BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041775
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain
pdb|3IKK|B Chain B, Crystal Structure Analysis Of Msp Domain
Length = 127
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 4 QLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKS 62
Q+L ++P+ ELKF + +++L N T V FKVKTT+P++YCVRPN GII +
Sbjct: 8 QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGA 67
Query: 63 TCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRV 122
+ + +V +Q P + K KF++QS P T+D + +D + ++KLR
Sbjct: 68 SINVSVMLQPFDYDPNEK-SKHKFMVQSMFAPTDTSDMEAVWKEAKPED---LMDSKLRC 123
Query: 123 IL 124
+
Sbjct: 124 VF 125
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp
Domain And Human Osbp Ffat Motif
Length = 130
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 10 PKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVT 69
P +LKF + +++L N + V FKVKTT+P++YCVRPN GII P ST +V
Sbjct: 15 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM 74
Query: 70 MQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISP 127
+Q P+ K KF++Q+ P T+D + D+ + ++KLR + P
Sbjct: 75 LQPFDYD-PNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE---LMDSKLRCVFEMP 128
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp-
Associated Proteina
Length = 147
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 10 PKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVT 69
P +LKF + +++L N + V FKVKTT+P++YCVRPN GII P S +V
Sbjct: 20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM 79
Query: 70 MQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISP 127
+Q P+ K KF++Q+ P +D + D+ + ++KLR + P
Sbjct: 80 LQPFDYD-PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDE---LMDSKLRCVFEMP 133
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|B Chain B, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|C Chain C, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|D Chain D, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|E Chain E, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|F Chain F, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
Length = 128
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 10 PKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVT 69
P +LKF + +++L N + V FKVKTT+P++YCVRPN G+I P S +V
Sbjct: 16 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM 75
Query: 70 MQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVIL 124
+Q P+ K KF++Q+ P +D + D+ + ++KLR +
Sbjct: 76 LQPFDYD-PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDE---LMDSKLRCVF 126
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp
Homology Domain
Length = 128
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 10 PKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVT 69
P +LKF + +++L N + V FKVKTT+P++YCVRPN G+I P S +V
Sbjct: 16 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVX 75
Query: 70 MQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVIL 124
+Q P+ K KF +Q+ P +D + D+ + ++KLR +
Sbjct: 76 LQPFDYD-PNEKSKHKFXVQTIFAPPNISDXEAVWKEAKPDE---LXDSKLRCVF 126
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna
6030424e15
Length = 152
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 5 LLEIQP-KELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKST 63
LL I P +EL F + + LTN T + VAFKV+TT+P+KY V+P+ P ++
Sbjct: 18 LLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGAS 77
Query: 64 CDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRY-IQENKLRV 122
D V+ + +D+FLI + + + S F K+ R + E++LR
Sbjct: 78 IDIIVSPHGGLT----VSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRC 133
Query: 123 ILI--SPPNSPVLS 134
+ S PNS +LS
Sbjct: 134 HTVESSKPNSLMLS 147
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 113 RYIQENKLRVILISPPNSPVLSPINGVLKQGP---TYESSSLKDPVFSKFE-ILTPPH 166
++I E V+ I PN+P LS + +GP T+ +S+ K S F+ IL P H
Sbjct: 101 KWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKSLTLSVFQGILRPYH 158
>pdb|4AQF|A Chain A, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
pdb|4AQF|B Chain B, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
Length = 483
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 263 LTSTKDAELELRKDVISSEELTSTEDPELKPRKD-----EANSVELKEEKVIELNLPKEV 317
+ S ++ EL+ DV E+LT + LK RKD AN+ L + + E +P E+
Sbjct: 104 IKSWDESYTELKVDVPKIEQLTGYQQAALKWRKDIGFRVNANTAALSNKVLAEYKVPGEI 163
Query: 318 V 318
V
Sbjct: 164 V 164
>pdb|4AQF|C Chain C, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
pdb|4AQG|A Chain A, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
Length = 483
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 263 LTSTKDAELELRKDVISSEELTSTEDPELKPRKD-----EANSVELKEEKVIELNLPKEV 317
+ S ++ EL+ DV E+LT + LK RKD AN+ L + + E +P E+
Sbjct: 104 IKSWDESYTELKVDVPKIEQLTGYQQAALKWRKDIGFRVNANTAALSNKVLAEYKVPGEI 163
Query: 318 V 318
V
Sbjct: 164 V 164
>pdb|1GRW|A Chain A, C. Elegans Major Sperm Protein
pdb|1GRW|B Chain B, C. Elegans Major Sperm Protein
pdb|1GRW|C Chain C, C. Elegans Major Sperm Protein
pdb|1GRW|D Chain D, C. Elegans Major Sperm Protein
Length = 126
Score = 31.6 bits (70), Expect = 0.93, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 27 VRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKF 86
+++ N++ + + +KTT+ K+ V P G++ PK V+ A A D D+
Sbjct: 31 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQED-TNNDRI 89
Query: 87 LIQSTVVPVGTTDE 100
++ T P G +
Sbjct: 90 TVEWTNTPDGAAKQ 103
>pdb|1M1S|A Chain A, Structure Of Wr4, A C.Elegans Msp Family Member
Length = 116
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 29 LTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKFLI 88
+T+ + +AFKVK+++ + Y VRP G + K ++ + PP +DK +I
Sbjct: 31 ITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDIN---RLPGPPK---EDKIVI 84
Query: 89 QSTVVPVGTTD 99
Q VP TD
Sbjct: 85 QYAEVPAEETD 95
>pdb|1MSP|A Chain A, Major Sperm Protein, Alpha Isoform (Recombinant), Ph 4.6
pdb|1MSP|B Chain B, Major Sperm Protein, Alpha Isoform (Recombinant), Ph 4.6
pdb|3MSP|A Chain A, Motile Major Sperm Protein (Msp) Of Ascaris Suum, Nmr, 20
Structures
pdb|3MSP|B Chain B, Motile Major Sperm Protein (Msp) Of Ascaris Suum, Nmr, 20
Structures
Length = 126
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 27 VRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKF 86
+++TN + + +KTT+ ++ V P G++ PK V+ A D+ D+
Sbjct: 31 IKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDL-NNDRI 89
Query: 87 LIQSTVVPVGTTDE 100
I+ T P G +
Sbjct: 90 TIEWTNTPDGAAKQ 103
>pdb|1NQ7|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 244
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 25 CSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTC-DFNVTMQAQAVAPPD--MV 81
C++++T+ + V F + T + C N I+L KS C + + +A P + ++
Sbjct: 55 CAIQITHAIQYVVEFAKRITGFMELC--QNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL 112
Query: 82 CKDKFLIQSTVVPVGTTDEDITASMFAKD-DGRYIQENKLRV----ILISPPNSPVLSPI 136
+ K+ +G+ D A FAK+ + E ++ + +LISP + +L P
Sbjct: 113 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPR 172
Query: 137 NGVLKQGPTY-------ESSSLKDPVFSKFEILTPPHTVSKNVEGSKLVNAEKLKPDKVE 189
Q Y + + L D +K P T N+ G KL ++ PD V
Sbjct: 173 KVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVN 232
Query: 190 ELKP 193
L P
Sbjct: 233 TLFP 236
>pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Ror Beta
Ligand-Binding Domain In The Active Conformation
Length = 252
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 25 CSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTC-DFNVTMQAQAVAPPD--MV 81
C++++T+ + V F + T + C N I+L KS C + + +A P + ++
Sbjct: 62 CAIQITHAIQYVVEFAKRITGFMELC--QNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL 119
Query: 82 CKDKFLIQSTVVPVGTTDEDITASMFAKD-DGRYIQENKLRV----ILISPPNSPVLSPI 136
+ K+ +G+ D A FAK+ + E ++ + +LISP + +L P
Sbjct: 120 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPR 179
Query: 137 NGVLKQGPTY-------ESSSLKDPVFSKFEILTPPHTVSKNVEGSKLVNAEKLKPDKVE 189
Q Y + + L D +K P T N+ G KL ++ PD V
Sbjct: 180 KVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVN 239
Query: 190 ELKP 193
L P
Sbjct: 240 TLFP 243
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 168 VSKNVEGSKLVNAEKLKPDKVEELKPR-EDFFSGEVLKSAKDTEVKLRKDVVDSQE 222
+ KN G+ +VN +++ + +EE+K + + F G VL+ K KL V +S+E
Sbjct: 31 ILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRE 86
>pdb|4AKL|A Chain A, Structure Of The Crimean-Congo Haemorrhagic Fever Virus
Nucleocapsid Protein
pdb|4AKL|B Chain B, Structure Of The Crimean-Congo Haemorrhagic Fever Virus
Nucleocapsid Protein
Length = 482
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 263 LTSTKDAELELRKDVISSEELTSTEDPELKPRKD-----EANSVELKEEKVIELNLPKEV 317
+ S ++ +EL+ +V E+L + + LK RKD AN+ L + + E +P E+
Sbjct: 103 IKSWDESYIELKVEVPKIEQLFNYQQAALKWRKDIGFRVNANTAALSNKVLAEYKVPGEI 162
Query: 318 V 318
V
Sbjct: 163 V 163
>pdb|3NIP|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|E Chain E, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|F Chain F, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIQ|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase
pdb|3NIQ|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase
Length = 326
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 94 PVGTTDEDITASMFAKDDGRYIQENKLRVI----LISPPNSPVLSPINGVLKQGPTYESS 149
P+ T I S+++ DD + +E +RVI + L+ V+ GPTY S
Sbjct: 180 PLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELGVEATLAEARRVVGAGPTYVSF 239
Query: 150 SLK--DPVFSKFEILTPPHTVSKNVEGSKLVNAEKL 183
+ DP F+ P T + + G + A++L
Sbjct: 240 DVDVLDPAFA-------PGTGTPEIGGMTSLQAQQL 268
>pdb|1N4H|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 259
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 25 CSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTC-DFNVTMQAQAVAPPD--MV 81
C++++T+ + V F + T + C N I+L KS C + + +A P + ++
Sbjct: 62 CAIQITHAIQYVVEFAKRITGFMELC--QNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL 119
Query: 82 CKDKFLIQSTVVPVGTTDEDITASMFAKD-DGRYIQENKLRV----ILISPPNSPVLSPI 136
+ K+ +G+ D A FAK+ + E ++ + +LISP + +L P
Sbjct: 120 FEGKYGGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPR 179
Query: 137 NGVLKQGPTY-------ESSSLKDPVFSKFEILTPPHTVSKNVEGSKLVNAEKLKPDKVE 189
Q Y + + L D +K P T N+ G KL ++ PD V
Sbjct: 180 KVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVN 239
Query: 190 ELKP 193
L P
Sbjct: 240 TLFP 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.130 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,190,555
Number of Sequences: 62578
Number of extensions: 514869
Number of successful extensions: 1273
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1223
Number of HSP's gapped (non-prelim): 95
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)