BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041772
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60175|OPI10_SCHPO Protein OPI10 homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPBC21H7.06c PE=3 SV=1
Length = 200
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 37/207 (17%)
Query: 1 MFGVVFPNRSFPMDISTFSQIDTFHWILDMNSFVGEAYDQVRDMCIFLLNNFTLPPDKAL 60
MFG + R + + Q+ ++ ++S + + + +FLL N P
Sbjct: 1 MFGAICAGR---LVQTNLQQVADNQFVFQLDS-----AESLNHIVVFLLPNSPFPVGMGA 52
Query: 61 AVYIQSPGSPFLYCGAVTVARPSAVLSLPWPEPGGGMQLTAPDST--PLSAKIGVSVEDL 118
VY Q PG PF + G +T +PSA+ L +Q + + ++A +G+SVE L
Sbjct: 53 KVYFQWPGKPFQFLGYLTNEKPSAIFRL-----KNTIQTLSENENCVGITAMLGISVEPL 107
Query: 119 TSL---PSLDVTAEKRIER-------LAMKVGENLFNFMQSFCG------------VDGS 156
T+ P++ +A I + +A K+ NL+NF+ SF + +
Sbjct: 108 TNFTETPAVSTSASNVIAKPLPPVTSVAQKILTNLYNFLASFATSQLPPNSIGLGDLRPN 167
Query: 157 KLIVPMDILDRWFKKFQEKAKRDPEYL 183
+P+ + W KF K +P +L
Sbjct: 168 DTFIPLRVFQDWHAKFLNKLSNNPNFL 194
>sp|Q568T4|HIKES_DANRE Protein Hikeshi OS=Danio rerio GN=zgc:110091 PE=2 SV=2
Length = 197
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 38 YDQVRDMCIFLLNNFTLPPDKALAVYIQSPGSP----FLYCGAVTVARPSAVLSLPWPEP 93
Y+ V + +FLL P AVY+ PG + G +T +PSA+ + +
Sbjct: 30 YEHVNHVVVFLLGTVPFPEGLGGAVYLCVPGGAAGQVWQLLGFITNEKPSAIFRISGLKA 89
Query: 94 GGGMQ-----LTAPDSTPLSAKIGVSVEDL------TSLPSLDVTAEKRIERLAMKVGEN 142
G G + AP + P A++GVSVE L T + S V+ + K+ ++
Sbjct: 90 GEGSSHPFGMMDAP-AAPSMAQVGVSVEGLHLLAQQTPVSSSAVSTLDSFTQFTQKMLDS 148
Query: 143 LFNFMQSFC------GVDGSKLIVPMDILDRWFKKFQEKAKRDPEYLK 184
LFNF SF + S++ +P + RW++ FQ + ++P + K
Sbjct: 149 LFNFTSSFALSQSQMSPNPSEMFIPASSIRRWYENFQRRLMQNPNFWK 196
>sp|Q5M808|HIKES_RAT Protein Hikeshi OS=Rattus norvegicus PE=2 SV=2
Length = 197
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 20/167 (11%)
Query: 38 YDQVRDMCIFLLNNFTLPPDKALAVYIQSPGSP----FLYCGAVTVARPSAVLSLPWPEP 93
Y+ + + +F+L P +VY P S + G VT +PSA+ + +
Sbjct: 30 YENINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGVPVWQLLGFVTNGKPSAIFKISGLKS 89
Query: 94 GGGMQ--LTAPD--STPLSAKIGVSVEDLTSLP------SLDVTAEKRIERLAMKVGENL 143
G G Q A + TP A+IG+SVE L SL S V++ + K+ +N
Sbjct: 90 GEGSQHPFGAMNIVRTPSVAQIGISVELLDSLAQQTPVGSAAVSSVDSFTQFTQKMLDNF 149
Query: 144 FNFMQSFCGVDG------SKLIVPMDILDRWFKKFQEKAKRDPEYLK 184
+NF SF S++ +P +++ +W++ FQ + ++P + K
Sbjct: 150 YNFASSFALSQAQMTPNPSEMFIPANVVLKWYENFQRRLAQNPLFWK 196
>sp|Q9DD02|HIKES_MOUSE Protein Hikeshi OS=Mus musculus GN=L7rn6 PE=2 SV=1
Length = 197
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 20/167 (11%)
Query: 38 YDQVRDMCIFLLNNFTLPPDKALAVYIQSPGSP----FLYCGAVTVARPSAVLSLPWPEP 93
Y+ + + +F+L P +VY P S + G VT +PSA+ + +
Sbjct: 30 YENINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGVPVWQLLGFVTNGKPSAIFKISGLKS 89
Query: 94 GGGMQ--LTAPD--STPLSAKIGVSVEDLTSLP------SLDVTAEKRIERLAMKVGENL 143
G G Q A + TP A+IG+SVE L SL S V++ + K+ +N
Sbjct: 90 GEGSQHPFGAMNIVRTPSVAQIGISVELLDSLAQQTPVGSAAVSSVDSFTQFTQKMLDNF 149
Query: 144 FNFMQSFCGVDG------SKLIVPMDILDRWFKKFQEKAKRDPEYLK 184
+NF SF S++ +P +++ +W++ FQ + ++P + K
Sbjct: 150 YNFASSFALSQAQMTPNPSEMFIPANVVLKWYENFQRRLAQNPLFWK 196
>sp|Q56JY0|HIKES_BOVIN Protein Hikeshi OS=Bos taurus PE=2 SV=1
Length = 197
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 38 YDQVRDMCIFLLNNFTLPPDKALAVYIQSPGSPFL----YCGAVTVARPSAVLSLPWPEP 93
Y+ + + +F+L P +VY P S + G VT +PSA+ + +
Sbjct: 30 YENINHVVVFMLGTVPFPEGMGGSVYFSYPDSNGMPVWQLLGFVTNGKPSAIFKISGLKS 89
Query: 94 GGGMQ----LTAPDSTPLSAKIGVSVEDLTSLP------SLDVTAEKRIERLAMKVGENL 143
G G Q TP A+IG+SVE L SL + V++ + K+ +N
Sbjct: 90 GEGSQHPFGTMNIVRTPSVAQIGISVELLDSLAQQTPVGNAAVSSVDSFTQFTQKMLDNF 149
Query: 144 FNFMQSFCGVDG------SKLIVPMDILDRWFKKFQEKAKRDPEYLK 184
+NF SF S++ +P +++ +W++ FQ + ++P + K
Sbjct: 150 YNFASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQRRLAQNPLFWK 196
>sp|Q53FT3|HIKES_HUMAN Protein Hikeshi OS=Homo sapiens GN=C11orf73 PE=1 SV=2
Length = 197
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 20/167 (11%)
Query: 38 YDQVRDMCIFLLNNFTLPPDKALAVYIQSPGSPFL----YCGAVTVARPSAVLSLPWPEP 93
Y+ + + +F+L P +VY P S + G VT +PSA+ + +
Sbjct: 30 YESINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGMPVWQLLGFVTNGKPSAIFKISGLKS 89
Query: 94 GGGMQ--LTAPD--STPLSAKIGVSVEDLTSLP------SLDVTAEKRIERLAMKVGENL 143
G G Q A + TP A+IG+SVE L S+ + V++ + K+ +N
Sbjct: 90 GEGSQHPFGAMNIVRTPSVAQIGISVELLDSMAQQTPVGNAAVSSVDSFTQFTQKMLDNF 149
Query: 144 FNFMQSFCGVDG------SKLIVPMDILDRWFKKFQEKAKRDPEYLK 184
+NF SF S++ +P +++ +W++ FQ + ++P + K
Sbjct: 150 YNFASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQRRLAQNPLFWK 196
>sp|Q5ZK09|HIKES_CHICK Protein Hikeshi OS=Gallus gallus GN=RCJMB04_13p7 PE=2 SV=2
Length = 197
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%)
Query: 38 YDQVRDMCIFLLNNFTLPPDKALAVYI----QSPGSPFLYCGAVTVARPSAVLSLPWPEP 93
Y+ + + +F+L P +VY QS + + G VT +PSA+ + +
Sbjct: 30 YENINHVVVFMLGTVPFPEGMGGSVYFCYPDQSGMAVWQLLGFVTNEKPSAIFKISGLKS 89
Query: 94 GGGMQ-----LTAPDSTPLSAKIGVSVEDLTSL------PSLDVTAEKRIERLAMKVGEN 142
G G Q + P TP A+IG+SVE L +L + V++ K+ +N
Sbjct: 90 GKGSQHPFGAMNLPQ-TPTVAQIGISVELLENLVQQTPVANAAVSSVDSFTEFTQKMLDN 148
Query: 143 LFNFMQSFCGVDG------SKLIVPMDILDRWFKKFQEKAKRDPEYLK 184
+NF SF S+ +P +++ +W++ FQ + ++P + K
Sbjct: 149 FYNFASSFAVTQAQMTPNPSEAFIPANVVLKWYENFQRRLTQNPLFWK 196
>sp|A4IGP0|HIKES_XENTR Protein Hikeshi OS=Xenopus tropicalis PE=2 SV=1
Length = 197
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 38 YDQVRDMCIFLLNNFTLPPDKALAVYIQSP---GSP-FLYCGAVTVARPSAVLSLPWPEP 93
Y+ + + +F+L P +VY P G P + G +T +PSA+ + +
Sbjct: 30 YESINHVVVFMLGTVPFPERMGGSVYFSYPDQSGMPVWTLLGFITNEKPSAIFKISGLKS 89
Query: 94 GGGMQ-----LTAPDSTPLSAKIGVSVEDL------TSLPSLDVTAEKRIERLAMKVGEN 142
G G Q + P TP A+IG+SVE L T + + V+ + K+ +N
Sbjct: 90 GEGSQHPFGTMNIPQ-TPSVAQIGISVELLEQMAQQTPVANAAVSTIDSFTQFTQKMLDN 148
Query: 143 LFNFMQSFCGVDG------SKLIVPMDILDRWFKKFQEKAKRDPEYLK 184
+NF SF S++ +P +++ +W++ FQ + ++P + K
Sbjct: 149 FYNFATSFAVSQAQMTPNPSEVFIPSNVVLKWYENFQRRMAQNPFFWK 196
>sp|Q6DCU7|HIKES_XENLA Protein Hikeshi OS=Xenopus laevis PE=2 SV=1
Length = 197
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 38 YDQVRDMCIFLLNNFTLPPDKALAVYIQSP---GSP-FLYCGAVTVARPSAVLSLPWPEP 93
++ + + +F+L P +VY P G P + G +T +PSA+ + +
Sbjct: 30 FESINHVVVFMLGTVPFPERMGGSVYFSFPDQTGMPVWTLLGFITNEKPSAIFKISGLKS 89
Query: 94 GGGMQ-----LTAPDSTPLSAKIGVSVEDL------TSLPSLDVTAEKRIERLAMKVGEN 142
G G Q + P TP A+IG+SVE L T + + V+ + K+ +N
Sbjct: 90 GEGSQHPFGTMNLPQ-TPSVAQIGISVELLEQMAQQTPVANAAVSTVDSFTQFTQKMLDN 148
Query: 143 LFNFMQSFCGVDG------SKLIVPMDILDRWFKKFQEKAKRDPEYLK 184
+NF SF S++ +P +++ +W++ FQ + ++P + K
Sbjct: 149 FYNFATSFAVSQAQMIPNPSEVFIPSNVVLKWYENFQRRMAQNPFFWK 196
>sp|Q16RI1|OPI10_AEDAE Protein OPI10 homolog OS=Aedes aegypti GN=AAEL010953 PE=3 SV=1
Length = 199
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 29/203 (14%)
Query: 3 GVVFPNRSFPMDISTFSQIDTFHWILDMNSFVGEAYDQVRDMCIFLLNNFTLPPDKALAV 62
GV+ R D F QI ++++ + EA D V + +FL A AV
Sbjct: 6 GVICSGRLVQTD---FQQISEVQYLIN----IPEA-DNVNHVVVFLTGTTPFAEGMAGAV 57
Query: 63 YIQ--SPGSP--FLYCGAVTVARPSAVLSLPWPEPGGGMQLTAP-----DSTPLS--AKI 111
Y P +P + + G ++ ++PSA+ + + M + + P+S A+I
Sbjct: 58 YFSWPDPNAPPTWQFLGYISNSKPSAIFKISQLKKLDEMSNNSAVNVFGANLPISHIAQI 117
Query: 112 GVSVEDLTSL--PSLDVTAEKRIERLAMKVGENLFNFMQSFCGVDGSKLI-------VPM 162
GVS+E ++L + T + K+ EN FNF+ SF V S+++ VP+
Sbjct: 118 GVSIEPESNLMQQTPATTTTDTYYQFGQKMVENFFNFVSSFS-VTQSQMMPNPNEAFVPL 176
Query: 163 DILDRWFKKFQEKAKRDPEYLKG 185
+ WF FQ + +++P + K
Sbjct: 177 STVQTWFTNFQRRLQQNPSFWKS 199
>sp|Q9W0C7|OPI10_DROME Protein OPI10 homolog OS=Drosophila melanogaster GN=CG13926 PE=3
SV=1
Length = 197
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 24/167 (14%)
Query: 39 DQVRDMCIFLLNNFTLPPDKALAVYIQSPGS----PFLYCGAVTVARPSAVLSLPWPEPG 94
+ V + +FL LP + A+Y P + + Y G + +PSA+ + +
Sbjct: 33 ESVNYLVVFLTGVSPLPVGTSAAIYFSWPDANAAPTWQYLGHINNTKPSAIFKIAQLKKS 92
Query: 95 GGMQLTAPD----STPLS--AKIGVSVE-DLT---SLPSLDVTAEKRIERLAMKVGENLF 144
++ A S +S A+IGVS+E +LT P++ + + + ++ EN F
Sbjct: 93 HELEAQAHGMVFGSQEISHIAQIGVSLEPELTVAQQTPAVSTANDNK--QFGQRMLENFF 150
Query: 145 NFMQSFCGVDG-------SKLIVPMDILDRWFKKFQEKAKRDPEYLK 184
N+ SF GV S+ VP ++ W+ FQ + +++P + K
Sbjct: 151 NYASSF-GVAARDIPPISSETFVPFSVVQNWYTNFQRRMEQNPNFWK 196
>sp|Q29E01|OPI10_DROPS Protein OPI10 homolog OS=Drosophila pseudoobscura pseudoobscura
GN=GA12631 PE=3 SV=1
Length = 194
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 20/165 (12%)
Query: 39 DQVRDMCIFLLNNFTLPPDKALAVYIQSPGS----PFLYCGAVTVARPSAVLSLPWPEPG 94
+ V + +FL LP + A+Y P + + Y G + +PSA+ + + G
Sbjct: 31 ESVNYIVVFLTGTTPLPIGTSAAIYFSWPDACAAPTWQYLGHIGNNKPSAIFKIAQLKKG 90
Query: 95 -------GGMQLTAPDSTPLSAKIGVSVEDLTSLPSLD--VTAEKRIERLAMKVGENLFN 145
GM + + + A+IG+S+E ++ V+ + ++ EN FN
Sbjct: 91 HELGTQANGMVFGTQEISHI-AQIGISIEPELAVAQQTPAVSNANDNKHFGQRMVENFFN 149
Query: 146 FMQSFCGVDG------SKLIVPMDILDRWFKKFQEKAKRDPEYLK 184
++ S+C ++ VP ++ W+ FQ + ++P +LK
Sbjct: 150 YVSSYCVSPQDIPPAVTESFVPFYVVKNWYANFQRRMDQNPNFLK 194
>sp|Q7PRB5|OPI10_ANOGA Protein OPI10 homolog OS=Anopheles gambiae GN=AGAP002426 PE=3 SV=3
Length = 201
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 29/205 (14%)
Query: 2 FGVVFPNRSFPMDISTFSQIDTFHWILDMNSFVGEAYDQVRDMCIFLLNNFTLPPDKALA 61
GV+ R D F QI H+++ + D V + +FL P A
Sbjct: 5 LGVIVSGRLVQTD---FQQISDSHFLITI-----PDADNVNHVVVFLTGTTPFPDGMAGG 56
Query: 62 VYIQ--SPGSP--FLYCGAVTVARPSAVLSLP----WPEPGGG---MQLTAPDSTPLS-- 108
VY P +P + G ++ +PSA+ + E G M + P+S
Sbjct: 57 VYFSWPDPNAPPNWQLLGYISNTKPSAIFKISQLKKLDEIAGQSTMMNNVFGSNLPISHI 116
Query: 109 AKIGVSVEDLTSL--PSLDVTAEKRIERLAMKVGENLFNFMQSFCGVDG------SKLIV 160
A+IGVS+E +SL + T + K+ EN FNF+ SF ++ V
Sbjct: 117 AQIGVSIEPESSLVQQTPSTTTSSTYYQFGQKIVENFFNFVSSFSITQSQMTPAPNETFV 176
Query: 161 PMDILDRWFKKFQEKAKRDPEYLKG 185
P+ + W+ F+ + +++P + K
Sbjct: 177 PLSTVQTWYTNFERRLQQNPNFWKN 201
>sp|Q54TH5|OPI10_DICDI Protein OPI10 homolog OS=Dictyostelium discoideum GN=DDB_G0281747
PE=3 SV=1
Length = 217
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 130 KRIERLAMKVGENLFNFMQSFCGVDGSKLIVPMDILDRWFKKFQEKAKRD 179
+ +++A K+ +NL N++ SF + + VP +++W++ FQ+K K D
Sbjct: 165 EEFKQVAFKLCDNLVNYILSFSTSNNT---VPSSSINKWYENFQKKLKND 211
>sp|Q08202|OPI10_YEAST Protein OPI10 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=OPI10 PE=1 SV=1
Length = 246
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 75/204 (36%), Gaps = 67/204 (32%)
Query: 44 MCIFLLNNFTLPPDKALAVYIQ-SPGSPFLYCGAVTVARPSAVLSLPWP----------- 91
+ +F+L N T P D VY + SP F G ++ +PSA+ + P
Sbjct: 40 ITLFILPNVTFPQDYIATVYFKLSPQEEFKLFGYLSSEKPSAIFKVQIPSSKKDAGDTSD 99
Query: 92 ---------EPGGGMQLTAPDSTPLSAK------IGVSVED------------------- 117
+ G G D+ S+ IG+S+E
Sbjct: 100 GLGEIDMDVDDGSGAADPFTDTNGSSSNNISELIIGISIEPREQGMMKLEEWKASMNAEA 159
Query: 118 ------LTSLPSL----DVTAEKRI--------ERLAMKVGENLFNFMQSFCGVDGSKLI 159
+ S P+L ++T ++ + LA K+ ++ +N++ F G+
Sbjct: 160 QKNNSLILSRPNLGIIRNITTAGQLAQVYPSLTQELAAKIVQHAYNYLSGFLDAQGN--- 216
Query: 160 VPMDILDRWFKKFQEKAKRDPEYL 183
VP+ D W+ KF+ + D +L
Sbjct: 217 VPIKRFDTWWDKFRNRLANDGTFL 240
>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate proteoglycan core protein
OS=Homo sapiens GN=HSPG2 PE=1 SV=4
Length = 4391
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 104 STPLSAKIGVSVEDLTSLPSLDVTAEKRIERLAMKVGE 141
S PL A + V++E S+P+L VT RIE + +V E
Sbjct: 2413 SVPLEASVLVTIEPAGSVPALGVTPTVRIESSSSQVAE 2450
>sp|B3DK56|PTPRU_DANRE Receptor-type tyrosine-protein phosphatase U OS=Danio rerio GN=ptpru
PE=2 SV=1
Length = 1444
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 54 LPPDKALAVYIQSPGSPFLYCGAV---TVARPSAVLSLPWPEPG 94
LPPD+ALA + + G Y A + RP+A + P P PG
Sbjct: 1211 LPPDRALAFLVTTEGESNNYINAALMDSFHRPAAFIVTPHPLPG 1254
>sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus GN=SSPO PE=2 SV=2
Length = 5146
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 82 PSAVLSLPWPEPGGGMQLTAPDSTPLSAKIGVSVEDLTSLP 122
P+++ S P P PGG +Q P S P + + + +T LP
Sbjct: 2318 PASLGSEPHPSPGGSVQTVTPTSQPEAQALRPEMAAVTVLP 2358
>sp|B3QM27|RUVB_CHLP8 Holliday junction ATP-dependent DNA helicase RuvB OS=Chlorobaculum
parvum (strain NCIB 8327) GN=ruvB PE=3 SV=1
Length = 342
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 92 EPGGGMQLTAPDSTPLSAKIGVSVEDLTSLPSLDVTAEKRIERLAMKVGENLFNFMQSF 150
E GGG+++T S PL K G LTSL D+ I RLA V E L++ M+ +
Sbjct: 76 EMGGGIKIT---SGPLIDKAGNLAGLLTSLKKGDILFIDEIHRLAPAVEEYLYSAMEDY 131
>sp|P31835|CDGT2_PAEMA Cyclomaltodextrin glucanotransferase OS=Paenibacillus macerans PE=1
SV=1
Length = 713
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 22 DTFHWILDMNSFV---GEAYDQVRDMCIFLLNN----------FTLPPDKALAVYIQSPG 68
D + D+NS + G +Y+ + +M F+ N+ T P ++ALAV + S G
Sbjct: 323 DKSETMTDLNSVISSTGSSYNYINNMVTFIDNHDMDRFQQAGASTRPTEQALAVTLTSRG 382
Query: 69 SPFLYCG 75
P +Y G
Sbjct: 383 VPAIYYG 389
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,555,776
Number of Sequences: 539616
Number of extensions: 3056291
Number of successful extensions: 8525
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 8502
Number of HSP's gapped (non-prelim): 30
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)