Query 041772
Match_columns 188
No_of_seqs 111 out of 192
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 17:58:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ou1_A Apolipoprotein A-II; hi 62.6 1.4 4.9E-05 30.4 -0.2 21 132-152 49-69 (77)
2 2f3y_B Voltage-dependent L-typ 28.4 33 0.0011 19.0 1.8 15 164-178 7-21 (26)
3 2l1p_A DNA-binding protein SAT 27.5 22 0.00077 25.0 1.2 13 162-174 66-78 (83)
4 3flj_A Uncharacterized protein 26.9 30 0.001 26.5 2.0 28 158-185 123-150 (155)
5 1j03_A Putative steroid bindin 25.3 22 0.00074 25.5 0.9 16 162-177 80-95 (102)
6 1n6z_A Hypothetical 12.3 kDa p 25.1 52 0.0018 23.9 2.8 22 162-183 50-72 (105)
7 1loi_A Cyclic 3',5'-AMP specif 23.4 13 0.00044 20.2 -0.5 10 165-174 16-25 (26)
8 3gdz_A Arginyl-tRNA synthetase 22.8 41 0.0014 24.0 2.0 50 131-182 57-108 (109)
9 3ghf_A Septum site-determining 20.0 43 0.0015 24.5 1.6 28 158-185 20-47 (120)
10 1uzc_A Hypothetical protein FL 20.0 53 0.0018 22.0 1.9 15 169-183 36-50 (71)
11 2lon_A HIG1 domain family memb 24.9 23 0.00078 25.6 0.0 22 161-182 8-31 (99)
No 1
>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A
Probab=62.63 E-value=1.4 Score=30.39 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhhccccc
Q 041772 132 IERLAMKVGENLFNFMQSFCG 152 (188)
Q Consensus 132 ~~~~A~ki~~nlfNyl~SF~~ 152 (188)
..-|++|.+.|++||++||..
T Consensus 49 ltPlvkkagTdl~nFlS~~~~ 69 (77)
T 2ou1_A 49 LTPLIKKAGTELVNFLSYFVE 69 (77)
T ss_dssp TSHHHHTHHHHTTC-CHHHHH
T ss_pred HhHHHHHhhhHHHHHHHHHcC
Confidence 445999999999999999964
No 2
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=28.40 E-value=33 Score=18.97 Aligned_cols=15 Identities=20% Similarity=0.857 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhc
Q 041772 164 ILDRWFKKFQEKAKR 178 (188)
Q Consensus 164 ~~~~W~~kF~~Kl~~ 178 (188)
.+++||++|.+|-+.
T Consensus 7 LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 7 LIQEYFRKFKKRKEQ 21 (26)
T ss_pred hHHHHHHHHHHhHHh
Confidence 578999999988654
No 3
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=27.49 E-value=22 Score=24.99 Aligned_cols=13 Identities=31% Similarity=0.945 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHH
Q 041772 162 MDILDRWFKKFQE 174 (188)
Q Consensus 162 ~~~~~~W~~kF~~ 174 (188)
.++|++||.+|.+
T Consensus 66 Ak~fg~w~~~~~~ 78 (83)
T 2l1p_A 66 CQEFGRWYKHFKK 78 (83)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 4689999999864
No 4
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}
Probab=26.94 E-value=30 Score=26.54 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=23.7
Q ss_pred eEEehHHHHHHHHHHHHHHhcCcccccc
Q 041772 158 LIVPMDILDRWFKKFQEKAKRDPEYLKG 185 (188)
Q Consensus 158 ~~VP~~~~~~W~~kF~~Kl~~dP~Fl~~ 185 (188)
++=|++.++.=.++.-.||.+||.|++-
T Consensus 123 m~rP~k~l~al~~~m~~~l~~~~~~~~~ 150 (155)
T 3flj_A 123 VMRPYKTVGALRDAMNARVMTDARFLKY 150 (155)
T ss_dssp EEECHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred EEChHHHHHHHHHHHHHHHcCCchhhhh
Confidence 5568899999999999999999998864
No 5
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=25.32 E-value=22 Score=25.51 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHh
Q 041772 162 MDILDRWFKKFQEKAK 177 (188)
Q Consensus 162 ~~~~~~W~~kF~~Kl~ 177 (188)
++.++.|.++|++|+.
T Consensus 80 ~~~l~~W~~~f~~kY~ 95 (102)
T 1j03_A 80 INTLNDWETKFEAKYP 95 (102)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhccCC
Confidence 5799999999998863
No 6
>1n6z_A Hypothetical 12.3 kDa protein in ZDS2-URA5 intergenic region; structural proteomics, structural genomics, OCSP, NESG; NMR {Saccharomyces cerevisiae} SCOP: d.263.1.1
Probab=25.13 E-value=52 Score=23.89 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHhc-Ccccc
Q 041772 162 MDILDRWFKKFQEKAKR-DPEYL 183 (188)
Q Consensus 162 ~~~~~~W~~kF~~Kl~~-dP~Fl 183 (188)
++.++.|++||..++.- |-+..
T Consensus 50 ~d~lN~~FDkFDE~I~iPNEghI 72 (105)
T 1n6z_A 50 LDELNTWFDKFDAEICIPNEGHI 72 (105)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCE
T ss_pred HHHHHHHHHhhccceecCCCCce
Confidence 56799999999999875 44443
No 7
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=23.41 E-value=13 Score=20.23 Aligned_cols=10 Identities=30% Similarity=0.959 Sum_probs=7.5
Q ss_pred HHHHHHHHHH
Q 041772 165 LDRWFKKFQE 174 (188)
Q Consensus 165 ~~~W~~kF~~ 174 (188)
+-.||+.|+|
T Consensus 16 lvgwwdqfkr 25 (26)
T 1loi_A 16 LVGWWDQFKR 25 (26)
T ss_dssp GGGGHHHHTC
T ss_pred hhhhHHHhcc
Confidence 4569999875
No 8
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=22.78 E-value=41 Score=23.99 Aligned_cols=50 Identities=10% Similarity=0.001 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhh--hhcccccCCCCeeEEehHHHHHHHHHHHHHHhcCccc
Q 041772 131 RIERLAMKVGENLFN--FMQSFCGVDGSKLIVPMDILDRWFKKFQEKAKRDPEY 182 (188)
Q Consensus 131 ~~~~~A~ki~~nlfN--yl~SF~~~~~~~~~VP~~~~~~W~~kF~~Kl~~dP~F 182 (188)
.-.++|++|+++|=. ++++.....+| |+-+..=+.||.+.-+++..|+.|
T Consensus 57 ~P~~iA~~i~~~l~~~~~i~~vevagpG--FINf~l~~~~~~~~l~~il~~~~l 108 (109)
T 3gdz_A 57 APRQLAEQVLSHLDLNGIANKVEIAGPG--FINIFLDPAFLADNVNRALQSERL 108 (109)
T ss_dssp CHHHHHHHHHHHCCCTTTEEEEEEETTT--EEEEEECHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHhcCcCCcEeEEEEeCCC--eEEEEECHHHHHHHHHHHHhcccC
Confidence 346789988887632 33443333344 455555589999999999888764
No 9
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=20.03 E-value=43 Score=24.47 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=24.2
Q ss_pred eEEehHHHHHHHHHHHHHHhcCcccccc
Q 041772 158 LIVPMDILDRWFKKFQEKAKRDPEYLKG 185 (188)
Q Consensus 158 ~~VP~~~~~~W~~kF~~Kl~~dP~Fl~~ 185 (188)
..++-.-++.|.+...+|+++.|+|++.
T Consensus 20 l~l~~~d~~~l~~~L~~ki~~aP~FF~~ 47 (120)
T 3ghf_A 20 VHLHEAEPEVIRQALEDKIAQAPAFLKH 47 (120)
T ss_dssp EEEESCCHHHHHHHHHHHHHHSHHHHTT
T ss_pred EEeCCCCHHHHHHHHHHHHHhChHhhCC
Confidence 4556677999999999999999999875
No 10
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=20.00 E-value=53 Score=22.02 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCcccc
Q 041772 169 FKKFQEKAKRDPEYL 183 (188)
Q Consensus 169 ~~kF~~Kl~~dP~Fl 183 (188)
|++..+|+..||.|+
T Consensus 36 We~~~~~i~~DpRY~ 50 (71)
T 1uzc_A 36 WEQAMKMIINDPRYS 50 (71)
T ss_dssp HHHHHHHHHTSGGGG
T ss_pred HHHHHHHHccCcccc
Confidence 778889999999997
No 11
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=24.91 E-value=23 Score=25.63 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=17.0
Q ss_pred ehHHH--HHHHHHHHHHHhcCccc
Q 041772 161 PMDIL--DRWFKKFQEKAKRDPEY 182 (188)
Q Consensus 161 P~~~~--~~W~~kF~~Kl~~dP~F 182 (188)
++..+ +.+.+||.||++.||-.
T Consensus 8 ~~~~~~ees~~~K~~rk~ke~Plv 31 (99)
T 2lon_A 8 WVPPDDEDCVSEKLLRKTRESPLV 31 (99)
Confidence 34445 48999999999999843
Done!