarity=0.366 Sum_probs=58.2
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC-----ceEEeecCCccC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF-----DVYDLELTTFKE 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~ 75 (204)
+|++++|++.+...+...+ .. | ..+ +++|+||||||||++++++++.+.. .+..++.++..+
T Consensus 23 ~~~~~~g~~~~~~~L~~~i----~~-------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 89 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFV----DE-------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG 89 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHH----HT-------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS
T ss_pred cHHHhcCcHHHHHHHHHHH----hc-------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc
Confidence 4788888876655543332 22 1 112 3999999999999999999998732 366677665444
Q ss_pred hHHHHHHHHhc--------CCCeEEEEecCCccc
Q 041769 76 NMELRNMLIAT--------KNKSILVVGDIDYLT 101 (204)
Q Consensus 76 ~~~~~~~~~~~--------~~~~il~iDeid~~~ 101 (204)
...+++.+... ....+++|||+|.++
T Consensus 90 ~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~ 123 (340)
T 1sxj_C 90 IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT 123 (340)
T ss_dssp HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC
Confidence 44444333211 246899999999874
No 76
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.08 E-value=1.9e-10 Score=95.32 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=35.6
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+|++++|++..+..+... .. . +...+++|+||||||||++|+++++.++.
T Consensus 22 ~f~~i~G~~~~~~~l~~~---~~-~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLT---AV-D---------PGIGGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CGGGSCSCHHHHHHHHHH---HH-C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CchhccChHHHHHHHHHH---hh-C---------CCCceEEEECCCCccHHHHHHHHHHhCcc
Confidence 588999997655432111 11 1 11345999999999999999999999863
No 77
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.06 E-value=1.5e-10 Score=96.70 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=59.9
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc---------CCceEEeecCCc
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL---------NFDVYDLELTTF 73 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~---------~~~~~~~~~~~~ 73 (204)
++++|.+.....+...+..... ...+.+++|+||||||||++++++++.+ +..++.+++...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 5677777766666554432211 1234569999999999999999999998 778888887654
Q ss_pred cCh----------------------HH-HHHHHHh---cCCCeEEEEecCCcc
Q 041769 74 KEN----------------------ME-LRNMLIA---TKNKSILVVGDIDYL 100 (204)
Q Consensus 74 ~~~----------------------~~-~~~~~~~---~~~~~il~iDeid~~ 100 (204)
... .. +..++.. ...+.+|+|||+|.+
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l 142 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFL 142 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhh
Confidence 321 11 1222222 234679999999987
No 78
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=9.5e-10 Score=91.34 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=34.8
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+|++++|++.+...+.+.+. .. + ..+. ++|+||||+||||+++++++.+
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~---~~-------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSD---QP-------R-DLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTT---CT-------T-CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHh---hC-------C-CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 47889998766655533330 11 1 1123 9999999999999999999964
No 79
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.03 E-value=4.3e-10 Score=93.76 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=77.5
Q ss_pred cccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhc------CCceEEeecCCccC
Q 041769 2 FDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYL------NFDVYDLELTTFKE 75 (204)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~------~~~~~~~~~~~~~~ 75 (204)
+++++|.+...+.+.+.+...... ..+..++|+||||+|||++++.+++.+ +..++.+++.....
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 356778877766665544322211 224569999999999999999999988 78888888543211
Q ss_pred ----------------------hHH-HH---HHHHhcCCCeEEEEecCCccc----hh----------------------
Q 041769 76 ----------------------NME-LR---NMLIATKNKSILVVGDIDYLT----LH---------------------- 103 (204)
Q Consensus 76 ----------------------~~~-~~---~~~~~~~~~~il~iDeid~~~----~~---------------------- 103 (204)
... +. ..+.....+.+|+|||++.+. ..
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~ 169 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI 169 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE
Confidence 112 11 222222347899999998861 00
Q ss_pred ------------hhhhccccc-eeEecCCCCHHHHHHHHHHhh
Q 041769 104 ------------ILLRSSCMD-MHIHMSYCTPFRFKMLASNYF 133 (204)
Q Consensus 104 ------------a~~r~~R~~-~~i~~~~p~~~~~~~i~~~~~ 133 (204)
.+. .|+. ..+.++.++..+...++...+
T Consensus 170 ~~~~~~~~~~~~~~~--~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 170 TNDVKFVDLLDPRVK--SSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp ESCGGGGGGCTTHHH--HTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred ECCCChHhhhCHHHh--ccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 111 2443 478888888888777766543
No 80
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.00 E-value=4.2e-10 Score=92.59 Aligned_cols=94 Identities=26% Similarity=0.385 Sum_probs=56.1
Q ss_pred CcccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC----CceEEeecCCccC-
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN----FDVYDLELTTFKE- 75 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~----~~~~~~~~~~~~~- 75 (204)
+|+++.+.......+.+.+..++. ..+-..+.+++||||||||||+++.+++..+. .++..++.+.+..
T Consensus 122 tfd~f~~~~~~~~~~~~~~~~~i~------~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 122 HLSDIDVNNASRMEAFSAILDFVE------QYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CGGGSCCCSHHHHHHHHHHHHHHH------HCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CHhhCcCCChHHHHHHHHHHHHHH------hccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 578887765433444444444433 21111246799999999999999999998664 6777776653210
Q ss_pred ------hHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 76 ------NMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 76 ------~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
...+...+.......+|+|||++..
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 196 VKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1111111222234579999999765
No 81
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.97 E-value=1.8e-08 Score=83.54 Aligned_cols=95 Identities=22% Similarity=0.200 Sum_probs=64.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC------------------------ceEEeecC---CccChHHHHHHHHhcC--
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF------------------------DVYDLELT---TFKENMELRNMLIATK-- 87 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~------------------------~~~~~~~~---~~~~~~~~~~~~~~~~-- 87 (204)
+.+++|+||||+|||++|+++|+.+.. ++..++.. .-.+...+++++....
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~ 103 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEH 103 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhc
Confidence 456999999999999999999998742 35555553 2233455666665542
Q ss_pred ----CCeEEEEecCCccchh---hhhh-------------------------ccccceeEecCCCCHHHHHHHHHHh
Q 041769 88 ----NKSILVVGDIDYLTLH---ILLR-------------------------SSCMDMHIHMSYCTPFRFKMLASNY 132 (204)
Q Consensus 88 ----~~~il~iDeid~~~~~---a~~r-------------------------~~R~~~~i~~~~p~~~~~~~i~~~~ 132 (204)
...|++|||+|.++.. ++++ .+|. ..+.|+.|+..+...++...
T Consensus 104 ~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHH
T ss_pred cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHh
Confidence 4689999999998322 1111 0254 35888888888776655544
No 82
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.93 E-value=5e-09 Score=91.48 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=59.5
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC--ceEEeecCCccChHHH-----------HHHHHhcC-----CCeEEEEecCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF--DVYDLELTTFKENMEL-----------RNMLIATK-----NKSILVVGDID 98 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~--~~~~~~~~~~~~~~~~-----------~~~~~~~~-----~~~il~iDeid 98 (204)
+.+++|+||||||||++|+++++.++. ++..+.... .+..++ ...+.... .++++||||++
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIW 119 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHCCBC----------CBCCTTSGGGCSEEEEESGG
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHh
Confidence 356999999999999999999998854 333333321 111111 11222121 34689999999
Q ss_pred ccchh-------------------------------------------hhhhccccceeEecCCCCH-HHHHHHHHHhh
Q 041769 99 YLTLH-------------------------------------------ILLRSSCMDMHIHMSYCTP-FRFKMLASNYF 133 (204)
Q Consensus 99 ~~~~~-------------------------------------------a~~r~~R~~~~i~~~~p~~-~~~~~i~~~~~ 133 (204)
.++.. +++ +||...+.+++|+. +++..|+..+.
T Consensus 120 r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLl--dRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 120 KAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALY--DRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp GCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHH--TTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred hhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHH--HHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 88111 222 38989999999997 56667766543
No 83
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=8.4e-09 Score=84.67 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=50.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc------CCceEEeecCC-ccChHHHHHHHHhcC------CCeEEEEecCCccc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL------NFDVYDLELTT-FKENMELRNMLIATK------NKSILVVGDIDYLT 101 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~il~iDeid~~~ 101 (204)
...++||||||+|||++++++++.+ ..++..+++++ -.+...+++++..+. ...|++|||+|.++
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT 95 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC
Confidence 3469999999999999999999864 46788888764 344456666666542 35799999999993
No 84
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.86 E-value=3.5e-09 Score=78.04 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=45.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
+..++|+||+|+|||++++++++.+ |.++++++...+... .....+.+|+|||++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCcccc
Confidence 5569999999999999999999988 677888887766543 11235789999999976
No 85
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.80 E-value=7.5e-09 Score=80.02 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=41.9
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
++|..++++||||||||||+++.++|+.+...+....-+. ... .+.......++++||+|..
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----~l~~l~~~kIiiLDEad~~ 115 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----WLEPLTDTKVAMLDDATTT 115 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----GGGGGTTCSSEEEEEECHH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----hhcccCCCCEEEEECCCch
Confidence 4666678999999999999999999999865543321111 000 0122234569999999864
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.78 E-value=6.6e-08 Score=97.73 Aligned_cols=64 Identities=23% Similarity=0.426 Sum_probs=49.4
Q ss_pred CceeEEECCCCCcHHHHH-HHHHHhcCCceEEeecCCccChHHHHHHHHhc-----------------CCCeEEEEecCC
Q 041769 37 KHSYFLYGPPGTGKSSLI-AAMTNYLNFDVYDLELTTFKENMELRNMLIAT-----------------KNKSILVVGDID 98 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~il~iDeid 98 (204)
++++||+||||||||++| ++++...+..+..++++...+...+.+.+... ....|+||||++
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 567999999999999999 55666557788889998887776666665542 124699999977
Q ss_pred cc
Q 041769 99 YL 100 (204)
Q Consensus 99 ~~ 100 (204)
..
T Consensus 1347 mp 1348 (2695)
T 4akg_A 1347 LP 1348 (2695)
T ss_dssp CS
T ss_pred cc
Confidence 65
No 87
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.62 E-value=1.5e-06 Score=73.08 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=48.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCc--eEEeecCCccChHHHHHHHHh-----------------cCCCeEEEEecCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFD--VYDLELTTFKENMELRNMLIA-----------------TKNKSILVVGDID 98 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~il~iDeid 98 (204)
..++++|++||||+.+++++....+.. ++.++++.+.......+.|.. ...++.||+||++
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~ 232 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVG 232 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGG
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChh
Confidence 449999999999999999999887544 899999887544322333321 1356789999999
Q ss_pred ccch
Q 041769 99 YLTL 102 (204)
Q Consensus 99 ~~~~ 102 (204)
.++.
T Consensus 233 ~l~~ 236 (368)
T 3dzd_A 233 ELDQ 236 (368)
T ss_dssp GSCH
T ss_pred hCCH
Confidence 9944
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.61 E-value=1.2e-06 Score=74.01 Aligned_cols=65 Identities=14% Similarity=0.228 Sum_probs=48.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC---CceEEeecCCccChHHHHHHHHh-----------------cCCCeEEEEecC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTTFKENMELRNMLIA-----------------TKNKSILVVGDI 97 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~il~iDei 97 (204)
..++++|++|||||++|+++....+ .+++.++++.+....--.+.|.. ...++.||+||+
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei 240 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI 240 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESG
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcCh
Confidence 4489999999999999999998774 68999999876433222233321 124689999999
Q ss_pred Cccch
Q 041769 98 DYLTL 102 (204)
Q Consensus 98 d~~~~ 102 (204)
+.++.
T Consensus 241 ~~l~~ 245 (387)
T 1ny5_A 241 GELSL 245 (387)
T ss_dssp GGCCH
T ss_pred hhCCH
Confidence 99943
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.59 E-value=8.3e-08 Score=80.85 Aligned_cols=90 Identities=11% Similarity=0.179 Sum_probs=57.2
Q ss_pred ccccCChhHHHHHHHHH-HHHHHhHHHHHHhCC-CCCceeEE--ECCCCCcHHHHHHHHHHhc---------CCceEEee
Q 041769 3 DTLAMDSNMKQMIMDDL-ERFVKRKEFYRNVGK-AWKHSYFL--YGPPGTGKSSLIAAMTNYL---------NFDVYDLE 69 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~g~ll--~Gp~GtGKT~la~~la~~~---------~~~~~~~~ 69 (204)
++++|.+...+.+.+.+ ..... +. ..+..+++ +||||+|||++++.+++.+ +..++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 46777877777776665 43322 10 12446888 9999999999999999887 44567777
Q ss_pred cCCccCh----------------------HH----HHHHHHhcCCCeEEEEecCCcc
Q 041769 70 LTTFKEN----------------------ME----LRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 70 ~~~~~~~----------------------~~----~~~~~~~~~~~~il~iDeid~~ 100 (204)
+...... .. +...+.....+.+|+|||++.+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l 150 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSM 150 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 5322111 11 1122222245789999999986
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.50 E-value=3.4e-07 Score=92.66 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=57.4
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHhcC-CCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATK-NKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~iDeid~~ 100 (204)
..|.++.||+|||||++++++|+.+|.+++.++++.......+.++|..+. .++++++||++.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~ 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRL 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSS
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhc
Confidence 467899999999999999999999999999999998888888888876664 5789999999998
No 91
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.48 E-value=1.9e-07 Score=91.14 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=62.9
Q ss_pred CcccccCChhHHHHHHHHHHHHHHh----------HHHHHH---------------hC---CCCCceeEEECCCCCcHHH
Q 041769 1 TFDTLAMDSNMKQMIMDDLERFVKR----------KEFYRN---------------VG---KAWKHSYFLYGPPGTGKSS 52 (204)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~---------------~~---~~~~~g~ll~Gp~GtGKT~ 52 (204)
+|+++.+.++.|..+++.+...+.. ++.+.. +| .|.++.+++|||||||||+
T Consensus 1018 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~ 1097 (1706)
T 3cmw_A 1018 STGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 1097 (1706)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHH
T ss_pred eeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChHH
Confidence 5899999999999988887776633 122222 21 4444559999999999999
Q ss_pred HHHHHHHhc---CCceEEeecCCcc----------------------ChHHHHHHHHh--cCCCeEEEEecCCcc
Q 041769 53 LIAAMTNYL---NFDVYDLELTTFK----------------------ENMELRNMLIA--TKNKSILVVGDIDYL 100 (204)
Q Consensus 53 la~~la~~~---~~~~~~~~~~~~~----------------------~~~~~~~~~~~--~~~~~il~iDeid~~ 100 (204)
||++++.+. |-+..+++..... +...++.++.. ...++++++|+++.+
T Consensus 1098 la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1098 LTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred HHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 999999866 4455555554421 12334333332 246899999998865
No 92
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.47 E-value=2.2e-08 Score=89.21 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=40.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee----cCCccCh---HHHH-------HHHHhcCCCeEEEEecCCcc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE----LTTFKEN---MELR-------NMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~----~~~~~~~---~~~~-------~~~~~~~~~~il~iDeid~~ 100 (204)
++||+||||||||++|+++++.++...+... ..++... .... ..+. .+.+++++|||+|.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~-~A~~gil~IDEid~l 403 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALV-LADGGIAVIDEIDKM 403 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHH-HHSSSEECCTTTTCC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeE-ecCCCcEEeehhhhC
Confidence 6999999999999999999999987665432 1222110 0000 0001 124689999999998
No 93
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.42 E-value=1.1e-07 Score=78.41 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=42.6
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeec--CC----cc-ChH-HHHHHHHhcCCCeEEEEecCCcc
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL--TT----FK-ENM-ELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~--~~----~~-~~~-~~~~~~~~~~~~~il~iDeid~~ 100 (204)
|++.+..++|+||||+|||+|+..++...|.++.+++. .+ .. ... .+..+........+|+||+++.+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL 194 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNV 194 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTT
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccc
Confidence 44555558999999999999999999876555444444 11 11 111 12222222221129999999987
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.35 E-value=1.3e-06 Score=71.81 Aligned_cols=34 Identities=35% Similarity=0.363 Sum_probs=29.5
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEeecCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTT 72 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~ 72 (204)
.++++||+|+|||++++.+++..+..++.+++..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 5999999999999999999999877777777653
No 95
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.31 E-value=1e-06 Score=70.70 Aligned_cols=29 Identities=28% Similarity=0.658 Sum_probs=25.3
Q ss_pred CCCceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 35 AWKHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 35 ~~~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+...+++||||||||||+++.+||+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44568999999999999999999997654
No 96
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.30 E-value=1.1e-06 Score=74.12 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=46.1
Q ss_pred hCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHhcCCCeEEEEecCCcc
Q 041769 32 VGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 32 ~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid~~ 100 (204)
++++.+..++++||||+||||+++++++.++..++.+.... ....-.+....+..++++||++..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHH
Confidence 36677778999999999999999999999877665543322 111112344455667789998865
No 97
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=9.8e-07 Score=67.46 Aligned_cols=33 Identities=36% Similarity=0.463 Sum_probs=28.9
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+..++|.||||+||||+++.|++.++..++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 345899999999999999999999998887654
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.19 E-value=5.1e-06 Score=68.02 Aligned_cols=51 Identities=22% Similarity=0.192 Sum_probs=35.8
Q ss_pred ccccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeec
Q 041769 3 DTLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL 70 (204)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~ 70 (204)
+.++|.+.....+.+.+.. +..++++||+|+|||++++.+++..+ ++.+++
T Consensus 12 ~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~ 62 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDC 62 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred HhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence 3566666555555443321 14599999999999999999999876 555554
No 99
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.18 E-value=1.7e-06 Score=64.45 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=28.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEeec
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL 70 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~ 70 (204)
.-++|.|+||+||||+++.|+..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 448899999999999999999999988776543
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.18 E-value=2.6e-06 Score=64.36 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=22.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
+.|.||||+|||||++.|++.++..
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999988643
No 101
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.16 E-value=2.2e-06 Score=63.30 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=26.9
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
++|.|+||+||||+++.|++.++..++..+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 789999999999999999999998876654
No 102
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.15 E-value=1.3e-06 Score=65.62 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=29.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+..++|+||||+||||+++.|++.+|.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 345899999999999999999999999887754
No 103
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.13 E-value=1.5e-06 Score=65.49 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=28.9
Q ss_pred CCceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 36 WKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 36 ~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
.+.-++|.|+||+||||+++.|+..++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 3455889999999999999999999998776643
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.10 E-value=6.7e-06 Score=84.25 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=55.9
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHhcC-CCeEEEEecCCcc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIATK-NKSILVVGDIDYL 100 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~iDeid~~ 100 (204)
..|..+.||+|||||.+++.+|+.+|..++.++++.-.....+.++|..+. .++..+|||++.+
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl 668 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRL 668 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSS
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcC
Confidence 456779999999999999999999999999999998777777777776664 6788999999998
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.06 E-value=5.9e-06 Score=81.76 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=48.2
Q ss_pred CCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCcc---------------------ChHHHHHHHHhc---
Q 041769 34 KAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFK---------------------ENMELRNMLIAT--- 86 (204)
Q Consensus 34 ~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~---------------------~~~~~~~~~~~~--- 86 (204)
++.+.+++|+||||||||+||.+++.+. |..+.++++.+.. ......+.+...
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 7778889999999999999999998775 6677777766431 111222333333
Q ss_pred CCCeEEEEecCCcc
Q 041769 87 KNKSILVVGDIDYL 100 (204)
Q Consensus 87 ~~~~il~iDeid~~ 100 (204)
..+.+|+||+++.+
T Consensus 1504 ~~~~lVVIDsi~al 1517 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAAL 1517 (2050)
T ss_dssp TCCSEEEESCGGGC
T ss_pred CCCCEEEEcChhHh
Confidence 57899999999744
No 106
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.05 E-value=2.5e-06 Score=64.29 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=28.9
Q ss_pred CCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeec
Q 041769 34 KAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL 70 (204)
Q Consensus 34 ~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~ 70 (204)
+..+.-+.|.||||+||||+++.|++.++...+.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 3444558899999999999999999987666555543
No 107
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.05 E-value=2.3e-06 Score=63.45 Aligned_cols=30 Identities=40% Similarity=0.753 Sum_probs=26.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
..+.|.||||+||||+++.|++.++..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 348899999999999999999999876654
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.05 E-value=2e-05 Score=80.79 Aligned_cols=64 Identities=19% Similarity=0.375 Sum_probs=47.0
Q ss_pred CceeEEECCCCCcHHHHHHHHHH-hcCCceEEeecCCccChHHHHHHHHhc------------------CCCeEEEEecC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTN-YLNFDVYDLELTTFKENMELRNMLIAT------------------KNKSILVVGDI 97 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~il~iDei 97 (204)
+.++||+||||||||.++..... ..+..++.++++...+...+...+... ....|+||||+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 45699999999999987755444 446678889998887777776666521 12358999999
Q ss_pred Ccc
Q 041769 98 DYL 100 (204)
Q Consensus 98 d~~ 100 (204)
+..
T Consensus 1384 Nmp 1386 (3245)
T 3vkg_A 1384 NLP 1386 (3245)
T ss_dssp TCC
T ss_pred CCC
Confidence 865
No 109
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.04 E-value=2.5e-06 Score=63.66 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=27.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
.++|.|+||+||||+++.||+.++.+++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 3889999999999999999999998876643
No 110
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.02 E-value=4e-06 Score=64.52 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=40.0
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh--------cC-CceEEeecCCccC---------------------hHHHHHHHH-hc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY--------LN-FDVYDLELTTFKE---------------------NMELRNMLI-AT 86 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~--------~~-~~~~~~~~~~~~~---------------------~~~~~~~~~-~~ 86 (204)
..++++|+||||||+++..++.. .| .+++..++.++.. ...+...+. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 34789999999999998886433 24 6666666554321 012222110 12
Q ss_pred CCCeEEEEecCCcc
Q 041769 87 KNKSILVVGDIDYL 100 (204)
Q Consensus 87 ~~~~il~iDeid~~ 100 (204)
..+++|+|||++.+
T Consensus 86 ~~~~vliIDEAq~l 99 (199)
T 2r2a_A 86 NIGSIVIVDEAQDV 99 (199)
T ss_dssp GTTCEEEETTGGGT
T ss_pred cCceEEEEEChhhh
Confidence 34889999999986
No 111
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.02 E-value=3.5e-06 Score=63.06 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=28.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
..++|+|+||+||||+++.|+..++..++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 45899999999999999999999998777653
No 112
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.01 E-value=3e-06 Score=63.59 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=27.5
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
++|.|+||+||||+++.|++.+|.+++..+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 889999999999999999999998887654
No 113
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.01 E-value=3.7e-06 Score=63.43 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=28.0
Q ss_pred CceeEEECCCCCcHHHHHHHHHHh-cCCceEEee
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNY-LNFDVYDLE 69 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~-~~~~~~~~~ 69 (204)
+..++|+|+|||||||+++.|+.. +|.+++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 345999999999999999999999 687776644
No 114
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.00 E-value=4e-06 Score=66.71 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=27.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeec
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL 70 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~ 70 (204)
+++.|||||||||+++.||+.++..++..|.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 7899999999999999999999988876643
No 115
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.00 E-value=1.1e-05 Score=65.39 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=28.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEeecC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELT 71 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~ 71 (204)
+.-++|.||||+||||+++.|+..++..++.++..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D 67 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND 67 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Confidence 34588999999999999999999885555666543
No 116
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.97 E-value=4e-06 Score=61.76 Aligned_cols=28 Identities=25% Similarity=0.403 Sum_probs=25.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
++|.||||+||||+++.| ..+|.+++.+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 789999999999999999 8889887664
No 117
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.97 E-value=4.3e-06 Score=61.90 Aligned_cols=31 Identities=35% Similarity=0.478 Sum_probs=28.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
.++|.|+|||||||+++.|+..+|.+++..+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4899999999999999999999999887754
No 118
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.95 E-value=5.2e-06 Score=63.36 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=27.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
.-++|.|+||+||||+++.|++.+|..++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 34899999999999999999999987766543
No 119
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.94 E-value=4.7e-06 Score=61.71 Aligned_cols=31 Identities=19% Similarity=0.476 Sum_probs=27.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
-++|.|+||+||||+++.|+..+|.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 3889999999999999999999998876643
No 120
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.93 E-value=6.6e-06 Score=62.70 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=27.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
-++|.|+||+||||+++.|+..++.+++..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 488999999999999999999999887665
No 121
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.92 E-value=7.6e-06 Score=60.86 Aligned_cols=31 Identities=32% Similarity=0.529 Sum_probs=26.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-++|.||||+||||+++.|++.+|..++..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 3488999999999999999999988766553
No 122
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.91 E-value=1.4e-05 Score=59.14 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=26.2
Q ss_pred HHHHhCCCCCc--eeEEECCCCCcHHHHHHHHHHhc
Q 041769 28 FYRNVGKAWKH--SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 28 ~~~~~~~~~~~--g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
....+.+..+. -+.|.||+|+|||||+++|++.+
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34444444344 48899999999999999999987
No 123
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.91 E-value=6.3e-06 Score=63.48 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=26.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
++|.||||+||||+++.|++.+|..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998877765
No 124
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.90 E-value=6.6e-06 Score=61.89 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=27.0
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-++|.|+|||||||+++.|+..++.+++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 3488999999999999999999999876653
No 125
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.90 E-value=5.1e-06 Score=62.31 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=26.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
-++|.|+||+||||+++.|++.+|..++..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 488999999999999999999998776554
No 126
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.89 E-value=7.1e-06 Score=60.50 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=26.9
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
++|.|+||+||||+++.|+..++.+++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 789999999999999999999998877643
No 127
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.89 E-value=7.7e-06 Score=61.72 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=27.7
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
+.-++|.|+||+||||+++.|++.++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 34589999999999999999999999877654
No 128
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.89 E-value=1.2e-05 Score=71.74 Aligned_cols=27 Identities=44% Similarity=0.607 Sum_probs=24.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
..++|+||||||||+++++|++.++..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 469999999999999999999998543
No 129
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.89 E-value=6.9e-06 Score=63.21 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=26.3
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
++|.||||+||||+++.|++.+|..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999999877765
No 130
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.88 E-value=1.1e-05 Score=61.51 Aligned_cols=31 Identities=13% Similarity=0.378 Sum_probs=26.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
+.-+.|.||||+||||+++.|++.+|..++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 3448899999999999999999999765554
No 131
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.87 E-value=8.8e-05 Score=58.01 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=79.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccCh--------------------------HHHHHHHHhcCCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKEN--------------------------MELRNMLIATKNK 89 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~ 89 (204)
.+++.|+||+||||++-.+|..+ |..++.++....... ..+..++. ..+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~--~~p 85 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK--AAP 85 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH--HCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh--cCC
Confidence 48999999999999988888876 777776665431110 12333332 257
Q ss_pred eEEEEecCCccchh-----------hhhhccccceeEecCCCCHHHHHHHHHHhhCCC-CCCcHHHHHHHhh---hCCCC
Q 041769 90 SILVVGDIDYLTLH-----------ILLRSSCMDMHIHMSYCTPFRFKMLASNYFGIT-EHPLLTEIDELIE---KANVT 154 (204)
Q Consensus 90 ~il~iDeid~~~~~-----------a~~r~~R~~~~i~~~~p~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~---~~~l~ 154 (204)
.++++||+-..... ....+..+|..........+....+..+..+.. .+.+.+.+-+.++ ...++
T Consensus 86 dlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~lvD~~ 165 (228)
T 2r8r_A 86 SLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVLIDLP 165 (228)
T ss_dssp SEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEEBCCC
T ss_pred CEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEEecCC
Confidence 89999998865211 112233567777776666666666666666655 3444556655554 35678
Q ss_pred HHHHHHHHhc
Q 041769 155 LADVVEQLMR 164 (204)
Q Consensus 155 ~~~i~~~~~~ 164 (204)
|.++.+.+..
T Consensus 166 p~~l~~rl~~ 175 (228)
T 2r8r_A 166 PRELLERLRD 175 (228)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 9998887754
No 132
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.86 E-value=8.9e-06 Score=64.55 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=30.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTF 73 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~ 73 (204)
+..++|.|+||+||||+++.|++.++..++.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4458999999999999999999999866666665543
No 133
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.86 E-value=5.6e-06 Score=61.56 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=24.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHH-hcCCceEE
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTN-YLNFDVYD 67 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~-~~~~~~~~ 67 (204)
.-++|.|+||+||||+++.|++ .++..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 3488999999999999999999 56654443
No 134
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.86 E-value=7.9e-06 Score=63.24 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=27.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-++|.|+||+||||+++.|+..++..++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3488999999999999999999999877764
No 135
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.85 E-value=3.9e-05 Score=58.79 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=32.4
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTT 72 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~ 72 (204)
|++.+.-++++||||+|||+++..++...+..+++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4666666899999999999999999986677777777654
No 136
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.85 E-value=4.2e-05 Score=63.70 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=44.3
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccC---------------------hHHHHHHHHh---
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKE---------------------NMELRNMLIA--- 85 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~---------------------~~~~~~~~~~--- 85 (204)
|++.+.-++++||||+|||+|+..++..+ +..+.+++...... ...+.+++..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 34445558999999999999999988765 55666666543111 1122222221
Q ss_pred cCCCeEEEEecCCcc
Q 041769 86 TKNKSILVVGDIDYL 100 (204)
Q Consensus 86 ~~~~~il~iDeid~~ 100 (204)
...+.+|+||++..+
T Consensus 137 ~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 137 SGALDIIVIDSVAAL 151 (349)
T ss_dssp TTCCSEEEEECGGGC
T ss_pred cCCCCEEEEcChHhh
Confidence 235789999998876
No 137
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.84 E-value=8.9e-06 Score=61.50 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=27.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-++|.|+||+||||+++.|++.++..++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4589999999999999999999999776653
No 138
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.84 E-value=5.6e-06 Score=65.91 Aligned_cols=32 Identities=28% Similarity=0.556 Sum_probs=28.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
..+.|.|++|+||||+++.|++.+|.+++..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 34999999999999999999999998877644
No 139
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.84 E-value=1.1e-05 Score=60.60 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=27.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-++|.|+||+||||+++.|+..++..++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4588999999999999999999999777654
No 140
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.84 E-value=1.1e-05 Score=62.49 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=27.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-++|.|+||+||||+++.|+..++..++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 3488999999999999999999999876654
No 141
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.84 E-value=9.1e-06 Score=63.22 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=27.7
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
+.-++|.|+||+||||+++.|+..++..++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 34589999999999999999999998877654
No 142
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.84 E-value=8.5e-06 Score=61.75 Aligned_cols=62 Identities=10% Similarity=0.144 Sum_probs=36.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC--------ccC----------hHHHHHHHHhcC-CCeEEEEec
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT--------FKE----------NMELRNMLIATK-NKSILVVGD 96 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~--------~~~----------~~~~~~~~~~~~-~~~il~iDe 96 (204)
-++++||+|+||||++..++..+ +..++.+.... +.. ......++.... ...+|+|||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviIDE 84 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDE 84 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEEC
Confidence 37899999999999986665543 55555443220 000 011122222222 467999999
Q ss_pred CCcc
Q 041769 97 IDYL 100 (204)
Q Consensus 97 id~~ 100 (204)
++.+
T Consensus 85 ~Q~~ 88 (184)
T 2orw_A 85 VQFF 88 (184)
T ss_dssp GGGS
T ss_pred cccC
Confidence 9987
No 143
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.83 E-value=9.8e-06 Score=60.78 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=25.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC-----CceEE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN-----FDVYD 67 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~-----~~~~~ 67 (204)
-++|.|+||+||||+++.|+..++ .+++.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 488999999999999999999887 55555
No 144
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.81 E-value=1e-05 Score=60.41 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=22.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceE
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVY 66 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~ 66 (204)
.-++|.|+||+||||+++.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 34889999999999999999999998876
No 145
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.81 E-value=5.3e-05 Score=63.30 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=45.4
Q ss_pred CCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCcc---------------------ChHHHHHHHHh---c
Q 041769 34 KAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFK---------------------ENMELRNMLIA---T 86 (204)
Q Consensus 34 ~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~---------------------~~~~~~~~~~~---~ 86 (204)
++.+.-++++|+||+|||+|+..++..+ +..+++++..... ....+.+++.. .
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 5555669999999999999999988765 5677777763311 11222233322 2
Q ss_pred CCCeEEEEecCCcc
Q 041769 87 KNKSILVVGDIDYL 100 (204)
Q Consensus 87 ~~~~il~iDeid~~ 100 (204)
....+|+||.+..+
T Consensus 140 ~~~~lVVIDsl~~l 153 (356)
T 1u94_A 140 GAVDVIVVDSVAAL 153 (356)
T ss_dssp TCCSEEEEECGGGC
T ss_pred cCCCEEEEcCHHHh
Confidence 45678999998876
No 146
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.80 E-value=1.4e-05 Score=60.81 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=27.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
-++|.|+||+||||+++.|++.+|..++..+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 4889999999999999999999988766643
No 147
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.79 E-value=2.5e-05 Score=59.53 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=27.4
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
+.-+.|.||||+||||++++|++.+ |...+.++..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 4448899999999999999999998 5544455543
No 148
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.79 E-value=7.1e-05 Score=62.50 Aligned_cols=39 Identities=10% Similarity=0.029 Sum_probs=30.4
Q ss_pred CCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC
Q 041769 34 KAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT 72 (204)
Q Consensus 34 ~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~ 72 (204)
++.+.-++++||||+|||+|+..++..+ +..+++++...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4444558999999999999999999875 55677776543
No 149
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.79 E-value=1.7e-05 Score=61.73 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=28.1
Q ss_pred CCCCceeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 34 KAWKHSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 34 ~~~~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
...++-++|.||||+||+|.++.|++.+|...++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 3445568889999999999999999999876554
No 150
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.78 E-value=2.5e-05 Score=58.34 Aligned_cols=33 Identities=30% Similarity=0.580 Sum_probs=28.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeec
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLEL 70 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~ 70 (204)
.-+.|.|++|+||||+++.|+..+ |.+++.++.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 347899999999999999999988 888887663
No 151
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.78 E-value=2.2e-05 Score=58.98 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=27.5
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEeec
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLEL 70 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~ 70 (204)
+.|.|+||+||||+++.|++.+ |.+++..+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 7899999999999999999988 888877653
No 152
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.78 E-value=4.6e-05 Score=58.72 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=24.3
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
|++.+.-+.|+||||+|||||++.++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555558999999999999999999854
No 153
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.77 E-value=1.6e-05 Score=62.10 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=27.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
..++|.|+||+||||+++.|+..++..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3489999999999999999999999776664
No 154
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.77 E-value=1.8e-05 Score=61.23 Aligned_cols=29 Identities=34% Similarity=0.613 Sum_probs=25.5
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
-+.|.||||+||||+++.|++.+|.+++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 48899999999999999999998866554
No 155
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.76 E-value=1e-05 Score=62.60 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=26.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
.-++|.||||+||||+++.|+..++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 448999999999999999999999876544
No 156
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.76 E-value=1.3e-05 Score=61.13 Aligned_cols=29 Identities=31% Similarity=0.348 Sum_probs=25.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+.+.|++|+||||+++.|++ +|.+++..+
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 78999999999999999999 887776643
No 157
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.76 E-value=1.9e-05 Score=60.92 Aligned_cols=90 Identities=12% Similarity=0.180 Sum_probs=53.9
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeecCCc------------------------cChHHHHHHHHh-cCCCeEEEE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTF------------------------KENMELRNMLIA-TKNKSILVV 94 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~-~~~~~il~i 94 (204)
++|.||||+||+|.++.|++.+|.+.++ ..++ ....-+.+++.. ......+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is--tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~il 80 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS--TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIF 80 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc--HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEe
Confidence 7889999999999999999999876654 2222 011112222222 233345778
Q ss_pred ecCCcc-----chhhhhh-cc-ccceeEecCCCCHHHHHHHHHH
Q 041769 95 GDIDYL-----TLHILLR-SS-CMDMHIHMSYCTPFRFKMLASN 131 (204)
Q Consensus 95 Deid~~-----~~~a~~r-~~-R~~~~i~~~~p~~~~~~~i~~~ 131 (204)
|.+-.- .+...+. .+ ..+..+.+..|.....+.+..+
T Consensus 81 DGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R 124 (206)
T 3sr0_A 81 DGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGR 124 (206)
T ss_dssp ESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred cCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCC
Confidence 888654 2222222 22 4667777777777666655544
No 158
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.76 E-value=1.7e-05 Score=62.58 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=27.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
+.-++|.||||+||||+++.|++.++...+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 44589999999999999999999998777654
No 159
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.75 E-value=1.4e-05 Score=61.63 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=26.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
++|.|+||+||||+++.|+..+|..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999877665
No 160
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.74 E-value=5.8e-05 Score=58.67 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=30.3
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHh--c-------CCceEEeecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNY--L-------NFDVYDLELTT 72 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~--~-------~~~~~~~~~~~ 72 (204)
|++.+.-++|+||||+|||++++.++.. . +..+++++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4555666899999999999999999994 3 34566665544
No 161
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.73 E-value=2.3e-05 Score=64.52 Aligned_cols=32 Identities=28% Similarity=0.591 Sum_probs=28.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
..++++||+|+|||++++.||+.++..++.+|
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 45899999999999999999999998777765
No 162
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.72 E-value=1.7e-05 Score=60.57 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=25.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
-+.|.||+|+||||+++.|++ +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 378999999999999999998 88777653
No 163
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.72 E-value=2.2e-05 Score=59.39 Aligned_cols=28 Identities=25% Similarity=0.685 Sum_probs=25.1
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
+.|.|+||+||||+++.|++.++..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 7899999999999999999999876554
No 164
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.72 E-value=1.8e-05 Score=61.37 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=22.0
Q ss_pred HHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhc
Q 041769 27 EFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 27 ~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~ 61 (204)
..+.++.+..+.| +.|+||+|+||||+++.|++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455555555444 8899999999999999999987
No 165
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.71 E-value=0.00011 Score=61.66 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=45.5
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCcc---------------------ChHHHHHHHHh---
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFK---------------------ENMELRNMLIA--- 85 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~---------------------~~~~~~~~~~~--- 85 (204)
|++.+.-++++||||+|||+|+..++..+ +.++++++...-. ....+.+.+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 35555568999999999999999888765 5677777754321 11222222222
Q ss_pred cCCCeEEEEecCCcc
Q 041769 86 TKNKSILVVGDIDYL 100 (204)
Q Consensus 86 ~~~~~il~iDeid~~ 100 (204)
.....+|+||.+..+
T Consensus 150 ~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 150 SGAIDVVVVDSVAAL 164 (366)
T ss_dssp TTCCSEEEEECTTTC
T ss_pred cCCCCEEEEeChHHh
Confidence 235779999999876
No 166
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.70 E-value=2.7e-05 Score=60.55 Aligned_cols=29 Identities=17% Similarity=0.426 Sum_probs=25.8
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
++|.|+||+||||+++.|+..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999998766554
No 167
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.68 E-value=3.7e-05 Score=57.95 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=26.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEeec
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLEL 70 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~ 70 (204)
+.|.|++|+||||+++.|++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6799999999999999999999 888876543
No 168
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.66 E-value=4.7e-05 Score=58.63 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=29.8
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
|++.+..++++||||+|||+|++.++..+ +..++.++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 45555568999999999999999999765 4566665543
No 169
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.66 E-value=3.5e-05 Score=60.68 Aligned_cols=30 Identities=20% Similarity=0.486 Sum_probs=25.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceE
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVY 66 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~ 66 (204)
+.-+.|.||||+||||+++.|++.+|....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 345889999999999999999988876543
No 170
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.65 E-value=1.8e-05 Score=59.36 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=24.8
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC---CceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN---FDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~ 69 (204)
++|.|+||+||||+++.|++.++ .++..++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 78999999999999999999886 2344444
No 171
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.65 E-value=2.9e-05 Score=63.41 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.-+.|.||+|+||||+++.||+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 348899999999999999999976
No 172
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.65 E-value=2.7e-05 Score=59.41 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=26.8
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+.|.|++||||||+++.|+..+|.+++..|
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 789999999999999999999898877643
No 173
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.64 E-value=4.2e-05 Score=60.88 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=27.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh---cCCceEEeec
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY---LNFDVYDLEL 70 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~---~~~~~~~~~~ 70 (204)
.-++|.|+||+||||+++.|+.. .|..++.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 34889999999999999999998 6777775543
No 174
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.64 E-value=3.7e-05 Score=57.66 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=22.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.-+.|.||||+||||+++.|++.++
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3488999999999999999999764
No 175
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.64 E-value=2.8e-05 Score=61.29 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=24.1
Q ss_pred HHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 28 FYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 28 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.+.++.+..+.| +.|.||+|+||||+++.|++.+|..
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 445555554444 7899999999999999999988753
No 176
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.63 E-value=4.1e-05 Score=57.60 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.5
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+.|.||||+||||+++.|++..+.
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEECCCCCcHHHHHHHHhcccCC
Confidence 789999999999999999987654
No 177
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.63 E-value=3e-05 Score=58.93 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=27.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
-+.+.|++|+||||+++.|++.+|.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 4789999999999999999999998776643
No 178
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.63 E-value=4.4e-05 Score=57.90 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=27.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc-CCceEEeec
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL-NFDVYDLEL 70 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~-~~~~~~~~~ 70 (204)
.-+.|.|++|+||||+++.|++.+ |.+++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 348899999999999999999998 576766543
No 179
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.61 E-value=4.3e-05 Score=58.01 Aligned_cols=25 Identities=32% Similarity=0.658 Sum_probs=22.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.-+.|.||+|+||||+++.|++.++
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999999864
No 180
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.60 E-value=3.7e-05 Score=58.39 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.4
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.-+.|.||||+||||+++.|++.+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4458899999999999999999987
No 181
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.60 E-value=5e-05 Score=58.34 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.-+.|.||+|+||||+++.|++.++.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 34889999999999999999998754
No 182
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.59 E-value=6.1e-05 Score=59.69 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=25.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
.-+.|.||+|+||||+++.|++.+|..++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 348899999999999999999988876543
No 183
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.59 E-value=5.4e-05 Score=59.58 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=26.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
.-+.+.||||+||||+++.|++.+|..++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999876654
No 184
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.58 E-value=5e-05 Score=58.05 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.0
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+.-++|.||||+||||+++.|+..++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34488999999999999999999885
No 185
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.58 E-value=4e-05 Score=58.36 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=23.5
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
-++|.|+||+||||+++.|++.++..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 48899999999999999999998763
No 186
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.58 E-value=0.0002 Score=55.90 Aligned_cols=62 Identities=13% Similarity=0.318 Sum_probs=40.3
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC-------cc-------------ChHHHHHHHHhc---CCCeEEE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT-------FK-------------ENMELRNMLIAT---KNKSILV 93 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~-------~~-------------~~~~~~~~~~~~---~~~~il~ 93 (204)
++++||+|+||||++..++..+ |..++.++... +. ...++.+.+... ..+.+|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 6788999999999888877766 56666663221 10 012333333332 2467999
Q ss_pred EecCCccc
Q 041769 94 VGDIDYLT 101 (204)
Q Consensus 94 iDeid~~~ 101 (204)
|||++.++
T Consensus 95 IDEaQ~l~ 102 (223)
T 2b8t_A 95 IDEVQFFD 102 (223)
T ss_dssp ECSGGGSC
T ss_pred EecCccCc
Confidence 99999874
No 187
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.58 E-value=5.4e-05 Score=57.90 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=24.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-+.+.||+|+||||+++.|++.++..+..+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 3478999999999999999999887333333
No 188
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.57 E-value=4.5e-05 Score=57.75 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=26.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
.-+.|.|++|+||||+++.|++. |.+++..+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 34889999999999999999998 87776543
No 189
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.56 E-value=4e-05 Score=58.56 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=24.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc-CCceEE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL-NFDVYD 67 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~-~~~~~~ 67 (204)
-+.+.|+||+||||+++.|++.+ +..++.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 37899999999999999999987 554444
No 190
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.56 E-value=0.00013 Score=59.89 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---------CCceEEeecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---------NFDVYDLELTT 72 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---------~~~~~~~~~~~ 72 (204)
|++.+.-++++||||+|||+++..++... +..+++++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45555568999999999999999999875 45677777654
No 191
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.56 E-value=4.7e-05 Score=57.39 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
-+.|.||+|+||||+++.|++.++
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 378999999999999999998874
No 192
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.55 E-value=3.8e-05 Score=59.97 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=27.4
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHH--Hh--cCCceEEeec
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMT--NY--LNFDVYDLEL 70 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la--~~--~~~~~~~~~~ 70 (204)
|++.+.-+.|.||||+|||||++.++ .. .+...+.++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 45555668999999999999999998 43 2444444443
No 193
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.55 E-value=6.1e-05 Score=57.75 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=26.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC---CceEEeec
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLEL 70 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~~ 70 (204)
+.-+.+.||||+|||||++.|++.+. .....+..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~ 58 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM 58 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEec
Confidence 33488999999999999999999885 33444443
No 194
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.55 E-value=2.1e-05 Score=65.51 Aligned_cols=29 Identities=28% Similarity=0.498 Sum_probs=26.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
.++|+|+||+||||++++||+.++.+++.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 48999999999999999999999877644
No 195
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.54 E-value=4.3e-05 Score=58.30 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.-+.|+||+|+||||+++.|++.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4489999999999999999998763
No 196
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.54 E-value=0.00013 Score=72.36 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=50.4
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccCh------------------------HHHHHHHHh
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKEN------------------------MELRNMLIA 85 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~------------------------~~~~~~~~~ 85 (204)
+++.+..++++||||||||+|+.+++.+. |.++.++++...... ..+...+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46677779999999999999999988765 778888877654211 122233334
Q ss_pred cCCCeEEEEecCCcc
Q 041769 86 TKNKSILVVGDIDYL 100 (204)
Q Consensus 86 ~~~~~il~iDeid~~ 100 (204)
...+.+|+||++..+
T Consensus 1157 ~~~~dlvVIDsl~~L 1171 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAAL 1171 (2050)
T ss_dssp HTCCSEEEESCGGGC
T ss_pred hCCCCEEEECCcccc
Confidence 467899999999887
No 197
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.53 E-value=5.7e-05 Score=57.88 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCCceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 35 AWKHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 35 ~~~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
..+.-+.|.||+|+||||++++|++.+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3344488999999999999999999875
No 198
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.53 E-value=0.0001 Score=62.69 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=37.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEeecCCccChHHHHHHHHh-cCCCeEEEEecCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTTFKENMELRNMLIA-TKNKSILVVGDID 98 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~iDeid 98 (204)
.-++++|+||+||||+++.|++.++..++ +...+..-..+...+.. ...+..+++|...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i--~~D~~~~~~~~~~~~~~~l~~g~~vIiD~~~ 318 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHV--NRDTLGSWQRCVSSCQAALRQGKRVVIDNTN 318 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEEC--CGGGSCSHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEE--ccchHHHHHHHHHHHHHHHhcCCcEEEeCCC
Confidence 34889999999999999999999876544 44444333223222222 2234456677654
No 199
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.53 E-value=6.3e-05 Score=62.88 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.-+.|+||+|+||||+++.||+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Confidence 348899999999999999999976
No 200
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.52 E-value=5.4e-05 Score=62.66 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=27.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
-++|.||+|+|||+++..||+.++..++..|
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~D 72 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSD 72 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEccc
Confidence 4889999999999999999999987776654
No 201
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.52 E-value=7.7e-05 Score=58.94 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=24.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.-+.+.|++|+||||+++.|+..+|.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 348899999999999999999999876
No 202
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.52 E-value=6.7e-05 Score=61.35 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=27.9
Q ss_pred HHHHHhCC--CCCceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 27 EFYRNVGK--AWKHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 27 ~~~~~~~~--~~~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
..+..+.+ +.+..+.|+||+|+|||||+++|++.+.
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 34555454 4444589999999999999999999873
No 203
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.51 E-value=3.2e-05 Score=59.06 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.-++|.|+||+||||+++.|++.++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34889999999999999999998754
No 204
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.51 E-value=8.6e-05 Score=56.38 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.++|+||+|+||||+++.|....+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 4899999999999999999988754
No 205
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.50 E-value=0.00025 Score=58.72 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=31.0
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---------CCceEEeecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---------NFDVYDLELTT 72 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---------~~~~~~~~~~~ 72 (204)
|++.+.-++++||||+|||+|+..++... +..+++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45555558999999999999999999863 45677776654
No 206
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.50 E-value=0.00077 Score=59.37 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=19.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHH
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~ 59 (204)
+-+.++||+|+|||++|..+++
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEcCCCCCHHHHHHHHHh
Confidence 4588999999999999999864
No 207
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.49 E-value=9.6e-05 Score=62.22 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
-+.|.||+|+|||||+++|++.....-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p~~ 57 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETITS 57 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCC
Confidence 378999999999999999999775543
No 208
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.49 E-value=5.8e-05 Score=58.11 Aligned_cols=30 Identities=33% Similarity=0.445 Sum_probs=25.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-+.|.|++|+||||+++.|+. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 3488999999999999999998 88776664
No 209
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.49 E-value=0.00012 Score=54.84 Aligned_cols=32 Identities=28% Similarity=0.582 Sum_probs=25.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC---CceEEee
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLE 69 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~ 69 (204)
.-++|.|+||+||||+++.|+..++ ..+..++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 3488999999999999999999874 4455554
No 210
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.49 E-value=8.9e-05 Score=59.25 Aligned_cols=30 Identities=37% Similarity=0.592 Sum_probs=24.1
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.+..+.-+++.||+|+||||+++++++.+.
T Consensus 21 ~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 21 CHRKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp GGCSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred hhCCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 333344488999999999999999999763
No 211
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.48 E-value=7.8e-05 Score=61.03 Aligned_cols=33 Identities=24% Similarity=0.576 Sum_probs=28.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+.-+++.||+|+|||+++..||+.++..+++.|
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecc
Confidence 345889999999999999999999987776654
No 212
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.47 E-value=0.00019 Score=59.70 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=24.4
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
|++.+.-+.|+||||+|||+|++.++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444558999999999999999999987
No 213
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.47 E-value=7.6e-05 Score=58.68 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=25.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
+.-+.+.||+|+|||||+++|++.....--.+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I 62 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV 62 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCceEE
Confidence 33488999999999999999999876654443
No 214
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.47 E-value=0.00011 Score=57.23 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=30.3
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT 72 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~ 72 (204)
|++.+.-++++||||+|||+++..++... +..+++++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 45556668999999999999988777654 56777776543
No 215
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.47 E-value=7e-05 Score=57.49 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=26.4
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
+.+++|.||+|+|||+++..|++..+ .++..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 45699999999999999999999876 555433
No 216
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.46 E-value=0.0001 Score=65.33 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=26.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeec
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLEL 70 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~ 70 (204)
..+++.||||||||+++.+++..+ +.++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 448899999999999999998865 666665543
No 217
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.45 E-value=7.2e-05 Score=62.02 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=26.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
-+++.||+|+|||++++.||..++..++..|
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 4889999999999999999999986555543
No 218
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.45 E-value=9e-05 Score=57.67 Aligned_cols=26 Identities=38% Similarity=0.554 Sum_probs=23.0
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+.-+.|.||+|+|||||+++|++...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34488999999999999999999875
No 219
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.00017 Score=60.33 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
-+.|.||+|+|||||+++|++.....-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~ 57 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKPTS 57 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCc
Confidence 378999999999999999999765443
No 220
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.44 E-value=0.0004 Score=56.47 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=28.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc----CCceEEeecCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL----NFDVYDLELTT 72 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~----~~~~~~~~~~~ 72 (204)
+.-++|+||+|+||||++..||..+ |..+..++...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 3448899999999999999999766 55676666543
No 221
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.43 E-value=0.0015 Score=61.89 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=36.5
Q ss_pred cccCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHHh-------cCCceEEeecCC
Q 041769 4 TLAMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTNY-------LNFDVYDLELTT 72 (204)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~-------~~~~~~~~~~~~ 72 (204)
.++|.++..+++.+.+... -...+-+.++|+.|+|||+||+.+++. +...++.++.+.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred eeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 4667766666654444211 011344889999999999999988876 233455565544
No 222
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.43 E-value=0.00013 Score=57.05 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=26.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
.-+.|.|++|+||||+++.|++.+|.+++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 348899999999999999999999876655
No 223
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.43 E-value=4.7e-05 Score=58.18 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.-++|.|+|||||||+++.|++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4488999999999999999999864
No 224
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.42 E-value=7.6e-05 Score=58.23 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=24.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-+.+.||+|+|||||+++|++.....--.+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i 61 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 3478999999999999999999876543333
No 225
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.42 E-value=8.7e-05 Score=57.03 Aligned_cols=30 Identities=27% Similarity=0.373 Sum_probs=26.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
-+.+.|++|+||||+++.|++.+|.+++..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 488999999999999999999999877664
No 226
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.41 E-value=0.00022 Score=58.64 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=26.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCC-----ceEEeecCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNF-----DVYDLELTT 72 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~-----~~~~~~~~~ 72 (204)
-+.+.||+|+||||+++.|++.++. .+..+...+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 4789999999999999999998752 455555444
No 227
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.40 E-value=0.00013 Score=55.96 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=27.8
Q ss_pred CCCceeEEECCCCCcHHHHHHHHHHhcC----CceEEeec
Q 041769 35 AWKHSYFLYGPPGTGKSSLIAAMTNYLN----FDVYDLEL 70 (204)
Q Consensus 35 ~~~~g~ll~Gp~GtGKT~la~~la~~~~----~~~~~~~~ 70 (204)
..+.-++|.|+||+||||+++.|++.++ .+++.++.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 3344588999999999999999999875 44666653
No 228
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.39 E-value=0.00034 Score=68.65 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=49.5
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCccC---------------------hHHHHHHHHhc--
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFKE---------------------NMELRNMLIAT-- 86 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~~---------------------~~~~~~~~~~~-- 86 (204)
|++.+..++|+||||||||+|+..++... |..+++++...... ...+.+++...
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 57777789999999999999999988763 67788887765311 12223333332
Q ss_pred -CCCeEEEEecCCcc
Q 041769 87 -KNKSILVVGDIDYL 100 (204)
Q Consensus 87 -~~~~il~iDeid~~ 100 (204)
..+.+|+||++..+
T Consensus 110 ~~~~~LVVIDSLt~L 124 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAAL 124 (1706)
T ss_dssp HTCCSEEEESCSTTC
T ss_pred ccCCCEEEEcchhhh
Confidence 56789999999987
No 229
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.39 E-value=0.00019 Score=54.70 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=27.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
.-+.+.|++|+||||+++.|++.+ +.++..++..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 348899999999999999999976 5566665443
No 230
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.38 E-value=9.4e-05 Score=60.66 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=26.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
-+++.||+|+|||+++..||+.++..+++.|
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 4789999999999999999999987666554
No 231
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.38 E-value=6.6e-05 Score=55.87 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.9
Q ss_pred CceeEEECCCCCcHHHHHHHH
Q 041769 37 KHSYFLYGPPGTGKSSLIAAM 57 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~l 57 (204)
+.-+.++||||+|||||++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 344889999999999999964
No 232
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.38 E-value=0.00011 Score=58.67 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=25.0
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-+.+.||+|+|||||+++|++.+...--.+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i 63 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 3378999999999999999999876544333
No 233
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.38 E-value=0.00019 Score=57.93 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=29.2
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc----CCceEEeec
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL----NFDVYDLEL 70 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~----~~~~~~~~~ 70 (204)
+++.+.-+++.||||+|||||++.++..+ |.+++.++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45555558999999999999999999876 435655544
No 234
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.37 E-value=0.00014 Score=57.38 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=24.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
.-+.+.||+|+|||||+++|++.....--.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 54 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGE 54 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 457899999999999999999987654333
No 235
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.37 E-value=7e-05 Score=60.49 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=24.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc-CCceEE
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL-NFDVYD 67 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~-~~~~~~ 67 (204)
.-++|.|+||+||||+++.|+..+ +..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 348899999999999999999974 555443
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.37 E-value=0.00014 Score=55.64 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.-+.|+||+|+|||||++.|++.++
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4488999999999999999999875
No 237
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.36 E-value=0.00035 Score=62.62 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=24.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT 72 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~ 72 (204)
.+++||||||||+++-.+...+ +..+..+..++
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 7899999999998665555444 66776666554
No 238
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.36 E-value=0.00011 Score=58.47 Aligned_cols=30 Identities=37% Similarity=0.636 Sum_probs=24.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
-+.+.||+|+|||||+++|++.+...--.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i 64 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKADEGRV 64 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 378999999999999999999876544333
No 239
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.35 E-value=0.00011 Score=57.11 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=24.5
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
-+.+.||+|+|||||+++|++.+...--.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I 66 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 388999999999999999999776544333
No 240
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.35 E-value=0.00013 Score=58.39 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=24.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
.-+.|.||+|+|||||+++|++.+...--.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~ 80 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 80 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Confidence 338899999999999999999987654333
No 241
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.34 E-value=0.0001 Score=58.44 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=26.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEeecC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELT 71 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~ 71 (204)
.-+.+.||+|+|||||+++|++.+... -.+...
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~ 59 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFA 59 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEEC
Confidence 348899999999999999999988765 555443
No 242
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.34 E-value=0.00012 Score=59.05 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=24.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
-+.|.||+|+|||||+++|++.+...--.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I 65 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRI 65 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeEE
Confidence 388999999999999999999876544333
No 243
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.33 E-value=0.00012 Score=57.19 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=23.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.-+.+.||+|+|||||+++|++.+...
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~ 61 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELEPS 61 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 348899999999999999999987544
No 244
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.33 E-value=0.00012 Score=57.63 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=25.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-+.+.||+|+|||||+++|++.+...--.+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 63 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 3388999999999999999999876554443
No 245
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.33 E-value=0.00012 Score=59.07 Aligned_cols=29 Identities=31% Similarity=0.330 Sum_probs=25.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
-+.|.|++|+||||+++.|+ .+|.+++..
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 38899999999999999999 578777654
No 246
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.33 E-value=9.3e-05 Score=58.25 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.0
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+.-+.+.||+|+|||||+++|++.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 334889999999999999999997643
No 247
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.32 E-value=0.00015 Score=57.84 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=25.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-+.|.||+|+|||||+++|++.+...--.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I 72 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 3488999999999999999999876544333
No 248
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.30 E-value=0.00015 Score=58.14 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=25.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-+.|.||+|+|||||+++|++.+...--.+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I 76 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence 3488999999999999999999876544333
No 249
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.30 E-value=0.00014 Score=57.63 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=25.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-+.|.||+|+|||||+++|++.+...--.+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I 66 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 3488999999999999999999876554443
No 250
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.30 E-value=7.3e-05 Score=58.19 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=15.2
Q ss_pred ceeEEECCCCCcHHHHHHHHH-Hhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMT-NYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la-~~~ 61 (204)
.-+.|.||+|+||||+++.|+ +.+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 338899999999999999999 766
No 251
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.29 E-value=0.00024 Score=55.27 Aligned_cols=39 Identities=23% Similarity=0.197 Sum_probs=29.2
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHh----cCCceEEeecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNY----LNFDVYDLELT 71 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~----~~~~~~~~~~~ 71 (204)
|++.+.-++++|+||+|||+++..+|.. .+.++++++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4555566999999999999998876643 26677776654
No 252
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.29 E-value=0.00016 Score=57.81 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=25.0
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-+.+.||+|+|||||+++|++.+...--.+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I 64 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 3488999999999999999999876544333
No 253
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.29 E-value=0.00014 Score=55.32 Aligned_cols=22 Identities=50% Similarity=0.918 Sum_probs=20.8
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.|.||+|+||||+++.+++.+
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhc
Confidence 7899999999999999999986
No 254
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.28 E-value=0.00014 Score=56.20 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHh
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
+.-+.+.||+|+|||||++++++.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 334889999999999999999986
No 255
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.28 E-value=0.00015 Score=58.52 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=24.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
-+.|.||+|+|||||+++|++.+...--.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I 78 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPATSGTV 78 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCeEE
Confidence 378999999999999999999876554443
No 256
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.27 E-value=0.00021 Score=59.93 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=25.6
Q ss_pred HHhCCCCCceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 30 RNVGKAWKHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 30 ~~~~~~~~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
..+.+..+.-++++||+|+||||+++++++.+.
T Consensus 129 ~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 129 LELCHRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp HHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 333344444589999999999999999999773
No 257
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.27 E-value=0.0001 Score=58.12 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=23.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+.-+.+.||+|+|||||+++|++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQP 54 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 334889999999999999999997754
No 258
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.27 E-value=0.00015 Score=63.01 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
-++|+||+|+||||+++.|++.+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHh
Confidence 48899999999999999999976
No 259
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.27 E-value=0.00013 Score=58.51 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=23.8
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
|++.+.-++++||||+|||||+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44445558999999999999999999754
No 260
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.25 E-value=0.00043 Score=58.98 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=22.0
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+++.||+|+||||+++++++.+..
T Consensus 170 i~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhhcCC
Confidence 789999999999999999998853
No 261
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.25 E-value=0.0002 Score=59.76 Aligned_cols=27 Identities=26% Similarity=0.580 Sum_probs=23.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
-+.|.||+|+|||||+++|++.....-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p~~ 58 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQPDS 58 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCC
Confidence 378999999999999999999775543
No 262
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.25 E-value=0.00028 Score=58.70 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=31.4
Q ss_pred HHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 27 EFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 27 ~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
..++.+ ++..+| +.|.||+|+|||||++.|++........+
T Consensus 60 ~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i 102 (347)
T 2obl_A 60 RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVL 102 (347)
T ss_dssp HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 344555 555555 88999999999999999999987665443
No 263
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.22 E-value=0.00013 Score=58.52 Aligned_cols=27 Identities=37% Similarity=0.640 Sum_probs=23.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.-+.+.||+|+|||||+++|++.+...
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 64 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSPS 64 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 348899999999999999999977543
No 264
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.22 E-value=0.00034 Score=56.74 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.-+.+.||+|+||||+++.|++.++.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34789999999999999999998853
No 265
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.21 E-value=0.00047 Score=56.36 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=23.2
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHh
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
|++.+.-++++||||+|||+++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3454555899999999999999999875
No 266
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.21 E-value=0.00038 Score=57.59 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=27.6
Q ss_pred HHHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhc
Q 041769 26 KEFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 26 ~~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~ 61 (204)
...+..+.+....| +.|.||||+|||||++++++.+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34556666544444 7899999999999999999865
No 267
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.21 E-value=0.00047 Score=54.04 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=27.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEeecC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLELT 71 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~ 71 (204)
.++++||+|+|||.++.+++...+..++.+-+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999998887666665443
No 268
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.21 E-value=0.00017 Score=57.26 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=23.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
.-+.+.||+|+|||||+++|++.+...-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 59 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQ 59 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 3488999999999999999999875543
No 269
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.21 E-value=0.00023 Score=58.32 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=22.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.-+.+.||+|+|||||++.|++.+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 3478999999999999999999874
No 270
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.20 E-value=0.00028 Score=59.00 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
-+.|.||+|+|||||+++|++.....-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~ 57 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKPTS 57 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCCCc
Confidence 378999999999999999999775543
No 271
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.20 E-value=0.0004 Score=59.52 Aligned_cols=41 Identities=24% Similarity=0.312 Sum_probs=32.0
Q ss_pred HHHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 27 EFYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 27 ~~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
..++.+ ++.+.| +.|.||+|+|||||++.|++........+
T Consensus 146 ~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i 188 (438)
T 2dpy_A 146 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV 188 (438)
T ss_dssp HHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred eEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence 355666 666665 88999999999999999999987655443
No 272
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.19 E-value=0.00065 Score=51.85 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=25.7
Q ss_pred eEEECCCCCcHH-HHHHHHHHhc--CCceEEeecC
Q 041769 40 YFLYGPPGTGKS-SLIAAMTNYL--NFDVYDLELT 71 (204)
Q Consensus 40 ~ll~Gp~GtGKT-~la~~la~~~--~~~~~~~~~~ 71 (204)
.++|||.|+||| .|++++.+.. +..++.+...
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 778999999999 8889888765 6677776543
No 273
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.19 E-value=0.00017 Score=57.75 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.-+.|.||+|+|||||+++|++..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999999963
No 274
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.18 E-value=0.00025 Score=55.56 Aligned_cols=93 Identities=9% Similarity=0.128 Sum_probs=55.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEee-c-------C--------------CccChHHHHHH----HHhcCCCeEEE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLE-L-------T--------------TFKENMELRNM----LIATKNKSILV 93 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~-~-------~--------------~~~~~~~~~~~----~~~~~~~~il~ 93 (204)
+.|.||||+||||+++.|+..++.+.++.. + . .+.....+..+ +.......-++
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~g~I 90 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYL 90 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTTCEE
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCCCeE
Confidence 789999999999999999999998876642 0 0 00111111122 22211112356
Q ss_pred EecCCccc--hhhhhhc-cccceeEecCCCCHHHHHHHHHHh
Q 041769 94 VGDIDYLT--LHILLRS-SCMDMHIHMSYCTPFRFKMLASNY 132 (204)
Q Consensus 94 iDeid~~~--~~a~~r~-~R~~~~i~~~~p~~~~~~~i~~~~ 132 (204)
||.+-.-. ..++... ...+..|.+..|.....+.+..+.
T Consensus 91 LDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 91 FDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp EESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred ecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 78875431 1122221 256788888888877777776654
No 275
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.18 E-value=0.00061 Score=58.30 Aligned_cols=63 Identities=16% Similarity=0.299 Sum_probs=43.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCCcc--------------------------Ch-HHHHHHHHhcC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTTFK--------------------------EN-MELRNMLIATK 87 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~~~--------------------------~~-~~~~~~~~~~~ 87 (204)
..++++|+||+||||++..||..+ |..+..+++.... .. ..+.+.+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 358899999999999999999977 4566665543211 00 11234445555
Q ss_pred CCeEEEEecCCcc
Q 041769 88 NKSILVVGDIDYL 100 (204)
Q Consensus 88 ~~~il~iDeid~~ 100 (204)
...+++||.....
T Consensus 180 ~~D~vIIDT~G~~ 192 (432)
T 2v3c_C 180 KADVLIIDTAGRH 192 (432)
T ss_dssp SCSEEEEECCCSC
T ss_pred CCCEEEEcCCCCc
Confidence 6678999998877
No 276
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.18 E-value=0.00021 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
-.+|+||+|+|||+++++|+..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3679999999999999999998753
No 277
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.18 E-value=0.00032 Score=60.53 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=37.7
Q ss_pred eeEEECCCCCcHHHHHHHH-HHhcCCceEEeecCCccChHHHH-------------HHHHhcCCCeEEEEecCCcc
Q 041769 39 SYFLYGPPGTGKSSLIAAM-TNYLNFDVYDLELTTFKENMELR-------------NMLIATKNKSILVVGDIDYL 100 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~l-a~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~il~iDeid~~ 100 (204)
++|+.|+||| ||.+++++ ++.++...+..... .....+. ..+ ..+..+++++||++.+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~--ss~~gLt~s~r~~tG~~~~~G~l-~LAdgGvl~lDEIn~~ 312 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRR--TELTDLTAVLKEDRGWALRAGAA-VLADGGILAVDHLEGA 312 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGG--CCHHHHSEEEEESSSEEEEECHH-HHTTTSEEEEECCTTC
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCC--CCccCceEEEEcCCCcccCCCee-EEcCCCeeehHhhhhC
Confidence 6999999999 99999999 77766555432111 0000010 000 1235789999999999
No 278
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.18 E-value=0.00026 Score=59.06 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
-+.|.||+|+|||||+++|++.....
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p~ 68 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERPT 68 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 37899999999999999999976544
No 279
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.18 E-value=0.0003 Score=57.49 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=26.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
.-++++||+|+||||++..||..+ +..+..++..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 348899999999999999999877 5556555543
No 280
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.17 E-value=0.0003 Score=59.08 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
-+.|.||+|+|||||+++|++.....
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p~ 64 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEPT 64 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCC
Confidence 37899999999999999999977544
No 281
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.17 E-value=0.00015 Score=57.82 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.7
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+.-+.+.||+|+|||||+++|++.+.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 33488999999999999999999765
No 282
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.17 E-value=0.00016 Score=57.26 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.-+.+.||+|+|||||+++|++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34889999999999999999996
No 283
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.16 E-value=0.00032 Score=52.96 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=28.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEEeecCC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYDLELTT 72 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~~~ 72 (204)
++++|++|+|||++|..++.. +.+++++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888877654
No 284
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.16 E-value=0.00029 Score=53.95 Aligned_cols=29 Identities=14% Similarity=0.191 Sum_probs=26.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
-+.+.|++|+|||++++.||+.+|.+++.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 48899999999999999999999999875
No 285
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.15 E-value=0.00091 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|+..+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999988643
No 286
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.15 E-value=0.0016 Score=46.96 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=19.2
Q ss_pred eEEECCCCCcHHHHHHHHHHh
Q 041769 40 YFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~ 60 (204)
+++.|++|+|||+|++.+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 287
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.15 E-value=0.00029 Score=59.18 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
-+.|.||+|+|||||+++|++.....
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEPS 56 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCCC
Confidence 37899999999999999999977544
No 288
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.14 E-value=0.00025 Score=59.04 Aligned_cols=28 Identities=21% Similarity=0.539 Sum_probs=23.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
.-+.|.||+|+|||||+++|++.....-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~ 54 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDS 54 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSE
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCC
Confidence 3478999999999999999999765443
No 289
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.14 E-value=0.00078 Score=57.06 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=21.7
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHH
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~ 59 (204)
|++.+.-+.|+||||+|||+|++.++.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 455555589999999999999997663
No 290
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.14 E-value=0.0001 Score=56.22 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+.|.|++|+||||+++.|++.++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999884
No 291
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.14 E-value=0.00042 Score=56.47 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=22.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
-+.|.||+|+||||+++.|++.++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999876
No 292
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.13 E-value=0.00026 Score=59.99 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=26.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
-+++.||+|+|||+++..||..++..+++.|
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 3789999999999999999999987666543
No 293
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.12 E-value=0.0003 Score=58.71 Aligned_cols=24 Identities=50% Similarity=0.857 Sum_probs=21.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
-+++.||+|+||||+++++++.++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 388999999999999999998873
No 294
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.11 E-value=0.00041 Score=52.02 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=23.7
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
+.|++|.|+||+||||++..+... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 568999999999999999999884 5443
No 295
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.11 E-value=0.00032 Score=57.29 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.-+.++||+|+||||+++.||+.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 348899999999999999999977
No 296
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.11 E-value=0.0003 Score=56.23 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=24.6
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
+.-+.+.||+|+|||||+++|++.+ ..--.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I 60 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNI 60 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEE
Confidence 3348899999999999999999977 543333
No 297
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.11 E-value=0.00026 Score=59.13 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=23.5
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..+++.||+|+||||++++|++.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 344899999999999999999998754
No 298
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.10 E-value=0.00025 Score=58.55 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=23.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
..+++.||+|+||||++++|++.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 44899999999999999999998854
No 299
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.10 E-value=0.0014 Score=48.70 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.+++.|++|+|||+|++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 489999999999999999987653
No 300
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.09 E-value=0.00024 Score=59.22 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=23.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
-+.|.||+|+|||||+++|++.....-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p~~ 59 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVPST 59 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCSE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCc
Confidence 378999999999999999999775443
No 301
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.07 E-value=0.00044 Score=57.88 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
-+.+.||+|+|||||+++|++.....-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p~~ 82 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERPTE 82 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCCCc
Confidence 388999999999999999999876543
No 302
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.07 E-value=0.0011 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 303
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.07 E-value=0.00027 Score=57.75 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=24.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
-+.|+||+|+|||||+++|++.+...--.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p~~G~ 110 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDISSGC 110 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCCSEEE
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCcE
Confidence 38899999999999999999988654333
No 304
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.06 E-value=0.00018 Score=58.24 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=24.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC---CceEEeecCCc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLELTTF 73 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~~~~~ 73 (204)
-+.+.||+|+||||+++.|+..++ ..+..+++.++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 478999999999999999999876 34445554443
No 305
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.0012 Score=47.87 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.9
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 306
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.06 E-value=0.00027 Score=56.66 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.+.+.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999999773
No 307
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.05 E-value=0.00053 Score=56.36 Aligned_cols=34 Identities=32% Similarity=0.561 Sum_probs=27.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
.-++++||+|+||||++..||..+ +..+..++..
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 348899999999999999999877 5666666554
No 308
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.05 E-value=0.0003 Score=57.03 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
-+.+.||+|+|||||+++|++.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3889999999999999999998743
No 309
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.04 E-value=0.001 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 310
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.04 E-value=0.0011 Score=50.43 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
..++++|++|+|||+|+..+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 459999999999999999999865
No 311
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.04 E-value=0.00071 Score=55.33 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=30.0
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
|++.+.-+++.|+||+|||+|+..+|... +.+++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 46555569999999999999999998765 4566666543
No 312
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.03 E-value=0.0011 Score=47.86 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.9
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 313
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.03 E-value=0.0004 Score=57.92 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=24.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
.-+.+.||+|+|||||++.|++.+....
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 3488999999999999999999886543
No 314
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.02 E-value=0.0004 Score=57.31 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.-+.|.||+|+||||+++.|++.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3448899999999999999999987
No 315
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.02 E-value=0.0012 Score=50.35 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=27.8
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
+++|+++|.||||+|-++|-.. |..+..+++.
T Consensus 31 i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 31 IIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFI 65 (196)
T ss_dssp EEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 8899999999999998888777 8888888653
No 316
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.02 E-value=0.00093 Score=48.34 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 317
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.01 E-value=0.0012 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 318
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.01 E-value=0.00049 Score=61.50 Aligned_cols=32 Identities=31% Similarity=0.644 Sum_probs=28.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEee
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLE 69 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~ 69 (204)
.-++|.|.||+||||+++.|++.+ |.+++.++
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 348899999999999999999999 88888875
No 319
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.99 E-value=0.00049 Score=58.88 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=27.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
.-++++||+|+||||++..||..+ |..+..++..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 348899999999999999999877 6666665543
No 320
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.99 E-value=0.00075 Score=50.37 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=25.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc---CCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~ 69 (204)
-+.|.|++|+||||++..|+..+ |..+..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 47899999999999999999876 45555554
No 321
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.99 E-value=0.00042 Score=60.53 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=23.9
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+..+++.||+|+||||+++++++.+..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 445999999999999999999998854
No 322
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.98 E-value=0.00056 Score=53.41 Aligned_cols=28 Identities=32% Similarity=0.559 Sum_probs=24.0
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC--CceEE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN--FDVYD 67 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~--~~~~~ 67 (204)
+.|.||||+||||+++.|++.++ ..++.
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 77899999999999999999986 35543
No 323
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.98 E-value=0.0013 Score=47.39 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.9
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 324
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.97 E-value=0.0016 Score=48.87 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|+..+...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 325
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.96 E-value=0.0012 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.5
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+...-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 326
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.96 E-value=0.0017 Score=47.73 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4999999999999999999864
No 327
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.96 E-value=0.00056 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.-+.|.|++|+||||+++.|.+.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 448899999999999999999875
No 328
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.95 E-value=0.00052 Score=49.69 Aligned_cols=20 Identities=40% Similarity=0.697 Sum_probs=18.5
Q ss_pred eEEECCCCCcHHHHHHHHHH
Q 041769 40 YFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~ 59 (204)
+++.|++|+|||+|++.+.+
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 89999999999999999865
No 329
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.95 E-value=0.00085 Score=55.11 Aligned_cols=38 Identities=18% Similarity=0.095 Sum_probs=27.7
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc-----CCceEEeecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL-----NFDVYDLELT 71 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~-----~~~~~~~~~~ 71 (204)
|++.+ -++++||||+|||+|+-.++..+ +..+++++..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 46655 48899999999999976665544 5567777654
No 330
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.92 E-value=0.00092 Score=57.43 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=25.5
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc---CC-ceEEeec
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL---NF-DVYDLEL 70 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~---~~-~~~~~~~ 70 (204)
.+++.|+||||||+++.+++..+ +. .++.+..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 59999999999999999999887 33 4554443
No 331
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.92 E-value=0.001 Score=57.17 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=30.0
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc----CCceEEeecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL----NFDVYDLELT 71 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~----~~~~~~~~~~ 71 (204)
|++.+.-+++.|+||+|||+|+..++..+ |.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 45555558999999999999999988865 5567776643
No 332
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.92 E-value=0.00052 Score=51.76 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
-+.+.|++|+|||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999999863
No 333
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.90 E-value=0.0018 Score=47.15 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.0
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
..+++.|++|+|||+|++.+...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 349999999999999999998754
No 334
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.90 E-value=0.0011 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
-+++.|++|+|||+|++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998643
No 335
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.89 E-value=0.00041 Score=58.61 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=21.5
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
-+.|.||+|+|||||+++|++...
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 388999999999999999999654
No 336
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.89 E-value=0.0016 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.-+++.|++|+|||+|++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34999999999999999999865
No 337
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.88 E-value=0.0005 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
-+.+.|++|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
No 338
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.88 E-value=0.0021 Score=46.90 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.9
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 339
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.87 E-value=0.0015 Score=47.82 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 340
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.84 E-value=0.0015 Score=55.99 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=28.4
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT 72 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~ 72 (204)
+.-++++|++|+||||++..||..+ |..+..+++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3458899999999999999999877 66676666543
No 341
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.83 E-value=0.00033 Score=52.33 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.+.++|++|+||||+++.|++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3789999999999999999998843
No 342
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.83 E-value=0.0012 Score=56.46 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=29.8
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc----CCceEEeecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL----NFDVYDLELT 71 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~----~~~~~~~~~~ 71 (204)
|++.+.-++++|+||+|||+|+..+|... |.+++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45555558999999999999999888764 5567776653
No 343
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.82 E-value=0.00078 Score=52.49 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=26.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
-+.+.|++|||||++++.||+.+|.+++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 47899999999999999999999988865
No 344
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.80 E-value=0.0017 Score=48.28 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+....
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998744
No 345
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.79 E-value=0.0034 Score=46.73 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4999999999999999999873
No 346
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.79 E-value=0.0018 Score=48.17 Aligned_cols=22 Identities=18% Similarity=0.307 Sum_probs=19.9
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 347
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.79 E-value=0.00086 Score=51.80 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=27.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEeec
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLEL 70 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~~ 70 (204)
.+.|.|..||||||+++.++. +|.+++..|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 488999999999999999998 8998888664
No 348
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.78 E-value=0.00085 Score=58.73 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=22.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
-++++|.||+||||+++.|++.++
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999884
No 349
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.77 E-value=0.0021 Score=59.90 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=19.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.-++|.||+|+||||+++.++..
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHH
Confidence 34889999999999999998753
No 350
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.00075 Score=58.19 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCCceeEEECCCCCcHHHHHHHHHHhc
Q 041769 35 AWKHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 35 ~~~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
..+.-+.+.||+|+|||||++.|++.+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 333448999999999999999999987
No 351
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.76 E-value=0.00079 Score=57.43 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.|+||+|+|||||+++|++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 7899999999999999999863
No 352
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.76 E-value=0.0029 Score=47.49 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
..+++.|++|+|||+|++.+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 34999999999999999999864
No 353
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.76 E-value=0.00098 Score=49.62 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=20.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999987654
No 354
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.76 E-value=0.0023 Score=48.51 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=20.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
..+++.|++|+|||+|+..+....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 349999999999999999998643
No 355
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.76 E-value=0.0017 Score=55.46 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=27.4
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
+..++++|++|+||||++..||..+ +..+..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 3457889999999999999999887 5566665543
No 356
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.75 E-value=0.0018 Score=48.56 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=20.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
..+++.|++|+|||+|++.+...-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 348999999999999999998643
No 357
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.75 E-value=0.00059 Score=60.14 Aligned_cols=35 Identities=31% Similarity=0.318 Sum_probs=27.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC----CceEEeecC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN----FDVYDLELT 71 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~----~~~~~~~~~ 71 (204)
+..+.|.|++|+||||++++|++.++ ..+..++..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 34488999999999999999999985 235445543
No 358
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.74 E-value=0.0016 Score=53.94 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=29.8
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeec
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLEL 70 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~ 70 (204)
|+..+.-+++.|+||+|||+|+..+|..+ +.++.++++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45555558999999999999999998875 667766654
No 359
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.73 E-value=0.011 Score=55.99 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=25.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh------cCCceEEeecC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY------LNFDVYDLELT 71 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~------~~~~~~~~~~~ 71 (204)
+-+.++|+.|+|||+||+.+++. ++..++.++.+
T Consensus 151 RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs 190 (1221)
T 1vt4_I 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190 (1221)
T ss_dssp CEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECC
T ss_pred eEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeC
Confidence 45889999999999999999853 24445555544
No 360
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.73 E-value=0.00077 Score=49.19 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.9
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
-+.+.|+||+|||||++.+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999874
No 361
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.0019 Score=48.23 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+...-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 49999999999999999998643
No 362
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.72 E-value=0.00094 Score=48.58 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++||+|+|||+++.+|.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998766
No 363
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.71 E-value=0.00081 Score=57.17 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.|.||||+|||||+++|++..
T Consensus 72 valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7899999999999999999955
No 364
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.69 E-value=0.0017 Score=48.41 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38999999999999999998755
No 365
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.69 E-value=0.0012 Score=58.35 Aligned_cols=33 Identities=30% Similarity=0.266 Sum_probs=28.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC----CceEEeecC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN----FDVYDLELT 71 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~----~~~~~~~~~ 71 (204)
-++|.|+||+||||++++|++.++ .+++.++..
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 478999999999999999999986 677777644
No 366
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.69 E-value=0.002 Score=47.74 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.5
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+...-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998753
No 367
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.68 E-value=0.0026 Score=59.31 Aligned_cols=21 Identities=29% Similarity=0.293 Sum_probs=18.6
Q ss_pred eeEEECCCCCcHHHHHHHHHH
Q 041769 39 SYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~ 59 (204)
-++|.||+|+||||+++.++.
T Consensus 664 i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999943
No 368
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.67 E-value=0.00071 Score=50.31 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=19.5
Q ss_pred eEEECCCCCcHHHHHHHHHHh
Q 041769 40 YFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~ 60 (204)
+.+.|++|+|||||++.+++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 889999999999999999873
No 369
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.67 E-value=0.0011 Score=58.17 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.6
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+.-+.|.||+|+|||||+++|++.+.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33488999999999999999999764
No 370
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.66 E-value=0.0033 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
..+++.|++|+|||+|++.+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999875
No 371
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.00087 Score=49.93 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.7
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
...++++|++|+|||+|+..+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3459999999999999999998854
No 372
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.64 E-value=0.0011 Score=47.49 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.0
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+++.|++|+|||++++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999998753
No 373
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.63 E-value=0.0026 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999998753
No 374
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.0027 Score=47.08 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=20.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHH
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~ 59 (204)
...+++.|++|+|||+|++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34599999999999999999985
No 375
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.63 E-value=0.024 Score=46.34 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=41.3
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CC-ceEEeecCCccChHHHHHHHHhc------CCCeEEEEecCCc-cc
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NF-DVYDLELTTFKENMELRNMLIAT------KNKSILVVGDIDY-LT 101 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~il~iDeid~-~~ 101 (204)
...++||||+|.||++.++.+++.+ +. +...+.... ..++++++... ....+++|||++. ++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~ 90 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN 90 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC
Confidence 4569999999999999999998876 32 222222222 23344443332 4678999999998 73
No 376
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.60 E-value=0.0054 Score=50.81 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=20.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
-+.|.|+||+|||||++++++.+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999864
No 377
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.60 E-value=0.0019 Score=56.50 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=28.2
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeec
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLEL 70 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~ 70 (204)
+++.+.-+++.||||+|||||++.++... |..++.+..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45555568999999999999999999865 334444443
No 378
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.60 E-value=0.0011 Score=48.98 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
-+.+.|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 379
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.60 E-value=0.002 Score=55.24 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=30.4
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
|++.+.-+++.|+||+|||+|+..+|... |.++..+++-
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 45555559999999999999998888766 6677776553
No 380
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.59 E-value=0.0013 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 381
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.58 E-value=0.00061 Score=53.99 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.9
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
-+.|.|++|+||||+++.|++.++
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 378999999999999999999983
No 382
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.58 E-value=0.0042 Score=46.82 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999764
No 383
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.57 E-value=0.0021 Score=49.62 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=24.0
Q ss_pred eEEECCCCCcHHHHHHHHHHhc---CCceEEe
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL---NFDVYDL 68 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~~ 68 (204)
+.|.|++|+||||+++.|+..+ |.+++..
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 7788999999999999999988 3455443
No 384
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.57 E-value=0.0043 Score=51.20 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.-+.+.|+||+||||++..++..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 348899999999999999999765
No 385
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.57 E-value=0.002 Score=53.43 Aligned_cols=32 Identities=34% Similarity=0.392 Sum_probs=25.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc---CCceEEeec
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLEL 70 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~ 70 (204)
-+.|.|+||+||||++..++..+ |..+..++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 48899999999999999999876 555555443
No 386
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.56 E-value=0.0016 Score=50.62 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=22.4
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
+.|.|++|+||||+++.|++. +..+..
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 789999999999999999997 444433
No 387
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.56 E-value=0.00051 Score=52.00 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=21.8
Q ss_pred CCCCceeEEECCCCCcHHHHHHHHHHhc
Q 041769 34 KAWKHSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 34 ~~~~~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+..+.-+.+.|++|+|||||++.+++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3333448999999999999999988654
No 388
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.56 E-value=0.0012 Score=48.13 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999764
No 389
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.56 E-value=0.0023 Score=57.18 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=19.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999877776654
No 390
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.55 E-value=0.0014 Score=58.06 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=24.9
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
-+.+.||+|+||||+++.+++.+...--.+
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i 400 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDIDEGHI 400 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhhccCCCCCeE
Confidence 388999999999999999999876554333
No 391
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.53 E-value=0.003 Score=52.96 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=28.6
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
..++++.||+|+|||++++.++..+ +..++.+|..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4569999999999999999998765 6677777764
No 392
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.52 E-value=0.0011 Score=53.83 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=22.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
-+.|.||||+|||||+++|++......
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~~ 197 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLRV 197 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC-
T ss_pred eEEEECCCCCcHHHHHHHhcccccccc
Confidence 378999999999999999999775443
No 393
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.52 E-value=0.0014 Score=57.95 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=27.5
Q ss_pred HHHHhCCCCCce--eEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 28 FYRNVGKAWKHS--YFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 28 ~~~~~~~~~~~g--~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.++++.+..+.| +.++||+|+||||+++.+++.+.+.
T Consensus 358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 396 (582)
T 3b5x_A 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD 396 (582)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344444433344 8899999999999999999987543
No 394
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.52 E-value=0.002 Score=48.56 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=23.3
Q ss_pred HHHhCCCCCc-eeEEECCCCCcHHHHHHHHHH
Q 041769 29 YRNVGKAWKH-SYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 29 ~~~~~~~~~~-g~ll~Gp~GtGKT~la~~la~ 59 (204)
+..+++..+. .+++.|++|+|||+|++.+.+
T Consensus 16 l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4444443333 489999999999999999875
No 395
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.52 E-value=0.0015 Score=51.01 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=22.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
-+.|.|++|+||||+++.|++.++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999984
No 396
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.51 E-value=0.0015 Score=47.65 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.9
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 397
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.51 E-value=0.002 Score=56.27 Aligned_cols=35 Identities=14% Similarity=-0.016 Sum_probs=28.0
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCC-----ceEEeecCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNF-----DVYDLELTT 72 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~-----~~~~~~~~~ 72 (204)
..+.|.|.+|+||||++++||+.++. ++..++...
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 34889999999999999999999985 344555543
No 398
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.51 E-value=0.0012 Score=57.69 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=26.1
Q ss_pred CCCceeEEECCCCCcHHHHHHH--HHHhc--CCceEEeecC
Q 041769 35 AWKHSYFLYGPPGTGKSSLIAA--MTNYL--NFDVYDLELT 71 (204)
Q Consensus 35 ~~~~g~ll~Gp~GtGKT~la~~--la~~~--~~~~~~~~~~ 71 (204)
+.+.-++|.||||+|||||++. +++.. +...+.++..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4445589999999999999999 45554 3344555443
No 399
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.51 E-value=0.0016 Score=47.17 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 400
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.50 E-value=0.0017 Score=56.24 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=22.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
..+.|.||+|+|||||+++|++.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 45789999999999999999998743
No 401
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.50 E-value=0.00082 Score=54.65 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.8
Q ss_pred eEEECCCCCcHHHHHHHHHHh
Q 041769 40 YFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~ 60 (204)
+++.||+|+|||||++.|+..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999998764
No 402
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.50 E-value=0.0031 Score=51.04 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=26.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeec
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLEL 70 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~ 70 (204)
..+.++|++|+||||++..+|..+ +..+..++.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 347788999999999999999887 455655554
No 403
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.49 E-value=0.003 Score=47.27 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=19.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHH
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~ 59 (204)
..+++.|++|+|||+|+..+..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4599999999999999999864
No 404
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.49 E-value=0.0015 Score=47.27 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 405
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.48 E-value=0.0013 Score=48.39 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
-+.+.|+||+|||||++.+++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999975
No 406
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.48 E-value=0.0012 Score=55.11 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
-+.|.||||+|||||+++|++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 488999999999999999998765
No 407
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.47 E-value=0.0015 Score=47.37 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.6
Q ss_pred eEEECCCCCcHHHHHHHHHH
Q 041769 40 YFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~ 59 (204)
+++.|++|+|||+|++.+.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999999975
No 408
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.46 E-value=0.0017 Score=47.46 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
..+++.|++|+|||+|++.+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 348999999999999999988743
No 409
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.46 E-value=0.00088 Score=57.77 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.-++++|.||+||||+++.|++.++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3489999999999999999999874
No 410
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.45 E-value=0.002 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=17.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.|.|++|+||||+++.|++.+
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7788999999999999999988
No 411
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.43 E-value=0.0045 Score=46.31 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 49999999999999999887754
No 412
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.42 E-value=0.0018 Score=52.68 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
-+.|.||||+|||||+++|+ ....
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhC
Confidence 47899999999999999999 6644
No 413
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.42 E-value=0.0014 Score=58.20 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=24.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
-+.+.||+|+||||+++.|++.+...--.+
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i 401 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYDPASGTI 401 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSCCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCcEE
Confidence 388999999999999999999876554333
No 414
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.41 E-value=0.0019 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
..+++.|++|+|||+|++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999864
No 415
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.41 E-value=0.0017 Score=57.71 Aligned_cols=31 Identities=23% Similarity=0.567 Sum_probs=25.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCceEEe
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFDVYDL 68 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~~~~~ 68 (204)
.-+.+.||+|+||||+++.+++.+...--.+
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 412 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence 3488999999999999999999886654333
No 416
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.41 E-value=0.0079 Score=48.08 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
-+.|.|+||+|||||.+++.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3889999999999999999974
No 417
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.41 E-value=0.0023 Score=46.70 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
..+++.|++|+|||+|++.+.+.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999999763
No 418
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.41 E-value=0.00071 Score=52.89 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=21.3
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+.++||+|+||||++++|+..+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhccccc
Confidence 567899999999999999998854
No 419
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.40 E-value=0.0046 Score=47.08 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
..+.+.|++|+||||++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3488999999999999999998763
No 420
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.39 E-value=0.0018 Score=57.77 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
.-+.|.||+|+|||||+++|++.+.
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 3488999999999999999999764
No 421
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.39 E-value=0.0028 Score=49.12 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVY 66 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~ 66 (204)
-+.|.|++|+||||.++.|+..++..+.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 3788999999999999999999987443
No 422
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.39 E-value=0.0019 Score=49.30 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=21.5
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.+++||+|+|||+++.+|.-.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 689999999999999999887754
No 423
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.39 E-value=0.0026 Score=52.02 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.5
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCce
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDV 65 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~ 65 (204)
+.|++|.|++|+|||+++..+.+. |..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 568999999999999999999885 4433
No 424
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.38 E-value=0.002 Score=47.86 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
..+++.|++|+|||+|+..+.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34899999999999999999886
No 425
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0022 Score=57.14 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
-+.|.||+|+|||||++.|++.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 3889999999999999999997743
No 426
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.37 E-value=0.0027 Score=55.09 Aligned_cols=39 Identities=13% Similarity=-0.022 Sum_probs=29.8
Q ss_pred CCCCCceeEEECCCCCcHHHHHHHHHHhc----CCceEEeecC
Q 041769 33 GKAWKHSYFLYGPPGTGKSSLIAAMTNYL----NFDVYDLELT 71 (204)
Q Consensus 33 ~~~~~~g~ll~Gp~GtGKT~la~~la~~~----~~~~~~~~~~ 71 (204)
|++.+.-+++.|+||+|||+|+..+|... |.++..+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 45555558999999999999999888765 4567776653
No 427
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.36 E-value=0.0028 Score=45.81 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
..+++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999763
No 428
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.35 E-value=0.0013 Score=58.18 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=25.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEEee
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYDLE 69 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~~~ 69 (204)
-+.++||+|+||||+++.+++.+...--.+.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 399 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 3889999999999999999998866544433
No 429
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.35 E-value=0.002 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.9
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 430
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.35 E-value=0.0066 Score=48.03 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+.|.|+||+|||||..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3889999999999999999876
No 431
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.34 E-value=0.002 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 432
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.34 E-value=0.0022 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|+..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 433
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.33 E-value=0.0031 Score=51.21 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=27.9
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT 72 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~ 72 (204)
-+++.|++|+||||++..+|..+ +..+..++...
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 47789999999999999999877 66777766653
No 434
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.32 E-value=0.0021 Score=47.61 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=20.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 435
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.31 E-value=0.0018 Score=48.16 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.5
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
..+++.|++|+|||+|+..+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34999999999999999999864
No 436
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.30 E-value=0.0042 Score=48.68 Aligned_cols=31 Identities=32% Similarity=0.633 Sum_probs=25.6
Q ss_pred eEEECCCCCcHHHHHHHHHHhc--CCceEEeec
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL--NFDVYDLEL 70 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~--~~~~~~~~~ 70 (204)
+++.|.+|+||||++..++..+ |..+..++.
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 7889999999999999999766 666666654
No 437
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.29 E-value=0.002 Score=56.55 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
-+.+.||+|+|||||+++|++...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999999774
No 438
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.29 E-value=0.0022 Score=46.82 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998753
No 439
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.29 E-value=0.0022 Score=47.23 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+.+.-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 440
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.29 E-value=0.0047 Score=53.78 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=27.8
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELT 71 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~ 71 (204)
..++|+|+||+||||++..||..+ |..+..++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 348899999999999999999776 6677666653
No 441
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.28 E-value=0.0018 Score=47.78 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.4
Q ss_pred eEEECCCCCcHHHHHHHHHHh
Q 041769 40 YFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~ 60 (204)
+++.|++|+|||+|++.+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 889999999999999999874
No 442
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.27 E-value=0.0041 Score=57.16 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=19.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
-+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999877776654
No 443
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.27 E-value=0.0021 Score=57.30 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
-+.+.||+|+|||||+++|++.+.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999999764
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.27 E-value=0.0022 Score=56.34 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+.|.||+|+|||||+++|++.+..
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 779999999999999999997743
No 445
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.26 E-value=0.0026 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+...-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998643
No 446
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.25 E-value=0.0024 Score=53.35 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=19.9
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
++++||+|+||||+..+|+..+
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998665
No 447
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.25 E-value=0.0027 Score=46.68 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
No 448
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.24 E-value=0.0019 Score=56.81 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
-+.|.||+|+|||||+++|++....
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3789999999999999999997743
No 449
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.24 E-value=0.0024 Score=47.74 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=19.7
Q ss_pred eeEEECCCCCcHHHHHHHHHH
Q 041769 39 SYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~ 59 (204)
.+++.|++|+|||+|++.+.+
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
No 450
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.24 E-value=0.0027 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 451
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.23 E-value=0.0024 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
-++|.|++|+|||||++++.+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 48999999999999999998754
No 452
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.23 E-value=0.0024 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
-+.|.|++|+||||+++.|+..+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999999988
No 453
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.22 E-value=0.0028 Score=47.03 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.4
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+...-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 454
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.22 E-value=0.0055 Score=52.37 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=29.1
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhc----CCceEEeecCC
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYL----NFDVYDLELTT 72 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~----~~~~~~~~~~~ 72 (204)
+..++++|++|+||||++-.||..+ |..+..+++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3458899999999999999888766 67777777664
No 455
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.21 E-value=0.0049 Score=54.91 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.8
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.++||+|+||||++++|++..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 8899999999999999999975
No 456
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.20 E-value=0.0023 Score=47.41 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
-+++.|++|+|||+|++.+.+.-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 49999999999999999998753
No 457
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.19 E-value=0.0029 Score=47.02 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
-+++.|++|+|||+|++.+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999877764
No 458
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.19 E-value=0.0029 Score=47.48 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
..+++.|++|+|||+|++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 348999999999999999998754
No 459
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.18 E-value=0.0085 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
-++|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3899999999999999988753
No 460
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.18 E-value=0.0023 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+.|.|+||+|||||++++.+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 461
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.18 E-value=0.0023 Score=56.77 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=24.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCCceEE
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNFDVYD 67 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~~~~~ 67 (204)
-+.++||+|+||||+++.+++.+...--.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~ 399 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDPERGR 399 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCcE
Confidence 38899999999999999999987654433
No 462
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.17 E-value=0.0031 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
..+++.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34999999999999999999864
No 463
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.16 E-value=0.0042 Score=52.81 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=23.1
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCCc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNFD 64 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~~ 64 (204)
.-..|+||+|+|||+++.+|+..++..
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 447899999999999999999988653
No 464
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.16 E-value=0.0023 Score=46.85 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=20.1
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 465
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.16 E-value=0.0061 Score=46.56 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.3
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.-+.+.|.+|+||||++..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 448899999999999999999875
No 466
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.16 E-value=0.0027 Score=51.88 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=23.2
Q ss_pred CceeEEECCCCCcHHHHHHHHHHhcCCceE
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNYLNFDVY 66 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~~~~~~~ 66 (204)
+.|++|.|+||+|||++|..+.. -|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 46799999999999999988876 344443
No 467
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.15 E-value=0.00088 Score=54.74 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=20.2
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
.-+.|.||||+|||||+++|+.....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~ 199 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGL 199 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC----
T ss_pred CEEEEECCCCCCHHHHHHHhcccccc
Confidence 44889999999999999999986643
No 468
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.15 E-value=0.0032 Score=46.87 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
-+++.|++|+|||+|++.+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 3999999999999999988764
No 469
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.14 E-value=0.0033 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+.+.-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 49999999999999999998753
No 470
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.13 E-value=0.0033 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999754
No 471
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.13 E-value=0.0022 Score=54.58 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.|.||+|+|||||++.+++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7899999999999999999764
No 472
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.13 E-value=0.0034 Score=46.73 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.9
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+++.|++|+|||+|++.+...-
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998643
No 473
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.12 E-value=0.003 Score=47.57 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|+..+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 474
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.11 E-value=0.0033 Score=53.01 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
-++++||||+|||++++.|++..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 39999999999999999998864
No 475
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.11 E-value=0.0031 Score=46.25 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=19.3
Q ss_pred eeEEECCCCCcHHHHHHHHHH
Q 041769 39 SYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~ 59 (204)
.+++.|++|+|||+|++.+..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 489999999999999999985
No 476
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.10 E-value=0.0034 Score=48.88 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.6
Q ss_pred eEEECCCCCcHHHHHHHHHHhcCC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
+.|.|++|+||||+++.|++.++.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 778899999999999999998754
No 477
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.09 E-value=0.0031 Score=47.36 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.6
Q ss_pred eeEEECCCCCcHHHHHHHHHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+++.|++|+|||+|++.+.+.-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 49999999999999999998754
No 478
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.07 E-value=0.0036 Score=47.16 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.4
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
..+++.|++|+|||+|+..+...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999864
No 479
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.06 E-value=0.0028 Score=46.82 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=20.8
Q ss_pred CceeEEECCCCCcHHHHHHHHHHh
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
...+++.|++|+|||+|++.+.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345999999999999999999864
No 480
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.06 E-value=0.0031 Score=48.14 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=19.3
Q ss_pred eeEEECCCCCcHHHHHHH-HHHhc
Q 041769 39 SYFLYGPPGTGKSSLIAA-MTNYL 61 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~-la~~~ 61 (204)
.+++.|++|+|||+|++. +.+..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 499999999999999998 55443
No 481
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.06 E-value=0.0032 Score=48.58 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.7
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.|.|++|+||||.++.|+..+
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7789999999999999999988
No 482
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.05 E-value=0.0038 Score=46.81 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.8
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
-+++.|+||+|||+|+..+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999863
No 483
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.03 E-value=0.0015 Score=55.11 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.2
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcCC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLNF 63 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~~ 63 (204)
-+.|+||+|+|||+++++|+..++.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3789999999999999999888764
No 484
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.02 E-value=0.0037 Score=55.67 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=19.9
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+-+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 448999999999999888776554
No 485
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.02 E-value=0.0035 Score=47.60 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=20.3
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999875
No 486
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.02 E-value=0.0042 Score=45.57 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=19.9
Q ss_pred CceeEEECCCCCcHHHHHHHHHH
Q 041769 37 KHSYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 37 ~~g~ll~Gp~GtGKT~la~~la~ 59 (204)
...+++.|++|+|||+|+..+..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34599999999999999988874
No 487
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.01 E-value=0.0027 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+++.|++|+||||+++.+.+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 7899999999999999999864
No 488
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0045 Score=55.17 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.2
Q ss_pred eEEECCCCCcHHHHHHHHHHhcC
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYLN 62 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~~ 62 (204)
+.+.||+|+|||||+++|++...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 78999999999999999999773
No 489
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.00 E-value=0.0055 Score=53.91 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=26.5
Q ss_pred eeEEECCCCCcHHHHHHHHHHhcC---CceEEeecC
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNYLN---FDVYDLELT 71 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~~~---~~~~~~~~~ 71 (204)
-++|.|++|+||||+++.|++.++ .++..++..
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 478999999999999999999874 456665543
No 490
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0037 Score=47.36 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.9
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+...
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999998864
No 491
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.98 E-value=0.007 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.5
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
+.++|+||+|||||++++++..
T Consensus 182 V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999998753
No 492
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0059 Score=56.14 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=17.7
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
-+++.||||||||+++..+...
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999987666543
No 493
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=95.95 E-value=0.0061 Score=51.72 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=28.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHhc---CCceEEeecCC
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNYL---NFDVYDLELTT 72 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~~---~~~~~~~~~~~ 72 (204)
.++++.|++|+|||++++.+...+ |.+++.+|...
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkg 91 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG 91 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 469999999999999987776654 77888888754
No 494
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.94 E-value=0.0039 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.8
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
..|+||+|+|||+++.+|+...
T Consensus 29 ~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 29 TGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHhc
Confidence 6799999999999999998744
No 495
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.92 E-value=0.0033 Score=46.38 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=20.0
Q ss_pred eeEEECCCCCcHHHHHHHHHHh
Q 041769 39 SYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~~ 60 (204)
.+++.|++|+|||+|++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999864
No 496
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.92 E-value=0.0024 Score=46.95 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=9.6
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
..+++.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34899999999999999998754
No 497
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.92 E-value=0.004 Score=46.59 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.7
Q ss_pred ceeEEECCCCCcHHHHHHHHHHh
Q 041769 38 HSYFLYGPPGTGKSSLIAAMTNY 60 (204)
Q Consensus 38 ~g~ll~Gp~GtGKT~la~~la~~ 60 (204)
..+++.|++|+|||+|++.+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34999999999999999998854
No 498
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.91 E-value=0.0043 Score=51.09 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=19.5
Q ss_pred eEEECCCCCcHHHHHHHHHHhc
Q 041769 40 YFLYGPPGTGKSSLIAAMTNYL 61 (204)
Q Consensus 40 ~ll~Gp~GtGKT~la~~la~~~ 61 (204)
.+|+||+|+|||+++.||...+
T Consensus 26 ~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999987655
No 499
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.90 E-value=0.0034 Score=47.15 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.9
Q ss_pred eeEEECCCCCcHHHHHHHHHH
Q 041769 39 SYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 39 g~ll~Gp~GtGKT~la~~la~ 59 (204)
-+++.|++|+|||+|++.+.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999864
No 500
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.90 E-value=0.014 Score=51.22 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=30.4
Q ss_pred cCChhHHHHHHHHHHHHHHhHHHHHHhCCCCCceeEEECCCCCcHHHHHHHHHH
Q 041769 6 AMDSNMKQMIMDDLERFVKRKEFYRNVGKAWKHSYFLYGPPGTGKSSLIAAMTN 59 (204)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ll~Gp~GtGKT~la~~la~ 59 (204)
+|.+..++++.+.+... +-...+.+.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 36666666665555321 111234588999999999999999996
Done!