Query 041772
Match_columns 188
No_of_seqs 111 out of 192
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 17:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041772.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041772hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n6za_ d.263.1.1 (A:) Hypothe 36.7 15 0.0011 25.0 3.4 28 157-184 40-73 (105)
2 d1t0ga_ d.120.1.2 (A:) Putativ 31.7 6.7 0.00049 27.1 0.9 16 162-177 87-102 (109)
3 d1uzca_ a.159.2.1 (A:) Hypa/FB 28.7 13 0.00098 23.1 1.9 16 169-184 34-49 (69)
4 d1hlva2 a.4.1.7 (A:67-131) DNA 23.4 56 0.0041 19.6 4.3 32 131-176 33-64 (65)
5 d2doda1 a.159.2.1 (A:651-719) 22.9 20 0.0015 22.2 2.0 15 169-183 31-45 (69)
6 d2dofa1 a.159.2.1 (A:888-959) 17.3 22 0.0016 22.1 1.2 14 169-182 31-44 (72)
7 d1o4ua2 d.41.2.1 (A:1-103) Qui 17.2 22 0.0016 23.3 1.2 20 130-149 84-103 (103)
8 d2doea1 a.159.2.1 (A:784-853) 16.8 25 0.0018 21.7 1.4 15 169-183 31-45 (70)
9 d2jn9a1 b.45.3.1 (A:2-97) Unch 16.2 23 0.0016 23.6 1.0 38 37-83 33-70 (96)
10 d1iufa2 a.4.1.7 (A:76-141) Ars 13.4 35 0.0026 20.7 1.4 12 166-177 53-64 (66)
No 1
>d1n6za_ d.263.1.1 (A:) Hypothetical protein Yml108w {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.73 E-value=15 Score=24.98 Aligned_cols=28 Identities=36% Similarity=0.739 Sum_probs=21.0
Q ss_pred eeEEe-----hHHHHHHHHHHHHHHhc-Cccccc
Q 041772 157 KLIVP-----MDILDRWFKKFQEKAKR-DPEYLK 184 (188)
Q Consensus 157 ~~~VP-----~~~~~~W~~kF~~Kl~~-dP~Fl~ 184 (188)
+.+.| ++.++.|++||..++.- |-+..|
T Consensus 40 el~lpf~vd~~D~lN~fFDkFDE~IaiPNEgHIK 73 (105)
T d1n6za_ 40 ELILPFNVDELDELNTWFDKFDAEICIPNEGHIK 73 (105)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHHHTTCCSCEE
T ss_pred hhcCccccccHHHHHHHHHhcccceecCCCCceE
Confidence 55666 67899999999999875 444443
No 2
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=31.71 E-value=6.7 Score=27.08 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHh
Q 041772 162 MDILDRWFKKFQEKAK 177 (188)
Q Consensus 162 ~~~~~~W~~kF~~Kl~ 177 (188)
++.+++|.++|++|+.
T Consensus 87 ~~~L~~W~~~f~~kY~ 102 (109)
T d1t0ga_ 87 INTLNDWETKFEAKYP 102 (109)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 5689999999998763
No 3
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.74 E-value=13 Score=23.10 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCccccc
Q 041772 169 FKKFQEKAKRDPEYLK 184 (188)
Q Consensus 169 ~~kF~~Kl~~dP~Fl~ 184 (188)
|+++.+|+.+||.|+-
T Consensus 34 W~~~~~~~~~DpRy~a 49 (69)
T d1uzca_ 34 WEQAMKMIINDPRYSA 49 (69)
T ss_dssp HHHHHHHHHTSGGGGG
T ss_pred HHHHHHHhccCcchhh
Confidence 6789999999999973
No 4
>d1hlva2 a.4.1.7 (A:67-131) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.36 E-value=56 Score=19.62 Aligned_cols=32 Identities=22% Similarity=0.605 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCCCeeEEehHHHHHHHHHHHHHH
Q 041772 131 RIERLAMKVGENLFNFMQSFCGVDGSKLIVPMDILDRWFKKFQEKA 176 (188)
Q Consensus 131 ~~~~~A~ki~~nlfNyl~SF~~~~~~~~~VP~~~~~~W~~kF~~Kl 176 (188)
...+-|+.+++.|- +..|..+ ..|.++|.+|.
T Consensus 33 ~i~~kA~~~a~~l~--~~~F~aS------------~GWL~rFK~Rh 64 (65)
T d1hlva2 33 ILKEKALRIAEELG--MDDFTAS------------NGWLDRFRRRR 64 (65)
T ss_dssp HHHHHHHHHHHHHT--CTTCCCC------------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC--CCCCCCC------------HHHHHHHHHhc
Confidence 45667777777762 3444422 47999999985
No 5
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.85 E-value=20 Score=22.20 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCcccc
Q 041772 169 FKKFQEKAKRDPEYL 183 (188)
Q Consensus 169 ~~kF~~Kl~~dP~Fl 183 (188)
|+++.+|+..||.|.
T Consensus 31 W~~~~~k~~~DpRy~ 45 (69)
T d2doda1 31 WEKELHKIVFDPRYL 45 (69)
T ss_dssp HHHHHHHHHTCSGGG
T ss_pred HHHHHHHhccCcccc
Confidence 678999999999984
No 6
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.29 E-value=22 Score=22.10 Aligned_cols=14 Identities=7% Similarity=0.389 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCccc
Q 041772 169 FKKFQEKAKRDPEY 182 (188)
Q Consensus 169 ~~kF~~Kl~~dP~F 182 (188)
|+.+.+++..||-|
T Consensus 31 W~~~~~~l~~DpRy 44 (72)
T d2dofa1 31 WSDTRRTLRKDHRW 44 (72)
T ss_dssp HHHHHHHHHHSSTH
T ss_pred HHHHHHHhcCCcch
Confidence 77999999999998
No 7
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=17.17 E-value=22 Score=23.25 Aligned_cols=20 Identities=20% Similarity=0.026 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHhhhhcc
Q 041772 130 KRIERLAMKVGENLFNFMQS 149 (188)
Q Consensus 130 ~~~~~~A~ki~~nlfNyl~S 149 (188)
....-.++|++.||.-+|||
T Consensus 84 a~~iL~~ER~~LN~Lq~lS~ 103 (103)
T d1o4ua2 84 TYKLLVAERTLLNVLSVMFS 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34566899999999999986
No 8
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.80 E-value=25 Score=21.66 Aligned_cols=15 Identities=33% Similarity=0.753 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCcccc
Q 041772 169 FKKFQEKAKRDPEYL 183 (188)
Q Consensus 169 ~~kF~~Kl~~dP~Fl 183 (188)
|+++..++..||-|.
T Consensus 31 W~~~~~~~~~DpRy~ 45 (70)
T d2doea1 31 WSKVKDKVESDPRYK 45 (70)
T ss_dssp HHHHHHHHTTSTHHH
T ss_pred HHHHHHHhccCHHHH
Confidence 679999999999884
No 9
>d2jn9a1 b.45.3.1 (A:2-97) Uncharacterized protein YkvR {Bacillus subtilis [TaxId: 1423]}
Probab=16.25 E-value=23 Score=23.62 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=29.8
Q ss_pred CCCCcceEEEEecCCCCCCCCceEEEEEEcCCCCceEeeeecCCCCc
Q 041772 37 AYDQVRDMCIFLLNNFTLPPDKALAVYIQSPGSPFLYCGAVTVARPS 83 (188)
Q Consensus 37 ~~~~v~hivVFLl~~~~~p~g~~a~VY~~~P~~~w~~LG~isn~KPS 83 (188)
..+..++|+|-| |-....++.|..+..|.|.|.|.--|
T Consensus 33 tsetYHDIavLL---------Ye~~FdV~vPE~~l~Frg~i~~y~TS 70 (96)
T d2jn9a1 33 TSETYHDIAVLL---------YEKTFNVEVPERDLAFRGEMTNYSTS 70 (96)
T ss_dssp CTTTHHHHTTCB---------SCSCEEEEETTTTEEEEEBCCSCSSC
T ss_pred cccchhhhhhhh---------hhcceeeecCcchhhhhhhhhhhhhh
Confidence 456677788777 33446788999999999999998765
No 10
>d1iufa2 a.4.1.7 (A:76-141) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=13.44 E-value=35 Score=20.68 Aligned_cols=12 Identities=17% Similarity=0.750 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHh
Q 041772 166 DRWFKKFQEKAK 177 (188)
Q Consensus 166 ~~W~~kF~~Kl~ 177 (188)
..|.+||++|..
T Consensus 53 ~GWL~rFK~Rh~ 64 (66)
T d1iufa2 53 NGWLEGFRKRHI 64 (66)
T ss_dssp SHHHHHHHHHTS
T ss_pred hHHHHHHHHHhc
Confidence 369999999974
Done!