Query 041773
Match_columns 155
No_of_seqs 147 out of 1022
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 17:59:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2foj_A Ubiquitin carboxyl-term 99.9 1.1E-25 3.7E-30 160.4 9.2 106 1-111 48-153 (155)
2 3ivv_A Speckle-type POZ protei 99.9 6.9E-25 2.4E-29 154.7 7.6 99 1-108 47-145 (145)
3 3hqi_A Speckle-type POZ protei 99.9 2.9E-23 1E-27 162.5 6.2 139 1-154 43-185 (312)
4 4gjh_A TNF receptor-associated 99.9 2.7E-23 9.3E-28 151.4 4.2 106 1-108 63-175 (178)
5 1lb6_A TNF receptor-associated 99.9 7E-22 2.4E-26 141.4 6.8 106 1-108 44-158 (160)
6 1d00_A Tumor necrosis factor r 99.8 4.2E-22 1.4E-26 143.4 4.6 104 1-107 58-167 (168)
7 1ca9_A TRAF2, protein (TNF rec 99.8 8.2E-22 2.8E-26 145.0 4.6 104 1-107 82-191 (192)
8 4ghu_A TNF receptor-associated 99.8 8.6E-22 2.9E-26 145.7 3.3 106 1-110 79-191 (198)
9 2gkw_A TNF receptor-associated 99.8 2.2E-21 7.5E-26 142.9 3.3 105 1-108 79-189 (192)
10 2f1z_A Ubiquitin carboxyl-term 99.8 1.9E-20 6.4E-25 155.9 7.0 105 1-110 60-164 (522)
11 1flk_A TNF receptor associated 99.8 8.6E-21 3E-25 143.1 4.2 106 1-109 115-226 (228)
12 4gwm_A Meprin A subunit beta; 98.6 2.4E-08 8.2E-13 84.1 4.9 102 2-111 441-571 (592)
13 2f1z_A Ubiquitin carboxyl-term 96.0 0.003 1E-07 52.2 2.5 31 124-155 29-59 (522)
14 4ghu_A TNF receptor-associated 95.7 0.0017 6E-08 47.3 -0.1 32 124-155 38-78 (198)
15 4gjh_A TNF receptor-associated 95.4 0.0017 5.9E-08 46.3 -0.8 32 124-155 22-62 (178)
16 1ca9_A TRAF2, protein (TNF rec 95.0 0.0022 7.6E-08 46.2 -1.4 31 125-155 42-81 (192)
17 2gkw_A TNF receptor-associated 94.8 0.0034 1.2E-07 45.4 -0.9 32 124-155 38-78 (192)
18 1flk_A TNF receptor associated 94.2 0.0051 1.7E-07 45.7 -1.1 32 124-155 74-114 (228)
19 1yel_A AT1G16640; CESG, protei 21.4 44 0.0015 20.8 1.7 14 72-85 66-79 (104)
No 1
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.93 E-value=1.1e-25 Score=160.39 Aligned_cols=106 Identities=12% Similarity=0.264 Sum_probs=84.0
Q ss_pred CeEEecCCCCCCCCCCeEEEEEEEccCCCCCCCCceEEEEEEEEEEeCCCCceeEEecCCCceEEecCCccccccccccc
Q 041773 1 RLILYPNGNKKGQGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRIKNEYLAIRYDDGAVIRLHSMKRECGIDKLIP 80 (155)
Q Consensus 1 rl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~~~~w~~~a~f~l~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~ 80 (155)
||++||+|+..++..+||||||+|... ..+.+ |++.|+|+|+|+||+++..+..+. ..+.|.....+|||.+||+
T Consensus 48 ~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~-w~v~a~~~l~l~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~ 122 (155)
T 2foj_A 48 KIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTS-WSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMA 122 (155)
T ss_dssp EEEEEEEC------CBEEEEEEEESTT-CCCSS-CEEEEEEEEEECCSSCGGGCEEEE---EEEEEETTBCEEEEEEEEE
T ss_pred EEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCC-CEEEEEEEEEEEcCCCCcceEEec---cEEEeCCCCCCEeECCeEE
Confidence 689999998641134799999999654 44445 999999999999999875322222 3688877667999999999
Q ss_pred ccccccCCCCeeeCCEEEEEEEEEEeCCCCC
Q 041773 81 LQAFKEPSNGYLVDDSCVFGAEIFVIKPTGK 111 (155)
Q Consensus 81 ~~~L~~~~~gyl~dD~l~i~~~V~v~~~~~~ 111 (155)
|++|++|++|||+||+|+|+|+|+|.+++|.
T Consensus 123 ~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~ 153 (155)
T 2foj_A 123 WSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 153 (155)
T ss_dssp HHHHTCTTTSSCBTTBEEEEEEEEECCCBSS
T ss_pred HHHhcCcCCCceECCEEEEEEEEEEeCcccc
Confidence 9999988899999999999999999888774
No 2
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.91 E-value=6.9e-25 Score=154.65 Aligned_cols=99 Identities=25% Similarity=0.337 Sum_probs=82.2
Q ss_pred CeEEecCCCCCCCCCCeEEEEEEEccCCCCCCCCceEEEEEEEEEEeCCCCceeEEecCCCceEEecCCccccccccccc
Q 041773 1 RLILYPNGNKKGQGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRIKNEYLAIRYDDGAVIRLHSMKRECGIDKLIP 80 (155)
Q Consensus 1 rl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~~~~w~~~a~f~l~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~ 80 (155)
||++||||+..+ ..+||||||+|.+. +. |+++|+|+|+|+||+++.+..... ...++|.. ..+|||.+||+
T Consensus 47 ~i~~yP~G~~~~-~~~~lSlyL~l~~~----~~-w~v~a~f~l~llnq~~~~~~~~~~--~~~~~F~~-~~~wG~~~Fi~ 117 (145)
T 3ivv_A 47 CLRVNPKGLDEE-SKDYLSLYLLLVSC----PK-SEVRAKFKFSILNAKGEETKAMES--QRAYRFVQ-GKDWGFKKFIR 117 (145)
T ss_dssp EEEEETTCSSGG-GTTEEEEEEEEEEC----SS-SEEEEEEEEEEECTTSCEEEEEEC--SSCEEEET-TCEEEEEEEEE
T ss_pred EEEEEcCCCCCC-CCCeEEEEEEEcCC----CC-CcEEEEEEEEEEecCCCceeeecc--cceEEecC-CCCcCHHHeEE
Confidence 589999998753 34799999999875 23 999999999999999877654332 24678874 56999999999
Q ss_pred ccccccCCCCeeeCCEEEEEEEEEEeCC
Q 041773 81 LQAFKEPSNGYLVDDSCVFGAEIFVIKP 108 (155)
Q Consensus 81 ~~~L~~~~~gyl~dD~l~i~~~V~v~~~ 108 (155)
+++|+++++|||+||+|+|+|+|+|+++
T Consensus 118 ~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 118 RDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp HHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred hhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 9999876799999999999999999863
No 3
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.88 E-value=2.9e-23 Score=162.51 Aligned_cols=139 Identities=23% Similarity=0.320 Sum_probs=101.4
Q ss_pred CeEEecCCCCCCCCCCeEEEEEEEccCCCCCCCCceEEEEEEEEEEeCCCCceeEEecCCCceEEecCCccccccccccc
Q 041773 1 RLILYPNGNKKGQGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRIKNEYLAIRYDDGAVIRLHSMKRECGIDKLIP 80 (155)
Q Consensus 1 rl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~~~~w~~~a~f~l~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~ 80 (155)
||.+||||++.+ ..+|||+||.|.+.+ . |++.|+|+|+|+||+++....... ...+.|... .+|||.+||+
T Consensus 43 ~i~~yP~G~~~~-~~~~lslyL~~~~~~----~-~~v~a~~~~~l~~~~~~~~~~~~~--~~~~~F~~~-~~wG~~~Fi~ 113 (312)
T 3hqi_A 43 CLRVNPKGLDEE-SKDYLSLYLLLVSCP----K-SEVRAKFKFSILNAKGEETKAMES--QRAYRFVQG-KDWGFKKFIR 113 (312)
T ss_dssp EEEEETTCCC---CTTEEEEEEEEEECC----C--CEEEEEEEEEECTTSCEEEEEEC--SSCEEECTT-CEEEEEEEEE
T ss_pred EEEEECCCCCcc-CCCcEEEEEEEcCCC----C-CcEEEEEEEEEEeCCCCccccccc--CCceeCCCC-CCcCHHHhcc
Confidence 589999998753 357999999998753 3 999999999999999876554432 246788754 4899999999
Q ss_pred ccccccCCCCeeeCCEEEEEEEEEEeCCCCCce---eeEEeecccCCCCeeEEEeCCccCC-CCCcccCCceeeCCcc
Q 041773 81 LQAFKEPSNGYLVDDSCVFGAEIFVIKPTGKGE---ALSIVKVPAQAGNILRWKIPNFSDL-RDPEYYSSEFNAGGRE 154 (155)
Q Consensus 81 ~~~L~~~~~gyl~dD~l~i~~~V~v~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~fs~~-~~~~~~s~~F~~~g~~ 154 (155)
|++|+++++|||+||+|+|+|+|+|++...... ......+|+++ -..+|.++ ....+.+.+|.++|++
T Consensus 114 ~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~~~p~~~------l~~~l~~l~~~~~~~Dv~l~v~~~~ 185 (312)
T 3hqi_A 114 RGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECR------LADELGGLWENSRFTDCCLCVAGQE 185 (312)
T ss_dssp HHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSCCCCCCC------HHHHHHHHHHTTCSCCEEEEETTEE
T ss_pred HHHhhccccCeecCCEEEEEEEEEEEeccccccccccccccCCCCch------HHHHHHHHHhCCCCCceEEEECCEE
Confidence 999987778999999999999999996543211 11233456643 23334443 2345789999998864
No 4
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.87 E-value=2.7e-23 Score=151.36 Aligned_cols=106 Identities=17% Similarity=0.304 Sum_probs=81.7
Q ss_pred CeEEecCCCCCCCCCCeEEEEEEEccCCCC-CCCCceEEEEEEEEEEeCCCCceeEEec--CCCceEEecC----Ccccc
Q 041773 1 RLILYPNGNKKGQGTGHISLYLALDESTYF-PNNPWEVFVNFTFFVQDRIKNEYLAIRY--DDGAVIRLHS----MKREC 73 (155)
Q Consensus 1 rl~~yP~G~~~~~~~~~lSlyL~l~~~~~~-~~~~w~~~a~f~l~l~n~~~~~~~~~~~--~~~~~~~F~~----~~~~w 73 (155)
||++||||++.+. .+||||||+|++.+.+ ... |++.|+|+|+|+||.++....... +....+.|+. ...+|
T Consensus 63 ~i~~yP~G~~~~~-~~~lSlyL~l~~~~~d~~l~-W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~w 140 (178)
T 4gjh_A 63 CARAYLNGDGSGK-GTHLSLYFVVMRGEFDSLLQ-WPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIAS 140 (178)
T ss_dssp EEEEETTCCGGGT-TTEEEEEEEEBCCTTGGGSC-SSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCE
T ss_pred EEEEEECCCCCCC-CCEEEEEEEEecCCCCcccC-CceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCc
Confidence 5899999987543 3799999999876543 233 999999999999998764322210 0112456753 24689
Q ss_pred cccccccccccccCCCCeeeCCEEEEEEEEEEeCC
Q 041773 74 GIDKLIPLQAFKEPSNGYLVDDSCVFGAEIFVIKP 108 (155)
Q Consensus 74 G~~~Fi~~~~L~~~~~gyl~dD~l~i~~~V~v~~~ 108 (155)
||.+||++++|++|++|||+||+|+|+|+|.|.+.
T Consensus 141 G~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 141 GCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp EEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred ChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 99999999999987799999999999999988765
No 5
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.85 E-value=7e-22 Score=141.37 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=75.1
Q ss_pred CeEEecCCCCCCCCCCeEEEEEEEccCCCCCCCCceEEEEEEEEEEeCCCCce---eEEec-CCCceEEecC-----Ccc
Q 041773 1 RLILYPNGNKKGQGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRIKNEY---LAIRY-DDGAVIRLHS-----MKR 71 (155)
Q Consensus 1 rl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~~~~w~~~a~f~l~l~n~~~~~~---~~~~~-~~~~~~~F~~-----~~~ 71 (155)
+|++||||++.+...+||||||++++.+.+...+|++.|+|+|+|+||.+... ..... +......|.. ...
T Consensus 44 ~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~ 123 (160)
T 1lb6_A 44 CMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPK 123 (160)
T ss_dssp EEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSE
T ss_pred EEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceeeeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCC
Confidence 58999999865332479999999987765432139999999999999987521 11100 0001123432 123
Q ss_pred cccccccccccccccCCCCeeeCCEEEEEEEEEEeCC
Q 041773 72 ECGIDKLIPLQAFKEPSNGYLVDDSCVFGAEIFVIKP 108 (155)
Q Consensus 72 ~wG~~~Fi~~~~L~~~~~gyl~dD~l~i~~~V~v~~~ 108 (155)
+|||.+||++++|+ ++|||+||+|+|+|+|+|+.+
T Consensus 124 ~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 124 GFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp EEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred CcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence 79999999999999 689999999999999999864
No 6
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.85 E-value=4.2e-22 Score=143.45 Aligned_cols=104 Identities=20% Similarity=0.329 Sum_probs=78.9
Q ss_pred CeEEecCCCCCCCCCCeEEEEEEEccCCCCC-CCCceEEEEEEEEEEeCCCCceeEEec-CCCceEEecC----Cccccc
Q 041773 1 RLILYPNGNKKGQGTGHISLYLALDESTYFP-NNPWEVFVNFTFFVQDRIKNEYLAIRY-DDGAVIRLHS----MKRECG 74 (155)
Q Consensus 1 rl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~-~~~w~~~a~f~l~l~n~~~~~~~~~~~-~~~~~~~F~~----~~~~wG 74 (155)
||++||||++.+. .+||||||+|++.+.++ .+ |++.|+|+|+|+||++..+..... +....+.|.. ...+||
T Consensus 58 ~i~~yP~G~~~~~-~~~lSlyL~l~~~~~~~~~~-w~~~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G 135 (168)
T 1d00_A 58 CLRIYLNGDGTGR-GTHLSLFFVVMKGPNDALLR-WPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASG 135 (168)
T ss_dssp EEEEETTCCGGGT-TTEEEEEEEEECCTTGGGSC-SSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEE
T ss_pred EEEEEeCCCCCCC-CcEEEEEEEEecCCCCccCC-CceEEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcC
Confidence 5899999987543 36999999998876553 44 999999999999999875433211 0001234542 346899
Q ss_pred ccccccccccccCCCCeeeCCEEEEEEEEEEeC
Q 041773 75 IDKLIPLQAFKEPSNGYLVDDSCVFGAEIFVIK 107 (155)
Q Consensus 75 ~~~Fi~~~~L~~~~~gyl~dD~l~i~~~V~v~~ 107 (155)
|.+||++++|+++ +|||+||+|+|+|+|+|.+
T Consensus 136 ~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 136 CPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp EEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred cceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence 9999999999953 4999999999999998854
No 7
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.84 E-value=8.2e-22 Score=145.04 Aligned_cols=104 Identities=20% Similarity=0.335 Sum_probs=79.5
Q ss_pred CeEEecCCCCCCCCCCeEEEEEEEccCCCCC-CCCceEEEEEEEEEEeCCCCceeEEecC-CCceEEec----CCccccc
Q 041773 1 RLILYPNGNKKGQGTGHISLYLALDESTYFP-NNPWEVFVNFTFFVQDRIKNEYLAIRYD-DGAVIRLH----SMKRECG 74 (155)
Q Consensus 1 rl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~-~~~w~~~a~f~l~l~n~~~~~~~~~~~~-~~~~~~F~----~~~~~wG 74 (155)
||++||||++.+. .+||||||+|++.+.++ .+ |++.|+|+|+|+||+++++...... ......|. ....+||
T Consensus 82 ~i~~yP~G~~~~~-~~~lSlyL~l~~~~~~~~~~-W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG 159 (192)
T 1ca9_A 82 CLRIYLNGDGTGR-GTHLSLFFVVMKGPNDALLR-WPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASG 159 (192)
T ss_dssp EEEEETTCCGGGT-TTEEEEEEEEECCTTGGGSC-SSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEE
T ss_pred EEEEEeCCCCCCC-CCEEEEEEEEccCCCCCcCC-CceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcC
Confidence 5899999987543 46999999999876554 44 9999999999999998754322110 00122353 1245899
Q ss_pred ccccccccccccCCCCeeeCCEEEEEEEEEEeC
Q 041773 75 IDKLIPLQAFKEPSNGYLVDDSCVFGAEIFVIK 107 (155)
Q Consensus 75 ~~~Fi~~~~L~~~~~gyl~dD~l~i~~~V~v~~ 107 (155)
|.+||++++|++ ++|||+||+|+|+|+|+|++
T Consensus 160 ~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 160 CPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp EEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred hhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 999999999986 47999999999999999865
No 8
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.83 E-value=8.6e-22 Score=145.72 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=79.4
Q ss_pred CeEEecCCCCCCCCCCeEEEEEEEccCCCCC-CCCceEEEEEEEEEEeCCCCceeEEec--CCC----ceEEecCCcccc
Q 041773 1 RLILYPNGNKKGQGTGHISLYLALDESTYFP-NNPWEVFVNFTFFVQDRIKNEYLAIRY--DDG----AVIRLHSMKREC 73 (155)
Q Consensus 1 rl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~-~~~w~~~a~f~l~l~n~~~~~~~~~~~--~~~----~~~~F~~~~~~w 73 (155)
+|++||||++.+. .+||||||.+++++.+. .. |++.|+|+|+|+||.+........ +.. ..+.|...+.+|
T Consensus 79 ~i~~yPnG~~~~~-~~~lSlyL~l~~g~~D~~l~-wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~w 156 (198)
T 4ghu_A 79 CARVYLNGDGMGK-GTHLSLFFVIMRGEYDALLP-WPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIAS 156 (198)
T ss_dssp EEEEETTCCGGGT-TTEEEEEEEEECCTTGGGSC-SSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCE
T ss_pred EEEEEeCCCCCCC-CCeEEEEEEecCCccCCCCC-ceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCc
Confidence 5899999987543 46999999999776543 34 999999999999998754322211 000 112233345689
Q ss_pred cccccccccccccCCCCeeeCCEEEEEEEEEEeCCCC
Q 041773 74 GIDKLIPLQAFKEPSNGYLVDDSCVFGAEIFVIKPTG 110 (155)
Q Consensus 74 G~~~Fi~~~~L~~~~~gyl~dD~l~i~~~V~v~~~~~ 110 (155)
||.+||++++|+ ++|||+||+|+|+|+|+|+..+.
T Consensus 157 G~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~~ 191 (198)
T 4ghu_A 157 GCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLPD 191 (198)
T ss_dssp EEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC-
T ss_pred CchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCCC
Confidence 999999999999 58999999999999999987653
No 9
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.82 E-value=2.2e-21 Score=142.88 Aligned_cols=105 Identities=16% Similarity=0.255 Sum_probs=78.7
Q ss_pred CeEEecCCCCCCCCCCeEEEEEEEccCCCCCCCCceEEEEEEEEEEeCCCCceeEE-ec-CCCceEEecCC----ccccc
Q 041773 1 RLILYPNGNKKGQGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRIKNEYLAI-RY-DDGAVIRLHSM----KRECG 74 (155)
Q Consensus 1 rl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~~~~w~~~a~f~l~l~n~~~~~~~~~-~~-~~~~~~~F~~~----~~~wG 74 (155)
+|++||||++.+. .+||||||++++.+.++..+|++.|+|+|+|+||.+...... .. +....+.|... +.+||
T Consensus 79 ~i~~yPnG~~~~~-~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG 157 (192)
T 2gkw_A 79 CARVYLNGDGMGK-GTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 157 (192)
T ss_dssp EEEEETTCCGGGT-TTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEE
T ss_pred EEEEEeCCCCCCC-CCEEEEEEEEecCCCCccCCCcEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCC
Confidence 5899999987543 469999999997765432139999999999999998643221 11 01122456432 36899
Q ss_pred ccccccccccccCCCCeeeCCEEEEEEEEEEeCC
Q 041773 75 IDKLIPLQAFKEPSNGYLVDDSCVFGAEIFVIKP 108 (155)
Q Consensus 75 ~~~Fi~~~~L~~~~~gyl~dD~l~i~~~V~v~~~ 108 (155)
|.+||++++|++ +|||+||+|+|+|+|.|..-
T Consensus 158 ~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~~ 189 (192)
T 2gkw_A 158 CPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL 189 (192)
T ss_dssp EEEEEEHHHHHH--TTSCBTTEEEEEEEECCTTS
T ss_pred hHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCCC
Confidence 999999999994 69999999999999987553
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.81 E-value=1.9e-20 Score=155.94 Aligned_cols=105 Identities=12% Similarity=0.271 Sum_probs=81.6
Q ss_pred CeEEecCCCCCCCCCCeEEEEEEEccCCCCCCCCceEEEEEEEEEEeCCCCceeEEecCCCceEEecCCccccccccccc
Q 041773 1 RLILYPNGNKKGQGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRIKNEYLAIRYDDGAVIRLHSMKRECGIDKLIP 80 (155)
Q Consensus 1 rl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~~~~w~~~a~f~l~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~ 80 (155)
||++||+|+..+...+||||||+|.+. ..+.+ |.++|+|+|.|+|+.++..+..+. ..+.|.....+|||.+||+
T Consensus 60 ~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~-w~v~a~f~l~l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~ 134 (522)
T 2f1z_A 60 KIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTS-WSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMA 134 (522)
T ss_dssp EEEECBC--------CBBCEEEEESTT-CCCSS-CBEEEEEEEEECCTTCGGGCEEEE---CCEEECGGGCEEEESSSSB
T ss_pred EEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCC-ceEEEEEEEEEEcCCCCccceecc---ceeEecCCCCCcchhheeE
Confidence 689999997543245799999999876 44555 999999999999998765433333 3688876667899999999
Q ss_pred ccccccCCCCeeeCCEEEEEEEEEEeCCCC
Q 041773 81 LQAFKEPSNGYLVDDSCVFGAEIFVIKPTG 110 (155)
Q Consensus 81 ~~~L~~~~~gyl~dD~l~i~~~V~v~~~~~ 110 (155)
+++|.++++|||+||+++|+|+|+|..+++
T Consensus 135 ~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g 164 (522)
T 2f1z_A 135 WSEVTDPEKGFIDDDKVTFEVFVQADAPHG 164 (522)
T ss_dssp HHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred hhHhcCcccCcccCCcEEEEEEeecccccc
Confidence 999977789999999999999999976654
No 11
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.81 E-value=8.6e-21 Score=143.12 Aligned_cols=106 Identities=17% Similarity=0.274 Sum_probs=80.0
Q ss_pred CeEEecCCCCCCCCCCeEEEEEEEccCCCCCCCCceEEEEEEEEEEeCCCCceeEE-ec-CCCceEEecC----Cccccc
Q 041773 1 RLILYPNGNKKGQGTGHISLYLALDESTYFPNNPWEVFVNFTFFVQDRIKNEYLAI-RY-DDGAVIRLHS----MKRECG 74 (155)
Q Consensus 1 rl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~~~~w~~~a~f~l~l~n~~~~~~~~~-~~-~~~~~~~F~~----~~~~wG 74 (155)
+|++||||++.+. .+||||||.+++++.++..+|++.|+|+|+|+||.+.+.+.. .. +....+.|.. ...+||
T Consensus 115 ~i~~yPnG~~~~~-~~~lSlyL~l~~~~~d~~l~Wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG 193 (228)
T 1flk_A 115 CARVYLNGDGMGK-GTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 193 (228)
T ss_dssp CEEEETTCCGGGT-TTEEEEEECCBCCTTTTSSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCS
T ss_pred EEEEEcCCCCCCC-CCEEEEEEEEecCCccccCCCcEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcC
Confidence 6899999987543 469999999998765542239999999999999998753221 11 0112234642 245899
Q ss_pred ccccccccccccCCCCeeeCCEEEEEEEEEEeCCC
Q 041773 75 IDKLIPLQAFKEPSNGYLVDDSCVFGAEIFVIKPT 109 (155)
Q Consensus 75 ~~~Fi~~~~L~~~~~gyl~dD~l~i~~~V~v~~~~ 109 (155)
|.+||++++|+ ++|||+||+|+|+|+|.|.+..
T Consensus 194 ~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~ 226 (228)
T 1flk_A 194 CPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP 226 (228)
T ss_dssp EEEEEEHHHHS--SSTTCCSSEEEEEEECCCTTSC
T ss_pred HHHeeEHHHHc--cCCCccCCEEEEEEEEEccccc
Confidence 99999999999 4899999999999999987643
No 12
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=98.63 E-value=2.4e-08 Score=84.08 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=69.5
Q ss_pred eEEecCCCCCCCCCCeEEEEEEEccCCCCCCCCceE-EEEEEEEEEeCCCCc----eeEEecC-C-----------C---
Q 041773 2 LILYPNGNKKGQGTGHISLYLALDESTYFPNNPWEV-FVNFTFFVQDRIKNE----YLAIRYD-D-----------G--- 61 (155)
Q Consensus 2 l~~yP~G~~~~~~~~~lSlyL~l~~~~~~~~~~w~~-~a~f~l~l~n~~~~~----~~~~~~~-~-----------~--- 61 (155)
|.+||+| + .|+|||++|+.++.+..-+|++ .-++++.|+||+..- +..+.-+ . +
T Consensus 441 v~l~~~~-----~-~~~~~~~~l~sG~~D~~L~WP~~~~q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P 514 (592)
T 4gwm_A 441 IYLNLAH-----V-TNAGIYFHLISGANDDQLQWPCPWQQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRP 514 (592)
T ss_dssp EEEECCS-----S-SEEEEEEEEECCTTGGGSCSSCCSEEEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCH
T ss_pred EEEecCC-----C-ceEEEEEEEecCCCCCCccCCCCCCEEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCc
Confidence 4556654 2 4999999999987765335999 478999999996321 1111100 0 0
Q ss_pred ----ceEEecCC-----cccccccccccccccccCCCCeeeCCEEEEEEEEEEeCCCCC
Q 041773 62 ----AVIRLHSM-----KRECGIDKLIPLQAFKEPSNGYLVDDSCVFGAEIFVIKPTGK 111 (155)
Q Consensus 62 ----~~~~F~~~-----~~~wG~~~Fi~~~~L~~~~~gyl~dD~l~i~~~V~v~~~~~~ 111 (155)
....|.+. ..+|||+.||+++.|. +..||.||.|+|.+.|+=+.....
T Consensus 515 ~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~eD~~~l~~ 571 (592)
T 4gwm_A 515 SKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--SRDFIKGDDVYILLTVEDISHLNS 571 (592)
T ss_dssp HHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEEECGGGSS
T ss_pred ccccccccccCCcceeecCCcCccccccHHHHh--hcCcccCCeEEEEEEEEeCccccc
Confidence 01122221 2478999999999998 577999999999999977765433
No 13
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=95.99 E-value=0.003 Score=52.22 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=28.4
Q ss_pred CCCeeEEEeCCccCCCCCcccCCceeeCCccC
Q 041773 124 AGNILRWKIPNFSDLRDPEYYSSEFNAGGREW 155 (155)
Q Consensus 124 ~~~~~~~~~~~fs~~~~~~~~s~~F~~~g~~w 155 (155)
..+.|+|+|.+||.+++ .+.|++|.|||++|
T Consensus 29 ~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W 59 (522)
T 2f1z_A 29 SEATFQFTVERFSRLSE-SVLSPPCFVRNLPW 59 (522)
T ss_dssp SEEEEEEEESSCTTCCS-CEECCCEEETTEEE
T ss_pred CCcEEEEEECChhhcCC-ceeCCCEEECCEee
Confidence 46799999999999987 78999999999999
No 14
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=95.69 E-value=0.0017 Score=47.25 Aligned_cols=32 Identities=28% Similarity=0.602 Sum_probs=28.4
Q ss_pred CCCeeEEEeCCccCCCC-------CcccCCceeeC--CccC
Q 041773 124 AGNILRWKIPNFSDLRD-------PEYYSSEFNAG--GREW 155 (155)
Q Consensus 124 ~~~~~~~~~~~fs~~~~-------~~~~s~~F~~~--g~~w 155 (155)
..+.|+|+|.+||.+.+ +.+.|++|.+| |.+|
T Consensus 38 ~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W 78 (198)
T 4ghu_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM 78 (198)
T ss_dssp SSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEE
T ss_pred cccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEE
Confidence 37899999999999854 57899999999 9998
No 15
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=95.45 E-value=0.0017 Score=46.29 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=27.9
Q ss_pred CCCeeEEEeCCccCCCC-------CcccCCceeeC--CccC
Q 041773 124 AGNILRWKIPNFSDLRD-------PEYYSSEFNAG--GREW 155 (155)
Q Consensus 124 ~~~~~~~~~~~fs~~~~-------~~~~s~~F~~~--g~~w 155 (155)
..+.|+|+|.+||.+.+ ..+.|++|.+| |.+|
T Consensus 22 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W 62 (178)
T 4gjh_A 22 YSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRL 62 (178)
T ss_dssp SSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEE
T ss_pred cceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEE
Confidence 37899999999999854 26899999999 9998
No 16
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=95.02 E-value=0.0022 Score=46.23 Aligned_cols=31 Identities=26% Similarity=0.562 Sum_probs=27.4
Q ss_pred CCeeEEEeCCccCCCCC-------cccCCceee--CCccC
Q 041773 125 GNILRWKIPNFSDLRDP-------EYYSSEFNA--GGREW 155 (155)
Q Consensus 125 ~~~~~~~~~~fs~~~~~-------~~~s~~F~~--~g~~w 155 (155)
.+.|+|+|.+||.+.+. .+.|++|.+ ||.+|
T Consensus 42 ~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W 81 (192)
T 1ca9_A 42 DGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKM 81 (192)
T ss_dssp SSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEE
T ss_pred CceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEE
Confidence 78999999999998542 489999999 99998
No 17
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=94.82 E-value=0.0034 Score=45.36 Aligned_cols=32 Identities=28% Similarity=0.619 Sum_probs=27.5
Q ss_pred CCCeeEEEeCCccCCCC-----C--cccCCceeeC--CccC
Q 041773 124 AGNILRWKIPNFSDLRD-----P--EYYSSEFNAG--GREW 155 (155)
Q Consensus 124 ~~~~~~~~~~~fs~~~~-----~--~~~s~~F~~~--g~~w 155 (155)
..+.|+|+|.+||.+.+ + .+.|++|.+| |.+|
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw 78 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM 78 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEE
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEE
Confidence 47899999999999852 2 5889999999 9998
No 18
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=94.24 E-value=0.0051 Score=45.68 Aligned_cols=32 Identities=28% Similarity=0.602 Sum_probs=27.7
Q ss_pred CCCeeEEEeCCccCCCC-------CcccCCceeeC--CccC
Q 041773 124 AGNILRWKIPNFSDLRD-------PEYYSSEFNAG--GREW 155 (155)
Q Consensus 124 ~~~~~~~~~~~fs~~~~-------~~~~s~~F~~~--g~~w 155 (155)
..+.|+|+|.+||.+.+ +.+.|++|.+| |.+|
T Consensus 74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w 114 (228)
T 1flk_A 74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM 114 (228)
T ss_dssp SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEE
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEE
Confidence 37899999999999853 36889999999 9998
No 19
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=21.42 E-value=44 Score=20.80 Aligned_cols=14 Identities=7% Similarity=0.294 Sum_probs=11.5
Q ss_pred cccccccccccccc
Q 041773 72 ECGIDKLIPLQAFK 85 (155)
Q Consensus 72 ~wG~~~Fi~~~~L~ 85 (155)
.-||.+|+.-..|+
T Consensus 66 ~~GW~~Fv~~~~L~ 79 (104)
T 1yel_A 66 TVGWENFVKDNNLE 79 (104)
T ss_dssp CTTHHHHHHHHTCC
T ss_pred ccChHHHHHHcCCC
Confidence 35888999988887
Done!