Query 041774
Match_columns 382
No_of_seqs 234 out of 1419
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 10:30:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03215 ascorbic acid mannose 100.0 3.2E-42 6.9E-47 323.1 27.8 275 17-325 2-337 (373)
2 TIGR01640 F_box_assoc_1 F-box 99.7 1.7E-15 3.6E-20 137.2 20.1 173 101-293 1-188 (230)
3 PF03478 DUF295: Protein of un 99.3 5.1E-12 1.1E-16 86.7 3.8 40 286-325 1-40 (54)
4 PF12937 F-box-like: F-box-lik 98.5 3.8E-08 8.3E-13 65.5 1.7 36 19-58 1-36 (47)
5 PHA02713 hypothetical protein; 98.5 2.6E-05 5.6E-10 79.7 21.8 211 77-323 275-518 (557)
6 PHA02790 Kelch-like protein; P 98.3 0.00011 2.4E-09 73.9 20.6 185 76-289 289-477 (480)
7 PF08268 FBA_3: F-box associat 98.3 9.1E-06 2E-10 66.5 10.2 80 209-291 2-89 (129)
8 PF00646 F-box: F-box domain; 98.3 1.5E-07 3.3E-12 62.8 -0.4 38 18-59 2-39 (48)
9 smart00256 FBOX A Receptor for 98.1 1E-06 2.2E-11 56.5 1.3 33 22-58 1-33 (41)
10 PHA03098 kelch-like protein; P 98.0 0.00087 1.9E-08 68.4 21.1 197 76-293 313-522 (534)
11 PHA02713 hypothetical protein; 98.0 0.00088 1.9E-08 68.5 19.7 188 77-292 323-543 (557)
12 KOG4441 Proteins containing BT 97.9 0.0011 2.4E-08 67.8 19.8 196 75-293 302-510 (571)
13 PLN02153 epithiospecifier prot 97.9 0.0068 1.5E-07 58.1 23.5 199 76-292 52-294 (341)
14 PF07734 FBA_1: F-box associat 97.7 0.00097 2.1E-08 56.9 13.5 81 209-292 2-93 (164)
15 PHA03098 kelch-like protein; P 97.7 0.0039 8.4E-08 63.6 18.9 150 130-293 311-475 (534)
16 KOG4441 Proteins containing BT 97.5 0.0084 1.8E-07 61.4 19.4 188 76-292 351-556 (571)
17 TIGR03548 mutarot_permut cycli 97.5 0.019 4.1E-07 54.6 19.6 107 182-293 89-205 (323)
18 TIGR03548 mutarot_permut cycli 97.4 0.06 1.3E-06 51.1 22.7 157 130-293 88-290 (323)
19 PLN02193 nitrile-specifier pro 97.4 0.053 1.2E-06 54.4 23.0 202 76-294 195-422 (470)
20 PLN02153 epithiospecifier prot 97.4 0.023 4.9E-07 54.5 19.6 154 130-293 50-236 (341)
21 PHA02790 Kelch-like protein; P 97.4 0.011 2.4E-07 59.4 17.7 158 130-323 287-452 (480)
22 TIGR03547 muta_rot_YjhT mutatr 97.3 0.039 8.4E-07 52.9 20.0 152 130-294 29-239 (346)
23 PLN02193 nitrile-specifier pro 97.3 0.041 8.9E-07 55.2 20.0 155 130-294 193-363 (470)
24 PRK14131 N-acetylneuraminic ac 97.2 0.081 1.8E-06 51.5 20.8 107 182-294 107-260 (376)
25 KOG2120 SCF ubiquitin ligase, 97.1 0.00029 6.2E-09 64.4 2.1 37 18-58 97-133 (419)
26 TIGR03547 muta_rot_YjhT mutatr 95.6 2.2 4.9E-05 40.7 24.3 126 182-323 169-327 (346)
27 PRK14131 N-acetylneuraminic ac 95.1 2.6 5.6E-05 40.9 18.6 144 130-287 189-373 (376)
28 COG4257 Vgb Streptogramin lyas 92.7 5 0.00011 36.8 13.7 121 100-241 194-316 (353)
29 PF13570 PQQ_3: PQQ-like domai 92.1 0.29 6.2E-06 30.7 3.8 39 189-230 1-39 (40)
30 KOG1230 Protein containing rep 91.0 2.1 4.4E-05 41.4 9.8 141 182-324 155-338 (521)
31 PF07646 Kelch_2: Kelch motif; 89.3 0.8 1.7E-05 30.1 4.2 40 254-293 6-49 (49)
32 KOG1230 Protein containing rep 89.3 16 0.00034 35.6 14.1 108 180-291 97-224 (521)
33 PF01344 Kelch_1: Kelch motif; 88.3 1.9 4.2E-05 27.7 5.5 40 253-292 5-46 (47)
34 KOG0379 Kelch repeat-containin 87.0 9.1 0.0002 38.6 12.0 107 182-293 140-260 (482)
35 PF13964 Kelch_6: Kelch motif 86.1 2.3 5E-05 27.9 5.0 34 206-239 5-45 (50)
36 KOG4693 Uncharacterized conser 85.7 5.7 0.00012 36.2 8.6 103 185-290 161-284 (392)
37 PF13964 Kelch_6: Kelch motif 85.0 1.9 4.2E-05 28.2 4.2 40 254-293 6-47 (50)
38 KOG2502 Tub family proteins [G 83.9 0.59 1.3E-05 43.9 1.6 40 17-59 43-89 (355)
39 KOG2997 F-box protein FBX9 [Ge 83.4 0.6 1.3E-05 43.4 1.4 39 20-58 108-147 (366)
40 PF07893 DUF1668: Protein of u 82.5 45 0.00098 31.9 14.0 119 99-237 70-214 (342)
41 KOG0379 Kelch repeat-containin 80.5 19 0.00042 36.3 11.2 108 182-293 89-209 (482)
42 smart00564 PQQ beta-propeller 80.0 5.8 0.00013 23.1 4.6 25 208-232 2-26 (33)
43 KOG4693 Uncharacterized conser 80.0 5.5 0.00012 36.3 6.2 83 208-293 84-176 (392)
44 PF10282 Lactonase: Lactonase, 77.4 68 0.0015 30.6 19.5 81 205-290 247-332 (345)
45 PF01344 Kelch_1: Kelch motif; 76.0 8.2 0.00018 24.6 4.8 33 206-238 5-44 (47)
46 KOG0281 Beta-TrCP (transducin 73.5 1.7 3.6E-05 40.9 1.2 34 21-58 77-114 (499)
47 COG2706 3-carboxymuconate cycl 70.3 1E+02 0.0022 29.4 17.8 76 210-290 252-331 (346)
48 PRK11138 outer membrane biogen 69.7 1.1E+02 0.0024 29.6 14.5 43 188-232 313-355 (394)
49 PF07646 Kelch_2: Kelch motif; 66.5 16 0.00035 23.7 4.6 32 207-238 6-46 (49)
50 KOG4341 F-box protein containi 65.3 3.6 7.9E-05 40.0 1.6 37 17-58 71-107 (483)
51 PRK11138 outer membrane biogen 64.7 1.4E+02 0.003 28.9 16.9 27 206-232 250-276 (394)
52 PF13418 Kelch_4: Galactose ox 62.9 25 0.00055 22.5 5.0 28 212-239 12-46 (49)
53 TIGR03300 assembly_YfgL outer 58.4 1.7E+02 0.0038 27.9 17.8 41 187-232 259-299 (377)
54 KOG2445 Nuclear pore complex c 57.0 1E+02 0.0022 29.0 9.3 105 191-295 100-222 (361)
55 KOG0274 Cdc4 and related F-box 56.2 3.5 7.5E-05 42.1 -0.2 37 18-58 107-143 (537)
56 PF03178 CPSF_A: CPSF A subuni 55.4 1.8E+02 0.0039 27.2 16.0 107 130-237 2-123 (321)
57 PF06433 Me-amine-dh_H: Methyl 52.6 2.2E+02 0.0047 27.3 13.8 90 205-294 186-289 (342)
58 PF09372 PRANC: PRANC domain; 51.3 9.8 0.00021 29.0 1.7 25 17-45 70-94 (97)
59 TIGR03032 conserved hypothetic 50.6 56 0.0012 30.8 6.7 56 205-269 205-261 (335)
60 PRK04792 tolB translocation pr 49.8 2.7E+02 0.0059 27.6 19.9 145 129-290 241-390 (448)
61 PF13415 Kelch_3: Galactose ox 49.0 28 0.00062 22.4 3.4 34 260-293 2-38 (49)
62 PF12458 DUF3686: ATPase invol 45.5 3.1E+02 0.0068 27.1 11.0 24 126-149 249-272 (448)
63 PF01011 PQQ: PQQ enzyme repea 44.9 44 0.00095 20.3 3.6 20 213-232 1-20 (38)
64 PF13013 F-box-like_2: F-box-l 44.8 12 0.00026 29.4 1.2 29 19-51 22-50 (109)
65 KOG0289 mRNA splicing factor [ 42.6 3.5E+02 0.0076 26.8 11.9 82 204-295 391-475 (506)
66 PF13859 BNR_3: BNR repeat-lik 41.4 1.4E+02 0.003 28.2 8.0 64 224-293 151-217 (310)
67 PF08450 SGL: SMP-30/Gluconola 40.9 2.6E+02 0.0056 24.8 10.1 73 206-292 3-78 (246)
68 PF00958 GMP_synt_C: GMP synth 40.7 15 0.00032 27.9 1.1 23 12-34 47-69 (93)
69 PF13360 PQQ_2: PQQ-like domai 40.6 1.1E+02 0.0024 26.7 7.1 110 105-236 122-236 (238)
70 PF14870 PSII_BNR: Photosynthe 40.1 3.2E+02 0.007 25.7 12.4 114 184-308 169-293 (302)
71 TIGR03300 assembly_YfgL outer 38.6 3.6E+02 0.0077 25.7 17.2 27 206-232 235-261 (377)
72 PLN00033 photosystem II stabil 36.5 4.2E+02 0.0092 26.0 13.3 92 188-289 117-214 (398)
73 PF07569 Hira: TUP1-like enhan 35.9 1.6E+02 0.0034 26.2 7.2 80 208-292 18-105 (219)
74 PF03055 RPE65: Retinal pigmen 35.5 2.7E+02 0.0059 28.0 9.7 78 204-283 122-204 (486)
75 PF02897 Peptidase_S9_N: Proly 34.1 4.4E+02 0.0096 25.5 14.1 93 181-280 252-357 (414)
76 smart00612 Kelch Kelch domain. 33.2 74 0.0016 19.5 3.5 21 273-293 14-34 (47)
77 KOG3926 F-box proteins [Amino 33.0 30 0.00065 31.7 2.0 31 17-50 200-230 (332)
78 PF10282 Lactonase: Lactonase, 32.6 3.2E+02 0.0068 25.9 9.2 85 204-290 193-285 (345)
79 KOG0315 G-protein beta subunit 31.3 4.2E+02 0.009 24.3 16.4 35 203-237 125-161 (311)
80 PTZ00486 apyrase Superfamily; 29.6 1.8E+02 0.004 27.8 6.6 29 204-232 116-145 (352)
81 KOG0292 Vesicle coat complex C 29.3 8E+02 0.017 27.0 12.0 89 182-282 229-323 (1202)
82 COG4946 Uncharacterized protei 28.0 6.4E+02 0.014 25.4 13.2 97 130-238 341-439 (668)
83 PF08309 LVIVD: LVIVD repeat; 27.9 1.6E+02 0.0036 18.6 4.3 26 206-231 5-30 (42)
84 COG4257 Vgb Streptogramin lyas 27.5 4.3E+02 0.0093 24.7 8.3 49 212-265 243-292 (353)
85 PF06079 Apyrase: Apyrase; In 25.5 97 0.0021 28.8 4.0 61 204-267 55-118 (291)
86 PLN02258 9-cis-epoxycarotenoid 25.5 3.9E+02 0.0084 27.8 8.8 80 204-283 239-321 (590)
87 COG2706 3-carboxymuconate cycl 25.1 6.2E+02 0.013 24.3 14.1 128 182-310 168-309 (346)
88 PF06058 DCP1: Dcp1-like decap 24.9 87 0.0019 25.1 3.2 27 273-301 28-54 (122)
89 KOG1332 Vesicle coat complex C 22.9 5.5E+02 0.012 23.5 8.0 137 182-323 81-239 (299)
90 TIGR03075 PQQ_enz_alc_DH PQQ-d 21.5 7.2E+02 0.016 25.4 9.9 31 206-236 63-95 (527)
No 1
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=100.00 E-value=3.2e-42 Score=323.10 Aligned_cols=275 Identities=17% Similarity=0.230 Sum_probs=193.0
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhccccCC---CCCCCCCceeecC---C-ceeeeec--------
Q 041774 17 KSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVPL---KEINLQPWLFSCH---S-ISHLFDT-------- 81 (382)
Q Consensus 17 ~~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~~~---~~~~~~Pwll~~p---~-~~~~~~~-------- 81 (382)
++|++||+|||+.|+.|| ++..|++|||+||++||+++.+. .+.++.||++..| . ...-.++
T Consensus 2 ~~Ws~Lp~dll~~i~~~l---~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL---FSNVELKRFRSICRSWRSSVSGVGKKNPFRTRPLILFNPINPSETLTDDRSYISRPGAF 78 (373)
T ss_pred CChhhCCHHHHHHHHhhC---CcHHHHHHHHhhhhhHHHhcccccccCCcccccccccCcccCCCCccccccccccccce
Confidence 589999999999999999 78899999999999999997643 2344558887543 1 0000000
Q ss_pred -CCCcEEEecCCCcCCCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCccc--C------
Q 041774 82 -THKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMF--S------ 152 (382)
Q Consensus 82 -~~~~~~~~~l~p~~~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~--~------ 152 (382)
+....+++.+ + .++++|||+..++..+ .+.+.|+||+++..+.+|+.... .
T Consensus 79 ls~~~~~r~~~-~-------~~~~~~WLik~~~~~~------------~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei 138 (373)
T PLN03215 79 LSRAAFFRVTL-S-------SSPSKGWLIKSDMDVN------------SGRFHLLNPLSRLPLRHSSESVDLLEFTVSEI 138 (373)
T ss_pred eeeeEEEEeec-C-------CCCCCCcEEEEecccc------------CCccEecCccccCccCCCCccceeeeeEEEEc
Confidence 0001222221 1 1457999999876532 46889999999999998873210 0
Q ss_pred ---cce---------------EEE-cCCCCC-CCeEEEEEEEeeCCCeEEEEEEecCCCceEEeecCCcccccceEEEEC
Q 041774 153 ---SDK---------------ATF-STAPTS-LFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLR 212 (382)
Q Consensus 153 ---~~~---------------v~~-s~~p~s-~~~~v~~i~~~~~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~ 212 (382)
|.. +++ .-.+.. .+++|++|.. .+ .+++|+ +++|+.++. ....+.|+|+|+
T Consensus 139 ~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~--~g---~l~~w~--~~~Wt~l~~--~~~~~~DIi~~k 209 (373)
T PLN03215 139 REAYQVLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGR--DG---KINYWD--GNVLKALKQ--MGYHFSDIIVHK 209 (373)
T ss_pred cceEEEEecccccccccceeEEEEEEeecCCCcceEEEEEee--cC---cEeeec--CCeeeEccC--CCceeeEEEEEC
Confidence 100 110 001111 1355666664 22 567787 699999953 335799999999
Q ss_pred CEEEEEeeCCeEEEEEcCCCCeEEeccCCCCCCc--ceeeceeEEEEeCCcEEEEEEeCC--------------C-ceEE
Q 041774 213 GVLYCSFCNNVLGAFRVSTNSWKIYPHNRIRPTS--VYLYYGLIESEHEGSLLSVYYDSH--------------R-LQWL 275 (382)
Q Consensus 213 G~~Y~l~~~g~l~~~d~~~~~~~~~~~p~~~~~~--~~~~~~~~LVe~~G~LllV~~~~~--------------~-~~~~ 275 (382)
|+||+++..|.++++|.+.+ ...+.. ...... .......||||++|+|+||.+... . ..|+
T Consensus 210 GkfYAvD~~G~l~~i~~~l~-i~~v~~-~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~ 287 (373)
T PLN03215 210 GQTYALDSIGIVYWINSDLE-FSRFGT-SLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFK 287 (373)
T ss_pred CEEEEEcCCCeEEEEecCCc-eeeecc-eecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEE
Confidence 99999999999999985432 222211 111000 111145899999999999999531 1 2799
Q ss_pred EEEEEcCCCCEEEcccCCCcEEEEcCCCeeeeeccCCCCcCCCeEEEccC
Q 041774 276 VFRFDLIKENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVECS 325 (382)
Q Consensus 276 V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~~~~~~g~~~N~IYf~d~ 325 (382)
|||+|.+..+|+||++|||+|||+|.++++++++.+++|+++|||||+|+
T Consensus 288 VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd 337 (373)
T PLN03215 288 VYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTED 337 (373)
T ss_pred EEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999953
No 2
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.70 E-value=1.7e-15 Score=137.16 Aligned_cols=173 Identities=18% Similarity=0.156 Sum_probs=123.7
Q ss_pred EEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCccc----CcceEEEcCCCCCCCeEEEEEEEee
Q 041774 101 KASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMF----SSDKATFSTAPTSLFCTVFVLSVYY 176 (382)
Q Consensus 101 ~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~----~~~~v~~s~~p~s~~~~v~~i~~~~ 176 (382)
+|||+|+|++... ..++|+||.|++...||+.+.. .....+|+.+|.+.+|+|+.+.. .
T Consensus 1 ~~sCnGLlc~~~~----------------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~-~ 63 (230)
T TIGR01640 1 VVPCDGLICFSYG----------------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSD-R 63 (230)
T ss_pred CcccceEEEEecC----------------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEe-e
Confidence 3789999976643 3789999999999999875431 11246788888888999998865 2
Q ss_pred C--CCeEEEEEEecCCCceEEeecCCcc-cccceEEEECCEEEEEeeCC------eEEEEEcCCCCeE-EeccCCCCCCc
Q 041774 177 S--TRRICISTCKPGERTWTRHFFDGFY-GDLHGLTYLRGVLYCSFCNN------VLGAFRVSTNSWK-IYPHNRIRPTS 246 (382)
Q Consensus 177 ~--~~~~~i~~~r~gd~~W~~~~~~~~~-~~~~d~v~~~G~~Y~l~~~g------~l~~~d~~~~~~~-~~~~p~~~~~~ 246 (382)
. .....+.+|..++++|+.+...... ......++.||.+|++...+ .|++||+..++|+ .++.|.....
T Consensus 64 ~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~- 142 (230)
T TIGR01640 64 SGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSD- 142 (230)
T ss_pred cCCCCCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccc-
Confidence 1 1124667899999999998521111 12233889999999997432 6999999999999 4766532111
Q ss_pred ceeeceeEEEEeCCcEEEEEEeCCCceEEEEEEEc-CCCCEEEcccCC
Q 041774 247 VYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDL-IKENWVEVNRLD 293 (382)
Q Consensus 247 ~~~~~~~~LVe~~G~LllV~~~~~~~~~~V~~ld~-~~~~W~~v~~Lg 293 (382)
......|++.+|.|.+|........++||.|++ +..+|.|.-++.
T Consensus 143 --~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~ 188 (230)
T TIGR01640 143 --SVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVP 188 (230)
T ss_pred --cccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEc
Confidence 012457999999999998865323699999985 456799987775
No 3
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=99.25 E-value=5.1e-12 Score=86.75 Aligned_cols=40 Identities=38% Similarity=0.399 Sum_probs=38.2
Q ss_pred EEEcccCCCcEEEEcCCCeeeeeccCCCCcCCCeEEEccC
Q 041774 286 WVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVECS 325 (382)
Q Consensus 286 W~~v~~Lg~~alFlg~~~s~~~~~~~~~g~~~N~IYf~d~ 325 (382)
|++|++|||+|||||.++++++++.+++|+++|||||+++
T Consensus 1 W~~v~~lGd~alFlg~~~~~~~~a~~~~g~~~n~IYf~~~ 40 (54)
T PF03478_consen 1 WVEVKSLGDRALFLGRNCSFSVSASDFPGLKGNCIYFLDD 40 (54)
T ss_pred CcCccccCCEEEEEeCCccEEEECCCCCCccCCEEEEecC
Confidence 9999999999999999999999999999999999999943
No 4
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.52 E-value=3.8e-08 Score=65.45 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774 19 WSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV 58 (382)
Q Consensus 19 Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~ 58 (382)
|++||+|++..|+..| +..|+++++.|||.|+.++.
T Consensus 1 i~~LP~Eil~~If~~L----~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYL----DPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-----HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHC
Confidence 7899999999999999 99999999999999999975
No 5
>PHA02713 hypothetical protein; Provisional
Probab=98.48 E-value=2.6e-05 Score=79.67 Aligned_cols=211 Identities=16% Similarity=0.148 Sum_probs=129.5
Q ss_pred eeeecCCCcEEEecCCCcCCCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcc--
Q 041774 77 HLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSD-- 154 (382)
Q Consensus 77 ~~~~~~~~~~~~~~l~p~~~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~-- 154 (382)
..||+..++|..+...|........+..+|-|++..+...+. .....+...||.+..+.++|+++.....
T Consensus 275 ~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~--------~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~ 346 (557)
T PHA02713 275 LVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNN--------PSLNKVYKINIENKIHVELPPMIKNRCRFS 346 (557)
T ss_pred EEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCC--------CccceEEEEECCCCeEeeCCCCcchhhcee
Confidence 468999888887643233211122344577777765421000 0135688899999999999988654322
Q ss_pred eEEEcCCCCCCCeEEEEEEEeeCC--CeEEEEEEecCCCceEEeecCCcc--cccceEEEECCEEEEEeeC---------
Q 041774 155 KATFSTAPTSLFCTVFVLSVYYST--RRICISTCKPGERTWTRHFFDGFY--GDLHGLTYLRGVLYCSFCN--------- 221 (382)
Q Consensus 155 ~v~~s~~p~s~~~~v~~i~~~~~~--~~~~i~~~r~gd~~W~~~~~~~~~--~~~~d~v~~~G~~Y~l~~~--------- 221 (382)
.+++. + ++.++.. .++ ....+..|.+..+.|+.+. .++ .....++.++|++|++...
T Consensus 347 ~~~~~------g-~IYviGG-~~~~~~~~sve~Ydp~~~~W~~~~--~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 347 LAVID------D-TIYAIGG-QNGTNVERTIECYTMGDDKWKMLP--DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred EEEEC------C-EEEEECC-cCCCCCCceEEEEECCCCeEEECC--CCCcccccccEEEECCEEEEEeCCCcccccccc
Confidence 22231 1 2333332 111 1235678999999999873 332 2334567789999998621
Q ss_pred ---------------CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCc--eEEEEEEEcCC-
Q 041774 222 ---------------NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRL--QWLVFRFDLIK- 283 (382)
Q Consensus 222 ---------------g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~--~~~V~~ld~~~- 283 (382)
..+..||+..++|+.++..+. +. ...-++..+|+|+++....... .-.|.+.|.++
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r-----~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~ 490 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GT-----IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTY 490 (557)
T ss_pred cccccccccccccccceEEEECCCCCeEeecCCCCc-cc-----ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCC
Confidence 247889999999998753221 11 2334788899999997654221 23478889988
Q ss_pred CCEEEcccCCCcEEEEcCCCeeeeeccCCCCcCCCeEEEc
Q 041774 284 ENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVE 323 (382)
Q Consensus 284 ~~W~~v~~Lg~~alFlg~~~s~~~~~~~~~g~~~N~IYf~ 323 (382)
.+|..+.+|.-.-. ...+ ...+|+||.+
T Consensus 491 ~~W~~~~~m~~~r~------~~~~------~~~~~~iyv~ 518 (557)
T PHA02713 491 NGWELITTTESRLS------ALHT------ILHDNTIMML 518 (557)
T ss_pred CCeeEccccCcccc------ccee------EEECCEEEEE
Confidence 79999998864221 1111 1247799999
No 6
>PHA02790 Kelch-like protein; Provisional
Probab=98.28 E-value=0.00011 Score=73.87 Aligned_cols=185 Identities=10% Similarity=-0.011 Sum_probs=113.5
Q ss_pred eeeeecCCCcEEEecCCCcCCCC-eEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcc
Q 041774 76 SHLFDTTHKLKYTIKTDPRVLHS-KIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSD 154 (382)
Q Consensus 76 ~~~~~~~~~~~~~~~l~p~~~~~-~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~ 154 (382)
+..|||..++|..+..-|. ++. ....+.+|.|.+..+.. ....+.-.||.+.++..+|+++.....
T Consensus 289 v~~Ydp~~~~W~~~~~m~~-~r~~~~~v~~~~~iYviGG~~------------~~~sve~ydp~~n~W~~~~~l~~~r~~ 355 (480)
T PHA02790 289 AIAVNYISNNWIPIPPMNS-PRLYASGVPANNKLYVVGGLP------------NPTSVERWFHGDAAWVNMPSLLKPRCN 355 (480)
T ss_pred EEEEECCCCEEEECCCCCc-hhhcceEEEECCEEEEECCcC------------CCCceEEEECCCCeEEECCCCCCCCcc
Confidence 3468999888876643122 221 12234588888775531 123456779999999999988754332
Q ss_pred --eEEEcCCCCCCCeEEEEEEEeeCCCeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEeeCCeEEEEEcCCC
Q 041774 155 --KATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTN 232 (382)
Q Consensus 155 --~v~~s~~p~s~~~~v~~i~~~~~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~g~l~~~d~~~~ 232 (382)
.+++. + .+.++.. ..+....+..|.+.++.|+.+.....+.....++.++|++|++. |....||+..+
T Consensus 356 ~~~~~~~------g-~IYviGG-~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~ 425 (480)
T PHA02790 356 PAVASIN------N-VIYVIGG-HSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESSN 425 (480)
T ss_pred cEEEEEC------C-EEEEecC-cCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCCC
Confidence 22221 1 2333332 11111245678999999998732222233445678999999986 56778999999
Q ss_pred CeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCc-eEEEEEEEcCCCCEEEc
Q 041774 233 SWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRL-QWLVFRFDLIKENWVEV 289 (382)
Q Consensus 233 ~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~-~~~V~~ld~~~~~W~~v 289 (382)
+|+.++..+ .+. ...-++..+|+|+++....... .-.|...|.++.+|.-+
T Consensus 426 ~W~~~~~m~-~~r-----~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 426 TWTLIDDPI-YPR-----DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred cEeEcCCCC-CCc-----cccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 999886322 111 2334677899999998754221 23456678888999654
No 7
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.26 E-value=9.1e-06 Score=66.51 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=62.2
Q ss_pred EEECCEEEEEeeC-----CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC--ceEEEEEEEc
Q 041774 209 TYLRGVLYCSFCN-----NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR--LQWLVFRFDL 281 (382)
Q Consensus 209 v~~~G~~Y~l~~~-----g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~--~~~~V~~ld~ 281 (382)
++.||.+|+++.. ..|++||+..++|+.+..|.... .......|++.+|+|.+|...... ..++||.|+.
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~---~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPY---SSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeec---cccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 6789999999754 57999999999999998761110 112567899999999999887643 3699999976
Q ss_pred -CCCCEEEccc
Q 041774 282 -IKENWVEVNR 291 (382)
Q Consensus 282 -~~~~W~~v~~ 291 (382)
++.+|.|...
T Consensus 79 ~~k~~Wsk~~~ 89 (129)
T PF08268_consen 79 YEKQEWSKKHI 89 (129)
T ss_pred cccceEEEEEE
Confidence 5689998754
No 8
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.26 E-value=1.5e-07 Score=62.80 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhccccC
Q 041774 18 SWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCVP 59 (382)
Q Consensus 18 ~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~~ 59 (382)
.|++||.|++.+|+.+| +..|+++++.|||+|++++..
T Consensus 2 ~~~~LP~~il~~Il~~l----~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYL----DPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-----HHHHHHHCTT-HHHHHHHTT
T ss_pred CHHHCCHHHHHHHHHHC----cHHHHHHHHHHhhHHHHHHcC
Confidence 47789999999999999 999999999999999998763
No 9
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.12 E-value=1e-06 Score=56.50 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774 22 LPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV 58 (382)
Q Consensus 22 LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~ 58 (382)
||+|++..|+.+| +..|+.+++.|||+||.++.
T Consensus 1 lP~~ll~~I~~~l----~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKL----PPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999 89999999999999999976
No 10
>PHA03098 kelch-like protein; Provisional
Probab=98.01 E-value=0.00087 Score=68.35 Aligned_cols=197 Identities=12% Similarity=0.066 Sum_probs=115.5
Q ss_pred eeeeecCCCcEEEecCCCcC-CCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcc
Q 041774 76 SHLFDTTHKLKYTIKTDPRV-LHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSD 154 (382)
Q Consensus 76 ~~~~~~~~~~~~~~~l~p~~-~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~ 154 (382)
...||+.+++|..+.-.|.. ..+. ..+.+|-|++..+..++. ....+..+||.|+++..+|+++.....
T Consensus 313 v~~yd~~~~~W~~~~~~~~~R~~~~-~~~~~~~lyv~GG~~~~~---------~~~~v~~yd~~~~~W~~~~~lp~~r~~ 382 (534)
T PHA03098 313 VVSYDTKTKSWNKVPELIYPRKNPG-VTVFNNRIYVIGGIYNSI---------SLNTVESWKPGESKWREEPPLIFPRYN 382 (534)
T ss_pred EEEEeCCCCeeeECCCCCcccccce-EEEECCEEEEEeCCCCCE---------ecceEEEEcCCCCceeeCCCcCcCCcc
Confidence 34688888888655321211 1122 233467777665431110 135678899999999998887654332
Q ss_pred eEEEcCCCCCCCeEEEEEEE-eeCC-CeEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEeeC---------Ce
Q 041774 155 KATFSTAPTSLFCTVFVLSV-YYST-RRICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCN---------NV 223 (382)
Q Consensus 155 ~v~~s~~p~s~~~~v~~i~~-~~~~-~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~---------g~ 223 (382)
..+... .+ .+.++.. ...+ ....+..|.+.+++|+.+.....+.....++.++|++|++... ..
T Consensus 383 ~~~~~~----~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 457 (534)
T PHA03098 383 PCVVNV----NN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNI 457 (534)
T ss_pred ceEEEE----CC-EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccce
Confidence 221111 12 2233221 0011 1134678899999999874211122334567889999998621 23
Q ss_pred EEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCc-eEEEEEEEcCCCCEEEcccCC
Q 041774 224 LGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRL-QWLVFRFDLIKENWVEVNRLD 293 (382)
Q Consensus 224 l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~-~~~V~~ld~~~~~W~~v~~Lg 293 (382)
+..||+..++|..++..+. +. ....++..+|+|+++....... .-.|+..|.++.+|..+..+.
T Consensus 458 v~~yd~~~~~W~~~~~~~~-~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 458 VESYNPVTNKWTELSSLNF-PR-----INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred EEEecCCCCceeeCCCCCc-cc-----ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence 8899999999998863221 11 1223556689999887654321 235677888899999887754
No 11
>PHA02713 hypothetical protein; Provisional
Probab=97.95 E-value=0.00088 Score=68.54 Aligned_cols=188 Identities=11% Similarity=0.134 Sum_probs=114.8
Q ss_pred eeeecCCCcEEEecCCCcCCCC-eEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCc--
Q 041774 77 HLFDTTHKLKYTIKTDPRVLHS-KIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSS-- 153 (382)
Q Consensus 77 ~~~~~~~~~~~~~~l~p~~~~~-~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~-- 153 (382)
..|||..+.|..+..-|. ++. ...++.+|-|....+. +|.. ....+..+||.|.++..+|+++....
T Consensus 323 ~~Yd~~~n~W~~~~~m~~-~R~~~~~~~~~g~IYviGG~-~~~~--------~~~sve~Ydp~~~~W~~~~~mp~~r~~~ 392 (557)
T PHA02713 323 YKINIENKIHVELPPMIK-NRCRFSLAVIDDTIYAIGGQ-NGTN--------VERTIECYTMGDDKWKMLPDMPIALSSY 392 (557)
T ss_pred EEEECCCCeEeeCCCCcc-hhhceeEEEECCEEEEECCc-CCCC--------CCceEEEEECCCCeEEECCCCCcccccc
Confidence 357887777755432121 221 2234457877776543 1111 12467889999999999998765432
Q ss_pred ceEEEcCCCCCCCeEEEEEEEeeCC--------------------CeEEEEEEecCCCceEEeecCCcc--cccceEEEE
Q 041774 154 DKATFSTAPTSLFCTVFVLSVYYST--------------------RRICISTCKPGERTWTRHFFDGFY--GDLHGLTYL 211 (382)
Q Consensus 154 ~~v~~s~~p~s~~~~v~~i~~~~~~--------------------~~~~i~~~r~gd~~W~~~~~~~~~--~~~~d~v~~ 211 (382)
..+++. + ++.++.. .++ ....+..|.+..+.|+.+ +.++ .....++.+
T Consensus 393 ~~~~~~------g-~IYviGG-~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v--~~m~~~r~~~~~~~~ 462 (557)
T PHA02713 393 GMCVLD------Q-YIYIIGG-RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL--PNFWTGTIRPGVVSH 462 (557)
T ss_pred cEEEEC------C-EEEEEeC-CCcccccccccccccccccccccccceEEEECCCCCeEeec--CCCCcccccCcEEEE
Confidence 222221 1 1222221 010 013467899999999987 3332 234457899
Q ss_pred CCEEEEEeeC-------CeEEEEEcCC-CCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCceEEEEEEEcCC
Q 041774 212 RGVLYCSFCN-------NVLGAFRVST-NSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIK 283 (382)
Q Consensus 212 ~G~~Y~l~~~-------g~l~~~d~~~-~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~~~~V~~ld~~~ 283 (382)
+|++|++... ..+..||+.. ++|+.++.-+. + ....-++..+|+|+++..+.+. ..|-..|..+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-~-----r~~~~~~~~~~~iyv~Gg~~~~--~~~e~yd~~~ 534 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-R-----LSALHTILHDNTIMMLHCYESY--MLQDTFNVYT 534 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-c-----cccceeEEECCEEEEEeeecce--eehhhcCccc
Confidence 9999999631 1357899998 79998763221 1 1244577889999999876542 2445667788
Q ss_pred CCEEEcccC
Q 041774 284 ENWVEVNRL 292 (382)
Q Consensus 284 ~~W~~v~~L 292 (382)
.+|..+.+-
T Consensus 535 ~~W~~~~~~ 543 (557)
T PHA02713 535 YEWNHICHQ 543 (557)
T ss_pred ccccchhhh
Confidence 999988654
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.93 E-value=0.0011 Score=67.83 Aligned_cols=196 Identities=17% Similarity=0.169 Sum_probs=124.0
Q ss_pred ceeeeecCCCcEEEecCCCcCCCCeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCc-
Q 041774 75 ISHLFDTTHKLKYTIKTDPRVLHSKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSS- 153 (382)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~p~~~~~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~- 153 (382)
....||+.++.|..+.--|.-.....+++-+|-|+.+.+...|+. ..+.+...||.+.++..+|++...+.
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~--------~l~~ve~YD~~~~~W~~~a~M~~~R~~ 373 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSD--------RLSSVERYDPRTNQWTPVAPMNTKRSD 373 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCc--------ccceEEEecCCCCceeccCCccCcccc
Confidence 345789988877655321322122233455787777654321221 23678899999999999999875432
Q ss_pred -ceEEEcCCCCCCCeEEEEEEE-eeCCCeEEEEEEecCCCceEEeecCCcc--cccceEEEECCEEEEEee----C---C
Q 041774 154 -DKATFSTAPTSLFCTVFVLSV-YYSTRRICISTCKPGERTWTRHFFDGFY--GDLHGLTYLRGVLYCSFC----N---N 222 (382)
Q Consensus 154 -~~v~~s~~p~s~~~~v~~i~~-~~~~~~~~i~~~r~gd~~W~~~~~~~~~--~~~~d~v~~~G~~Y~l~~----~---g 222 (382)
..+++. -.+.++.. ........+..|.+..+.|+.+. .+. .....++.++|++|++.. . .
T Consensus 374 ~~v~~l~-------g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 374 FGVAVLD-------GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred ceeEEEC-------CEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeeeEEEEECCEEEEEcCcCCCccccc
Confidence 223331 12333332 01122345778999999999873 232 234457789999999862 1 3
Q ss_pred eEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-ceEEEEEEEcCCCCEEEcccCC
Q 041774 223 VLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR-LQWLVFRFDLIKENWVEVNRLD 293 (382)
Q Consensus 223 ~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg 293 (382)
.+..||+..++|+.++.-.... ...-++..+|.|+.|..+... ..-.|-+.|.++.+|..+..+.
T Consensus 445 sve~YDP~t~~W~~~~~M~~~R------~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTRR------SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred eEEEEcCCCCceeecCCccccc------ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 5788999999999886321110 122367789999999887642 1334788999999999997664
No 13
>PLN02153 epithiospecifier protein
Probab=97.88 E-value=0.0068 Score=58.08 Aligned_cols=199 Identities=12% Similarity=0.106 Sum_probs=110.5
Q ss_pred eeeeecCCCcEEEecCC---CcCCC-CeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCc--
Q 041774 76 SHLFDTTHKLKYTIKTD---PRVLH-SKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLH-- 149 (382)
Q Consensus 76 ~~~~~~~~~~~~~~~l~---p~~~~-~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~-- 149 (382)
...||+...+|..+... |.... ...+.+.++-|++......+ .....++.+||.|.++..++++.
T Consensus 52 ~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~---------~~~~~v~~yd~~t~~W~~~~~~~~~ 122 (341)
T PLN02153 52 LYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK---------REFSDFYSYDTVKNEWTFLTKLDEE 122 (341)
T ss_pred EEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC---------CccCcEEEEECCCCEEEEeccCCCC
Confidence 34688888888765321 22111 11123346666666432111 01257889999999998887652
Q ss_pred ---ccCcc-eEEEcCCCCCCCeEEEEEEE-eeCC------CeEEEEEEecCCCceEEeecCC---cccccceEEEECCEE
Q 041774 150 ---MFSSD-KATFSTAPTSLFCTVFVLSV-YYST------RRICISTCKPGERTWTRHFFDG---FYGDLHGLTYLRGVL 215 (382)
Q Consensus 150 ---~~~~~-~v~~s~~p~s~~~~v~~i~~-~~~~------~~~~i~~~r~gd~~W~~~~~~~---~~~~~~d~v~~~G~~ 215 (382)
..... .++.. .+ ++.++.. ...+ ....+..|.+.++.|+.+.... .+.....++.++|++
T Consensus 123 ~~p~~R~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~i 196 (341)
T PLN02153 123 GGPEARTFHSMASD-----EN-HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKI 196 (341)
T ss_pred CCCCCceeeEEEEE-----CC-EEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeE
Confidence 11111 11110 11 2222221 0000 1124677999999999874321 112223467789999
Q ss_pred EEEee--------------CCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCC----------C
Q 041774 216 YCSFC--------------NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSH----------R 271 (382)
Q Consensus 216 Y~l~~--------------~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~----------~ 271 (382)
|++.. ...+.+||+...+|..+......|.. ....-.+..+|+|+++.-... .
T Consensus 197 yv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 273 (341)
T PLN02153 197 WVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA---RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGT 273 (341)
T ss_pred EEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC---cceeeeEEECCEEEEECcccCCcccccccccc
Confidence 99741 24688999999999987531001110 012234556788888876421 1
Q ss_pred ceEEEEEEEcCCCCEEEcccC
Q 041774 272 LQWLVFRFDLIKENWVEVNRL 292 (382)
Q Consensus 272 ~~~~V~~ld~~~~~W~~v~~L 292 (382)
..-.||.+|.++.+|.++...
T Consensus 274 ~~n~v~~~d~~~~~W~~~~~~ 294 (341)
T PLN02153 274 LSNEGYALDTETLVWEKLGEC 294 (341)
T ss_pred ccccEEEEEcCccEEEeccCC
Confidence 123799999999999998754
No 14
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=97.74 E-value=0.00097 Score=56.88 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=56.3
Q ss_pred EEECCEEEEEeeC--C----eEEEEEcCCCCe-EEeccCCCCCCcceeeceeEE-EEeCCcEEEEEEeCCCceEEEEEEE
Q 041774 209 TYLRGVLYCSFCN--N----VLGAFRVSTNSW-KIYPHNRIRPTSVYLYYGLIE-SEHEGSLLSVYYDSHRLQWLVFRFD 280 (382)
Q Consensus 209 v~~~G~~Y~l~~~--g----~l~~~d~~~~~~-~~~~~p~~~~~~~~~~~~~~L-Ve~~G~LllV~~~~~~~~~~V~~ld 280 (382)
|+.||.+|+++.. + .|++||+..+++ +.++.|..... ......| +..+|.|.++........++||.|+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~---~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~ 78 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDD---DDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK 78 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCc---cCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence 7899999999732 2 599999999999 77776543221 1133455 4457788888654433369999999
Q ss_pred c---CCCCEEEcccC
Q 041774 281 L---IKENWVEVNRL 292 (382)
Q Consensus 281 ~---~~~~W~~v~~L 292 (382)
+ ...+|.|+-++
T Consensus 79 ~~~~~~~SWtK~~~i 93 (164)
T PF07734_consen 79 KYGYGKESWTKLFTI 93 (164)
T ss_pred eeccCcceEEEEEEE
Confidence 5 26789997543
No 15
>PHA03098 kelch-like protein; Provisional
Probab=97.66 E-value=0.0039 Score=63.60 Aligned_cols=150 Identities=19% Similarity=0.249 Sum_probs=95.3
Q ss_pred ceEEEEcCCCCceeeCCCCcccCc--ceEEEcCCCCCCCeEEEEEEEeeC--CCeEEEEEEecCCCceEEeecCCccccc
Q 041774 130 SSLFFYNPFSASIIELPPLHMFSS--DKATFSTAPTSLFCTVFVLSVYYS--TRRICISTCKPGERTWTRHFFDGFYGDL 205 (382)
Q Consensus 130 ~~~~l~NP~T~~~i~LP~~~~~~~--~~v~~s~~p~s~~~~v~~i~~~~~--~~~~~i~~~r~gd~~W~~~~~~~~~~~~ 205 (382)
..++.+||.|+++..+|+++.... ..+++. +. +.++.. .. .....+..|.+.++.|+....-..+...
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~------~~-lyv~GG-~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~ 382 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGVTVFN------NR-IYVIGG-IYNSISLNTVESWKPGESKWREEPPLIFPRYN 382 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceEEEEC------CE-EEEEeC-CCCCEecceEEEEcCCCCceeeCCCcCcCCcc
Confidence 478899999999999998764322 222221 22 333332 11 1113466789999999986321122233
Q ss_pred ceEEEECCEEEEEeeC-------CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC----ceE
Q 041774 206 HGLTYLRGVLYCSFCN-------NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR----LQW 274 (382)
Q Consensus 206 ~d~v~~~G~~Y~l~~~-------g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~----~~~ 274 (382)
..++..+|++|++... ..+..||+..++|+.++..|.. . .....+..+|.|+++...... ..-
T Consensus 383 ~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 456 (534)
T PHA03098 383 PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-H-----YGGCAIYHDGKIYVIGGISYIDNIKVYN 456 (534)
T ss_pred ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-c-----cCceEEEECCEEEEECCccCCCCCcccc
Confidence 4456789999998631 3588999999999987643321 1 122356678999888764321 112
Q ss_pred EEEEEEcCCCCEEEcccCC
Q 041774 275 LVFRFDLIKENWVEVNRLD 293 (382)
Q Consensus 275 ~V~~ld~~~~~W~~v~~Lg 293 (382)
.|+..|.++.+|.++..+.
T Consensus 457 ~v~~yd~~~~~W~~~~~~~ 475 (534)
T PHA03098 457 IVESYNPVTNKWTELSSLN 475 (534)
T ss_pred eEEEecCCCCceeeCCCCC
Confidence 3888899999999998765
No 16
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.55 E-value=0.0084 Score=61.44 Aligned_cols=188 Identities=17% Similarity=0.195 Sum_probs=118.3
Q ss_pred eeeeecCCCcEEEecCCCcC--CCCeE-EEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccC
Q 041774 76 SHLFDTTHKLKYTIKTDPRV--LHSKI-KASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFS 152 (382)
Q Consensus 76 ~~~~~~~~~~~~~~~l~p~~--~~~~~-~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~ 152 (382)
...|||..++|..+ |.+ .+..+ +++.+|-|..+.+. +|.. .-..+--.+|.|.++-..+++....
T Consensus 351 ve~YD~~~~~W~~~---a~M~~~R~~~~v~~l~g~iYavGG~-dg~~--------~l~svE~YDp~~~~W~~va~m~~~r 418 (571)
T KOG4441|consen 351 VERYDPRTNQWTPV---APMNTKRSDFGVAVLDGKLYAVGGF-DGEK--------SLNSVECYDPVTNKWTPVAPMLTRR 418 (571)
T ss_pred EEEecCCCCceecc---CCccCccccceeEEECCEEEEEecc-cccc--------ccccEEEecCCCCcccccCCCCcce
Confidence 34678887777653 222 22211 35568877777543 2221 1246778899999998888775433
Q ss_pred cc--eEEEcCCCCCCCeEEEEEEE-eeCC-CeEEEEEEecCCCceEEeecCCcc--cccceEEEECCEEEEEee-CC---
Q 041774 153 SD--KATFSTAPTSLFCTVFVLSV-YYST-RRICISTCKPGERTWTRHFFDGFY--GDLHGLTYLRGVLYCSFC-NN--- 222 (382)
Q Consensus 153 ~~--~v~~s~~p~s~~~~v~~i~~-~~~~-~~~~i~~~r~gd~~W~~~~~~~~~--~~~~d~v~~~G~~Y~l~~-~g--- 222 (382)
+. .+++. + ++.++.. .... ....+..|.|..+.|+.+ +.|. ....-++..||++|++.. +|
T Consensus 419 ~~~gv~~~~------g-~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~--~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~ 489 (571)
T KOG4441|consen 419 SGHGVAVLG------G-KLYIIGGGDGSSNCLNSVECYDPETNTWTLI--APMNTRRSGFGVAVLNGKIYVVGGFDGTSA 489 (571)
T ss_pred eeeEEEEEC------C-EEEEEcCcCCCccccceEEEEcCCCCceeec--CCcccccccceEEEECCEEEEECCccCCCc
Confidence 32 22231 1 1222221 0111 124567899999999987 4443 344558899999999963 22
Q ss_pred --eEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC---ceEEEEEEEcCCCCEEEcccC
Q 041774 223 --VLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR---LQWLVFRFDLIKENWVEVNRL 292 (382)
Q Consensus 223 --~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~---~~~~V~~ld~~~~~W~~v~~L 292 (382)
.+-+||+..++|..+.... .+. ....++..+|+|++|..+... ..+++| |.+..+|.++..+
T Consensus 490 ~~~VE~ydp~~~~W~~v~~m~-~~r-----s~~g~~~~~~~ly~vGG~~~~~~l~~ve~y--dp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 490 LSSVERYDPETNQWTMVAPMT-SPR-----SAVGVVVLGGKLYAVGGFDGNNNLNTVECY--DPETDTWTEVTEP 556 (571)
T ss_pred cceEEEEcCCCCceeEcccCc-ccc-----ccccEEEECCEEEEEecccCccccceeEEc--CCCCCceeeCCCc
Confidence 3778999999999885321 111 344578889999999986642 267776 8899999998763
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.47 E-value=0.019 Score=54.58 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=68.7
Q ss_pred EEEEEecCCCceE--EeecCCccc--ccceEEEECCEEEEEee------CCeEEEEEcCCCCeEEeccCCCCCCcceeec
Q 041774 182 CISTCKPGERTWT--RHFFDGFYG--DLHGLTYLRGVLYCSFC------NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYY 251 (382)
Q Consensus 182 ~i~~~r~gd~~W~--~~~~~~~~~--~~~d~v~~~G~~Y~l~~------~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~ 251 (382)
.+..+...++.|+ +...+.++. ....++.++|++|++.. ...+.+||+..++|+.++..+..+. .
T Consensus 89 ~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r-----~ 163 (323)
T TIGR03548 89 SVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR-----V 163 (323)
T ss_pred eEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC-----C
Confidence 4555666677772 112233332 23456778999999863 2368999999999998853121111 2
Q ss_pred eeEEEEeCCcEEEEEEeCCCceEEEEEEEcCCCCEEEcccCC
Q 041774 252 GLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLD 293 (382)
Q Consensus 252 ~~~LVe~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg 293 (382)
....+..+|+|+++.-........+++.|.++.+|.++..+.
T Consensus 164 ~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~ 205 (323)
T TIGR03548 164 QPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPT 205 (323)
T ss_pred cceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCC
Confidence 234567789999887654322345678899999999998763
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.44 E-value=0.06 Score=51.14 Aligned_cols=157 Identities=11% Similarity=0.020 Sum_probs=89.2
Q ss_pred ceEEEEcCCCCce----eeCCCCcccCcc--eEEEcCCCCCCCeEEEEEEEeeC-CCeEEEEEEecCCCceEEee-cCCc
Q 041774 130 SSLFFYNPFSASI----IELPPLHMFSSD--KATFSTAPTSLFCTVFVLSVYYS-TRRICISTCKPGERTWTRHF-FDGF 201 (382)
Q Consensus 130 ~~~~l~NP~T~~~----i~LP~~~~~~~~--~v~~s~~p~s~~~~v~~i~~~~~-~~~~~i~~~r~gd~~W~~~~-~~~~ 201 (382)
..+..+|+.+.++ ..+|+++..... .+++. + ++.++..... .....+..|.+.++.|+.+. .+..
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~------~-~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 160 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSACYKD------G-TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE 160 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC------C-EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC
Confidence 5778889988875 667777543221 22221 1 2333322001 11235677889999999874 2211
Q ss_pred ccccceEEEECCEEEEEeeC-----CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC-----
Q 041774 202 YGDLHGLTYLRGVLYCSFCN-----NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR----- 271 (382)
Q Consensus 202 ~~~~~d~v~~~G~~Y~l~~~-----g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~----- 271 (382)
.....-++.++|++|++... ..+.+||+..++|+.++..+....-........++..+|+|+++.-....
T Consensus 161 ~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 240 (323)
T TIGR03548 161 PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDA 240 (323)
T ss_pred CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHH
Confidence 12233456789999999631 24678999999999886321100000000122244456788877654310
Q ss_pred ----------------------------ceEEEEEEEcCCCCEEEcccCC
Q 041774 272 ----------------------------LQWLVFRFDLIKENWVEVNRLD 293 (382)
Q Consensus 272 ----------------------------~~~~V~~ld~~~~~W~~v~~Lg 293 (382)
..-.|+..|..+.+|.++..+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 290 (323)
T TIGR03548 241 VIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP 290 (323)
T ss_pred HhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc
Confidence 0125888888889999988664
No 19
>PLN02193 nitrile-specifier protein
Probab=97.42 E-value=0.053 Score=54.41 Aligned_cols=202 Identities=11% Similarity=0.132 Sum_probs=112.7
Q ss_pred eeeeecCCCcEEEecCC---CcCCC-CeEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCc--
Q 041774 76 SHLFDTTHKLKYTIKTD---PRVLH-SKIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLH-- 149 (382)
Q Consensus 76 ~~~~~~~~~~~~~~~l~---p~~~~-~~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~-- 149 (382)
...||+.+.+|..+... |.... .......++-|++..... +. ...+.++.+||.|.++..++++.
T Consensus 195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~-~~--------~~~ndv~~yD~~t~~W~~l~~~~~~ 265 (470)
T PLN02193 195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRD-AS--------RQYNGFYSFDTTTNEWKLLTPVEEG 265 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCC-CC--------CCCccEEEEECCCCEEEEcCcCCCC
Confidence 34688888887755321 22111 111233466666654321 10 11367889999999998887652
Q ss_pred -ccCcceEEEcCCCCCCCeEEEEEEE-eeCCCeEEEEEEecCCCceEEeecCC-c--ccccceEEEECCEEEEEee----
Q 041774 150 -MFSSDKATFSTAPTSLFCTVFVLSV-YYSTRRICISTCKPGERTWTRHFFDG-F--YGDLHGLTYLRGVLYCSFC---- 220 (382)
Q Consensus 150 -~~~~~~v~~s~~p~s~~~~v~~i~~-~~~~~~~~i~~~r~gd~~W~~~~~~~-~--~~~~~d~v~~~G~~Y~l~~---- 220 (382)
..+....+... .+ ++.++.. ........+..|.+.+++|+.+..+. . +.....++.++|++|++..
T Consensus 266 P~~R~~h~~~~~----~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~ 340 (470)
T PLN02193 266 PTPRSFHSMAAD----EE-NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC 340 (470)
T ss_pred CCCccceEEEEE----CC-EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC
Confidence 11111111100 11 2222221 00111234667888999999875321 1 1223346678999999852
Q ss_pred -CCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCC----------CceEEEEEEEcCCCCEEEc
Q 041774 221 -NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSH----------RLQWLVFRFDLIKENWVEV 289 (382)
Q Consensus 221 -~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~----------~~~~~V~~ld~~~~~W~~v 289 (382)
...+.+||+...+|+.++.....|.- ....-.+..+++|+++.-... ...-.+|.+|..+.+|.++
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~g~~P~~---R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETFGVRPSE---RSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred ccCceEEEECCCCEEEEeccCCCCCCC---cceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 24689999999999987531001100 012234556788888866431 0122589999999999999
Q ss_pred ccCCC
Q 041774 290 NRLDD 294 (382)
Q Consensus 290 ~~Lg~ 294 (382)
..++.
T Consensus 418 ~~~~~ 422 (470)
T PLN02193 418 DKFGE 422 (470)
T ss_pred ccCCC
Confidence 87764
No 20
>PLN02153 epithiospecifier protein
Probab=97.41 E-value=0.023 Score=54.47 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=92.0
Q ss_pred ceEEEEcCCCCceeeCCCCcc-cCc-----ceEEEcCCCCCCCeEEEEEEE-eeCCCeEEEEEEecCCCceEEeecC---
Q 041774 130 SSLFFYNPFSASIIELPPLHM-FSS-----DKATFSTAPTSLFCTVFVLSV-YYSTRRICISTCKPGERTWTRHFFD--- 199 (382)
Q Consensus 130 ~~~~l~NP~T~~~i~LP~~~~-~~~-----~~v~~s~~p~s~~~~v~~i~~-~~~~~~~~i~~~r~gd~~W~~~~~~--- 199 (382)
+.++.+|+.+.++..+|+... ... ..+++. + ++.++.. .....+..+..|.+..+.|+.+...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~------~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~ 122 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG------T-KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEE 122 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC------C-EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCC
Confidence 578899999999988876532 111 112221 1 2333322 0111123567888999999987421
Q ss_pred --CcccccceEEEECCEEEEEeeC------------CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEE
Q 041774 200 --GFYGDLHGLTYLRGVLYCSFCN------------NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSV 265 (382)
Q Consensus 200 --~~~~~~~d~v~~~G~~Y~l~~~------------g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV 265 (382)
..+.....++..+|++|++... ..+.+||+..++|+.++.+...+.. ....-++..+|+|+++
T Consensus 123 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~---r~~~~~~~~~~~iyv~ 199 (341)
T PLN02153 123 GGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEK---RGGAGFAVVQGKIWVV 199 (341)
T ss_pred CCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCC---CCcceEEEECCeEEEE
Confidence 1112334567789999998521 2478899999999987643111100 0122356678999888
Q ss_pred EEeCC--------C-ceEEEEEEEcCCCCEEEcccCC
Q 041774 266 YYDSH--------R-LQWLVFRFDLIKENWVEVNRLD 293 (382)
Q Consensus 266 ~~~~~--------~-~~~~V~~ld~~~~~W~~v~~Lg 293 (382)
.-... . ..-.|+.+|.++.+|+++...|
T Consensus 200 GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 200 YGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred eccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 64321 1 1235778888999999998665
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=97.39 E-value=0.011 Score=59.44 Aligned_cols=158 Identities=11% Similarity=0.141 Sum_probs=98.8
Q ss_pred ceEEEEcCCCCceeeCCCCcccCc--ceEEEcCCCCCCCeEEEEEEEeeCCCeEEEEEEecCCCceEEeecCCcc--ccc
Q 041774 130 SSLFFYNPFSASIIELPPLHMFSS--DKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFY--GDL 205 (382)
Q Consensus 130 ~~~~l~NP~T~~~i~LP~~~~~~~--~~v~~s~~p~s~~~~v~~i~~~~~~~~~~i~~~r~gd~~W~~~~~~~~~--~~~ 205 (382)
..+...||.++++..+|+++.... ..+++. + .+.++.. ..+ ...+..|.+..+.|+.+ +.++ ...
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~------~-~iYviGG-~~~-~~sve~ydp~~n~W~~~--~~l~~~r~~ 355 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYASGVPAN------N-KLYVVGG-LPN-PTSVERWFHGDAAWVNM--PSLLKPRCN 355 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcceEEEEC------C-EEEEECC-cCC-CCceEEEECCCCeEEEC--CCCCCCCcc
Confidence 467788999999999998864322 122221 1 2333332 111 12356788899999987 4443 233
Q ss_pred ceEEEECCEEEEEeeC----CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCceEEEEEEEc
Q 041774 206 HGLTYLRGVLYCSFCN----NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDL 281 (382)
Q Consensus 206 ~d~v~~~G~~Y~l~~~----g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~~~~V~~ld~ 281 (382)
..++.++|++|++... ..+..||+..++|+.++..+. +. .....+..+|+|+++.. ..++ .|.
T Consensus 356 ~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~-~r-----~~~~~~~~~~~IYv~GG-----~~e~--ydp 422 (480)
T PHA02790 356 PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY-PH-----YKSCALVFGRRLFLVGR-----NAEF--YCE 422 (480)
T ss_pred cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC-cc-----ccceEEEECCEEEEECC-----ceEE--ecC
Confidence 4567899999999631 346789999999998754322 11 22345678999999863 2344 466
Q ss_pred CCCCEEEcccCCCcEEEEcCCCeeeeeccCCCCcCCCeEEEc
Q 041774 282 IKENWVEVNRLDDRALFLNPSSTSMKLAVDDASELANTIHVE 323 (382)
Q Consensus 282 ~~~~W~~v~~Lg~~alFlg~~~s~~~~~~~~~g~~~N~IYf~ 323 (382)
++.+|..+.+|.-. +. ..++ ...+|.||..
T Consensus 423 ~~~~W~~~~~m~~~-----r~-~~~~------~v~~~~IYvi 452 (480)
T PHA02790 423 SSNTWTLIDDPIYP-----RD-NPEL------IIVDNKLLLI 452 (480)
T ss_pred CCCcEeEcCCCCCC-----cc-ccEE------EEECCEEEEE
Confidence 78999999887531 11 1111 1246799999
No 22
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.32 E-value=0.039 Score=52.93 Aligned_cols=152 Identities=15% Similarity=0.107 Sum_probs=90.5
Q ss_pred ceEEEEcC--CCCceeeCCCCcc-cCcc--eEEEcCCCCCCCeEEEEEEEe-eCC------CeEEEEEEecCCCceEEee
Q 041774 130 SSLFFYNP--FSASIIELPPLHM-FSSD--KATFSTAPTSLFCTVFVLSVY-YST------RRICISTCKPGERTWTRHF 197 (382)
Q Consensus 130 ~~~~l~NP--~T~~~i~LP~~~~-~~~~--~v~~s~~p~s~~~~v~~i~~~-~~~------~~~~i~~~r~gd~~W~~~~ 197 (382)
..++.+|+ .+.++..+|+++. .... .+++. -.+.++... ... ....+..|.+..++|+.+.
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~-------~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~ 101 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID-------GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD 101 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEEEEC-------CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCC
Confidence 45666664 6778899988752 2221 22221 123333220 000 0124667899999999874
Q ss_pred cCCccccc-c-eEE-EECCEEEEEeeC----------------------------------------CeEEEEEcCCCCe
Q 041774 198 FDGFYGDL-H-GLT-YLRGVLYCSFCN----------------------------------------NVLGAFRVSTNSW 234 (382)
Q Consensus 198 ~~~~~~~~-~-d~v-~~~G~~Y~l~~~----------------------------------------g~l~~~d~~~~~~ 234 (382)
. .++... . ..+ .++|++|++... ..+.+||+..++|
T Consensus 102 ~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W 180 (346)
T TIGR03547 102 T-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQW 180 (346)
T ss_pred C-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCce
Confidence 2 222211 1 123 689999998521 3588999999999
Q ss_pred EEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCC---C-ceEEEEEEEcCCCCEEEcccCCC
Q 041774 235 KIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSH---R-LQWLVFRFDLIKENWVEVNRLDD 294 (382)
Q Consensus 235 ~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~---~-~~~~V~~ld~~~~~W~~v~~Lg~ 294 (382)
+.++..+..+. ...-++..+|+|+++.-... . ..+.+|.+|.++.+|.++..|..
T Consensus 181 ~~~~~~p~~~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~ 239 (346)
T TIGR03547 181 RNLGENPFLGT-----AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP 239 (346)
T ss_pred eECccCCCCcC-----CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence 98863221111 23345667899999976532 1 14555667777789999998853
No 23
>PLN02193 nitrile-specifier protein
Probab=97.26 E-value=0.041 Score=55.22 Aligned_cols=155 Identities=12% Similarity=0.073 Sum_probs=92.6
Q ss_pred ceEEEEcCCCCceeeCCCCc-ccC---cc--eEEEcCCCCCCCeEEEEEEE-eeCCCeEEEEEEecCCCceEEeecC---
Q 041774 130 SSLFFYNPFSASIIELPPLH-MFS---SD--KATFSTAPTSLFCTVFVLSV-YYSTRRICISTCKPGERTWTRHFFD--- 199 (382)
Q Consensus 130 ~~~~l~NP~T~~~i~LP~~~-~~~---~~--~v~~s~~p~s~~~~v~~i~~-~~~~~~~~i~~~r~gd~~W~~~~~~--- 199 (382)
..++.+|+.+.++..+|+.. .+. .. .+++. + ++.++.. .....+..+..|.+..+.|+.+...
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~------~-~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~ 265 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG------S-TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEG 265 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC------C-EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCC
Confidence 46889999999998776532 111 11 11111 1 1222221 0011123567788999999987421
Q ss_pred CcccccceEEEECCEEEEEee------CCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCce
Q 041774 200 GFYGDLHGLTYLRGVLYCSFC------NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQ 273 (382)
Q Consensus 200 ~~~~~~~d~v~~~G~~Y~l~~------~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~~ 273 (382)
..+.....++..++++|++.- ...+.+||+...+|+.++.+...+.. ....-++..+|+++++.-......
T Consensus 266 P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~---R~~~~~~~~~gkiyviGG~~g~~~ 342 (470)
T PLN02193 266 PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSI---RGGAGLEVVQGKVWVVYGFNGCEV 342 (470)
T ss_pred CCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCC---CCCcEEEEECCcEEEEECCCCCcc
Confidence 112334456778999999862 23578999999999987643111110 012335567899988876432213
Q ss_pred EEEEEEEcCCCCEEEcccCCC
Q 041774 274 WLVFRFDLIKENWVEVNRLDD 294 (382)
Q Consensus 274 ~~V~~ld~~~~~W~~v~~Lg~ 294 (382)
-.|+.+|.++.+|.++..+|.
T Consensus 343 ~dv~~yD~~t~~W~~~~~~g~ 363 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVETFGV 363 (470)
T ss_pred CceEEEECCCCEEEEeccCCC
Confidence 457788888999999987753
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.19 E-value=0.081 Score=51.45 Aligned_cols=107 Identities=16% Similarity=0.079 Sum_probs=70.7
Q ss_pred EEEEEecCCCceEEeecCCcccc--cceEEE-ECCEEEEEeeC-------------------------------------
Q 041774 182 CISTCKPGERTWTRHFFDGFYGD--LHGLTY-LRGVLYCSFCN------------------------------------- 221 (382)
Q Consensus 182 ~i~~~r~gd~~W~~~~~~~~~~~--~~d~v~-~~G~~Y~l~~~------------------------------------- 221 (382)
.+..|.+..++|+.+.. ..+.. ....+. .+|++|++...
T Consensus 107 ~v~~YD~~~n~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDY 185 (376)
T ss_pred cEEEEeCCCCEEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhc
Confidence 46678899999999742 11211 122233 89999999531
Q ss_pred ---CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCC---C-ceEEEEEEEcCCCCEEEcccCCC
Q 041774 222 ---NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSH---R-LQWLVFRFDLIKENWVEVNRLDD 294 (382)
Q Consensus 222 ---g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~---~-~~~~V~~ld~~~~~W~~v~~Lg~ 294 (382)
..+..||+..++|..+...+..+. ...-+|..+++|+++.-... + ..+.+|++|.+..+|.++..+..
T Consensus 186 ~~~~~v~~YD~~t~~W~~~~~~p~~~~-----~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~ 260 (376)
T PRK14131 186 FFNKEVLSYDPSTNQWKNAGESPFLGT-----AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPP 260 (376)
T ss_pred CcCceEEEEECCCCeeeECCcCCCCCC-----CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCC
Confidence 358899999999998763332111 23346677899999876432 1 14556677778899999998853
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00029 Score=64.42 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774 18 SWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV 58 (382)
Q Consensus 18 ~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~ 58 (382)
.|..||+||+..|++.| +.+++++...|||+|+.+..
T Consensus 97 ~~~slpDEill~IFs~L----~kk~LL~~~~VC~Rfyr~~~ 133 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCL----CKKELLKVSGVCKRFYRLAS 133 (419)
T ss_pred CcccCCHHHHHHHHHhc----cHHHHHHHHHHHHHHhhccc
Confidence 49999999999999999 99999999999999998865
No 26
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.60 E-value=2.2 Score=40.71 Aligned_cols=126 Identities=12% Similarity=0.105 Sum_probs=73.1
Q ss_pred EEEEEecCCCceEEeecCCcc---cccceEEEECCEEEEEeeC-------CeEEEEEc--CCCCeEEeccCCCCCCccee
Q 041774 182 CISTCKPGERTWTRHFFDGFY---GDLHGLTYLRGVLYCSFCN-------NVLGAFRV--STNSWKIYPHNRIRPTSVYL 249 (382)
Q Consensus 182 ~i~~~r~gd~~W~~~~~~~~~---~~~~d~v~~~G~~Y~l~~~-------g~l~~~d~--~~~~~~~~~~p~~~~~~~~~ 249 (382)
.+..|.+.++.|+.+. .++ .....++.++|++|++... ..+..+|+ ...+|..++.-+........
T Consensus 169 ~v~~YDp~t~~W~~~~--~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~ 246 (346)
T TIGR03547 169 NVLSYDPSTNQWRNLG--ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE 246 (346)
T ss_pred eEEEEECCCCceeECc--cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc
Confidence 5778999999999873 332 2234567889999998621 13455665 44589877532111000000
Q ss_pred -eceeEEEEeCCcEEEEEEeCC-----------------C---ceEEEEEEEcCCCCEEEcccCCCcEEEEcCCCeeeee
Q 041774 250 -YYGLIESEHEGSLLSVYYDSH-----------------R---LQWLVFRFDLIKENWVEVNRLDDRALFLNPSSTSMKL 308 (382)
Q Consensus 250 -~~~~~LVe~~G~LllV~~~~~-----------------~---~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~ 308 (382)
......+..+|+|+++.-... . ..+++|.. ++.+|+++..|....-. .+ .
T Consensus 247 ~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~--~~~~W~~~~~lp~~~~~------~~-~ 317 (346)
T TIGR03547 247 GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYAL--DNGKWSKVGKLPQGLAY------GV-S 317 (346)
T ss_pred cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEe--cCCcccccCCCCCCcee------eE-E
Confidence 012236778999999876421 0 13455544 56789999887632110 11 1
Q ss_pred ccCCCCcCCCeEEEc
Q 041774 309 AVDDASELANTIHVE 323 (382)
Q Consensus 309 ~~~~~g~~~N~IYf~ 323 (382)
...+|.||+.
T Consensus 318 -----~~~~~~iyv~ 327 (346)
T TIGR03547 318 -----VSWNNGVLLI 327 (346)
T ss_pred -----EEcCCEEEEE
Confidence 1257899998
No 27
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.14 E-value=2.6 Score=40.93 Aligned_cols=144 Identities=9% Similarity=0.077 Sum_probs=78.2
Q ss_pred ceEEEEcCCCCceeeCCCCccc-Ccc-eEEEcCCCCCCCeEEEEEEE-eeCC-CeEEE--EEEecCCCceEEeecCCccc
Q 041774 130 SSLFFYNPFSASIIELPPLHMF-SSD-KATFSTAPTSLFCTVFVLSV-YYST-RRICI--STCKPGERTWTRHFFDGFYG 203 (382)
Q Consensus 130 ~~~~l~NP~T~~~i~LP~~~~~-~~~-~v~~s~~p~s~~~~v~~i~~-~~~~-~~~~i--~~~r~gd~~W~~~~~~~~~~ 203 (382)
..+..+||.|.++..+++++.. ... .++.. .+ ++.++.. ...+ ....+ .-+.+.++.|+.+. .++.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-----~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~--~~p~ 260 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-----GN-KLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP--DLPP 260 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEE-----CC-EEEEEeeeECCCcCChhheEEEecCCCcceeecC--CCCC
Confidence 5688999999999998877642 211 11111 11 2333322 0011 11112 22456778999863 2211
Q ss_pred --------ccce--EEEECCEEEEEeeCC-----------------------eEEEEEcCCCCeEEeccCCCCCCcceee
Q 041774 204 --------DLHG--LTYLRGVLYCSFCNN-----------------------VLGAFRVSTNSWKIYPHNRIRPTSVYLY 250 (382)
Q Consensus 204 --------~~~d--~v~~~G~~Y~l~~~g-----------------------~l~~~d~~~~~~~~~~~p~~~~~~~~~~ 250 (382)
.... .+..+|++|++.... .+-+||+..++|+.+..-|. +.
T Consensus 261 ~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~-~r----- 334 (376)
T PRK14131 261 APGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ-GL----- 334 (376)
T ss_pred CCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCC-Cc-----
Confidence 1111 356899999986311 13468998889987643221 11
Q ss_pred ceeEEEEeCCcEEEEEEeCC--CceEEEEEEEcCCCCEE
Q 041774 251 YGLIESEHEGSLLSVYYDSH--RLQWLVFRFDLIKENWV 287 (382)
Q Consensus 251 ~~~~LVe~~G~LllV~~~~~--~~~~~V~~ld~~~~~W~ 287 (382)
...-.|..+|+|+++.-... ...=.|+.++.+..+++
T Consensus 335 ~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 335 AYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred cceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 12246778999999987542 12345555655445554
No 28
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.70 E-value=5 Score=36.85 Aligned_cols=121 Identities=16% Similarity=0.236 Sum_probs=73.2
Q ss_pred EEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcceEEEcCCCCCCCeEEEEEEEeeCCC
Q 041774 100 IKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTR 179 (382)
Q Consensus 100 ~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~v~~s~~p~s~~~~v~~i~~~~~~~ 179 (382)
+|.+.+|=+..+.-. .+.+..+||+++.--.+|+........-...++|. .-+.|.. . +.
T Consensus 194 i~atpdGsvwyasla--------------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpi----g~~witt-w-g~ 253 (353)
T COG4257 194 ICATPDGSVWYASLA--------------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPI----GRAWITT-W-GT 253 (353)
T ss_pred eEECCCCcEEEEecc--------------ccceEEcccccCCcceecCCCcccccccccccCcc----CcEEEec-c-CC
Confidence 566677766666332 25778899999976555554321011112233332 2345554 1 11
Q ss_pred eEEEEEEecCCCceEEeecCCcc-cccceEEEECCEEEEEe-eCCeEEEEEcCCCCeEEeccCC
Q 041774 180 RICISTCKPGERTWTRHFFDGFY-GDLHGLTYLRGVLYCSF-CNNVLGAFRVSTNSWKIYPHNR 241 (382)
Q Consensus 180 ~~~i~~~r~gd~~W~~~~~~~~~-~~~~d~v~~~G~~Y~l~-~~g~l~~~d~~~~~~~~~~~p~ 241 (382)
-++..+++.+.+|....++... ..++--|=-.|+++.-+ ..|.|..||+...++.+++.|.
T Consensus 254 -g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr 316 (353)
T COG4257 254 -GSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPR 316 (353)
T ss_pred -ceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCCC
Confidence 3677889999999988766531 22221222457777644 5789999999999999998763
No 29
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=92.06 E-value=0.29 Score=30.73 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=24.6
Q ss_pred CCCceEEeecCCcccccceEEEECCEEEEEeeCCeEEEEEcC
Q 041774 189 GERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVS 230 (382)
Q Consensus 189 gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~g~l~~~d~~ 230 (382)
|+..|+.- .+. .....+++.+|++|+.+.+|.|+++|..
T Consensus 1 G~~~W~~~-~~~--~~~~~~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 1 GKVLWSYD-TGG--PIWSSPAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp S-EEEEEE--SS-----S--EECTSEEEEE-TTSEEEEEETT
T ss_pred CceeEEEE-CCC--CcCcCCEEECCEEEEEcCCCEEEEEeCC
Confidence 34567753 222 2345678899999999999999999975
No 30
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=90.96 E-value=2.1 Score=41.37 Aligned_cols=141 Identities=16% Similarity=0.092 Sum_probs=81.0
Q ss_pred EEEEEecCCCceEEeecCCccc--ccceEEEECCEEEEE------e----eCCeEEEEEcCCCCeEEeccCCCCCCccee
Q 041774 182 CISTCKPGERTWTRHFFDGFYG--DLHGLTYLRGVLYCS------F----CNNVLGAFRVSTNSWKIYPHNRIRPTSVYL 249 (382)
Q Consensus 182 ~i~~~r~gd~~W~~~~~~~~~~--~~~d~v~~~G~~Y~l------~----~~g~l~~~d~~~~~~~~~~~p~~~~~~~~~ 249 (382)
.++.+...+..|+.+..+.-|+ .-.-||..+-+|... + ....|++||++.-+|..+..+-..|. ..
T Consensus 155 D~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Pt--pR 232 (521)
T KOG1230|consen 155 DLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPT--PR 232 (521)
T ss_pred heeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCC--CC
Confidence 3455566778999987654321 222344444333332 1 23479999999988988753211111 01
Q ss_pred eceeEEEEeCCcEEEEEEeCC----------CceEEEEEEEcCC-----CCEEEcccCC----------------CcEEE
Q 041774 250 YYGLIESEHEGSLLSVYYDSH----------RLQWLVFRFDLIK-----ENWVEVNRLD----------------DRALF 298 (382)
Q Consensus 250 ~~~~~LVe~~G~LllV~~~~~----------~~~~~V~~ld~~~-----~~W~~v~~Lg----------------~~alF 298 (382)
....+.|..+|.+++-..+.. .+.-..|.|+.+. -.|.+|.-.| +++||
T Consensus 233 SGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~ 312 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALF 312 (521)
T ss_pred CcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEE
Confidence 123456666999988877652 1367889998754 4678876443 35677
Q ss_pred EcCCCeeeeeccCCCCcCCCeEEEcc
Q 041774 299 LNPSSTSMKLAVDDASELANTIHVEC 324 (382)
Q Consensus 299 lg~~~s~~~~~~~~~g~~~N~IYf~d 324 (382)
.|.-+-+--......|.=.|-.||.|
T Consensus 313 FGGV~D~eeeeEsl~g~F~NDLy~fd 338 (521)
T KOG1230|consen 313 FGGVCDLEEEEESLSGEFFNDLYFFD 338 (521)
T ss_pred ecceecccccchhhhhhhhhhhhhee
Confidence 77554332222223444567777774
No 31
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=89.32 E-value=0.8 Score=30.07 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=31.5
Q ss_pred EEEEeCCcEEEEEEe---CC-CceEEEEEEEcCCCCEEEcccCC
Q 041774 254 IESEHEGSLLSVYYD---SH-RLQWLVFRFDLIKENWVEVNRLD 293 (382)
Q Consensus 254 ~LVe~~G~LllV~~~---~~-~~~~~V~~ld~~~~~W~~v~~Lg 293 (382)
-.|..+++|+++.-+ .. ...-.|+.+|.++.+|.++..+|
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 356679999999877 11 23778999999999999998775
No 32
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=89.28 E-value=16 Score=35.57 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=71.8
Q ss_pred eEEEEEEecCCCceEEeecCCcc--cccceEEEE-CCEEEEEee------------CCeEEEEEcCCCCeEEeccCCCCC
Q 041774 180 RICISTCKPGERTWTRHFFDGFY--GDLHGLTYL-RGVLYCSFC------------NNVLGAFRVSTNSWKIYPHNRIRP 244 (382)
Q Consensus 180 ~~~i~~~r~gd~~W~~~~~~~~~--~~~~d~v~~-~G~~Y~l~~------------~g~l~~~d~~~~~~~~~~~p~~~~ 244 (382)
|..+.+|....++|+.+..+..| .....+|.+ .|.+|.... .-.++.||+..+.|..+..+- +|
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~P 175 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GP 175 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CC
Confidence 44577888899999998765532 233344444 366666531 125889999999999987642 22
Q ss_pred CcceeeceeEEEEeCCcEEEEEEeCC--C---ceEEEEEEEcCCCCEEEccc
Q 041774 245 TSVYLYYGLIESEHEGSLLSVYYDSH--R---LQWLVFRFDLIKENWVEVNR 291 (382)
Q Consensus 245 ~~~~~~~~~~LVe~~G~LllV~~~~~--~---~~~~V~~ld~~~~~W~~v~~ 291 (382)
.. ....-+|...-.|+|...... + .-=.||.+|.++.+|.|++-
T Consensus 176 S~---RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 176 SP---RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred CC---CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 21 134467888888888876542 1 13467777888899999987
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=88.27 E-value=1.9 Score=27.66 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=33.0
Q ss_pred eEEEEeCCcEEEEEEeCC--CceEEEEEEEcCCCCEEEcccC
Q 041774 253 LIESEHEGSLLSVYYDSH--RLQWLVFRFDLIKENWVEVNRL 292 (382)
Q Consensus 253 ~~LVe~~G~LllV~~~~~--~~~~~V~~ld~~~~~W~~v~~L 292 (382)
.-.+..+|+|+++.-... ...-.|+++|.++.+|+++.+|
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 346778999999988765 2378899999999999999876
No 34
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=86.97 E-value=9.1 Score=38.60 Aligned_cols=107 Identities=19% Similarity=0.115 Sum_probs=70.1
Q ss_pred EEEEEecCCCceEEeecCC---cccccceEEEECCEEEEEe-------eCCeEEEEEcCCCCeEEeccCC--CCCCccee
Q 041774 182 CISTCKPGERTWTRHFFDG---FYGDLHGLTYLRGVLYCSF-------CNNVLGAFRVSTNSWKIYPHNR--IRPTSVYL 249 (382)
Q Consensus 182 ~i~~~r~gd~~W~~~~~~~---~~~~~~d~v~~~G~~Y~l~-------~~g~l~~~d~~~~~~~~~~~p~--~~~~~~~~ 249 (382)
.+..++..+..|+.+.... .+.....++.++-++|+.. ....++++|+...+|+.+.... ..|.
T Consensus 140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR---- 215 (482)
T KOG0379|consen 140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPR---- 215 (482)
T ss_pred heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCC----
Confidence 5778899999999875322 1233445566677788764 2347999999999999875431 1121
Q ss_pred eceeEEEEeCCcEEEEEEeC-CC-ceEEEEEEEcCCCCEEEcccCC
Q 041774 250 YYGLIESEHEGSLLSVYYDS-HR-LQWLVFRFDLIKENWVEVNRLD 293 (382)
Q Consensus 250 ~~~~~LVe~~G~LllV~~~~-~~-~~~~V~~ld~~~~~W~~v~~Lg 293 (382)
...-++.-++.++++.-.. .+ ..=.||.||..+.+|.++...|
T Consensus 216 -~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 216 -YGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred -CCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccC
Confidence 2334566677777776554 32 2567889998889998765433
No 35
>PF13964 Kelch_6: Kelch motif
Probab=86.14 E-value=2.3 Score=27.86 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=27.3
Q ss_pred ceEEEECCEEEEEee-------CCeEEEEEcCCCCeEEecc
Q 041774 206 HGLTYLRGVLYCSFC-------NNVLGAFRVSTNSWKIYPH 239 (382)
Q Consensus 206 ~d~v~~~G~~Y~l~~-------~g~l~~~d~~~~~~~~~~~ 239 (382)
..++..+|++|++.. ...+..||+..++|+.++.
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP 45 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC
Confidence 356889999999862 2468999999999999863
No 36
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=85.67 E-value=5.7 Score=36.21 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=62.7
Q ss_pred EEecCCCceEEeecCCccc---ccceEEEECCEEEEEee---------------CCeEEEEEcCCCCeEEeccCCCCCCc
Q 041774 185 TCKPGERTWTRHFFDGFYG---DLHGLTYLRGVLYCSFC---------------NNVLGAFRVSTNSWKIYPHNRIRPTS 246 (382)
Q Consensus 185 ~~r~gd~~W~~~~~~~~~~---~~~d~v~~~G~~Y~l~~---------------~g~l~~~d~~~~~~~~~~~p~~~~~~ 246 (382)
...-.+..|+.+.....+. ++...+..+|..|+... ...|.++|+..+.|..-+..+..|++
T Consensus 161 ~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~G 240 (392)
T KOG4693|consen 161 VLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGG 240 (392)
T ss_pred eEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCc
Confidence 3444567888875433221 23233445677777641 23689999999888765433333332
Q ss_pred ceeeceeEEEEeCCcEEEEEEeCCCc---eEEEEEEEcCCCCEEEcc
Q 041774 247 VYLYYGLIESEHEGSLLSVYYDSHRL---QWLVFRFDLIKENWVEVN 290 (382)
Q Consensus 247 ~~~~~~~~LVe~~G~LllV~~~~~~~---~~~V~~ld~~~~~W~~v~ 290 (382)
.........+|+++|...+.... -=++|.+|..+.-|.+++
T Consensus 241 ---RRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 241 ---RRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred ---ccccceEEEcceEEEecccchhhhhhhcceeecccccchheeee
Confidence 12223456789999998776421 346788888888888764
No 37
>PF13964 Kelch_6: Kelch motif
Probab=84.97 E-value=1.9 Score=28.25 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=32.0
Q ss_pred EEEEeCCcEEEEEEeCC--CceEEEEEEEcCCCCEEEcccCC
Q 041774 254 IESEHEGSLLSVYYDSH--RLQWLVFRFDLIKENWVEVNRLD 293 (382)
Q Consensus 254 ~LVe~~G~LllV~~~~~--~~~~~V~~ld~~~~~W~~v~~Lg 293 (382)
-+|..+|+|+++.-... ...-.|+++|.++.+|+++.+|.
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 46778999999987654 23678889999999999998875
No 38
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=83.85 E-value=0.59 Score=43.92 Aligned_cols=40 Identities=18% Similarity=0.549 Sum_probs=34.0
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCc-------hhhhhhhccCcchhccccC
Q 041774 17 KSWSNLPPDIVNLIAENLYYYADY-------ADQVRFRTICKSWQSTCVP 59 (382)
Q Consensus 17 ~~Ws~LP~dlL~~Il~rL~~~~~~-------~d~~rfr~VCk~Wrs~~~~ 59 (382)
..|++||+++|..|+.|. +.. ++.+....||+.||..+..
T Consensus 43 ~~~~~l~~~~L~d~~~r~---eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRD---EESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhc---cccccccccccccccccchhhhhhhhccc
Confidence 589999999999999999 333 3578999999999998664
No 39
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=83.39 E-value=0.6 Score=43.40 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHhcC-CCCchhhhhhhccCcchhcccc
Q 041774 20 SNLPPDIVNLIAENLYY-YADYADQVRFRTICKSWQSTCV 58 (382)
Q Consensus 20 s~LP~dlL~~Il~rL~~-~~~~~d~~rfr~VCk~Wrs~~~ 58 (382)
+.||+|+|..|+++..- .-++.++.+..+|||.|+-++.
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 57999999999987520 1257999999999999998865
No 40
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=82.49 E-value=45 Score=31.94 Aligned_cols=119 Identities=12% Similarity=0.146 Sum_probs=66.7
Q ss_pred eEEEcCCceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCceeeCCCCcccCcceEEEcCCCCCCCeEEEEEEEe--e
Q 041774 99 KIKASKDGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVY--Y 176 (382)
Q Consensus 99 ~~~gs~~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~i~LP~~~~~~~~~v~~s~~p~s~~~~v~~i~~~--~ 176 (382)
.|.+-.+.+++.++.. ...+|+|+-|.+...+|.+......-+.++- .+. +.++... .
T Consensus 70 ~F~al~gskIv~~d~~---------------~~t~vyDt~t~av~~~P~l~~pk~~pisv~V----G~~-LY~m~~~~~~ 129 (342)
T PF07893_consen 70 DFFALHGSKIVAVDQS---------------GRTLVYDTDTRAVATGPRLHSPKRCPISVSV----GDK-LYAMDRSPFP 129 (342)
T ss_pred EEEEecCCeEEEEcCC---------------CCeEEEECCCCeEeccCCCCCCCcceEEEEe----CCe-EEEeeccCcc
Confidence 3444457888888765 5688999999999999987643222222211 111 3333320 0
Q ss_pred -CCC-----eEEEEEEec------CCCceEEeecCC--ccc-c------cceEEEECCEEEEEeeCC---eEEEEEcCCC
Q 041774 177 -STR-----RICISTCKP------GERTWTRHFFDG--FYG-D------LHGLTYLRGVLYCSFCNN---VLGAFRVSTN 232 (382)
Q Consensus 177 -~~~-----~~~i~~~r~------gd~~W~~~~~~~--~~~-~------~~d~v~~~G~~Y~l~~~g---~l~~~d~~~~ 232 (382)
... .+++..|++ ....|.+...|. +.. . +..-+.++|.-.+++..+ ..++||....
T Consensus 130 ~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~ 209 (342)
T PF07893_consen 130 EPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESH 209 (342)
T ss_pred ccccCccceeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCc
Confidence 000 234444542 345565544333 211 1 333333488777776554 4999999988
Q ss_pred CeEEe
Q 041774 233 SWKIY 237 (382)
Q Consensus 233 ~~~~~ 237 (382)
+|+..
T Consensus 210 ~W~~~ 214 (342)
T PF07893_consen 210 EWRKH 214 (342)
T ss_pred ceeec
Confidence 89865
No 41
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=80.48 E-value=19 Score=36.25 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=64.4
Q ss_pred EEEEEecCCCceEEeecCC-cc--cccceEEEECCEEEEEeeCC-------eEEEEEcCCCCeEEeccCCCCCCcceeec
Q 041774 182 CISTCKPGERTWTRHFFDG-FY--GDLHGLTYLRGVLYCSFCNN-------VLGAFRVSTNSWKIYPHNRIRPTSVYLYY 251 (382)
Q Consensus 182 ~i~~~r~gd~~W~~~~~~~-~~--~~~~d~v~~~G~~Y~l~~~g-------~l~~~d~~~~~~~~~~~p~~~~~~~~~~~ 251 (382)
.+.+++.....|+...... .+ .....++..+.++|.+.... .|+.||+.+.+|..+......|. ..
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~----~r 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPP----PR 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCC----Cc
Confidence 3667777777888653211 11 22334556677777775332 79999999999987742111111 02
Q ss_pred eeEEEEeCCcEEEEEEeC-CC--ceEEEEEEEcCCCCEEEcccCC
Q 041774 252 GLIESEHEGSLLSVYYDS-HR--LQWLVFRFDLIKENWVEVNRLD 293 (382)
Q Consensus 252 ~~~LVe~~G~LllV~~~~-~~--~~~~V~~ld~~~~~W~~v~~Lg 293 (382)
..+-+...|+.++|..-. .. ....+|.+|.+..+|.++...|
T Consensus 165 ~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g 209 (482)
T KOG0379|consen 165 AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQG 209 (482)
T ss_pred ccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCC
Confidence 223333334555554432 22 3688999999999999987665
No 42
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.98 E-value=5.8 Score=23.13 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEECCEEEEEeeCCeEEEEEcCCC
Q 041774 208 LTYLRGVLYCSFCNNVLGAFRVSTN 232 (382)
Q Consensus 208 ~v~~~G~~Y~l~~~g~l~~~d~~~~ 232 (382)
++..+|.+|+-+..|.|+++|....
T Consensus 2 ~~~~~~~v~~~~~~g~l~a~d~~~G 26 (33)
T smart00564 2 VVLSDGTVYVGSTDGTLYALDAKTG 26 (33)
T ss_pred cEEECCEEEEEcCCCEEEEEEcccC
Confidence 3567889999988999999998654
No 43
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=79.95 E-value=5.5 Score=36.32 Aligned_cols=83 Identities=16% Similarity=0.114 Sum_probs=48.5
Q ss_pred EEEECCEEEEEee-------CCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCC---ceEEEE
Q 041774 208 LTYLRGVLYCSFC-------NNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHR---LQWLVF 277 (382)
Q Consensus 208 ~v~~~G~~Y~l~~-------~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~---~~~~V~ 277 (382)
+|..+++.|+... ...++.||+....|+.....-.-|.. ......+..+..+++...+..+ .+-+++
T Consensus 84 vV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPga---RDGHsAcV~gn~MyiFGGye~~a~~FS~d~h 160 (392)
T KOG4693|consen 84 VVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGA---RDGHSACVWGNQMYIFGGYEEDAQRFSQDTH 160 (392)
T ss_pred EEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCc---cCCceeeEECcEEEEecChHHHHHhhhccce
Confidence 4556666666541 13588899998888754321000100 0122234445566666555432 367899
Q ss_pred EEEcCCCCEEEcccCC
Q 041774 278 RFDLIKENWVEVNRLD 293 (382)
Q Consensus 278 ~ld~~~~~W~~v~~Lg 293 (382)
+||..++.|.+|..-|
T Consensus 161 ~ld~~TmtWr~~~Tkg 176 (392)
T KOG4693|consen 161 VLDFATMTWREMHTKG 176 (392)
T ss_pred eEeccceeeeehhccC
Confidence 9999999999986543
No 44
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=77.44 E-value=68 Score=30.58 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=50.3
Q ss_pred cceEEEE-CCEEEEEee--CCeEEEEEcCC--CCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCceEEEEEE
Q 041774 205 LHGLTYL-RGVLYCSFC--NNVLGAFRVST--NSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRF 279 (382)
Q Consensus 205 ~~d~v~~-~G~~Y~l~~--~g~l~~~d~~~--~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~~~~V~~l 279 (382)
-.++++. +|++.+++. .+.|.+|+++. ...+.+..-+.... .-+...+..+|+.++|.-..+. .+.||++
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~----~Pr~~~~s~~g~~l~Va~~~s~-~v~vf~~ 321 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK----FPRHFAFSPDGRYLYVANQDSN-TVSVFDI 321 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS----SEEEEEE-TTSSEEEEEETTTT-EEEEEEE
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC----CccEEEEeCCCCEEEEEecCCC-eEEEEEE
Confidence 3456655 787544443 34799999853 35555532221111 0133445678999998776665 7999999
Q ss_pred EcCCCCEEEcc
Q 041774 280 DLIKENWVEVN 290 (382)
Q Consensus 280 d~~~~~W~~v~ 290 (382)
|.+.+++..+.
T Consensus 322 d~~tG~l~~~~ 332 (345)
T PF10282_consen 322 DPDTGKLTPVG 332 (345)
T ss_dssp ETTTTEEEEEE
T ss_pred eCCCCcEEEec
Confidence 99888887764
No 45
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=76.01 E-value=8.2 Score=24.59 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=26.1
Q ss_pred ceEEEECCEEEEEeeC-------CeEEEEEcCCCCeEEec
Q 041774 206 HGLTYLRGVLYCSFCN-------NVLGAFRVSTNSWKIYP 238 (382)
Q Consensus 206 ~d~v~~~G~~Y~l~~~-------g~l~~~d~~~~~~~~~~ 238 (382)
..++.++|++|++... ..+..||+..++|+.++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 4567899999999621 25889999999998875
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=73.46 E-value=1.7 Score=40.92 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=31.1
Q ss_pred CCC----HHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774 21 NLP----PDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV 58 (382)
Q Consensus 21 ~LP----~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~ 58 (382)
.|| +++.+.|+..| +..|+.....|||.|+.++.
T Consensus 77 ~lP~~gl~hi~e~ilsyl----d~~sLc~celv~k~W~r~l~ 114 (499)
T KOG0281|consen 77 ALPEQGLDHIAENILSYL----DALSLCACELVCKEWKRVLS 114 (499)
T ss_pred hcccccHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHhc
Confidence 588 88999999999 99999999999999998865
No 47
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=70.28 E-value=1e+02 Score=29.38 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=48.9
Q ss_pred EECCEEEEEeeCC--eEEEEEcCC--CCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCceEEEEEEEcCCCC
Q 041774 210 YLRGVLYCSFCNN--VLGAFRVST--NSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIKEN 285 (382)
Q Consensus 210 ~~~G~~Y~l~~~g--~l~~~d~~~--~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~~~~V~~ld~~~~~ 285 (382)
..+|+|......| .|.+|.++. .....+..-+... ..-+.+-...+|.+|+|....+. .+.||+.|.++++
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg----~~PR~F~i~~~g~~Liaa~q~sd-~i~vf~~d~~TG~ 326 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG----QFPRDFNINPSGRFLIAANQKSD-NITVFERDKETGR 326 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC----cCCccceeCCCCCEEEEEccCCC-cEEEEEEcCCCce
Confidence 4699987776554 577776554 3333332211110 01234567789999999888777 7999999999887
Q ss_pred EEEcc
Q 041774 286 WVEVN 290 (382)
Q Consensus 286 W~~v~ 290 (382)
..+..
T Consensus 327 L~~~~ 331 (346)
T COG2706 327 LTLLG 331 (346)
T ss_pred EEecc
Confidence 76653
No 48
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=69.70 E-value=1.1e+02 Score=29.61 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=30.4
Q ss_pred cCCCceEEeecCCcccccceEEEECCEEEEEeeCCeEEEEEcCCC
Q 041774 188 PGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTN 232 (382)
Q Consensus 188 ~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~g~l~~~d~~~~ 232 (382)
.|...|+.-.... .....++..+|++|+.+.+|.|+++|..+.
T Consensus 313 tG~~~W~~~~~~~--~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 313 GGVELWSQSDLLH--RLLTAPVLYNGYLVVGDSEGYLHWINREDG 355 (394)
T ss_pred CCcEEEcccccCC--CcccCCEEECCEEEEEeCCCEEEEEECCCC
Confidence 4556787532111 234556778999999999999999998765
No 49
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=66.51 E-value=16 Score=23.67 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=24.3
Q ss_pred eEEEECCEEEEEeeC---------CeEEEEEcCCCCeEEec
Q 041774 207 GLTYLRGVLYCSFCN---------NVLGAFRVSTNSWKIYP 238 (382)
Q Consensus 207 d~v~~~G~~Y~l~~~---------g~l~~~d~~~~~~~~~~ 238 (382)
.++..+|++|++.-. ..+.+||+...+|+.++
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 356778888887532 36889999999998775
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=65.34 E-value=3.6 Score=39.96 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=32.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774 17 KSWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV 58 (382)
Q Consensus 17 ~~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~ 58 (382)
..|+ ||+|++-.|+.-| +.+.+.|.+.+|+.|.-.+.
T Consensus 71 ~~~~-LPpEl~lkvFS~L----Dtksl~r~a~~c~~~n~~Al 107 (483)
T KOG4341|consen 71 ISRS-LPPELLLKVFSML----DTKSLCRAAQCCTMWNKLAL 107 (483)
T ss_pred cccc-CCHHHHHHHHHHH----hHHHHHHHHHHHHHhhhhhh
Confidence 3454 9999999999999 99999999999999987754
No 51
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=64.71 E-value=1.4e+02 Score=28.91 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.0
Q ss_pred ceEEEECCEEEEEeeCCeEEEEEcCCC
Q 041774 206 HGLTYLRGVLYCSFCNNVLGAFRVSTN 232 (382)
Q Consensus 206 ~d~v~~~G~~Y~l~~~g~l~~~d~~~~ 232 (382)
..++..+|.+|+.+..|.++++|+...
T Consensus 250 ~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 250 TTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 456778999999999999999999764
No 52
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=62.92 E-value=25 Score=22.55 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=17.3
Q ss_pred CCEEEEEe-------eCCeEEEEEcCCCCeEEecc
Q 041774 212 RGVLYCSF-------CNNVLGAFRVSTNSWKIYPH 239 (382)
Q Consensus 212 ~G~~Y~l~-------~~g~l~~~d~~~~~~~~~~~ 239 (382)
++++|+.. ....+..||+..++|+.++.
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTEEEE--S
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCC
Confidence 46666653 22478999999999998843
No 53
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=58.40 E-value=1.7e+02 Score=27.91 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=30.0
Q ss_pred ecCCCceEEeecCCcccccceEEEECCEEEEEeeCCeEEEEEcCCC
Q 041774 187 KPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTN 232 (382)
Q Consensus 187 r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~g~l~~~d~~~~ 232 (382)
+.|+..|+.- .. ....++..+|.+|+.+.+|.|+++|....
T Consensus 259 ~tG~~~W~~~-~~----~~~~p~~~~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 259 RSGRVLWKRD-AS----SYQGPAVDDNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred CCCcEEEeec-cC----CccCceEeCCEEEEECCCCeEEEEECCCC
Confidence 3566778753 11 23456678999999999999999999764
No 54
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.02 E-value=1e+02 Score=28.95 Aligned_cols=105 Identities=14% Similarity=0.275 Sum_probs=57.9
Q ss_pred CceEEeec-CCcccccceEEE---ECC-EEEEEeeCCeEEEEEcCC----CCeEE------eccCCCCCCcceeeceeEE
Q 041774 191 RTWTRHFF-DGFYGDLHGLTY---LRG-VLYCSFCNNVLGAFRVST----NSWKI------YPHNRIRPTSVYLYYGLIE 255 (382)
Q Consensus 191 ~~W~~~~~-~~~~~~~~d~v~---~~G-~~Y~l~~~g~l~~~d~~~----~~~~~------~~~p~~~~~~~~~~~~~~L 255 (382)
..|..... -+......|+-| +.| ++-+...+|.|-.|+... ..|.+ +..||-........-....
T Consensus 100 ~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~ 179 (361)
T KOG2445|consen 100 RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNP 179 (361)
T ss_pred ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecc
Confidence 46776531 111234566554 566 455566788888887643 23442 3333211110000001112
Q ss_pred EEeCCcEEEEEEeCC---CceEEEEEEEcCCCCEEEcccCCCc
Q 041774 256 SEHEGSLLSVYYDSH---RLQWLVFRFDLIKENWVEVNRLDDR 295 (382)
Q Consensus 256 Ve~~G~LllV~~~~~---~~~~~V~~ld~~~~~W~~v~~Lg~~ 295 (382)
-.-...++.|..... ..+..+|+.++..++|.++.+|.|.
T Consensus 180 sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~ 222 (361)
T KOG2445|consen 180 SRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH 222 (361)
T ss_pred ccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence 233456666666542 1279999999999999999988764
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=56.25 E-value=3.5 Score=42.09 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCchhhhhhhccCcchhcccc
Q 041774 18 SWSNLPPDIVNLIAENLYYYADYADQVRFRTICKSWQSTCV 58 (382)
Q Consensus 18 ~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk~Wrs~~~ 58 (382)
--+.||.++...|+..| +..++++.++||+.|+....
T Consensus 107 fi~~lp~el~~~il~~L----d~~~l~~~~~v~~~w~~~~~ 143 (537)
T KOG0274|consen 107 FLSLLPSELSLHILSFL----DGRDLLAVRQVCRNWNKLLD 143 (537)
T ss_pred hhhcccchhcccccccC----CHHHhhhhhhhcchhhhhhh
Confidence 34689999999999999 88999999999999999876
No 56
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=55.36 E-value=1.8e+02 Score=27.18 Aligned_cols=107 Identities=15% Similarity=0.092 Sum_probs=57.2
Q ss_pred ceEEEEcCCCCce---eeCCCCccc-CcceEEEcCCCC-CCCeEEEEEEEeeCC---Ce-EEEEEEecCCC-----ceEE
Q 041774 130 SSLFFYNPFSASI---IELPPLHMF-SSDKATFSTAPT-SLFCTVFVLSVYYST---RR-ICISTCKPGER-----TWTR 195 (382)
Q Consensus 130 ~~~~l~NP~T~~~---i~LP~~~~~-~~~~v~~s~~p~-s~~~~v~~i~~~~~~---~~-~~i~~~r~gd~-----~W~~ 195 (382)
..+.|+||.|.+. ++|++-+.. ....+.|..+.+ ...+.|++....... .. ..+.+++..+. +.+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3678899998874 445553321 112334433222 145666654431110 11 45677776664 4444
Q ss_pred eecCCcccccceEEEECCEEEEEeeCCeEEEEEcCCCC-eEEe
Q 041774 196 HFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNS-WKIY 237 (382)
Q Consensus 196 ~~~~~~~~~~~d~v~~~G~~Y~l~~~g~l~~~d~~~~~-~~~~ 237 (382)
+...........+..++|+ +++...+.|.++++.... +...
T Consensus 82 i~~~~~~g~V~ai~~~~~~-lv~~~g~~l~v~~l~~~~~l~~~ 123 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGR-LVVAVGNKLYVYDLDNSKTLLKK 123 (321)
T ss_dssp EEEEEESS-EEEEEEETTE-EEEEETTEEEEEEEETTSSEEEE
T ss_pred EEEEeecCcceEhhhhCCE-EEEeecCEEEEEEccCcccchhh
Confidence 4222223345667778898 666667889999998766 4433
No 57
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=52.56 E-value=2.2e+02 Score=27.29 Aligned_cols=90 Identities=18% Similarity=0.090 Sum_probs=46.1
Q ss_pred cceEEEE--CCEEEEEeeCCeEEEEEcCCCCeEEecc------CCCCCCcceeeceeEEEE-eCCcEEEEEEeCC----C
Q 041774 205 LHGLTYL--RGVLYCSFCNNVLGAFRVSTNSWKIYPH------NRIRPTSVYLYYGLIESE-HEGSLLSVYYDSH----R 271 (382)
Q Consensus 205 ~~d~v~~--~G~~Y~l~~~g~l~~~d~~~~~~~~~~~------p~~~~~~~~~~~~~~LVe-~~G~LllV~~~~~----~ 271 (382)
+.+.++. +|.+|+++..|.|+..|++++..+.... ..+..++-.-..+-.-+. -.|+|++.-.... +
T Consensus 186 f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 186 FEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp -S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred ccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 3445554 3689999999999999999875433220 000001000001112222 2466664332221 1
Q ss_pred -ceEEEEEEEcCCCCEEEcccCCC
Q 041774 272 -LQWLVFRFDLIKENWVEVNRLDD 294 (382)
Q Consensus 272 -~~~~V~~ld~~~~~W~~v~~Lg~ 294 (382)
..-+||.+|.++++=+..-.|+.
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l~~ 289 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPLEH 289 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEEEE
T ss_pred CCceEEEEEECCCCeEEEEEeCCC
Confidence 27899999998876544444443
No 58
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=51.26 E-value=9.8 Score=29.02 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCchhhhh
Q 041774 17 KSWSNLPPDIVNLIAENLYYYADYADQVR 45 (382)
Q Consensus 17 ~~Ws~LP~dlL~~Il~rL~~~~~~~d~~r 45 (382)
..|..||.|+-..|+..| +..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L----~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYL----SNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcC----CHHHHHH
Confidence 679999999999999999 8888754
No 59
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=50.55 E-value=56 Score=30.83 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=37.7
Q ss_pred cceEEEECCEEEEEe-eCCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeC
Q 041774 205 LHGLTYLRGVLYCSF-CNNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDS 269 (382)
Q Consensus 205 ~~d~v~~~G~~Y~l~-~~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~ 269 (382)
-..+-.|+|++|+++ ..|.+..+|++...++.+..-|-.+. .-.++ |.+++|....
T Consensus 205 PhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r-----GL~f~----G~llvVgmSk 261 (335)
T TIGR03032 205 PHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR-----GLAFA----GDFAFVGLSK 261 (335)
T ss_pred CcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc-----cccee----CCEEEEEecc
Confidence 345677999999998 57899999998666776643221111 11122 8999998754
No 60
>PRK04792 tolB translocation protein TolB; Provisional
Probab=49.79 E-value=2.7e+02 Score=27.61 Aligned_cols=145 Identities=10% Similarity=0.026 Sum_probs=73.9
Q ss_pred CceEEEEcCCCCceeeCCCCcccCcceEEEcCCCCCCCeEEEEEEEeeCCCeEEEEEEecCCCceEEeecCCcccccceE
Q 041774 129 PSSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGL 208 (382)
Q Consensus 129 ~~~~~l~NP~T~~~i~LP~~~~~~~~~v~~s~~p~s~~~~v~~i~~~~~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~ 208 (382)
...+++.|+-|++...+...+.. .....+| |.+. ..++. .. ..+ ...|..+.......+.+.... .....+
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~-~~~~~wS--PDG~-~La~~-~~-~~g-~~~Iy~~dl~tg~~~~lt~~~--~~~~~p 311 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI-NGAPRFS--PDGK-KLALV-LS-KDG-QPEIYVVDIATKALTRITRHR--AIDTEP 311 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC-cCCeeEC--CCCC-EEEEE-Ee-CCC-CeEEEEEECCCCCeEECccCC--CCccce
Confidence 45788999988887666543211 1223444 3222 22222 22 223 256777777666666653211 122334
Q ss_pred EE-ECCE-EEEEee-C--CeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCceEEEEEEEcCC
Q 041774 209 TY-LRGV-LYCSFC-N--NVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLIK 283 (382)
Q Consensus 209 v~-~~G~-~Y~l~~-~--g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~~~~V~~ld~~~ 283 (382)
.+ -+|+ +++... . ..|+.+|+.+.+++.+.... .. ...--...+|+.+++...... .+.||.+|..+
T Consensus 312 ~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~-----~~~~~~SpDG~~l~~~~~~~g-~~~I~~~dl~~ 383 (448)
T PRK04792 312 SWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQ-----NLGGSITPDGRSMIMVNRTNG-KFNIARQDLET 383 (448)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--CC-----CcCeeECCCCCEEEEEEecCC-ceEEEEEECCC
Confidence 43 3665 433332 2 36888888776666553210 00 001112346665554433333 57899999877
Q ss_pred CCEEEcc
Q 041774 284 ENWVEVN 290 (382)
Q Consensus 284 ~~W~~v~ 290 (382)
++...+.
T Consensus 384 g~~~~lt 390 (448)
T PRK04792 384 GAMQVLT 390 (448)
T ss_pred CCeEEcc
Confidence 7666554
No 61
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=49.04 E-value=28 Score=22.45 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=22.0
Q ss_pred CcEEEEEEeC---CCceEEEEEEEcCCCCEEEcccCC
Q 041774 260 GSLLSVYYDS---HRLQWLVFRFDLIKENWVEVNRLD 293 (382)
Q Consensus 260 G~LllV~~~~---~~~~~~V~~ld~~~~~W~~v~~Lg 293 (382)
++|++..-.. ....=++|++|.++.+|+++.++.
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P 38 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLP 38 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCC
Confidence 3445544433 122557888999999999996554
No 62
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=45.53 E-value=3.1e+02 Score=27.05 Aligned_cols=24 Identities=8% Similarity=0.243 Sum_probs=17.6
Q ss_pred cCCCceEEEEcCCCCceeeCCCCc
Q 041774 126 NSSPSSLFFYNPFSASIIELPPLH 149 (382)
Q Consensus 126 ~~~~~~~~l~NP~T~~~i~LP~~~ 149 (382)
.....+++++|..|++.+.+-.+.
T Consensus 249 ~E~~~RylVfN~~t~~V~R~Daig 272 (448)
T PF12458_consen 249 REEEWRYLVFNTRTKKVVRLDAIG 272 (448)
T ss_pred CCcceeEEEEecccceEEEecchh
Confidence 334568899999999887776543
No 63
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=44.94 E-value=44 Score=20.33 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=13.8
Q ss_pred CEEEEEeeCCeEEEEEcCCC
Q 041774 213 GVLYCSFCNNVLGAFRVSTN 232 (382)
Q Consensus 213 G~~Y~l~~~g~l~~~d~~~~ 232 (382)
|++|+-+..|.|+++|..+.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG 20 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTG 20 (38)
T ss_dssp TEEEEETTTSEEEEEETTTT
T ss_pred CEEEEeCCCCEEEEEECCCC
Confidence 46666667777777777654
No 64
>PF13013 F-box-like_2: F-box-like domain
Probab=44.79 E-value=12 Score=29.43 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCCchhhhhhhccCc
Q 041774 19 WSNLPPDIVNLIAENLYYYADYADQVRFRTICK 51 (382)
Q Consensus 19 Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VCk 51 (382)
-.|||.||++.|...- .-.+++..-..|+
T Consensus 22 l~DLP~ELl~~I~~~C----~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYC----NDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhc----CcHHHHHHHHHHH
Confidence 4689999999999999 7777766666665
No 65
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=42.56 E-value=3.5e+02 Score=26.76 Aligned_cols=82 Identities=11% Similarity=0.293 Sum_probs=48.8
Q ss_pred ccceEEEE-CCEEEEEe-eCCeEEEEEcCC-CCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCceEEEEEEE
Q 041774 204 DLHGLTYL-RGVLYCSF-CNNVLGAFRVST-NSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFD 280 (382)
Q Consensus 204 ~~~d~v~~-~G~~Y~l~-~~g~l~~~d~~~-~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~~~~V~~ld 280 (382)
.+..+.|- ||-..+.+ .++.+.-||+.. ..++.+..+...+ ...+-.+-.|..+.+. +. .+.||..+
T Consensus 391 ~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~------v~s~~fD~SGt~L~~~---g~-~l~Vy~~~ 460 (506)
T KOG0289|consen 391 PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKE------VNSLSFDQSGTYLGIA---GS-DLQVYICK 460 (506)
T ss_pred ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccc------ceeEEEcCCCCeEEee---cc-eeEEEEEe
Confidence 34445553 55444444 556799999964 3455444322110 1233344456655554 22 79999999
Q ss_pred cCCCCEEEcccCCCc
Q 041774 281 LIKENWVEVNRLDDR 295 (382)
Q Consensus 281 ~~~~~W~~v~~Lg~~ 295 (382)
..+..|.++..+.+.
T Consensus 461 k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 461 KKTKSWTEIKELADH 475 (506)
T ss_pred cccccceeeehhhhc
Confidence 999999999876654
No 66
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=41.44 E-value=1.4e+02 Score=28.23 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=37.3
Q ss_pred EEEEEcC-CCCeEEeccCCCCCCcceeeceeEEEEe-CCcEEEEEEeCCCceEEEEEEEcCCCCEEE-cccCC
Q 041774 224 LGAFRVS-TNSWKIYPHNRIRPTSVYLYYGLIESEH-EGSLLSVYYDSHRLQWLVFRFDLIKENWVE-VNRLD 293 (382)
Q Consensus 224 l~~~d~~-~~~~~~~~~p~~~~~~~~~~~~~~LVe~-~G~LllV~~~~~~~~~~V~~ld~~~~~W~~-v~~Lg 293 (382)
++.+.-+ +.+|+.-..-+ +.. +....+||. +|+|+|+..+... .-+||+=......|.+ +..|.
T Consensus 151 lIiYS~d~g~~W~lskg~s--~~g---C~~psv~EWe~gkLlM~~~c~~g-~rrVYeS~DmG~tWtea~gtls 217 (310)
T PF13859_consen 151 LIIYSTDDGKTWKLSKGMS--PAG---CSDPSVVEWEDGKLLMMTACDDG-RRRVYESGDMGTTWTEALGTLS 217 (310)
T ss_dssp EEEEESSTTSS-EE-S------TT----EEEEEEEE-TTEEEEEEE-TTS----EEEESSTTSS-EE-TTTTT
T ss_pred EEEEECCCccceEeccccC--CCC---cceEEEEeccCCeeEEEEecccc-eEEEEEEcccceehhhccCccc
Confidence 3344444 45787643211 111 246789999 8999999998765 5689999888889998 55665
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=40.94 E-value=2.6e+02 Score=24.79 Aligned_cols=73 Identities=14% Similarity=0.004 Sum_probs=0.0
Q ss_pred ceEEEE--CCEEEEEe-eCCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEEEEeCCCceEEEEEEEcC
Q 041774 206 HGLTYL--RGVLYCSF-CNNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFDLI 282 (382)
Q Consensus 206 ~d~v~~--~G~~Y~l~-~~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~~~~V~~ld~~ 282 (382)
+.+++. +|.||+.+ ..+.|+.+|+.......+..+. ..-..+...+..++|.... ...++ |..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---------~~G~~~~~~~g~l~v~~~~---~~~~~--d~~ 68 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---------PNGMAFDRPDGRLYVADSG---GIAVV--DPD 68 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---------EEEEEEECTTSEEEEEETT---CEEEE--ETT
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---------CceEEEEccCCEEEEEEcC---ceEEE--ecC
Q ss_pred CCCEEEcccC
Q 041774 283 KENWVEVNRL 292 (382)
Q Consensus 283 ~~~W~~v~~L 292 (382)
+++++.+.++
T Consensus 69 ~g~~~~~~~~ 78 (246)
T PF08450_consen 69 TGKVTVLADL 78 (246)
T ss_dssp TTEEEEEEEE
T ss_pred CCcEEEEeec
No 68
>PF00958 GMP_synt_C: GMP synthase C terminal domain domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations []. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains [].; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process; PDB: 2VXO_A 2YWC_D 2YWB_D 2DPL_B 3A4I_A 3UOW_B 3TQI_D 1GPM_C.
Probab=40.67 E-value=15 Score=27.94 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=18.4
Q ss_pred CccCCCCCCCCCHHHHHHHHHHh
Q 041774 12 KRSATKSWSNLPPDIVNLIAENL 34 (382)
Q Consensus 12 ~~~~~~~Ws~LP~dlL~~Il~rL 34 (382)
.+.+.++|+.||.|+|++|..|+
T Consensus 47 ~D~MTa~~~~~p~~~L~~is~~I 69 (93)
T PF00958_consen 47 EDFMTADWARLPWELLEEISSRI 69 (93)
T ss_dssp SSSSSEEE-TB-HHHHHHHHHHH
T ss_pred ccccccccccCCHHHHHHHHHHH
Confidence 45567899999999999999999
No 69
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=40.62 E-value=1.1e+02 Score=26.72 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred CceEEEEecCCCCCCceeeeccCCCceEEEEcCCCCce-----eeCCCCcccCcceEEEcCCCCCCCeEEEEEEEeeCCC
Q 041774 105 DGWVLFSKANINPSPFLFISYNSSPSSLFFYNPFSASI-----IELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTR 179 (382)
Q Consensus 105 ~GwL~~~~~~~~~~~~~~~~~~~~~~~~~l~NP~T~~~-----i~LP~~~~~~~~~v~~s~~p~s~~~~v~~i~~~~~~~ 179 (382)
++.+++.... +.++.+|+-||+. +.-|+..............+...+-.+++... .+.
T Consensus 122 ~~~~~~~~~~---------------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~g~ 184 (238)
T PF13360_consen 122 GDRLYVGTSS---------------GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSG--DGR 184 (238)
T ss_dssp TTEEEEEETC---------------SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECC--TSS
T ss_pred cCEEEEEecc---------------CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcC--CCe
Q ss_pred eEEEEEEecCCCceEEeecCCcccccceEEEECCEEEEEeeCCeEEEEEcCCCCeEE
Q 041774 180 RICISTCKPGERTWTRHFFDGFYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKI 236 (382)
Q Consensus 180 ~~~i~~~r~gd~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~g~l~~~d~~~~~~~~ 236 (382)
...+ -.+.|...| .. + .......+...+|.+|+.+..|.|+++|+.+.+...
T Consensus 185 ~~~~-d~~tg~~~w-~~--~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 185 VVAV-DLATGEKLW-SK--P-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEE-ETTTTEEEE-EE--C-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEEE-ECCCCCEEE-Ee--c-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
No 70
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=40.06 E-value=3.2e+02 Score=25.67 Aligned_cols=114 Identities=15% Similarity=0.220 Sum_probs=53.5
Q ss_pred EEEecCCCceEEeecCCcccccceEEEE-CCEEEEEeeCCeEEEEEc--CCCCeEEeccCCCCCCcceeeceeEEEE--e
Q 041774 184 STCKPGERTWTRHFFDGFYGDLHGLTYL-RGVLYCSFCNNVLGAFRV--STNSWKIYPHNRIRPTSVYLYYGLIESE--H 258 (382)
Q Consensus 184 ~~~r~gd~~W~~~~~~~~~~~~~d~v~~-~G~~Y~l~~~g~l~~~d~--~~~~~~~~~~p~~~~~~~~~~~~~~LVe--~ 258 (382)
..+.+|...|..+.-.. +..+..+.|- +|.++.+++.|.|..=|. +.++|..-..|..... ....-+. .
T Consensus 169 ~s~~~G~~~w~~~~r~~-~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~-----~~~ld~a~~~ 242 (302)
T PF14870_consen 169 SSWDPGQTTWQPHNRNS-SRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNG-----YGILDLAYRP 242 (302)
T ss_dssp EEE-TT-SS-EEEE--S-SS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS-------S-EEEEEESS
T ss_pred EEecCCCccceEEccCc-cceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCc-----eeeEEEEecC
Confidence 46778999999985432 2456777764 689999887777766552 2346665222211111 1111112 3
Q ss_pred CCcEEEEEEeCCCceEEEEEEEcCCCCEEEcccCC----C--cEEEEcCCCeeeee
Q 041774 259 EGSLLSVYYDSHRLQWLVFRFDLIKENWVEVNRLD----D--RALFLNPSSTSMKL 308 (382)
Q Consensus 259 ~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg----~--~alFlg~~~s~~~~ 308 (382)
.++++++.-.. .+++=......|++..... + ++.|+.....|.+-
T Consensus 243 ~~~~wa~gg~G-----~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 243 PNEIWAVGGSG-----TLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp SS-EEEEESTT------EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred CCCEEEEeCCc-----cEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence 45666554322 2344445667899975432 2 67888876666653
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=38.64 E-value=3.6e+02 Score=25.72 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=22.8
Q ss_pred ceEEEECCEEEEEeeCCeEEEEEcCCC
Q 041774 206 HGLTYLRGVLYCSFCNNVLGAFRVSTN 232 (382)
Q Consensus 206 ~d~v~~~G~~Y~l~~~g~l~~~d~~~~ 232 (382)
..+++.+|.+|+.+..|.+.++|+...
T Consensus 235 ~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred CccEEECCEEEEEEcCCEEEEEECCCC
Confidence 446778999999999999999999654
No 72
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=36.48 E-value=4.2e+02 Score=25.98 Aligned_cols=92 Identities=13% Similarity=0.152 Sum_probs=56.2
Q ss_pred cCCCceEEeecCC-----cccccceEEEECCEEEEEeeCCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeC-Cc
Q 041774 188 PGERTWTRHFFDG-----FYGDLHGLTYLRGVLYCSFCNNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHE-GS 261 (382)
Q Consensus 188 ~gd~~W~~~~~~~-----~~~~~~d~v~~~G~~Y~l~~~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~-G~ 261 (382)
-|..+|+....+. ....+.++.+.++..|++...|.|+.=+=.+++|+.++.++..++ ....+...+ +.
T Consensus 117 DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~-----~~~~i~~~~~~~ 191 (398)
T PLN00033 117 DGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKPAILLHTSDGGETWERIPLSPKLPG-----EPVLIKATGPKS 191 (398)
T ss_pred CCCCCceECccCcccccccccceeeeEEECCEEEEEcCceEEEEEcCCCCCceECccccCCCC-----CceEEEEECCCc
Confidence 4567999853321 112467777888889999888877765545679998865433232 122344443 44
Q ss_pred EEEEEEeCCCceEEEEEEEcCCCCEEEc
Q 041774 262 LLSVYYDSHRLQWLVFRFDLIKENWVEV 289 (382)
Q Consensus 262 LllV~~~~~~~~~~V~~ld~~~~~W~~v 289 (382)
.++|... =.||+-+.....|.++
T Consensus 192 ~~ivg~~-----G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 192 AEMVTDE-----GAIYVTSNAGRNWKAA 214 (398)
T ss_pred eEEEecc-----ceEEEECCCCCCceEc
Confidence 5565522 2377777777788876
No 73
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.86 E-value=1.6e+02 Score=26.21 Aligned_cols=80 Identities=9% Similarity=0.049 Sum_probs=44.4
Q ss_pred EEEECCEEEEEeeCCeEEEEEcCCCCeEE--eccCCCCCC------cceeeceeEEEEeCCcEEEEEEeCCCceEEEEEE
Q 041774 208 LTYLRGVLYCSFCNNVLGAFRVSTNSWKI--YPHNRIRPT------SVYLYYGLIESEHEGSLLSVYYDSHRLQWLVFRF 279 (382)
Q Consensus 208 ~v~~~G~~Y~l~~~g~l~~~d~~~~~~~~--~~~p~~~~~------~~~~~~~~~LVe~~G~LllV~~~~~~~~~~V~~l 279 (382)
+...+.-+.++|..|.+++||+...+... +...|+... .....-...-+...|..+++... + +.|..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g----~~y~y 92 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-G----DSYSY 92 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-C----CEEEe
Confidence 33455678889999999999998753211 111111100 00001123445577877655432 1 34666
Q ss_pred EcCCCCEEEcccC
Q 041774 280 DLIKENWVEVNRL 292 (382)
Q Consensus 280 d~~~~~W~~v~~L 292 (382)
+.+-+.|.+|.+=
T Consensus 93 ~~~L~~W~~vsd~ 105 (219)
T PF07569_consen 93 SPDLGCWIRVSDS 105 (219)
T ss_pred ccccceeEEeccc
Confidence 6667889998753
No 74
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=35.54 E-value=2.7e+02 Score=27.99 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=46.1
Q ss_pred ccceEEEECCEEEEEeeCCeEEEEEcCC-CCeEEeccCCCCCCcceeeceeEEEE-eCCcEEEEEEeCC---CceEEEEE
Q 041774 204 DLHGLTYLRGVLYCSFCNNVLGAFRVST-NSWKIYPHNRIRPTSVYLYYGLIESE-HEGSLLSVYYDSH---RLQWLVFR 278 (382)
Q Consensus 204 ~~~d~v~~~G~~Y~l~~~g~l~~~d~~~-~~~~~~~~p~~~~~~~~~~~~~~LVe-~~G~LllV~~~~~---~~~~~V~~ 278 (382)
.-.+++.++|++|++...|..+.+|+.+ ++......-..... .. .....-++ ..|+|+-+..... ...+.+|+
T Consensus 122 aNt~v~~~~g~llAl~E~g~p~~lDp~TLeT~g~~~~~~~l~~-~~-~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~ 199 (486)
T PF03055_consen 122 ANTNVIPHGGRLLALWEGGPPYELDPDTLETLGPFDFDGKLPG-QP-FTAHPKIDPETGELYNFGYSLGPEGSPKLTVYE 199 (486)
T ss_dssp --SEEEEETTEEEEE-TTSEEEEEETTTCEEEEEEEGGGTSST-S----S--EEETTTTTEEEEEEECSSTTSEEEEEEE
T ss_pred ceeeeEEECCEEEEEEcCCCCEEechhHhhhcCcccccccccC-cc-cccCceEcccCCcEEEEEEEeccCCCCcEEEEE
Confidence 3467889999999999999999999865 33322221110000 00 11223355 5899999988633 24799999
Q ss_pred EEcCC
Q 041774 279 FDLIK 283 (382)
Q Consensus 279 ld~~~ 283 (382)
+|.+.
T Consensus 200 ~~~~g 204 (486)
T PF03055_consen 200 IDPDG 204 (486)
T ss_dssp E-TTS
T ss_pred EcCcc
Confidence 99865
No 75
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=34.15 E-value=4.4e+02 Score=25.49 Aligned_cols=93 Identities=14% Similarity=-0.034 Sum_probs=47.9
Q ss_pred EEEEEEecCC-----CceEEeecCCcccccceEEEECCEEEEEee----CCeEEEEEcCCCC---eE-EeccCCCCCCcc
Q 041774 181 ICISTCKPGE-----RTWTRHFFDGFYGDLHGLTYLRGVLYCSFC----NNVLGAFRVSTNS---WK-IYPHNRIRPTSV 247 (382)
Q Consensus 181 ~~i~~~r~gd-----~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~----~g~l~~~d~~~~~---~~-~~~~p~~~~~~~ 247 (382)
..+.+....+ ..|+.+... .......+-..++.||+++. .++|+..++.... |. ++. +. ..+.
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~-~~~~- 327 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PE-DEDV- 327 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSE-
T ss_pred CeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CC-CCce-
Confidence 4455555444 377776422 11233445567889999984 4689999987643 55 332 21 1110
Q ss_pred eeeceeEEEEeCCcEEEEEEeCCCceEEEEEEE
Q 041774 248 YLYYGLIESEHEGSLLSVYYDSHRLQWLVFRFD 280 (382)
Q Consensus 248 ~~~~~~~LVe~~G~LllV~~~~~~~~~~V~~ld 280 (382)
.-.-+...++.|++..+......+.|+.++
T Consensus 328 ---~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 328 ---SLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp ---EEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ---eEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 011122346677766665543355555554
No 76
>smart00612 Kelch Kelch domain.
Probab=33.23 E-value=74 Score=19.49 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=17.4
Q ss_pred eEEEEEEEcCCCCEEEcccCC
Q 041774 273 QWLVFRFDLIKENWVEVNRLD 293 (382)
Q Consensus 273 ~~~V~~ld~~~~~W~~v~~Lg 293 (382)
.-.|+.+|..+.+|.++.+|.
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eeeEEEECCCCCeEccCCCCC
Confidence 456788898999999998875
No 77
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=33.04 E-value=30 Score=31.70 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=26.3
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCchhhhhhhccC
Q 041774 17 KSWSNLPPDIVNLIAENLYYYADYADQVRFRTIC 50 (382)
Q Consensus 17 ~~Ws~LP~dlL~~Il~rL~~~~~~~d~~rfr~VC 50 (382)
....|||.+++.+|+.|| ++-.|++..+-|=
T Consensus 200 ltl~dLP~e~vl~Il~rl---sDh~dL~s~aqa~ 230 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRL---SDHRDLESLAQAW 230 (332)
T ss_pred CCcccchHHHHHHHHHHc---cCcchHHHHHHhh
Confidence 356799999999999999 6779998887663
No 78
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=32.60 E-value=3.2e+02 Score=25.94 Aligned_cols=85 Identities=18% Similarity=0.103 Sum_probs=48.0
Q ss_pred ccceEEEE-CC-EEEEEee-CCeEEEEEcC--CCCeEEeccCC---CCCCcceeeceeEEEEeCCcEEEEEEeCCCceEE
Q 041774 204 DLHGLTYL-RG-VLYCSFC-NNVLGAFRVS--TNSWKIYPHNR---IRPTSVYLYYGLIESEHEGSLLSVYYDSHRLQWL 275 (382)
Q Consensus 204 ~~~d~v~~-~G-~~Y~l~~-~g~l~~~d~~--~~~~~~~~~p~---~~~~~~~~~~~~~LVe~~G~LllV~~~~~~~~~~ 275 (382)
.-..++++ +| .+|++.+ .+.|.+|++. ...++.+..-+ ...... .......+..+|+.+.|.-.... .+.
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~i~ispdg~~lyvsnr~~~-sI~ 270 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE-NAPAEIAISPDGRFLYVSNRGSN-SIS 270 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS-SSEEEEEE-TTSSEEEEEECTTT-EEE
T ss_pred CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc-CCceeEEEecCCCEEEEEeccCC-EEE
Confidence 44567776 44 6888874 5679999887 33454433211 111100 01122334457887777665555 899
Q ss_pred EEEEEcCCCCEEEcc
Q 041774 276 VFRFDLIKENWVEVN 290 (382)
Q Consensus 276 V~~ld~~~~~W~~v~ 290 (382)
||++|.+.++...+.
T Consensus 271 vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQ 285 (345)
T ss_dssp EEEECTTTTTEEEEE
T ss_pred EEEEecCCCceEEEE
Confidence 999988766655543
No 79
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=31.29 E-value=4.2e+02 Score=24.34 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=27.3
Q ss_pred cccceEEEE--CCEEEEEeeCCeEEEEEcCCCCeEEe
Q 041774 203 GDLHGLTYL--RGVLYCSFCNNVLGAFRVSTNSWKIY 237 (382)
Q Consensus 203 ~~~~d~v~~--~G~~Y~l~~~g~l~~~d~~~~~~~~~ 237 (382)
..+.+++.| .+.+..-+..|.|.+||+....+...
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 456777775 67899999999999999987655433
No 80
>PTZ00486 apyrase Superfamily; Provisional
Probab=29.57 E-value=1.8e+02 Score=27.80 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=24.1
Q ss_pred ccceEEEECCEEEEEe-eCCeEEEEEcCCC
Q 041774 204 DLHGLTYLRGVLYCSF-CNNVLGAFRVSTN 232 (382)
Q Consensus 204 ~~~d~v~~~G~~Y~l~-~~g~l~~~d~~~~ 232 (382)
..+..+.+||++|.++ ++|-++.++....
T Consensus 116 ELSELv~FngkLys~DDrTGiVy~i~~~~~ 145 (352)
T PTZ00486 116 ELSELVSFNGKLYGFDDRTGIVYEIDIDKK 145 (352)
T ss_pred chhhhheeCCEEEEEeCCceEEEEEEcCCC
Confidence 5678899999999997 6799998876654
No 81
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.28 E-value=8e+02 Score=26.96 Aligned_cols=89 Identities=11% Similarity=0.188 Sum_probs=45.1
Q ss_pred EEEEEecCC-CceEEeecCCcccccceEEEECCEEEEE--eeCCeEEEEEcCCCC-eEEeccCCCCCCcceeeceeEEEE
Q 041774 182 CISTCKPGE-RTWTRHFFDGFYGDLHGLTYLRGVLYCS--FCNNVLGAFRVSTNS-WKIYPHNRIRPTSVYLYYGLIESE 257 (382)
Q Consensus 182 ~i~~~r~gd-~~W~~~~~~~~~~~~~d~v~~~G~~Y~l--~~~g~l~~~d~~~~~-~~~~~~p~~~~~~~~~~~~~~LVe 257 (382)
.+..||..+ ..|..-..-......+.++||--.=..+ ..++.|-+||+..++ .+... ... .+.+++.
T Consensus 229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr----ren-----dRFW~la 299 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR----REN-----DRFWILA 299 (1202)
T ss_pred eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee----ccC-----CeEEEEE
Confidence 445566543 5666421111223455666665333334 467789999998653 12111 111 2334444
Q ss_pred eC--CcEEEEEEeCCCceEEEEEEEcC
Q 041774 258 HE--GSLLSVYYDSHRLQWLVFRFDLI 282 (382)
Q Consensus 258 ~~--G~LllV~~~~~~~~~~V~~ld~~ 282 (382)
.. +.|+...... .+.||+++.+
T Consensus 300 ahP~lNLfAAgHDs---Gm~VFkleRE 323 (1202)
T KOG0292|consen 300 AHPELNLFAAGHDS---GMIVFKLERE 323 (1202)
T ss_pred ecCCcceeeeecCC---ceEEEEEccc
Confidence 43 5666555543 5777777644
No 82
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=27.96 E-value=6.4e+02 Score=25.43 Aligned_cols=97 Identities=9% Similarity=0.078 Sum_probs=55.3
Q ss_pred ceEEEEcCCCCceeeCCCCcccCcceEEEcCCCCCCCeEEEEEEEeeCCCeEEEEEEecCCCceEEeecCCcccccceE-
Q 041774 130 SSLFFYNPFSASIIELPPLHMFSSDKATFSTAPTSLFCTVFVLSVYYSTRRICISTCKPGERTWTRHFFDGFYGDLHGL- 208 (382)
Q Consensus 130 ~~~~l~NP~T~~~i~LP~~~~~~~~~v~~s~~p~s~~~~v~~i~~~~~~~~~~i~~~r~gd~~W~~~~~~~~~~~~~d~- 208 (382)
++.|+.||-.+..++++.-..-.|. -++.+|. -.|++.. .++ .+.+|..+...=..+. +.+ ..+..+
T Consensus 341 GkaFi~~~~~~~~iqv~~~~~VrY~--r~~~~~e---~~vigt~---dgD--~l~iyd~~~~e~kr~e-~~l-g~I~av~ 408 (668)
T COG4946 341 GKAFIMRPWDGYSIQVGKKGGVRYR--RIQVDPE---GDVIGTN---DGD--KLGIYDKDGGEVKRIE-KDL-GNIEAVK 408 (668)
T ss_pred CcEEEECCCCCeeEEcCCCCceEEE--EEccCCc---ceEEecc---CCc--eEEEEecCCceEEEee-CCc-cceEEEE
Confidence 5889999999999999975432222 2333332 2233322 343 4455655555444442 222 122233
Q ss_pred EEECCEEEEEe-eCCeEEEEEcCCCCeEEec
Q 041774 209 TYLRGVLYCSF-CNNVLGAFRVSTNSWKIYP 238 (382)
Q Consensus 209 v~~~G~~Y~l~-~~g~l~~~d~~~~~~~~~~ 238 (382)
+.-+|++-++. ..++|+++|++....+++.
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 23578877765 4578999999887776664
No 83
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=27.89 E-value=1.6e+02 Score=18.58 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=21.2
Q ss_pred ceEEEECCEEEEEeeCCeEEEEEcCC
Q 041774 206 HGLTYLRGVLYCSFCNNVLGAFRVST 231 (382)
Q Consensus 206 ~d~v~~~G~~Y~l~~~g~l~~~d~~~ 231 (382)
.++...++-.|+-+..+.|.++|++.
T Consensus 5 ~~v~v~g~yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 5 RDVAVSGNYAYVADGNNGLVIVDISN 30 (42)
T ss_pred EEEEEECCEEEEEeCCCCEEEEECCC
Confidence 45667788889888878899999986
No 84
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=27.45 E-value=4.3e+02 Score=24.72 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=32.4
Q ss_pred CCEEEEEe-eCCeEEEEEcCCCCeEEeccCCCCCCcceeeceeEEEEeCCcEEEE
Q 041774 212 RGVLYCSF-CNNVLGAFRVSTNSWKIYPHNRIRPTSVYLYYGLIESEHEGSLLSV 265 (382)
Q Consensus 212 ~G~~Y~l~-~~g~l~~~d~~~~~~~~~~~p~~~~~~~~~~~~~~LVe~~G~LllV 265 (382)
.|+++.-+ ..|.++.||++...|...+.|...+. -....|+-.|.+.+-
T Consensus 243 ig~~wittwg~g~l~rfdPs~~sW~eypLPgs~ar-----pys~rVD~~grVW~s 292 (353)
T COG4257 243 IGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKAR-----PYSMRVDRHGRVWLS 292 (353)
T ss_pred cCcEEEeccCCceeeEeCcccccceeeeCCCCCCC-----cceeeeccCCcEEee
Confidence 36777665 46789999999888988776633222 123456667776663
No 85
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=25.49 E-value=97 Score=28.84 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=32.1
Q ss_pred ccceEEEECCEEEEEe-eCCeEEEEEcCCC-CeEEeccCCCCCCc-ceeeceeEEEEeCCcEEEEEE
Q 041774 204 DLHGLTYLRGVLYCSF-CNNVLGAFRVSTN-SWKIYPHNRIRPTS-VYLYYGLIESEHEGSLLSVYY 267 (382)
Q Consensus 204 ~~~d~v~~~G~~Y~l~-~~g~l~~~d~~~~-~~~~~~~p~~~~~~-~~~~~~~~LVe~~G~LllV~~ 267 (382)
..++.+.|||++|.++ ++|.|+.++-... .|-++.. +.+. .--....++..-+++|++-..
T Consensus 55 ELSELv~FngkLys~DDrTGiVyeI~~~~~vPwviL~d---GdG~~~kGfK~EWaTVKd~~LyvGs~ 118 (291)
T PF06079_consen 55 ELSELVVFNGKLYSFDDRTGIVYEIKGDKAVPWVILSD---GDGNTSKGFKAEWATVKDDKLYVGSI 118 (291)
T ss_dssp -EEEEEEETTEEEEEETTT-EEEEEETTEEEEEEE-BS---TTTTESSB----EEEEETTEEEEE--
T ss_pred eeeeeeeECCEEeeeeCCCceEEEEeCCceeceEEEeC---CCCCccccccceeeEEeCCeeeeccC
Confidence 5789999999999997 6788888765421 2333322 1110 000123456666777776654
No 86
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=25.47 E-value=3.9e+02 Score=27.84 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=42.6
Q ss_pred ccceEEEECCEEEEEeeCCeEEEEEcCCC-CeEEeccCCCCCCcceeeceeEEEE-eCCcEEEEEEeC-CCceEEEEEEE
Q 041774 204 DLHGLTYLRGVLYCSFCNNVLGAFRVSTN-SWKIYPHNRIRPTSVYLYYGLIESE-HEGSLLSVYYDS-HRLQWLVFRFD 280 (382)
Q Consensus 204 ~~~d~v~~~G~~Y~l~~~g~l~~~d~~~~-~~~~~~~p~~~~~~~~~~~~~~LVe-~~G~LllV~~~~-~~~~~~V~~ld 280 (382)
.-.++++++|++|++.+.|.=+.+|++.. +.+.+..-..............-++ ..|+|+-..... ....+.+|++|
T Consensus 239 ANT~vv~~~grLlAL~E~g~Py~l~~d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d 318 (590)
T PLN02258 239 ANAGLVYFNGRLLAMSEDDLPYQVRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFS 318 (590)
T ss_pred CceeEEEECCEEEEEEcCCCceEecCCCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEEC
Confidence 35679999999999999988777765422 2332211000000000001112334 358887776542 21256777777
Q ss_pred cCC
Q 041774 281 LIK 283 (382)
Q Consensus 281 ~~~ 283 (382)
.+.
T Consensus 319 ~~G 321 (590)
T PLN02258 319 PDG 321 (590)
T ss_pred CCC
Confidence 643
No 87
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=25.12 E-value=6.2e+02 Score=24.28 Aligned_cols=128 Identities=14% Similarity=0.103 Sum_probs=69.7
Q ss_pred EEEEEecCCCceEEeecCCc--ccccceEEEE-CCE-EEEEe-eCCeEEEEEcCC--CCeEEeccCCCCCCc--ceeece
Q 041774 182 CISTCKPGERTWTRHFFDGF--YGDLHGLTYL-RGV-LYCSF-CNNVLGAFRVST--NSWKIYPHNRIRPTS--VYLYYG 252 (382)
Q Consensus 182 ~i~~~r~gd~~W~~~~~~~~--~~~~~d~v~~-~G~-~Y~l~-~~g~l~~~d~~~--~~~~~~~~p~~~~~~--~~~~~~ 252 (382)
+|.+|+-.|..-+....-.. ...-..++|| ||+ .|+++ ..+.|.+++.+. .+++.++.-...|.. +..+..
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence 55667666655544321111 1355778998 565 46666 456777776655 566655432112211 111122
Q ss_pred eEEEEeCCcEEEEEEeCCCceEEEEEEEcCCCCEE--EcccCCC---cEEEEcCCCeeeeecc
Q 041774 253 LIESEHEGSLLSVYYDSHRLQWLVFRFDLIKENWV--EVNRLDD---RALFLNPSSTSMKLAV 310 (382)
Q Consensus 253 ~~LVe~~G~LllV~~~~~~~~~~V~~ld~~~~~W~--~v~~Lg~---~alFlg~~~s~~~~~~ 310 (382)
..-+..+|+-|.|.-.... ++-+|++|+..++.+ +..+.++ |-+=+..+..+.+.+.
T Consensus 248 aIhis~dGrFLYasNRg~d-sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 248 AIHISPDGRFLYASNRGHD-SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred EEEECCCCCEEEEecCCCC-eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 3344567777777655545 899999999766433 2233333 4555555555655554
No 88
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=24.86 E-value=87 Score=25.09 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=22.2
Q ss_pred eEEEEEEEcCCCCEEEcccCCCcEEEEcC
Q 041774 273 QWLVFRFDLIKENWVEVNRLDDRALFLNP 301 (382)
Q Consensus 273 ~~~V~~ld~~~~~W~~v~~Lg~~alFlg~ 301 (382)
.+.||+++..+.+|+|..-=| +|||-.
T Consensus 28 ~v~vY~f~~~~~~W~K~~iEG--~LFv~~ 54 (122)
T PF06058_consen 28 HVVVYKFDHETNEWEKTDIEG--TLFVYK 54 (122)
T ss_dssp EEEEEEEETTTTEEEEEEEEE--EEEEEE
T ss_pred eEEEEeecCCCCcEeecCcEe--eEEEEE
Confidence 689999999999999987533 788763
No 89
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.94 E-value=5.5e+02 Score=23.53 Aligned_cols=137 Identities=13% Similarity=0.171 Sum_probs=66.5
Q ss_pred EEEEEecCCCceEEeec-CCcccccceEEE--EC-C-EEEEEeeCCeEEEEEcCCC-CeEE--eccC-CCCCCcceee--
Q 041774 182 CISTCKPGERTWTRHFF-DGFYGDLHGLTY--LR-G-VLYCSFCNNVLGAFRVSTN-SWKI--YPHN-RIRPTSVYLY-- 250 (382)
Q Consensus 182 ~i~~~r~gd~~W~~~~~-~~~~~~~~d~v~--~~-G-~~Y~l~~~g~l~~~d~~~~-~~~~--~~~p-~~~~~~~~~~-- 250 (382)
++.+|+-+...|+.... ........++.+ |+ | .+.|-.++|.|.+++...+ .|.. +... +++-..-.+.
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 56788888889987521 111122333333 22 3 4555667888877777654 3321 1110 0000000000
Q ss_pred -ceeEEEEeCCcEEEEEEeCC---CceEEEEEEEcCCCCEEEcccCCCcEEEEcCC-------CeeeeeccCCCCcCCCe
Q 041774 251 -YGLIESEHEGSLLSVYYDSH---RLQWLVFRFDLIKENWVEVNRLDDRALFLNPS-------STSMKLAVDDASELANT 319 (382)
Q Consensus 251 -~~~~LVe~~G~LllV~~~~~---~~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~-------~s~~~~~~~~~g~~~N~ 319 (382)
..--||+.+. .--|.+..+ +..++||+.|.. .|+.-..|.++.=|+-.- ...+..|+ +.-.++.
T Consensus 161 ~~~g~~~~~~~-~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS--~SqDg~v 235 (299)
T KOG1332|consen 161 SAPGSLVDQGP-AAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS--CSQDGTV 235 (299)
T ss_pred CCCccccccCc-ccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEE--ecCCCcE
Confidence 0001222111 111222111 237899999865 787766687777666532 12222333 4567999
Q ss_pred EEEc
Q 041774 320 IHVE 323 (382)
Q Consensus 320 IYf~ 323 (382)
|.++
T Consensus 236 iIwt 239 (299)
T KOG1332|consen 236 IIWT 239 (299)
T ss_pred EEEE
Confidence 9998
No 90
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=21.54 E-value=7.2e+02 Score=25.37 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=24.3
Q ss_pred ceEEEECCEEEEEeeCCeEEEEEcCCC--CeEE
Q 041774 206 HGLTYLRGVLYCSFCNNVLGAFRVSTN--SWKI 236 (382)
Q Consensus 206 ~d~v~~~G~~Y~l~~~g~l~~~d~~~~--~~~~ 236 (382)
..++..+|++|+.+..+.|+++|..+. .|+.
T Consensus 63 stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~ 95 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYSRVYALDAKTGKELWKY 95 (527)
T ss_pred cCCEEECCEEEEECCCCcEEEEECCCCceeeEe
Confidence 456778999999988899999998754 4553
Done!