BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041775
(432 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22
PE=1 SV=1
Length = 386
Score = 321 bits (822), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 192/443 (43%), Positives = 263/443 (59%), Gaps = 71/443 (16%)
Query: 1 MNKQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILP 60
MN LL+IQP+ L+F +LKKQ+SC V+LTN THHYVAFKVKTTSPKKYCVRPNVG++ P
Sbjct: 1 MNMPLLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAP 60
Query: 61 KSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKL 120
KSTC+F V MQA PPDMVCKDKFLIQST V TTDEDITASMF+K +G++I+ENKL
Sbjct: 61 KSTCEFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKL 120
Query: 121 RVILISPPNSPVLSPINGVLKQGPTYESSSLKDPVFSKFEILTPPHTVSKNVEGSKLVNA 180
RV L+ P +SP LSPIN KQG +E S LKD ++S+ E L PP + V+ ++V
Sbjct: 121 RVTLVPPSDSPELSPIN-TPKQGAVFEDSILKDRLYSQSETLAPPQYEGEIVKEPRMVGH 179
Query: 181 EKLK-PDKVEELK-PR-------EDFFSGEVLKSAKDTEVKLRKDVVDSQELTPTVNAD- 230
++LK D +ELK P+ ED ++ LK+ KD+ DS + D
Sbjct: 180 DELKAADNAKELKTPKMATVDFVEDRYTANDLKATKDS--------YDSSRMAKETGFDP 231
Query: 231 LNPRKDVADGEELKSSK--DTELKPREDIIRGEELTSTKDAELELRKDVISSEELTSTED 288
+ KD DG +K++ D +K D+ R + T+ + +
Sbjct: 232 IRSHKDADDGRAIKATTNLDAPMKKAMDLPRDQGFTNG----------------IAVDSE 275
Query: 289 PELKPRKDEANSVELKEEKVIELNLPKEVVNGEELQPKKDAELKLMKELEFKAGKAAEEL 348
P++ KE V++L + +G+ + + +EL
Sbjct: 276 PKIS-----------KERDVVQL----QKTDGQNV-------------------RGLDEL 301
Query: 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNV 408
+LVKDIEEMK K++ L+SKL +A+ TISKL EE + Q ++ L+ EL LR+K +VK V
Sbjct: 302 KLVKDIEEMKLKVDALESKLKQADSTISKLMEERSISSQHRQSLQHELAELRTKKIVKEV 361
Query: 409 HVGFPLLFVCMVALISFVLGRLI 431
H GFPLL+VC+VA I++V+G +
Sbjct: 362 HNGFPLLYVCVVAFIAYVIGHFL 384
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11
PE=1 SV=1
Length = 256
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 111/160 (69%), Gaps = 2/160 (1%)
Query: 2 NKQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPK 61
N +LL ++P +L+F FELKKQ SCS+ LTN T + VAFKVKTT+PKKYCVRPN G++LP+
Sbjct: 19 NSELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR 78
Query: 62 STCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLR 121
STC+ VTMQAQ AP DM CKDKFL+Q + G T +++T MF+K+ G ++E KLR
Sbjct: 79 STCEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLR 138
Query: 122 VILISPPNSPVLSPINGVLKQGPTYESSSLKDPVFSKFEI 161
V ++PP P SP++ ++G + +S + S+F
Sbjct: 139 VTYVAPPRPP--SPVHEGSEEGSSPRASVSDNGHGSEFSF 176
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 365 QSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHVGFPLLF 416
Q SEA I+KLTEE + IQ L+ ELD LR +S K+ G P ++
Sbjct: 188 QENTSEARALITKLTEEKQSAIQLNNRLQRELDQLRRES-KKSQSGGIPFMY 238
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 162 bits (409), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 113/169 (66%), Gaps = 19/169 (11%)
Query: 5 LLEIQPKELKFIFELKKQSSCSVRLTN-NTHHYVAFKVKTTSPKKYCVRPNVGIILPKST 63
L+ I P ELKF FELKKQSSCS++LTN T VAFKVKTT+P+KYCVRPN G++LP +
Sbjct: 6 LVNIHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDS 65
Query: 64 CDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVI 123
C+ VTMQAQ AP DM CKDKFL+Q+ VV GTT +++ A MF K+ GR I++ KLRV+
Sbjct: 66 CNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVV 125
Query: 124 LI--SPP----------NSPVLSPINGVLKQGPTYESSSLKDPVFSKFE 160
I +PP NSP+ S +N + Q S+SL D V FE
Sbjct: 126 YIPANPPSPVPEGSEEGNSPMAS-LNDIASQ-----SASLFDDVSRTFE 168
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12
PE=1 SV=1
Length = 239
Score = 161 bits (408), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 115/189 (60%), Gaps = 20/189 (10%)
Query: 1 MNKQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILP 60
M+ +LL I P +L+F FELKKQ SCS+ L N T +YVAFKVKTT+PKKYCVRPN G++ P
Sbjct: 1 MSNELLTIDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHP 60
Query: 61 KSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKL 120
+S+ + VTMQAQ AP D+ CKDKFL+Q V G T +D+T MF+K+ G ++E KL
Sbjct: 61 RSSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKL 120
Query: 121 RVILISPPNSPVLSPINGVLKQGPTYESSSLKDPVFSKFEILTPPHTVSKNVEGSKLVNA 180
RV+ ++PP P SP+ ++G +P +VS N S A
Sbjct: 121 RVVYVAPPRPP--SPVREGSEEGS------------------SPRASVSDNGNASDFTAA 160
Query: 181 EKLKPDKVE 189
+ D+V+
Sbjct: 161 PRFSADRVD 169
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 363 ELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHVGFPLLF 416
+ Q SEA ++KLTEE +Q L+ ELD LR +S ++ G P ++
Sbjct: 169 DAQDNSSEARALVTKLTEEKNSAVQLNNRLQQELDQLRRES-KRSKSGGIPFMY 221
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21
PE=2 SV=1
Length = 220
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 91/127 (71%)
Query: 4 QLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKST 63
QL+ IQP ELKF+FEL+KQS C +++ N T +YVAFKVKTTSPKKY VRPN G+I P +
Sbjct: 8 QLISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDS 67
Query: 64 CDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVI 123
C VT+QAQ PPDM CKDKFL+QST+VP T +++ F KD G+ + E KL+V
Sbjct: 68 CIIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVS 127
Query: 124 LISPPNS 130
I+P +
Sbjct: 128 YITPSTT 134
Score = 38.9 bits (89), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 369 SEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHVGFPLLFVCMVALISFVLG 428
SE TI +L EE +++ + L+ EL+T+R + +N G L MV LI ++G
Sbjct: 150 SETISTIQRLKEERDAAVKQTQQLQHELETVRRRRNQRNSGNGLSLKLAAMVGLIGLIIG 209
Query: 429 RLI 431
++
Sbjct: 210 FIL 212
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 90/133 (67%)
Query: 2 NKQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPK 61
N +LLEI+P L+F FELKKQ SCS+ LTN T + VAFKVKTT+ YCVRPN G+ILPK
Sbjct: 3 NNELLEIEPMYLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPK 62
Query: 62 STCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLR 121
STC VTMQAQ P DM +KF+IQS + G T +++T MF+K+ G ++E KLR
Sbjct: 63 STCKVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLR 122
Query: 122 VILISPPNSPVLS 134
V + + + S
Sbjct: 123 VTYVCSTTTNITS 135
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 117/203 (57%), Gaps = 25/203 (12%)
Query: 1 MNKQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILP 60
M+ +LL I P +++F EL K+ SCS+ LTN T +YVAFK KTT+ KKY VRPNVG++LP
Sbjct: 172 MSDELLIIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLP 231
Query: 61 KSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKL 120
+S+C+ V MQA AP DM C+DK L Q VV TT +D+T+ MF+K+ G +E +L
Sbjct: 232 RSSCEVLVIMQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRL 291
Query: 121 RVILISPPNSPVLSPINGVLKQGPTYESS----------------SLKDPVFSK------ 158
+V+ ++PP P SP+ ++G + +S SL P+FS
Sbjct: 292 KVMYVTPPQPP--SPVQEGTEEGSSPRASVSDNGNASEAFVDMLRSLLVPLFSNAASSTD 349
Query: 159 -FEILTPPHTVSKNVEGSKLVNA 180
I P + V N G +L N+
Sbjct: 350 DHGITLPQYQVFINFRGDELRNS 372
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 98/150 (65%), Gaps = 3/150 (2%)
Query: 4 QLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKST 63
+LL +++F EL KQ SCS+ LTN T +YVAFK +TT PK YCV+P+VG++LP+S+
Sbjct: 5 ELLTFDHVDIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSS 64
Query: 64 CDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVI 123
C+ V MQA AP D CKDK L Q VV GT D+++T+ MF+K+ G ++E ++I
Sbjct: 65 CEVLVVMQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKII 124
Query: 124 LISPPNSPVLSPINGVLKQGPTYESSSLKD 153
++PP SP+ L+ G + S+S+ D
Sbjct: 125 YVAPPQPQ--SPVQEGLEDGSS-PSASVSD 151
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16G5.05c PE=1 SV=1
Length = 383
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 37 VAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAP-PDMVCKDKFLIQSTVVPV 95
V FKVKTT+PK YCVRPN G I PKST + V +QA P PD C+DKFLIQS +
Sbjct: 33 VIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPAPDFKCRDKFLIQSMAIGD 92
Query: 96 GTTDEDITASMFAKD---DGRYIQENKLRVILIS--PPNS 130
T F + GR I + K+R + + PP S
Sbjct: 93 ADTSNVENYHEFWTEMEKQGRSIFDRKIRCVYSTKQPPQS 132
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus
scrofa GN=VAPB PE=3 SV=1
Length = 243
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 4 QLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKS 62
Q+L ++P+ ELKF + +++L N T V FKVKTT+P++YCVRPN GII +
Sbjct: 6 QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGA 65
Query: 63 TCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRV 122
+ + +V +Q P + K KF++QS P T+D + +D + ++KLR
Sbjct: 66 SINVSVMLQPFDYDPNEK-SKHKFMVQSMFAPADTSDMEAAWKEAKPED---LMDSKLRC 121
Query: 123 IL 124
+
Sbjct: 122 VF 123
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos
taurus GN=VAPB PE=2 SV=1
Length = 243
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 4 QLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKS 62
Q+L ++P+ ELKF + +++L N T V FKVKTT+P++YCVRPN GII +
Sbjct: 6 QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGA 65
Query: 63 TCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRV 122
+ + +V +Q P + K KF++QS P T+D + +D + ++KLR
Sbjct: 66 SINVSVMLQPFDYDPNEK-SKHKFMVQSMFAPTDTSDMEAVWKEAKPED---LMDSKLRC 121
Query: 123 ILISP 127
+ P
Sbjct: 122 VFELP 126
>sp|O95292|VAPB_HUMAN Vesicle-associated membrane protein-associated protein B/C OS=Homo
sapiens GN=VAPB PE=1 SV=3
Length = 243
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 4 QLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKS 62
Q+L ++P+ ELKF + +++L N T V FKVKTT+P++YCVRPN GII +
Sbjct: 6 QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGA 65
Query: 63 TCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRV 122
+ + +V +Q P + K KF++QS P T+D + +D + ++KLR
Sbjct: 66 SINVSVMLQPFDYDPNEK-SKHKFMVQSMFAPTDTSDMEAVWKEAKPED---LMDSKLRC 121
Query: 123 ILISP 127
+ P
Sbjct: 122 VFELP 126
>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo
abelii GN=VAPA PE=2 SV=2
Length = 249
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 12/150 (8%)
Query: 10 PKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVT 69
P +LKF + +++L N + V FKVKTT+P++YCVRPN GII P ST +V
Sbjct: 20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM 79
Query: 70 MQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPPN 129
+Q P+ K KF++Q+ P T+D + D+ + ++KLR + P
Sbjct: 80 LQPFDYD-PNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE---LMDSKLRCVFEMPNE 135
Query: 130 SPVLS--------PINGVLKQGPTYESSSL 151
+ L+ P+N + GP + S+
Sbjct: 136 NDKLNDMEPSKAVPLNASKQDGPMPKPHSV 165
>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo
sapiens GN=VAPA PE=1 SV=3
Length = 249
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 12/150 (8%)
Query: 10 PKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVT 69
P +LKF + +++L N + V FKVKTT+P++YCVRPN GII P ST +V
Sbjct: 20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM 79
Query: 70 MQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPPN 129
+Q P+ K KF++Q+ P T+D + D+ + ++KLR + P
Sbjct: 80 LQPFDYD-PNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE---LMDSKLRCVFEMPNE 135
Query: 130 SPVLS--------PINGVLKQGPTYESSSL 151
+ L+ P+N + GP + S+
Sbjct: 136 NDKLNDMEPSKAVPLNASKQDGPMPKPHSV 165
>sp|Q9Z269|VAPB_RAT Vesicle-associated membrane protein-associated protein B OS=Rattus
norvegicus GN=Vapb PE=1 SV=3
Length = 243
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 4 QLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKS 62
Q+L ++P+ ELKF + +++L N T V FKVKTT+P++YCVRPN G+I +
Sbjct: 6 QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGA 65
Query: 63 TCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRV 122
+ + +V +Q P + K KF++QS P T+D + +D + ++KLR
Sbjct: 66 SLNVSVMLQPFDYDPNEK-SKHKFMVQSMFAPPDTSDMEAVWKEAKPED---LMDSKLRC 121
Query: 123 IL 124
+
Sbjct: 122 VF 123
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS2 PE=1 SV=3
Length = 244
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCD 65
+EI P L + L +QS+ ++NN+ +AFKVKTT+PK YCVRPN ++ P T
Sbjct: 4 VEISPDVLVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQ 63
Query: 66 FNVTMQAQAVAP-PDMVCKDKFLIQSTVVPV---GTTDEDITASMFAKDDGRYIQENKLR 121
V P D C+DKFL+ + P G D+ + + A+ + I + K++
Sbjct: 64 VQVIFLGLTEEPAADFKCRDKFLVITLPSPYDLNGKAVADVWSDLEAEFKQQAISK-KIK 122
Query: 122 V-ILISP 127
V LISP
Sbjct: 123 VKYLISP 129
>sp|Q9QY76|VAPB_MOUSE Vesicle-associated membrane protein-associated protein B OS=Mus
musculus GN=Vapb PE=2 SV=3
Length = 243
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 4 QLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKS 62
Q+L ++P+ ELKF + +++L N T V FKVKTT P++YCVRPN G+I +
Sbjct: 6 QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAGA 65
Query: 63 TCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRV 122
+ + +V +Q P + K KF++QS P T+D + +D + ++KLR
Sbjct: 66 SLNVSVMLQPFDYDPNEK-SKHKFMVQSMFAPPDTSDMEAVWKEAKPED---LMDSKLRC 121
Query: 123 IL 124
+
Sbjct: 122 VF 123
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein
OS=Aplysia californica PE=2 SV=1
Length = 260
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
Query: 2 NKQLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILP 60
++Q L ++P EL+F + ++L+N T + FKVKTT+PK+YCVRPN GI+ P
Sbjct: 4 HEQALILEPAGELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEP 63
Query: 61 KSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDG--RYIQEN 118
K++ V +Q P+ K KF++QS P D + + D + +
Sbjct: 64 KTSIAVAVMLQPFNYD-PNEKNKHKFMVQSMYAP----DHVVESQELLWKDAPPESLMDT 118
Query: 119 KLRVILISPPNS--PVLSPINGVLKQGPTYESSSLKDPVFS 157
KLR + P S S + G + S+L+DP +
Sbjct: 119 KLRCVFEMPDGSHQAPASDASRATDAGAHFSESALEDPTVA 159
>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos
taurus GN=VAPA PE=2 SV=1
Length = 249
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
Query: 10 PKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVT 69
P +LKF + +++L N + V FKVKTT+P++YCVRPN GII P T +V
Sbjct: 20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTVTVSVM 79
Query: 70 MQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPPN 129
+Q P+ K KF++Q+ P +D + D+ + ++KLR + P
Sbjct: 80 LQPFDYD-PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDE---LMDSKLRCVFEMPNE 135
Query: 130 SPVLS--------PINGVLKQGPTYESSSL 151
+ L+ P+N + GP + S+
Sbjct: 136 NDKLNDMEPSKAVPLNAAKQDGPVPKPHSV 165
>sp|Q9WV55|VAPA_MOUSE Vesicle-associated membrane protein-associated protein A OS=Mus
musculus GN=Vapa PE=1 SV=2
Length = 249
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 29/170 (17%)
Query: 10 PKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVT 69
P +LKF + +++L N + V FKVKTT+P++YCVRPN GII P S +V
Sbjct: 20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM 79
Query: 70 MQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPPN 129
+Q P+ K KF++Q+ P +D + D+ + ++KLR + P
Sbjct: 80 LQPFDYD-PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDE---LMDSKLRCVFEMPNE 135
Query: 130 SPVLS--------PINGVLKQGPTYESSSLKDPVFSKFEILTPPHTVSKN 171
+ L+ P+N + GP L PH+VS N
Sbjct: 136 NDKLNDMEPSKAVPLNASKQDGP-----------------LPKPHSVSLN 168
>sp|Q9Z270|VAPA_RAT Vesicle-associated membrane protein-associated protein A OS=Rattus
norvegicus GN=Vapa PE=1 SV=3
Length = 249
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 29/170 (17%)
Query: 10 PKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVT 69
P +LKF + +++L N + V FKVKTT+P++YCVRPN G+I P S +V
Sbjct: 20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM 79
Query: 70 MQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPPN 129
+Q P+ K KF++Q+ P +D + D+ + ++KLR + P
Sbjct: 80 LQPFDYD-PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDE---LMDSKLRCVFEMPNE 135
Query: 130 SPVLS--------PINGVLKQGPTYESSSLKDPVFSKFEILTPPHTVSKN 171
+ L+ P+N + GP L PH+VS N
Sbjct: 136 NDKLNDMEPSKAVPLNASKQDGP-----------------LPKPHSVSLN 168
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2
Length = 319
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 15 FIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQA 74
F L + C + L N + + FKVKTT+PK+YCVRPN G I S V +Q
Sbjct: 11 FPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVILQPLD 70
Query: 75 VAP-PDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVIL 124
P P C+DKFL+QST + DI A ++ + I E K+R +
Sbjct: 71 HEPAPGTKCRDKFLVQSTELKPELQGMDI-ADIWTQVSKANISERKIRCVY 120
>sp|Q6Q595|SCS22_YEAST Vesicle-associated membrane protein-associated protein SCS22
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SCS22 PE=1 SV=2
Length = 175
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 25/108 (23%)
Query: 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGII------- 58
+ I P++L F L KQS+ ++L N+ V FKV+T++P KYCVRPNV II
Sbjct: 1 MRIVPEKLVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESVN 60
Query: 59 -------LPKSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTD 99
LPKST D + + +DKFLI + +P +
Sbjct: 61 VQIVFLGLPKSTADDEMDQK-----------RDKFLIVTLPIPAAYQN 97
>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42
PE=1 SV=1
Length = 295
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 3 KQLLEIQPKE-LKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPK 61
K+ L++ P E L F +E KQ ++++ N + +VAFK +TT+PK +RP I+ P
Sbjct: 105 KRRLKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPG 164
Query: 62 STCDFNVTMQAQAVAPP-------DMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRY 114
T + + V PP D + KF I S V D +F +
Sbjct: 165 ETI---IATVFKFVEPPENNEKPMDQRSRVKFKIMSLKV---KGPMDYVPELFDEQKDDV 218
Query: 115 IQENKLRVILISP 127
+E LRVI + P
Sbjct: 219 SKEQILRVIFLDP 231
>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2
PE=1 SV=2
Length = 518
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 5 LLEIQPKELKFIFELKK-QSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKST 63
LL I P E + ++ + + LTN T + VAFKV+TT+P+KY V+P+ P ++
Sbjct: 327 LLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGAS 386
Query: 64 CDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRY-IQENKLRV 122
D V+ + +D+FLI + + + S F K+ R + E++LR
Sbjct: 387 IDIIVSPHGGLT----VSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRC 442
Query: 123 ILI--SPPNSPVL 133
+ S PNS +L
Sbjct: 443 HTVESSKPNSLML 455
>sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain-containing protein 2 OS=Homo sapiens GN=MOSPD2
PE=1 SV=1
Length = 518
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 5 LLEIQP-KELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKST 63
LL I P +EL F + + LTN T + VAFKV+TT+P+KY V+P+ P ++
Sbjct: 327 LLHISPAEELYFGSTESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGAS 386
Query: 64 CDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRY-IQENKLRV 122
D V+ + +D+FLI + + + + F K+ R + E++LR
Sbjct: 387 VDIVVSPHGGLT----VSAQDRFLIMAAEMEQSSGTGPAELTQFWKEVPRNKVMEHRLRC 442
Query: 123 ILI--SPPNSPVL 133
+ S PN+ L
Sbjct: 443 HTVESSKPNTLTL 455
>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43
PE=2 SV=1
Length = 287
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 3 KQLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPK 61
K+ L++ P +L F +E KQ ++++ N + +VAFK +TT PK +RP I+ P
Sbjct: 97 KRRLKLDPSAKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPG 156
Query: 62 STCDFNVTMQAQAVAPPD-----MVCKD--KFLIQSTVVPVGTTDEDITASMFAKDDGRY 114
+ + V PP+ M K KF I S + V T D +F +
Sbjct: 157 EEI---IATVFKFVEPPENNEKPMEQKSGVKFKIMSLKMKVPT---DYMPELFEEQKDHV 210
Query: 115 IQENKLRVILISP--PNS 130
+E +RV+ + P PNS
Sbjct: 211 SEEQVMRVVFLDPENPNS 228
>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3
Length = 4684
Score = 38.5 bits (88), Expect = 0.11, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 204 KSAKDTEVKLRKDVVDSQELTPTVNADLNPRKDVADGEELKSSKDTELKPREDIIRGEEL 263
+ AK+ + +++++VV +E V+A R + ++L+ S + E++ + E
Sbjct: 1525 REAKELQQRMQEEVVRREE--AAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAER 1582
Query: 264 TSTKDAE--LELRKDVISSEELTSTEDPELKPRKDEANSVELKEEKVIELNLPKEVVNGE 321
+ + E +R + ++E + EL+ + A E ++ + E +
Sbjct: 1583 SRLRIEEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQD 1642
Query: 322 ELQPKKDAELKLMKELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEV 373
E Q K+ AE++L ++ +A A E+ ++ +EE++ + E + +L +AEV
Sbjct: 1643 ESQRKRQAEVELASRVKAEAEAAREKQRALQALEELRLQAEEAERRLRQAEV 1694
>sp|A8E283|VPN7_BPPHE Tail fiber protein OS=Enterococcus phage phiEF24C GN=EFP_031 PE=1
SV=1
Length = 1825
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 19/150 (12%)
Query: 268 DAELELRKDVISSEELTSTEDPELKPRKDEANSVELKEEKVIELNLPKEVV-NGEELQPK 326
D +LE+RKD I S+ T D +L D+ N + + ++ E N E++ NG E Q
Sbjct: 303 DMDLEVRKDGIYSQGKLFTADVDLSDVYDKLNGLSI---QIKETNGQLEIIANGVEEQNG 359
Query: 327 KDAELKLMKELEFKAGKAAEELEL--VKDI-----EEMKSKLNELQSKLSEAEVTISKLT 379
K +EL E+ AGK ++ V+D+ +M + + Q +A I+ ++
Sbjct: 360 KISELS--TEITIVAGKVESKVTKTEVQDMIDSSFVDMSDAIKKAQEDADKANKVIADMS 417
Query: 380 EENRLGIQEKKILKGELDTLRSKSVVKNVH 409
+NRL EK +D L+ ++KN +
Sbjct: 418 SDNRLTPSEK------IDLLKEWDIIKNEY 441
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 21/188 (11%)
Query: 254 REDIIRGEEL----TSTKDAELELRKDVISSEELTSTEDP---------ELKPRKDEANS 300
RE I+ L TS+ + R VI S + T + E + K EA+
Sbjct: 150 RESIMGNTSLEYASTSSGQDSVRSRGSVIPSRQFTISRGNGNVYQLAVFEAEKSKKEASL 209
Query: 301 VELKEEKVI-ELNLPKEVVNGEELQPKKDAELKLMKELEFKAGKAAEELELVKDIEEMKS 359
K ++V+ E N + + G+E + ELK KE E + K E+LE ++ I E +
Sbjct: 210 EAFKHQEVVKEKN--EAIKRGKEWESAYLEELKQRKETEMELKKVREKLEKMRYISENRI 267
Query: 360 K-----LNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHVGFPL 414
+ +LQ K + A + K EE L I+ + I E++ LR + + H P
Sbjct: 268 TESYMLVQKLQDKYNLATKVLRKAKEERDLLIKGRDIAIIEVEELRKEVSRSDEHREAPQ 327
Query: 415 LFVCMVAL 422
F+C ++L
Sbjct: 328 YFICPISL 335
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,861,732
Number of Sequences: 539616
Number of extensions: 6915569
Number of successful extensions: 29653
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 1735
Number of HSP's that attempted gapping in prelim test: 25597
Number of HSP's gapped (non-prelim): 4526
length of query: 432
length of database: 191,569,459
effective HSP length: 120
effective length of query: 312
effective length of database: 126,815,539
effective search space: 39566448168
effective search space used: 39566448168
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)