BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041772
         (188 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LOD|A Chain A, The Crystal Structure Of The Putative Acyl-Coa
          N-Acyltransferase From Klebsiella Pneumoniae
          Subsp.Pneumoniae Mgh 78578
          Length = 162

 Score = 26.9 bits (58), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 47 FLLNNFTLPPDKALAVYIQSPGSPFLYCGAVTVA 80
           LL+   LPP   +A+ I+SP    + CGA+ ++
Sbjct: 37 HLLDLSQLPPQTVIALAIRSPQGEAVGCGAIVLS 70


>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
           In Complex With A Maltohexaose Inhibitor
 pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
           Thermosulfurigenes Em1 At Ph 8.0
          Length = 683

 Score = 26.9 bits (58), Expect = 6.6,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 11  FPMDISTFSQIDTFHWILDMNSFVGEAYDQVRDMCIFLLNNFTLPPDKALAVYIQSPGSP 70
           + +D    S    +++I DM +F+        DM  F     T P ++ALA  + S G P
Sbjct: 302 YGLDSMIQSTASDYNFINDMVTFIDN-----HDMDRFYNGGSTRPVEQALAFTLTSRGVP 356

Query: 71  FLYCG 75
            +Y G
Sbjct: 357 AIYYG 361


>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
           Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
 pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
           Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
           Complexed With A Maltoheptaose Inhibitor
          Length = 683

 Score = 26.9 bits (58), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 11  FPMDISTFSQIDTFHWILDMNSFVGEAYDQVRDMCIFLLNNFTLPPDKALAVYIQSPGSP 70
           + +D    S    +++I DM +F+        DM  F     T P ++ALA  + S G P
Sbjct: 302 YGLDSMIQSTASDYNFINDMVTFIDN-----HDMDRFYNGGSTRPVEQALAFTLTSRGVP 356

Query: 71  FLYCG 75
            +Y G
Sbjct: 357 AIYYG 361


>pdb|4HZ6|A Chain A, Crystal Structure Of Bglb
 pdb|4HZ7|A Chain A, Crystal Structure Of Bglb With Glucose
 pdb|4HZ8|A Chain A, Crystal Structure Of Bglb With Natural Substrate
          Length = 444

 Score = 26.6 bits (57), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 2   FGVVFPNRSFPMDISTFSQIDTFHWILDMNSFVGEAYDQVRDMCIFLLNNFTLPPDKALA 61
           F  ++P  + P D+    ++ +F   L +   +   Y+Q   M    L  F  P D    
Sbjct: 223 FNTIYPVSAEPADVEAARRMHSFQNELFLEPLIRGQYNQATLMAYPNLPEFIAPED---- 278

Query: 62  VYIQSPGSPFLYCGAVTVARPSAVLSLPWPEPG 94
             +Q+  +P  + G V    P  V S P P PG
Sbjct: 279 --MQTISAPIDFLG-VNYYNPMRVKSSPQP-PG 307


>pdb|3CMJ|A Chain A, Crystal Structure Of Engineered Beta-Glucosidase From Soil
           Metagenome
          Length = 465

 Score = 26.6 bits (57), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 2   FGVVFPNRSFPMDISTFSQIDTFHWILDMNSFVGEAYDQVRDMCIFLLNNFTLPPDKALA 61
           F  ++P  + P D+    ++ +F   L +   +   Y+Q   M    L  F  P D    
Sbjct: 244 FNTIYPVSAEPADVEAARRMHSFQNELFLEPLIRGQYNQATLMAYPNLPEFIAPED---- 299

Query: 62  VYIQSPGSPFLYCGAVTVARPSAVLSLPWPEPG 94
             +Q+  +P  + G V    P  V S P P PG
Sbjct: 300 --MQTISAPIDFLG-VNYYNPMRVKSSPQP-PG 328


>pdb|3O5V|A Chain A, The Crystal Structure Of The CreatinasePROLIDASE
          N-Terminal Domain Of An X-Pro Dipeptidase From
          Streptococcus Pyogenes To 1.85a
 pdb|3O5V|B Chain B, The Crystal Structure Of The CreatinasePROLIDASE
          N-Terminal Domain Of An X-Pro Dipeptidase From
          Streptococcus Pyogenes To 1.85a
          Length = 132

 Score = 26.6 bits (57), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 47 FLLNNFTLPPDKALAVYIQSPGSPFLYCGAVTVARPSAVLSLP 89
          +L   F  P ++ L +++    +P L+  A+ VAR S  +S P
Sbjct: 30 YLTGFFCDPHERQLFLFVYHDLAPVLFVPALEVARASQAISFP 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,824,566
Number of Sequences: 62578
Number of extensions: 232604
Number of successful extensions: 623
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 8
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)