BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041773
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
GN=UBP13 PE=1 SV=1
Length = 1115
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Query: 1 RLILYPNGNKKGQGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRIKNEYLAIRYDD 60
R++++P GN H+S+YL + ++ P W + F+ V +++ N Y +IR +
Sbjct: 84 RILIFPKGN----NVDHLSMYLDVADAANLPYG-WSRYSQFSLAVVNQVNNRY-SIRKET 137
Query: 61 GAVIRLHSMKRECGIDKLIPLQAFKEPSNGYLVDDSCVFGAEIFVIK 107
+ ++ + + G +PL EP+ GYLV+D+ + AE+ V K
Sbjct: 138 QH--QFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRK 182
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
GN=UBP12 PE=1 SV=2
Length = 1116
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 1 RLILYPNGNKKGQGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRIKNEYLAIRYDD 60
R++++P GN H+S+YL + ++ P W + F+ V ++I Y +R +
Sbjct: 85 RILIFPKGN----NVDHLSMYLDVSDAASLPYG-WSRYAQFSLAVVNQIHTRY-TVRKET 138
Query: 61 GAVIRLHSMKRECGIDKLIPLQAFKEPSNGYLVDDSCVFGAEIFVIK 107
+ ++ + + G +PL +PS GYLV+D+ + AE+ V K
Sbjct: 139 QH--QFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRK 183
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 114 ALSIVKVPAQAGNILR--WKIPNFSDLRDPEYYSSEFNAGGREW 155
A ++ PA+ L+ W IPNFS ++YS F GG +W
Sbjct: 41 ASTVENQPAEDPPTLKFTWTIPNFSRQNTRKHYSDVFVVGGYKW 84
>sp|Q13077|TRAF1_HUMAN TNF receptor-associated factor 1 OS=Homo sapiens GN=TRAF1 PE=1 SV=1
Length = 416
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 2 LILYPNGNKKGQGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRIKNEYL--AIRYD 59
L LY NG+ G+ T H+SL++ + Y PW TF + D+ E+ A R D
Sbjct: 307 LRLYLNGDGTGKRT-HLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAIDAFRPD 365
Query: 60 --DGAVIRLHSMKR-ECGIDKLIPLQAFKEPSNGYLVDDS 96
+ R S G PL + P + Y+ DD+
Sbjct: 366 LSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDT 405
>sp|P39428|TRAF1_MOUSE TNF receptor-associated factor 1 OS=Mus musculus GN=Traf1 PE=1 SV=2
Length = 409
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 2 LILYPNGNKKGQGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRIKNEYL--AIRYD 59
L LY NG+ G+ T H+SL++ + Y PW TF + D+ E+ A R D
Sbjct: 300 LRLYLNGDGSGKKT-HLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAIDAFRPD 358
Query: 60 --DGAVIRLHSMKR-ECGIDKLIPLQAFKEPSNGYLVDDS 96
+ R S G PL + P + Y+ DD+
Sbjct: 359 LSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDT 398
>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC
OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1
Length = 1304
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 65 RLHSMKRECGIDKLIPLQAFKEPSNGYLVDDSCVFGAEIFVIKPTGKG 112
R +S G K I + +P G+LV+D+ + I +KP K
Sbjct: 1253 RFNSKSNSFGYPKFIGVSTLMDPDMGFLVNDTIILNVSILQLKPIKKS 1300
>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
Length = 750
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 13 QGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRI 49
Q +GH++LYL LD S + +E+F + + DRI
Sbjct: 249 QRSGHLNLYLLLDASQSVSKDDFEIFKDSASRMVDRI 285
>sp|A5EXU4|SYR_DICNV Arginine--tRNA ligase OS=Dichelobacter nodosus (strain VCS1703A)
GN=argS PE=3 SV=1
Length = 592
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 45 VQDRIKNEYLAIRYDDGAVIRLHSMKRECGIDKLIPLQAFKEPSNGYLVDDSCVFGAEIF 104
+QD + + + + + G IRL +D+ I ++ K+P NG + + A++F
Sbjct: 5 IQDGLGSALILVAKNHGIDIRL--------LDQAIEIERCKDPENGDFASNIALKYAKVF 56
Query: 105 VIKPTGKGEALSIVKVP 121
+KP + L +V VP
Sbjct: 57 KMKPRQLADEL-VVSVP 72
>sp|P50101|UBP15_YEAST Ubiquitin carboxyl-terminal hydrolase 15 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP15 PE=1
SV=1
Length = 1230
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 130 WKIPNFSDLRDPEYYSSEFNAGGREW 155
W IP++++L +P+Y S F G EW
Sbjct: 44 WNIPDWNELTNPKYNSPRFRIGDFEW 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.141 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,546,906
Number of Sequences: 539616
Number of extensions: 2785800
Number of successful extensions: 4699
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4690
Number of HSP's gapped (non-prelim): 10
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)