BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041773
         (155 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
          And C5- Convertase Of Human Complement
 pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
          And C5- Convertase Of Human Complement
          Length = 509

 Score = 30.0 bits (66), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 13 QGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRI 49
          Q +GH++LYL LD S     N + +F      + DRI
Sbjct: 5  QRSGHLNLYLLLDASQSVSENDFLIFKESASLMVDRI 41


>pdb|2I6Q|A Chain A, Complement Component C2a
 pdb|2I6S|A Chain A, Complement Component C2a
          Length = 517

 Score = 28.9 bits (63), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 13 QGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRI 49
          Q +GH++LYL LD S     N + +F      + DRI
Sbjct: 13 QRSGHLNLYLLLDCSQSVSENDFLIFKESASLMVDRI 49


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.141    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,460,602
Number of Sequences: 62578
Number of extensions: 229809
Number of successful extensions: 288
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 2
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)