Query 041775
Match_columns 432
No_of_seqs 149 out of 648
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 10:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 99.9 1.1E-24 2.5E-29 206.2 12.8 144 6-151 3-148 (242)
2 KOG0439 VAMP-associated protei 99.9 4.4E-24 9.6E-29 197.9 14.5 127 3-131 6-135 (218)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 1E-21 2.2E-26 162.1 12.9 105 6-111 2-108 (109)
4 PF14874 PapD-like: Flagellar- 98.4 5.5E-06 1.2E-10 68.3 11.2 70 4-73 2-74 (102)
5 PRK10884 SH3 domain-containing 96.5 0.0068 1.5E-07 58.2 6.9 75 357-431 116-191 (206)
6 PF00345 PapD_N: Pili and flag 96.4 0.043 9.3E-07 47.0 10.3 83 6-95 2-93 (122)
7 PRK09918 putative fimbrial cha 91.5 1.7 3.6E-05 42.2 10.1 83 6-95 26-113 (230)
8 PRK09926 putative chaperone pr 90.7 2.1 4.5E-05 42.0 10.0 86 5-95 26-121 (246)
9 PRK15249 fimbrial chaperone pr 90.6 2 4.4E-05 42.4 9.9 85 6-95 30-125 (253)
10 PF14646 MYCBPAP: MYCBP-associ 90.6 1.2 2.6E-05 46.6 8.7 75 12-90 238-325 (426)
11 PRK04406 hypothetical protein; 89.0 0.99 2.1E-05 37.3 5.3 53 352-404 4-56 (75)
12 PRK15246 fimbrial assembly cha 88.3 4.3 9.4E-05 39.8 10.1 85 6-95 12-106 (233)
13 PRK11385 putativi pili assembl 88.1 3.9 8.5E-05 40.2 9.8 85 6-95 28-124 (236)
14 PRK04325 hypothetical protein; 88.0 0.96 2.1E-05 37.1 4.7 54 352-405 2-55 (74)
15 PRK15295 fimbrial assembly cha 86.9 6.1 0.00013 38.4 10.2 84 6-95 21-111 (226)
16 PF04102 SlyX: SlyX; InterPro 86.6 1.5 3.3E-05 35.3 5.0 50 357-406 2-51 (69)
17 PRK15211 fimbrial chaperone pr 86.5 6.2 0.00013 38.6 10.1 84 6-95 24-113 (229)
18 PRK15299 fimbrial chaperone pr 86.1 7.2 0.00016 37.8 10.2 84 6-95 24-115 (227)
19 PF13870 DUF4201: Domain of un 86.0 8.1 0.00017 35.6 10.1 84 326-415 60-143 (177)
20 PRK15290 lfpB fimbrial chapero 84.4 8.7 0.00019 38.0 10.1 85 6-95 39-131 (243)
21 PRK00846 hypothetical protein; 84.4 2.1 4.6E-05 35.9 4.9 49 355-403 9-57 (77)
22 PF07610 DUF1573: Protein of u 83.9 4.2 9E-05 30.0 5.9 43 27-70 2-45 (45)
23 PF14197 Cep57_CLD_2: Centroso 83.8 2.7 5.9E-05 34.2 5.3 50 353-402 6-62 (69)
24 PRK02119 hypothetical protein; 83.7 2.6 5.7E-05 34.6 5.1 50 354-403 4-53 (73)
25 PRK15192 fimbrial chaperone Bc 82.9 9.6 0.00021 37.5 9.7 82 6-95 24-119 (234)
26 PRK15208 long polar fimbrial c 82.9 11 0.00023 36.7 9.9 85 5-95 22-112 (228)
27 PF11614 FixG_C: IG-like fold 82.6 5.4 0.00012 34.1 7.0 51 24-74 34-86 (118)
28 COG3121 FimC P pilus assembly 81.0 21 0.00045 34.9 11.2 85 6-96 29-120 (235)
29 PRK15188 fimbrial chaperone pr 80.4 16 0.00034 36.0 10.0 84 6-95 29-118 (228)
30 PRK02793 phi X174 lysis protei 79.8 3.9 8.5E-05 33.4 4.8 50 356-405 5-54 (72)
31 PRK15254 fimbrial chaperone pr 79.4 19 0.00041 35.6 10.3 85 6-95 18-110 (239)
32 PRK00295 hypothetical protein; 79.3 4 8.6E-05 33.0 4.7 49 357-405 3-51 (68)
33 PRK15195 fimbrial chaperone pr 78.7 20 0.00043 35.0 10.2 84 6-95 27-116 (229)
34 PRK00736 hypothetical protein; 78.6 4.3 9.3E-05 32.9 4.7 47 358-404 4-50 (68)
35 PRK15218 fimbrial chaperone pr 75.6 41 0.00088 33.0 11.4 83 7-95 21-113 (226)
36 PF05957 DUF883: Bacterial pro 75.2 19 0.0004 30.1 7.8 19 413-431 73-91 (94)
37 PRK15224 pili assembly chapero 72.8 49 0.0011 32.8 11.2 81 7-95 31-118 (237)
38 PF03962 Mnd1: Mnd1 family; I 72.0 9.7 0.00021 36.2 6.0 57 345-402 69-125 (188)
39 PF06280 DUF1034: Fn3-like dom 71.6 10 0.00022 32.2 5.5 55 20-74 7-82 (112)
40 PF07798 DUF1640: Protein of u 70.7 24 0.00052 32.8 8.2 13 418-430 161-173 (177)
41 PRK15233 putative fimbrial cha 69.8 44 0.00096 33.4 10.2 80 8-95 44-130 (246)
42 PRK15274 putative periplasmic 68.8 73 0.0016 32.0 11.5 84 7-95 29-120 (257)
43 PRK15253 putative fimbrial ass 68.2 76 0.0016 31.5 11.4 83 7-95 36-128 (242)
44 PF05546 She9_MDM33: She9 / Md 66.4 21 0.00044 35.2 7.0 69 336-404 16-85 (207)
45 PF08912 Rho_Binding: Rho Bind 66.3 14 0.0003 30.6 5.0 47 350-396 1-51 (69)
46 PF06548 Kinesin-related: Kine 65.9 16 0.00034 39.7 6.6 42 362-403 430-471 (488)
47 PF10779 XhlA: Haemolysin XhlA 65.6 16 0.00034 29.4 5.1 46 355-400 2-47 (71)
48 PRK10132 hypothetical protein; 64.2 32 0.0007 30.4 7.2 21 411-431 84-104 (108)
49 PRK15285 putative fimbrial cha 62.5 1.2E+02 0.0026 30.3 11.7 83 8-95 29-119 (250)
50 TIGR03079 CH4_NH3mon_ox_B meth 60.0 36 0.00078 36.3 7.8 55 20-74 281-356 (399)
51 COG3883 Uncharacterized protei 59.6 20 0.00044 36.3 5.8 63 340-402 33-95 (265)
52 TIGR01149 mtrG N5-methyltetrah 58.6 23 0.0005 29.5 4.9 25 351-375 11-35 (70)
53 PF11559 ADIP: Afadin- and alp 58.3 36 0.00077 30.6 6.6 57 345-401 66-122 (151)
54 PF12325 TMF_TATA_bd: TATA ele 57.9 36 0.00078 30.6 6.5 57 346-402 24-83 (120)
55 PF03962 Mnd1: Mnd1 family; I 57.6 28 0.00061 33.1 6.1 59 345-404 62-120 (188)
56 PF10633 NPCBM_assoc: NPCBM-as 57.0 20 0.00043 28.5 4.3 56 20-75 4-63 (78)
57 PRK10884 SH3 domain-containing 54.6 87 0.0019 30.5 9.0 43 352-394 125-167 (206)
58 PF10473 CENP-F_leu_zip: Leuci 54.2 42 0.00092 31.0 6.5 30 371-400 50-79 (140)
59 PF10498 IFT57: Intra-flagella 54.0 34 0.00074 35.8 6.6 103 306-415 229-331 (359)
60 PLN03188 kinesin-12 family pro 54.0 27 0.00058 42.2 6.3 41 363-403 1201-1241(1320)
61 smart00809 Alpha_adaptinC2 Ada 53.9 88 0.0019 25.7 7.8 54 20-73 17-74 (104)
62 PF08826 DMPK_coil: DMPK coile 52.6 45 0.00099 26.9 5.6 44 351-401 17-60 (61)
63 PF12777 MT: Microtubule-bindi 52.3 22 0.00048 36.4 4.8 48 353-400 229-276 (344)
64 PRK10404 hypothetical protein; 50.2 58 0.0013 28.4 6.4 20 412-431 79-98 (101)
65 PF00927 Transglut_C: Transglu 49.9 62 0.0014 27.1 6.4 57 19-75 13-79 (107)
66 COG2433 Uncharacterized conser 49.6 57 0.0012 36.9 7.6 76 343-418 434-526 (652)
67 PRK11637 AmiB activator; Provi 48.9 43 0.00093 35.0 6.4 42 354-395 77-118 (428)
68 PF12690 BsuPI: Intracellular 48.6 65 0.0014 26.8 6.2 20 24-43 3-22 (82)
69 PF06156 DUF972: Protein of un 48.3 64 0.0014 28.4 6.4 53 349-401 5-57 (107)
70 PF05506 DUF756: Domain of unk 47.9 67 0.0015 26.3 6.2 45 24-71 21-66 (89)
71 PF03904 DUF334: Domain of unk 47.0 44 0.00094 33.4 5.7 28 371-401 118-145 (230)
72 PRK11637 AmiB activator; Provi 46.7 49 0.0011 34.6 6.4 52 348-399 78-129 (428)
73 PF06156 DUF972: Protein of un 46.3 43 0.00092 29.5 5.0 52 353-404 2-53 (107)
74 PF02883 Alpha_adaptinC2: Adap 45.8 80 0.0017 26.5 6.5 60 13-72 13-79 (115)
75 PF07926 TPR_MLP1_2: TPR/MLP1/ 45.8 63 0.0014 28.7 6.1 52 353-404 60-115 (132)
76 PF13234 rRNA_proc-arch: rRNA- 45.8 24 0.00053 34.4 3.8 51 353-403 215-265 (268)
77 PF04728 LPP: Lipoprotein leuc 45.2 72 0.0016 25.5 5.6 43 346-388 4-46 (56)
78 PF15188 CCDC-167: Coiled-coil 44.1 34 0.00073 29.3 3.9 59 350-409 3-71 (85)
79 PF05008 V-SNARE: Vesicle tran 43.8 60 0.0013 25.9 5.1 47 355-401 21-68 (79)
80 PF06030 DUF916: Bacterial pro 43.0 2.3E+02 0.005 25.1 9.1 30 13-42 19-48 (121)
81 KOG2176 Exocyst complex, subun 42.7 56 0.0012 37.8 6.4 71 320-391 53-127 (800)
82 PRK02201 putative inner membra 42.1 38 0.00082 35.6 4.7 71 349-424 150-227 (357)
83 PF08317 Spc7: Spc7 kinetochor 42.0 1.3E+02 0.0029 30.6 8.5 14 387-400 276-289 (325)
84 PRK15308 putative fimbrial pro 41.4 3.2E+02 0.0069 27.2 10.7 85 4-96 16-118 (234)
85 TIGR03185 DNA_S_dndD DNA sulfu 40.9 70 0.0015 35.4 6.7 49 352-400 421-469 (650)
86 PF04156 IncA: IncA protein; 40.8 1.2E+02 0.0026 27.9 7.3 52 347-398 132-183 (191)
87 PRK02463 OxaA-like protein pre 40.7 35 0.00076 35.0 4.1 37 386-422 113-157 (307)
88 PRK13169 DNA replication intia 40.3 97 0.0021 27.6 6.3 53 349-401 5-57 (110)
89 PF10473 CENP-F_leu_zip: Leuci 40.1 88 0.0019 28.9 6.2 56 345-400 38-93 (140)
90 PF06005 DUF904: Protein of un 39.8 54 0.0012 27.0 4.4 13 388-400 40-52 (72)
91 TIGR03185 DNA_S_dndD DNA sulfu 39.1 67 0.0014 35.6 6.3 70 349-418 220-299 (650)
92 PF04508 Pox_A_type_inc: Viral 39.1 28 0.0006 23.4 2.1 20 353-372 2-21 (23)
93 COG5185 HEC1 Protein involved 39.0 95 0.0021 34.4 7.1 57 344-400 263-322 (622)
94 KOG0978 E3 ubiquitin ligase in 37.9 1.2E+02 0.0026 34.9 7.9 56 349-404 563-618 (698)
95 PF09738 DUF2051: Double stran 37.8 51 0.0011 33.9 4.8 49 352-400 105-160 (302)
96 smart00787 Spc7 Spc7 kinetocho 37.8 1.4E+02 0.003 30.8 7.9 51 351-401 224-285 (312)
97 KOG0995 Centromere-associated 37.7 62 0.0013 36.2 5.6 55 349-403 270-324 (581)
98 PF07160 DUF1395: Protein of u 37.3 1.4E+02 0.0029 29.8 7.5 66 329-394 6-71 (243)
99 PF11611 DUF4352: Domain of un 35.7 1.4E+02 0.003 24.8 6.4 53 21-73 36-102 (123)
100 PF02753 PapD_C: Pili assembly 35.2 36 0.00077 26.4 2.5 43 27-70 1-45 (68)
101 KOG3156 Uncharacterized membra 34.3 1.4E+02 0.003 29.8 6.9 41 390-431 177-217 (220)
102 PF07106 TBPIP: Tat binding pr 33.9 1.3E+02 0.0027 27.6 6.3 16 386-401 122-137 (169)
103 PRK13169 DNA replication intia 33.7 86 0.0019 27.9 4.9 50 355-404 4-53 (110)
104 PRK09413 IS2 repressor TnpA; R 32.9 51 0.0011 28.7 3.4 36 368-403 73-108 (121)
105 COG4575 ElaB Uncharacterized c 32.6 2E+02 0.0044 25.7 7.0 20 412-431 82-101 (104)
106 PF08647 BRE1: BRE1 E3 ubiquit 32.4 1.4E+02 0.0031 25.4 5.9 53 351-403 16-68 (96)
107 PF12761 End3: Actin cytoskele 32.0 60 0.0013 31.7 4.0 44 353-399 95-140 (195)
108 PF04744 Monooxygenase_B: Mono 31.7 2.2E+02 0.0048 30.5 8.3 66 6-73 249-336 (381)
109 PRK03992 proteasome-activating 31.1 76 0.0017 32.9 4.9 48 354-401 3-50 (389)
110 PRK01315 putative inner membra 30.9 56 0.0012 34.0 3.8 35 389-424 89-130 (329)
111 PF13815 Dzip-like_N: Iguana/D 30.9 79 0.0017 27.7 4.3 40 357-396 78-117 (118)
112 PF15397 DUF4618: Domain of un 30.7 1.6E+02 0.0035 29.9 6.9 76 341-424 52-127 (258)
113 PF07795 DUF1635: Protein of u 30.7 89 0.0019 31.0 5.0 48 353-400 2-60 (214)
114 PF13851 GAS: Growth-arrest sp 30.5 1.8E+02 0.0039 27.9 7.0 48 352-399 27-81 (201)
115 PF04111 APG6: Autophagy prote 30.4 1E+02 0.0022 31.5 5.6 44 352-395 64-107 (314)
116 PF13870 DUF4201: Domain of un 30.1 91 0.002 28.7 4.7 51 349-399 88-138 (177)
117 PF12777 MT: Microtubule-bindi 29.7 92 0.002 31.9 5.1 52 349-400 260-311 (344)
118 PF06810 Phage_GP20: Phage min 29.3 88 0.0019 29.0 4.5 27 354-380 22-48 (155)
119 PF15456 Uds1: Up-regulated Du 29.0 1.9E+02 0.0041 26.1 6.4 58 345-403 29-104 (124)
120 PF06005 DUF904: Protein of un 28.7 1.6E+02 0.0035 24.3 5.4 44 350-400 16-59 (72)
121 PRK04778 septation ring format 28.6 3.7E+02 0.008 29.6 9.7 87 338-425 369-455 (569)
122 PF11166 DUF2951: Protein of u 28.0 2.3E+02 0.0049 25.1 6.4 77 346-431 12-88 (98)
123 KOG2685 Cystoskeletal protein 28.0 1.3E+02 0.0028 32.6 6.0 38 343-380 342-379 (421)
124 PF00957 Synaptobrevin: Synapt 28.0 2.2E+02 0.0048 23.2 6.2 57 350-406 8-64 (89)
125 COG3879 Uncharacterized protei 28.0 1.5E+02 0.0033 30.0 6.1 51 348-401 53-103 (247)
126 PF13851 GAS: Growth-arrest sp 27.6 2.4E+02 0.0053 27.1 7.3 53 351-403 78-130 (201)
127 PF03173 CHB_HEX: Putative car 27.6 57 0.0012 30.7 2.9 34 39-72 69-104 (164)
128 PF06657 Cep57_MT_bd: Centroso 27.5 1.1E+02 0.0024 25.5 4.3 56 345-409 17-72 (79)
129 PF02687 FtsX: FtsX-like perme 27.3 59 0.0013 26.2 2.7 39 392-430 26-64 (121)
130 PF00038 Filament: Intermediat 27.2 1.9E+02 0.0041 28.5 6.7 50 351-400 81-137 (312)
131 TIGR02745 ccoG_rdxA_fixG cytoc 26.3 3.2E+02 0.0069 29.5 8.6 67 22-90 347-415 (434)
132 TIGR01000 bacteriocin_acc bact 26.2 2.5E+02 0.0055 29.7 7.7 53 348-400 239-304 (457)
133 PF04871 Uso1_p115_C: Uso1 / p 26.2 3.6E+02 0.0077 24.6 7.7 50 350-399 39-89 (136)
134 PF00769 ERM: Ezrin/radixin/mo 26.1 81 0.0017 31.2 3.8 40 362-401 78-117 (246)
135 PF10186 Atg14: UV radiation r 26.1 2.9E+02 0.0062 26.5 7.6 22 352-373 84-105 (302)
136 PF04156 IncA: IncA protein; 25.9 3.9E+02 0.0084 24.5 8.1 28 352-379 123-150 (191)
137 PF08317 Spc7: Spc7 kinetochor 25.8 1.9E+02 0.0041 29.5 6.5 51 352-402 216-266 (325)
138 PF13473 Cupredoxin_1: Cupredo 25.7 3.6E+02 0.0078 22.4 7.2 56 7-74 31-87 (104)
139 PRK01026 tetrahydromethanopter 25.4 77 0.0017 26.9 3.0 25 351-375 14-38 (77)
140 PF08700 Vps51: Vps51/Vps67; 25.3 1.9E+02 0.0041 23.1 5.3 41 340-380 46-86 (87)
141 smart00787 Spc7 Spc7 kinetocho 25.2 2.1E+02 0.0046 29.4 6.8 51 339-390 206-256 (312)
142 KOG0243 Kinesin-like protein [ 25.1 1.4E+02 0.003 35.8 6.0 72 329-401 411-490 (1041)
143 PF10211 Ax_dynein_light: Axon 24.5 1.8E+02 0.0039 27.7 5.7 54 349-404 124-180 (189)
144 PF07246 Phlebovirus_NSM: Phle 24.4 2.2E+02 0.0048 29.2 6.5 40 366-405 202-241 (264)
145 PF03961 DUF342: Protein of un 24.3 1.6E+02 0.0035 31.1 6.0 27 374-400 376-402 (451)
146 PRK13729 conjugal transfer pil 24.2 95 0.0021 34.1 4.2 21 359-379 69-89 (475)
147 KOG0250 DNA repair protein RAD 24.2 2.4E+02 0.0051 34.1 7.6 57 326-384 320-376 (1074)
148 PF05064 Nsp1_C: Nsp1-like C-t 24.1 92 0.002 27.4 3.5 63 339-401 23-85 (116)
149 PRK11546 zraP zinc resistance 23.9 2.4E+02 0.0053 26.3 6.2 62 321-401 42-110 (143)
150 PF12325 TMF_TATA_bd: TATA ele 23.8 1.8E+02 0.0039 26.2 5.2 46 354-399 18-63 (120)
151 PF07798 DUF1640: Protein of u 23.5 2.9E+02 0.0063 25.7 6.8 14 412-425 159-172 (177)
152 KOG0977 Nuclear envelope prote 23.5 2.6E+02 0.0056 31.4 7.4 50 352-401 141-190 (546)
153 PF02994 Transposase_22: L1 tr 23.0 1.2E+02 0.0026 31.7 4.6 57 350-414 142-200 (370)
154 PF04210 MtrG: Tetrahydrometha 22.6 95 0.0021 26.0 3.0 25 351-375 11-35 (70)
155 PF10146 zf-C4H2: Zinc finger- 22.5 2.9E+02 0.0063 27.4 6.9 16 372-387 66-81 (230)
156 COG5407 SEC63 Preprotein trans 22.5 48 0.001 36.6 1.6 21 411-431 192-212 (610)
157 PHA02562 46 endonuclease subun 22.3 4.7E+02 0.01 27.8 8.9 12 312-323 286-297 (562)
158 COG4026 Uncharacterized protei 22.3 2E+02 0.0042 29.3 5.6 47 350-396 154-200 (290)
159 PF13935 Ead_Ea22: Ead/Ea22-li 22.3 3.7E+02 0.008 24.3 7.0 24 352-375 90-113 (139)
160 TIGR03017 EpsF chain length de 22.1 8.4E+02 0.018 25.2 10.5 17 414-430 397-413 (444)
161 PF11559 ADIP: Afadin- and alp 22.1 4E+02 0.0086 23.9 7.2 41 345-385 59-99 (151)
162 PTZ00454 26S protease regulato 21.9 1.5E+02 0.0032 31.3 5.0 42 360-401 23-64 (398)
163 PF09726 Macoilin: Transmembra 21.8 1.7E+02 0.0036 33.5 5.7 53 349-401 422-474 (697)
164 PF07106 TBPIP: Tat binding pr 21.8 2.1E+02 0.0046 26.2 5.5 16 385-400 143-158 (169)
165 PF06148 COG2: COG (conserved 21.5 1.2E+02 0.0027 26.6 3.8 51 346-396 70-120 (133)
166 KOG0996 Structural maintenance 21.3 2.9E+02 0.0063 33.8 7.5 35 367-401 557-591 (1293)
167 PRK02944 OxaA-like protein pre 21.3 1.2E+02 0.0027 30.1 4.1 38 386-424 107-151 (255)
168 PF00038 Filament: Intermediat 21.2 2.1E+02 0.0046 28.2 5.8 39 364-402 52-90 (312)
169 PF08172 CASP_C: CASP C termin 21.2 70 0.0015 31.9 2.4 27 355-381 2-28 (248)
170 KOG1029 Endocytic adaptor prot 21.0 2.8E+02 0.006 32.9 7.1 32 371-402 470-501 (1118)
171 PF05753 TRAP_beta: Translocon 21.0 4.3E+02 0.0093 25.2 7.5 54 20-74 37-99 (181)
172 PRK09973 putative outer membra 20.9 2.1E+02 0.0045 24.7 4.8 46 345-390 24-69 (85)
173 PF13544 N_methyl_2: Type IV p 20.8 79 0.0017 21.9 1.9 21 406-426 10-30 (31)
174 PRK06800 fliH flagellar assemb 20.6 1.5E+02 0.0033 29.3 4.4 71 312-391 7-77 (228)
175 PF02960 K1: K1 glycoprotein; 20.5 71 0.0015 29.1 2.0 17 414-430 71-87 (130)
176 TIGR03007 pepcterm_ChnLen poly 20.5 5.4E+02 0.012 27.2 8.9 16 415-430 415-430 (498)
177 PF06705 SF-assemblin: SF-asse 20.4 5.7E+02 0.012 24.9 8.4 66 336-401 69-135 (247)
178 COG4026 Uncharacterized protei 20.0 2.8E+02 0.0062 28.2 6.2 53 350-402 147-199 (290)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.92 E-value=1.1e-24 Score=206.24 Aligned_cols=144 Identities=34% Similarity=0.486 Sum_probs=116.6
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCC-CCCCCCc
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAP-PDMVCKD 84 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P-~D~q~kD 84 (432)
++++|. +.|+.++....++.+-+.|++..+|+||||||+|+.||||||.|.|.|++++.|+|++|++++.| +|++|+|
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 556665 45677899999999999999999999999999999999999999999999999999999999877 4999999
Q ss_pred eEEEEEEEcCCCCCchhhHHhhhcccCCCcceEEEeEEEEeCCCC-CCCccCCCCCCCCCCcccccCC
Q 041775 85 KFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPPN-SPVLSPINGVLKQGPTYESSSL 151 (432)
Q Consensus 85 KFLVQS~~Vp~gttd~Di~~e~WKk~sk~~I~E~KLrVvfv~p~~-~~~~~~~ng~~~~~~~~~~~~~ 151 (432)
|||||++..+...+-.|+ .++|+..++.-|++.||+|+|..... +.+.-..+|-..+....+.|.+
T Consensus 82 KFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvyse~~is~nvh~~~e~~~a~~~~v~~pt~ 148 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYSEEEISKNVHECSEDRGAAVLLVEMPTL 148 (242)
T ss_pred eeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEeeccccCCCcccccccchhhheeecccee
Confidence 999999999876555555 69999999888999999999984332 2222233444444444444433
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.4e-24 Score=197.94 Aligned_cols=127 Identities=44% Similarity=0.665 Sum_probs=115.0
Q ss_pred CCceEEec-CeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCCCCCC
Q 041775 3 KQLLEIQP-KELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMV 81 (432)
Q Consensus 3 s~LLsIdP-sEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~q 81 (432)
..++.|.| .+|+|.++.+.+.++.|+|+|+++.++|||||||+|++||||||.|+|.||++++|.|.+|+....|.|++
T Consensus 6 ~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~d~~ 85 (218)
T KOG0439|consen 6 ESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPPDFK 85 (218)
T ss_pred cCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCchhhc
Confidence 47899999 69999999998899999999999999999999999999999999999999999999999999877888999
Q ss_pred CCceEEEEEEEcCCCCCchhhHHhhhcccC--CCcceEEEeEEEEeCCCCCC
Q 041775 82 CKDKFLIQSTVVPVGTTDEDITASMFAKDD--GRYIQENKLRVILISPPNSP 131 (432)
Q Consensus 82 ~kDKFLVQS~~Vp~gttd~Di~~e~WKk~s--k~~I~E~KLrVvfv~p~~~~ 131 (432)
|+|||+||++.++.+. .....++|+... +..+.+.+++|.|+.+..+.
T Consensus 86 ~r~kF~v~~~~~~~~~--~~~~~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~ 135 (218)
T KOG0439|consen 86 SRHKFLIQSLKAPPPT--TRDVVDLWKFQKETPKESFETKLRVVFVAPTETD 135 (218)
T ss_pred ccceEEEEEEecCCcc--ccchhhhccccccccccccceeeEEEeeCCCCCc
Confidence 9999999999998762 223467898876 88899999999999887664
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.87 E-value=1e-21 Score=162.05 Aligned_cols=105 Identities=38% Similarity=0.623 Sum_probs=85.8
Q ss_pred eEEecC-eeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCCCCCCCCc
Q 041775 6 LEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKD 84 (432)
Q Consensus 6 LsIdPs-EL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~q~kD 84 (432)
|.|+|. .|.|.++.++..++.|+|+|+++++||||||||+|.+|+|+|+.|+|.||+++.|.|++++....+.+ ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 689997 89999999999999999999999999999999999999999999999999999999999998765543 2399
Q ss_pred eEEEEEEEcCCCCCc-hhhHHhhhcccC
Q 041775 85 KFLIQSTVVPVGTTD-EDITASMFAKDD 111 (432)
Q Consensus 85 KFLVQS~~Vp~gttd-~Di~~e~WKk~s 111 (432)
||+|+++.++++..+ .+....+|++..
T Consensus 81 kf~I~~~~~~~~~~~~~~~~~~~~~~~~ 108 (109)
T PF00635_consen 81 KFLIQSIVVPDNATDPKKDFKQIWKNGK 108 (109)
T ss_dssp EEEEEEEEE-TT-SSSHHHHHCCHHHSS
T ss_pred EEEEEEEEcCCCccchhhhHHHHHhccC
Confidence 999999999876543 355678888653
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.37 E-value=5.5e-06 Score=68.30 Aligned_cols=70 Identities=29% Similarity=0.459 Sum_probs=61.4
Q ss_pred CceEEecCeeEEeec-CCCeeeEEEEEEcCCCCeEEEEEeeCC--CCceeecCCceeecCCCeEEEEEEeccC
Q 041775 4 QLLEIQPKELKFIFE-LKKQSSCSVRLTNNTHHYVAFKVKTTS--PKKYCVRPNVGIILPKSTCDFNVTMQAQ 73 (432)
Q Consensus 4 ~LLsIdPsEL~F~~p-~~kq~s~tLtLtN~Sd~~VAFKVKTTS--PkrY~VRPn~GII~PgeSv~I~VTLqp~ 73 (432)
+.|.++|.+|.|-.- .+...+..|+|+|.+..+..|+|+.-. ...|.|.|..|+|.||.+..+.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 468999999999874 466778999999999999999998643 5689999999999999999999999965
No 5
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.51 E-value=0.0068 Score=58.25 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=52.8
Q ss_pred HHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhccccccccc-CCcchhHHHHHHHHHHhhhhc
Q 041775 357 MKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHV-GFPLLFVCMVALISFVLGRLI 431 (432)
Q Consensus 357 l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~k~~~~-GFpllfv~~vali~~~~g~~~ 431 (432)
.+.....|+.++.+++..|..|+++++.-.+|-..+|.|++.|+.+........ ===|+|=..||++|+++|.++
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 344555567778888899999999999888888888888888766544321110 001566678899999999874
No 6
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=96.35 E-value=0.043 Score=46.96 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=61.0
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCC----C-----CceeecCCceeecCCCeEEEEEEeccCccC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTS----P-----KKYCVRPNVGIILPKSTCDFNVTMQAQAVA 76 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTS----P-----krY~VRPn~GII~PgeSv~I~VTLqp~~~~ 76 (432)
|.|+|..+.|.. +.....++|+|.++.++.+.++... + ..|.|-|+...|.||++..|.| +... ..
T Consensus 2 i~i~~trii~~~---~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNE---SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEET---TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeC---CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 578888888875 2348899999999999999988664 1 2689999999999999999999 5433 23
Q ss_pred CCCCCCCceEEEEEEEcCC
Q 041775 77 PPDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 77 P~D~q~kDKFLVQS~~Vp~ 95 (432)
+.+ ....|.+....+|.
T Consensus 77 ~~~--~E~~yrl~~~~iP~ 93 (122)
T PF00345_consen 77 PID--RESLYRLSFREIPP 93 (122)
T ss_dssp -SS--S-EEEEEEEEEEES
T ss_pred CCC--ceEEEEEEEEEEec
Confidence 333 23445555555554
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=91.47 E-value=1.7 Score=42.17 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=60.4
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCC-----CceeecCCceeecCCCeEEEEEEeccCccCCCCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSP-----KKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDM 80 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSP-----krY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~ 80 (432)
|.++|..+.|... ....+++|+|.++.++......... .-|.|.|+.-.|+||+...|.|.+... .|.|.
T Consensus 26 v~l~~tRvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~~--lp~dr 100 (230)
T PRK09918 26 MVPETSVVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKSG--SPLNT 100 (230)
T ss_pred EEEccEEEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC--CCCCe
Confidence 5677778888753 3578999999998877766654321 359999999999999999999988752 45442
Q ss_pred CCCceEEEEEEEcCC
Q 041775 81 VCKDKFLIQSTVVPV 95 (432)
Q Consensus 81 q~kDKFLVQS~~Vp~ 95 (432)
..-|.+....+|.
T Consensus 101 --Es~f~l~v~~IP~ 113 (230)
T PRK09918 101 --EHLLRVSFEGVPP 113 (230)
T ss_pred --eEEEEEEEEEcCC
Confidence 2336666666664
No 8
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=90.67 E-value=2.1 Score=41.97 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=62.6
Q ss_pred ceEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCC----------ceeecCCceeecCCCeEEEEEEeccCc
Q 041775 5 LLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPK----------KYCVRPNVGIILPKSTCDFNVTMQAQA 74 (432)
Q Consensus 5 LLsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPk----------rY~VRPn~GII~PgeSv~I~VTLqp~~ 74 (432)
-|.++|..++|... ....+|+|.|.++.++..-.....-+ -|.|-|+.-.|+||+...|.|......
T Consensus 26 ~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~~ 102 (246)
T PRK09926 26 DIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAST 102 (246)
T ss_pred eEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCCC
Confidence 36788888888753 34789999999988877766554211 399999999999999999999987542
Q ss_pred cCCCCCCCCceEEEEEEEcCC
Q 041775 75 VAPPDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 75 ~~P~D~q~kDKFLVQS~~Vp~ 95 (432)
..|.|.. .-|.+....+|+
T Consensus 103 ~lP~DrE--Slf~lnv~eIP~ 121 (246)
T PRK09926 103 ALPKDRE--SVFWFNVLEVPP 121 (246)
T ss_pred CCCCCce--EEEEEEeeecCC
Confidence 3565432 336666666664
No 9
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=90.59 E-value=2 Score=42.35 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=60.1
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCC------C-----CceeecCCceeecCCCeEEEEEEeccCc
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTS------P-----KKYCVRPNVGIILPKSTCDFNVTMQAQA 74 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTS------P-----krY~VRPn~GII~PgeSv~I~VTLqp~~ 74 (432)
|.|+|..++|... ....+|+|.|.++.++.....+.. | .-|.|.|+.--|+||+...|.|......
T Consensus 30 l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~~ 106 (253)
T PRK15249 30 VTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNTK 106 (253)
T ss_pred EEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCCC
Confidence 6788888888753 246899999998887666654322 1 1399999999999999999999987532
Q ss_pred cCCCCCCCCceEEEEEEEcCC
Q 041775 75 VAPPDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 75 ~~P~D~q~kDKFLVQS~~Vp~ 95 (432)
..|.|.. --|.+....+|+
T Consensus 107 ~lP~DRE--Slf~lnv~eIP~ 125 (253)
T PRK15249 107 KLPQDRE--SVFWFNVLQVPP 125 (253)
T ss_pred CCCCCce--EEEEEEeeecCC
Confidence 4565532 235555555664
No 10
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=90.58 E-value=1.2 Score=46.62 Aligned_cols=75 Identities=20% Similarity=0.396 Sum_probs=59.5
Q ss_pred eeEEeecCCCeeeEEEE-EEcCCCCeEEEEEeeCC------------CCceeecCCceeecCCCeEEEEEEeccCccCCC
Q 041775 12 ELKFIFELKKQSSCSVR-LTNNTHHYVAFKVKTTS------------PKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPP 78 (432)
Q Consensus 12 EL~F~~p~~kq~s~tLt-LtN~Sd~~VAFKVKTTS------------PkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~ 78 (432)
.|.|....+......|+ |.|.+..-|-|..+--. ...|......|+|.||++..|.|++++....
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~~G-- 315 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRKVG-- 315 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCCce--
Confidence 68898887777777777 99999999999976433 4578888999999999999999999988531
Q ss_pred CCCCCceEEEEE
Q 041775 79 DMVCKDKFLIQS 90 (432)
Q Consensus 79 D~q~kDKFLVQS 90 (432)
..+..+.+..
T Consensus 316 --if~E~W~L~t 325 (426)
T PF14646_consen 316 --IFKERWELRT 325 (426)
T ss_pred --EEEEEEEEEE
Confidence 2455566555
No 11
>PRK04406 hypothetical protein; Provisional
Probab=88.99 E-value=0.99 Score=37.30 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhccc
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSV 404 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~ 404 (432)
|-+++|..++..||.||.--+.+|..|++.=-.--++-+.|+.+|..|+.+-.
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557899999999999999999999999988888888999999999976553
No 12
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=88.27 E-value=4.3 Score=39.75 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=60.9
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCC------CC----ceeecCCceeecCCCeEEEEEEeccCcc
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTS------PK----KYCVRPNVGIILPKSTCDFNVTMQAQAV 75 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTS------Pk----rY~VRPn~GII~PgeSv~I~VTLqp~~~ 75 (432)
|.|++..++|... ....+|+|.|.++.++.--..... |. -|.|-|+.-.|+|++...+.|.......
T Consensus 12 v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~~ 88 (233)
T PRK15246 12 VNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQQ 88 (233)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCCC
Confidence 6778888888753 357899999999876544443221 11 4999999999999999999999875434
Q ss_pred CCCCCCCCceEEEEEEEcCC
Q 041775 76 APPDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 76 ~P~D~q~kDKFLVQS~~Vp~ 95 (432)
.|.|. .--|-+....+|+
T Consensus 89 LP~DR--ESlf~lnv~~IP~ 106 (233)
T PRK15246 89 LATDR--ESLFWLNIYQIPP 106 (233)
T ss_pred CCCCc--eEEEEEEEEEcCC
Confidence 56553 2347777777775
No 13
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=88.13 E-value=3.9 Score=40.18 Aligned_cols=85 Identities=19% Similarity=0.272 Sum_probs=59.8
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeC------------CCCceeecCCceeecCCCeEEEEEEeccC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTT------------SPKKYCVRPNVGIILPKSTCDFNVTMQAQ 73 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTT------------SPkrY~VRPn~GII~PgeSv~I~VTLqp~ 73 (432)
+.++++.++|... ....+++|.|.++.++.=-.+.. ...-|.|-|+.--|.||+...+.|.....
T Consensus 28 v~l~~TRvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~ 104 (236)
T PRK11385 28 VVVGGTRFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTES 104 (236)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECCC
Confidence 5667777888753 35789999999988644333211 11349999999999999999999998753
Q ss_pred ccCCCCCCCCceEEEEEEEcCC
Q 041775 74 AVAPPDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 74 ~~~P~D~q~kDKFLVQS~~Vp~ 95 (432)
...|.|. ..-|-+....+|+
T Consensus 105 ~~LP~DR--ESlf~lnv~~IPp 124 (236)
T PRK11385 105 DILPVDR--ETLFELSIASVPS 124 (236)
T ss_pred CCCCCCc--eEEEEEEEEecCC
Confidence 3456653 3446666667765
No 14
>PRK04325 hypothetical protein; Provisional
Probab=88.02 E-value=0.96 Score=37.14 Aligned_cols=54 Identities=22% Similarity=0.257 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcccc
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVV 405 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~ 405 (432)
++++.|..++..||.|+.--+.||..|++.=-.--++-+.|+..|..|+.|-..
T Consensus 2 ~~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 2 DAVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999998877777889999999999765533
No 15
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=86.93 E-value=6.1 Score=38.43 Aligned_cols=84 Identities=11% Similarity=0.147 Sum_probs=58.4
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCC-------CCceeecCCceeecCCCeEEEEEEeccCccCCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTS-------PKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPP 78 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTS-------PkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~ 78 (432)
+.+++..+.|... ....+++|.|.++.++.-...... ..-|.|.|+.-.|+||+...|.|..... ..|.
T Consensus 21 i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~LP~ 96 (226)
T PRK15295 21 IVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PLPA 96 (226)
T ss_pred EEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 5677778888763 347899999998876443322211 1249999999999999999999988743 3455
Q ss_pred CCCCCceEEEEEEEcCC
Q 041775 79 DMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 79 D~q~kDKFLVQS~~Vp~ 95 (432)
|. ..-|.+....+|+
T Consensus 97 Dr--Eslf~lnv~~IP~ 111 (226)
T PRK15295 97 DR--ESMYWLNIKGIPS 111 (226)
T ss_pred Cc--eEEEEEEEEEcCC
Confidence 42 2336666666665
No 16
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=86.58 E-value=1.5 Score=35.27 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=43.2
Q ss_pred HHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhccccc
Q 041775 357 MKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVK 406 (432)
Q Consensus 357 l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~k 406 (432)
|..+|..||.||.-.+.+|..|++.=-.--++-+.|++.|..|+.|-..-
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999876553
No 17
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=86.54 E-value=6.2 Score=38.64 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=59.1
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCC------CCceeecCCceeecCCCeEEEEEEeccCccCCCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTS------PKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPD 79 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTS------PkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D 79 (432)
+.++++.++|... ....+++|+|.++.++.-..+... ..-|.|.|+.-.|+||+...|.|...+. ..|.|
T Consensus 24 v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPKD 99 (229)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 5666777887753 347899999999887554433311 1249999999999999999999998753 45655
Q ss_pred CCCCceEEEEEEEcCC
Q 041775 80 MVCKDKFLIQSTVVPV 95 (432)
Q Consensus 80 ~q~kDKFLVQS~~Vp~ 95 (432)
. ..-|-+....+|+
T Consensus 100 R--ESlf~lnv~~IP~ 113 (229)
T PRK15211 100 R--ESLFWLNVQEIPP 113 (229)
T ss_pred c--eEEEEEEEEEcCC
Confidence 3 3446666666665
No 18
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=86.13 E-value=7.2 Score=37.79 Aligned_cols=84 Identities=12% Similarity=0.169 Sum_probs=60.2
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCC--------CCceeecCCceeecCCCeEEEEEEeccCccCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTS--------PKKYCVRPNVGIILPKSTCDFNVTMQAQAVAP 77 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTS--------PkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P 77 (432)
|.++|..+.|... ....+|+|.|.++.++.-...... ..-|.|.|+.-.|.||+...|.|..... ..|
T Consensus 24 i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP 99 (227)
T PRK15299 24 INIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-NLP 99 (227)
T ss_pred EEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-CCC
Confidence 6778888888754 347899999998877665544321 1249999999999999999999987753 345
Q ss_pred CCCCCCceEEEEEEEcCC
Q 041775 78 PDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 78 ~D~q~kDKFLVQS~~Vp~ 95 (432)
.|. ..-|.+....+|+
T Consensus 100 ~Dr--Eslf~lnv~eIP~ 115 (227)
T PRK15299 100 EDR--ESLYWLDIKSIPS 115 (227)
T ss_pred Ccc--eEEEEEEeEecCC
Confidence 543 2346666666765
No 19
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=85.97 E-value=8.1 Score=35.63 Aligned_cols=84 Identities=23% Similarity=0.281 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHHhhhchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcccc
Q 041775 326 KKDAELKLMKELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVV 405 (432)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~ 405 (432)
++.+||.-|+..-... ...+.|+-+....+...+..+...|...+..+.+++++-...-.+|+++......||.++
T Consensus 60 ERn~eL~~Lk~~~~~~--v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~-- 135 (177)
T PF13870_consen 60 ERNKELLKLKKKIGKT--VQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG-- 135 (177)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 5678888888663333 377788889999999999999999999999999999999999999999999999999755
Q ss_pred cccccCCcch
Q 041775 406 KNVHVGFPLL 415 (432)
Q Consensus 406 k~~~~GFpll 415 (432)
...|.|-|
T Consensus 136 --~~~~~P~l 143 (177)
T PF13870_consen 136 --GLLGVPAL 143 (177)
T ss_pred --CCCCCcHH
Confidence 22277766
No 20
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=84.42 E-value=8.7 Score=37.99 Aligned_cols=85 Identities=12% Similarity=0.176 Sum_probs=61.1
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCC-CeEEEEEeeCC---C----CceeecCCceeecCCCeEEEEEEeccCccCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTH-HYVAFKVKTTS---P----KKYCVRPNVGIILPKSTCDFNVTMQAQAVAP 77 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd-~~VAFKVKTTS---P----krY~VRPn~GII~PgeSv~I~VTLqp~~~~P 77 (432)
|.+++..+.|... ....+++|+|.++ .++.--..... . .-|.|-|+.-.|+||+...+.|...+....|
T Consensus 39 v~l~~TRvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 5677778888753 3467999999985 46666655441 1 1399999999999999999999987643456
Q ss_pred CCCCCCceEEEEEEEcCC
Q 041775 78 PDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 78 ~D~q~kDKFLVQS~~Vp~ 95 (432)
.|. ..-|.+....+|+
T Consensus 116 ~DR--ESlf~lnv~eIPp 131 (243)
T PRK15290 116 DDR--ESVFWLNIKNIPP 131 (243)
T ss_pred CCe--eEEEEEEEEEcCC
Confidence 653 3446666666765
No 21
>PRK00846 hypothetical protein; Provisional
Probab=84.35 E-value=2.1 Score=35.86 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=44.3
Q ss_pred HHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcc
Q 041775 355 EEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 355 ~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
++|..+|..||+||.-.+.||..|++.=-..-++-+.|++.|..|+.|-
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999998888888899999999888654
No 22
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=83.93 E-value=4.2 Score=29.98 Aligned_cols=43 Identities=21% Similarity=0.116 Sum_probs=34.3
Q ss_pred EEEEcCCCCeE-EEEEeeCCCCceeecCCceeecCCCeEEEEEEe
Q 041775 27 VRLTNNTHHYV-AFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTM 70 (432)
Q Consensus 27 LtLtN~Sd~~V-AFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTL 70 (432)
.+++|.++.++ ..+|+| +=+...+......|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 57899987665 455655 46788888888999999999999874
No 23
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=83.81 E-value=2.7 Score=34.24 Aligned_cols=50 Identities=28% Similarity=0.420 Sum_probs=41.5
Q ss_pred HHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhh-------chHHHHHHHHHHHHHhhc
Q 041775 353 DIEEMKSKLNELQSKLSEAEVTISKLTEENRL-------GIQEKKILKGELDTLRSK 402 (432)
Q Consensus 353 d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~-------~~qe~~~Lq~El~~lr~k 402 (432)
-+..|..+|..+..|++-.+..+..|+-||.. +.++.++|+.|++.|++.
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999989899999999944 567889999999999864
No 24
>PRK02119 hypothetical protein; Provisional
Probab=83.65 E-value=2.6 Score=34.57 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=44.2
Q ss_pred HHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcc
Q 041775 354 IEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 354 ~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
+..|..++..||.|+.--+.+|..|++.=-..-++-+.|+++|..|+.+-
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999988888888899999999997654
No 25
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=82.95 E-value=9.6 Score=37.52 Aligned_cols=82 Identities=15% Similarity=0.264 Sum_probs=58.7
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeC----------C----CCceeecCCceeecCCCeEEEEEEec
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTT----------S----PKKYCVRPNVGIILPKSTCDFNVTMQ 71 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTT----------S----PkrY~VRPn~GII~PgeSv~I~VTLq 71 (432)
+.++.+.++|... ....+++|.|.++.+ |=|++. . ..-|.|-|+.-.|+||+...+.|...
T Consensus 24 i~l~~TRvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 5566677887753 347899999999876 555551 1 11399999999999999999999987
Q ss_pred cCccCCCCCCCCceEEEEEEEcCC
Q 041775 72 AQAVAPPDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 72 p~~~~P~D~q~kDKFLVQS~~Vp~ 95 (432)
+. ..|.|. .--|-+....+|+
T Consensus 99 ~~-~LP~DR--ESlf~lnv~~IPp 119 (234)
T PRK15192 99 GA-PLPADR--ESLFTLSIAAIPS 119 (234)
T ss_pred CC-CCCCcc--eEEEEEEEEecCC
Confidence 53 356553 3446666677775
No 26
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=82.91 E-value=11 Score=36.67 Aligned_cols=85 Identities=9% Similarity=0.185 Sum_probs=57.5
Q ss_pred ceEEecCeeEEeecCCCeeeEEEEEEcCCC-CeEEEEEee-CC-C---CceeecCCceeecCCCeEEEEEEeccCccCCC
Q 041775 5 LLEIQPKELKFIFELKKQSSCSVRLTNNTH-HYVAFKVKT-TS-P---KKYCVRPNVGIILPKSTCDFNVTMQAQAVAPP 78 (432)
Q Consensus 5 LLsIdPsEL~F~~p~~kq~s~tLtLtN~Sd-~~VAFKVKT-TS-P---krY~VRPn~GII~PgeSv~I~VTLqp~~~~P~ 78 (432)
-|.++|..+.|... ....+++|.|.++ .++...... .. . .-|.|-|+.-.|+||+...|.|..... ..|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLPQ 97 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCCC
Confidence 36778888888763 3478999999985 344333222 21 1 139999999999999999999987643 3455
Q ss_pred CCCCCceEEEEEEEcCC
Q 041775 79 DMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 79 D~q~kDKFLVQS~~Vp~ 95 (432)
|. .--|.+....+|+
T Consensus 98 Dr--ESlf~lnv~eIP~ 112 (228)
T PRK15208 98 DR--ESVYWINVKAIPA 112 (228)
T ss_pred Ce--eEEEEEEEEEcCC
Confidence 43 2336666666664
No 27
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=82.65 E-value=5.4 Score=34.11 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=36.1
Q ss_pred eEEEEEEcCCCCeEEEEEeeCCCCceee-cCCce-eecCCCeEEEEEEeccCc
Q 041775 24 SCSVRLTNNTHHYVAFKVKTTSPKKYCV-RPNVG-IILPKSTCDFNVTMQAQA 74 (432)
Q Consensus 24 s~tLtLtN~Sd~~VAFKVKTTSPkrY~V-RPn~G-II~PgeSv~I~VTLqp~~ 74 (432)
..+++|.|.++++..|.|+...+..+.+ .|... -|.||+...+.|.+....
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-G
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECH
Confidence 6789999999999999999988888888 66444 599999999999886554
No 28
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.04 E-value=21 Score=34.92 Aligned_cols=85 Identities=14% Similarity=0.178 Sum_probs=65.5
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeC-------CCCceeecCCceeecCCCeEEEEEEeccCccCCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTT-------SPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPP 78 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTT-------SPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~ 78 (432)
+.+++..+.|.... ....++|.|.++.++.-.+.-- ...-|.|-|+.-.|+||+...|.|.+.+. ..|.
T Consensus 29 v~i~~TRiI~~~~~---k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP~ 104 (235)
T COG3121 29 VVLGGTRIIYPAGD---KETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLPA 104 (235)
T ss_pred EEecceEEEEeCCC---ceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCCC
Confidence 45667778877543 4679999998889999886654 24458999999999999999999999987 4566
Q ss_pred CCCCCceEEEEEEEcCCC
Q 041775 79 DMVCKDKFLIQSTVVPVG 96 (432)
Q Consensus 79 D~q~kDKFLVQS~~Vp~g 96 (432)
|. ..-|.+..-.+|+.
T Consensus 105 dr--Eslf~lnv~eIPp~ 120 (235)
T COG3121 105 DR--ESLFRLNVDEIPPK 120 (235)
T ss_pred Cc--eeEEEEEeeecCCC
Confidence 53 45677777777653
No 29
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=80.37 E-value=16 Score=35.96 Aligned_cols=84 Identities=13% Similarity=0.271 Sum_probs=57.6
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCC-eEEEEEee-C-C---CCceeecCCceeecCCCeEEEEEEeccCccCCCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHH-YVAFKVKT-T-S---PKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPD 79 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~-~VAFKVKT-T-S---PkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D 79 (432)
+.++++.+.|... ....+++|+|.+++ +..-.... + . ..-|.|.|+.-.|+||+...+.|..... ..|.|
T Consensus 29 i~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP~D 104 (228)
T PRK15188 29 IALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLPTD 104 (228)
T ss_pred EEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 5677778888753 34789999999854 33322222 1 1 1249999999999999999999998753 35555
Q ss_pred CCCCceEEEEEEEcCC
Q 041775 80 MVCKDKFLIQSTVVPV 95 (432)
Q Consensus 80 ~q~kDKFLVQS~~Vp~ 95 (432)
. ..-|-+....+|+
T Consensus 105 R--ESlf~lnv~~IP~ 118 (228)
T PRK15188 105 R--ESVFYLNSKAIPS 118 (228)
T ss_pred c--eEEEEEEEEecCC
Confidence 3 3446666666665
No 30
>PRK02793 phi X174 lysis protein; Provisional
Probab=79.76 E-value=3.9 Score=33.43 Aligned_cols=50 Identities=28% Similarity=0.322 Sum_probs=43.7
Q ss_pred HHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcccc
Q 041775 356 EMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVV 405 (432)
Q Consensus 356 ~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~ 405 (432)
+|..+|..||.|+.-.+.+|..|++.=-..-++-+.|+++|..|+.+-..
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47789999999999999999999999888888889999999999765433
No 31
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=79.37 E-value=19 Score=35.60 Aligned_cols=85 Identities=14% Similarity=0.152 Sum_probs=58.8
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCC-CeEEEEEeeC--C--C-CceeecCCceeecCCCeEEEEEEecc--CccCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTH-HYVAFKVKTT--S--P-KKYCVRPNVGIILPKSTCDFNVTMQA--QAVAP 77 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd-~~VAFKVKTT--S--P-krY~VRPn~GII~PgeSv~I~VTLqp--~~~~P 77 (432)
+.+++..++|... ....+++|.|.++ .++.-..... . + .-|.|.|+.-.|+||+...|.|.... +...|
T Consensus 18 v~l~~TRvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~lP 94 (239)
T PRK15254 18 VNVDRTRIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKLP 94 (239)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCCC
Confidence 5677778888753 3478999999975 4554443321 1 1 24999999999999999999999874 23456
Q ss_pred CCCCCCceEEEEEEEcCC
Q 041775 78 PDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 78 ~D~q~kDKFLVQS~~Vp~ 95 (432)
.|. ..-|-+....+|+
T Consensus 95 ~DR--ESlf~lnv~~IP~ 110 (239)
T PRK15254 95 QDR--ETLFWFNVRGVPP 110 (239)
T ss_pred CCc--eEEEEEEEEEcCC
Confidence 553 3446666666765
No 32
>PRK00295 hypothetical protein; Provisional
Probab=79.31 E-value=4 Score=33.04 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=42.1
Q ss_pred HHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcccc
Q 041775 357 MKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVV 405 (432)
Q Consensus 357 l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~ 405 (432)
|..++..||.|+.-.+.||..|++.=-.--++-+.|++.|..|+.+-..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999888888889999999999765433
No 33
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=78.72 E-value=20 Score=35.01 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=55.5
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCC-eEE-EEEeeCC----CCceeecCCceeecCCCeEEEEEEeccCccCCCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHH-YVA-FKVKTTS----PKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPD 79 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~-~VA-FKVKTTS----PkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D 79 (432)
+.+++..+.|.... ..++++|.|.+++ +.. +..-.+. ..-|.|.|+.--|+||+...|.|..... ..|.|
T Consensus 27 i~i~~TRvIy~~~~---~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~D 102 (229)
T PRK15195 27 IALGATRVIYPADA---KQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAAD 102 (229)
T ss_pred EEECCeEEEEeCCC---ceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 56777788887532 3589999999854 333 3211111 1259999999999999999999998743 34554
Q ss_pred CCCCceEEEEEEEcCC
Q 041775 80 MVCKDKFLIQSTVVPV 95 (432)
Q Consensus 80 ~q~kDKFLVQS~~Vp~ 95 (432)
.. .-|.+....+|+
T Consensus 103 rE--Slf~Lnv~eIP~ 116 (229)
T PRK15195 103 RE--SLFWMNVKAIPS 116 (229)
T ss_pred ee--EEEEEEeeecCC
Confidence 32 335555556664
No 34
>PRK00736 hypothetical protein; Provisional
Probab=78.64 E-value=4.3 Score=32.86 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=41.1
Q ss_pred HHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhccc
Q 041775 358 KSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSV 404 (432)
Q Consensus 358 ~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~ 404 (432)
..++..||.|+--.+.+|..|++.=-.--++-+.|++.|..|+.|-.
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999988888888999999999976543
No 35
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=75.63 E-value=41 Score=32.97 Aligned_cols=83 Identities=14% Similarity=0.186 Sum_probs=56.4
Q ss_pred EEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCC----------CceeecCCceeecCCCeEEEEEEeccCccC
Q 041775 7 EIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSP----------KKYCVRPNVGIILPKSTCDFNVTMQAQAVA 76 (432)
Q Consensus 7 sIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSP----------krY~VRPn~GII~PgeSv~I~VTLqp~~~~ 76 (432)
.++-+.+.|.. +....+++|.|.++.++.-....... .-|.|.|+.-.|+||+...+.|..... ..
T Consensus 21 ~l~~TRvIy~~---~~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~L 96 (226)
T PRK15218 21 YIYGTRIIYPA---QKKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLAN-NL 96 (226)
T ss_pred EeCceEEEEcC---CCcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-CC
Confidence 34445677764 33467899999988764333322211 149999999999999999999998753 45
Q ss_pred CCCCCCCceEEEEEEEcCC
Q 041775 77 PPDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 77 P~D~q~kDKFLVQS~~Vp~ 95 (432)
|.|. .--|-+....+|+
T Consensus 97 P~DR--ESlfwlnv~~IPp 113 (226)
T PRK15218 97 PGDR--ESLFYLNVLDIPP 113 (226)
T ss_pred Ccce--eEEEEEEEEEcCC
Confidence 6553 3446777777775
No 36
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=75.25 E-value=19 Score=30.08 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=18.2
Q ss_pred cchhHHHHHHHHHHhhhhc
Q 041775 413 PLLFVCMVALISFVLGRLI 431 (432)
Q Consensus 413 pllfv~~vali~~~~g~~~ 431 (432)
|+--|.+.+.+|++||+|+
T Consensus 73 P~~svgiAagvG~llG~Ll 91 (94)
T PF05957_consen 73 PWQSVGIAAGVGFLLGLLL 91 (94)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987
No 37
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=72.76 E-value=49 Score=32.76 Aligned_cols=81 Identities=11% Similarity=0.198 Sum_probs=56.4
Q ss_pred EEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEee----CC---CCceeecCCceeecCCCeEEEEEEeccCccCCCC
Q 041775 7 EIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKT----TS---PKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPD 79 (432)
Q Consensus 7 sIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKT----TS---PkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D 79 (432)
.++-+.+.|.. +....+|+|.|.++.+ |=|++ .. ..-|.|.|+.-.|+|++...+.|.... ...|.|
T Consensus 31 ~l~~TRvIy~~---~~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~-~~LP~D 104 (237)
T PRK15224 31 KLGATRVIYHA---GTAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTG-GDMPTD 104 (237)
T ss_pred EeCceEEEEeC---CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECC-CCCCCc
Confidence 34445677764 2346789999998776 55554 11 123999999999999999999999874 346765
Q ss_pred CCCCceEEEEEEEcCC
Q 041775 80 MVCKDKFLIQSTVVPV 95 (432)
Q Consensus 80 ~q~kDKFLVQS~~Vp~ 95 (432)
. .--|-+....+|+
T Consensus 105 R--ESlFwlnv~~IPp 118 (237)
T PRK15224 105 R--ETLQWVCIKAVPP 118 (237)
T ss_pred e--eEEEEEEEEEcCC
Confidence 3 2346666667775
No 38
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.05 E-value=9.7 Score=36.19 Aligned_cols=57 Identities=33% Similarity=0.435 Sum_probs=38.1
Q ss_pred hHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 041775 345 AEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 345 ~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k 402 (432)
.....+.+++++++.++..|+.+|+++..- ..=++||....++.+.|++++..|+..
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~-r~~~~eR~~~l~~l~~l~~~~~~l~~e 125 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKG-REESEEREELLEELEELKKELKELKKE 125 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777777777777776322 233467777777777777777777653
No 39
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=71.63 E-value=10 Score=32.21 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=33.2
Q ss_pred CCeeeEEEEEEcCCCCeEEEEEeeC-----C---CCceee-------------cCCceeecCCCeEEEEEEeccCc
Q 041775 20 KKQSSCSVRLTNNTHHYVAFKVKTT-----S---PKKYCV-------------RPNVGIILPKSTCDFNVTMQAQA 74 (432)
Q Consensus 20 ~kq~s~tLtLtN~Sd~~VAFKVKTT-----S---PkrY~V-------------RPn~GII~PgeSv~I~VTLqp~~ 74 (432)
++..+..|+|+|.+++.+.|++.-. . .+.|.. .|..=.|.||++.+|.|++....
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--G
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehh
Confidence 3446889999999999999997654 1 122221 12223688999999999888743
No 40
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=70.72 E-value=24 Score=32.84 Aligned_cols=13 Identities=23% Similarity=0.444 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhhh
Q 041775 418 CMVALISFVLGRL 430 (432)
Q Consensus 418 ~~vali~~~~g~~ 430 (432)
+++|.+++++||+
T Consensus 161 ~i~~~~a~~la~~ 173 (177)
T PF07798_consen 161 VIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555666664
No 41
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=69.81 E-value=44 Score=33.36 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=54.1
Q ss_pred EecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEee--C--C---CCceeecCCceeecCCCeEEEEEEeccCccCCCCC
Q 041775 8 IQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKT--T--S---PKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDM 80 (432)
Q Consensus 8 IdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKT--T--S---PkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~ 80 (432)
++-+.+.|... ....+++|.|.++.+ |-|++ . . ..-|.|.|+.-.|+|++...+.|..... ..|.|.
T Consensus 44 l~~TRvIy~~~---~~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~DR 117 (246)
T PRK15233 44 LGTTRVIYKED---APSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNKNE 117 (246)
T ss_pred eCceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCcCc
Confidence 33345666542 246799999987776 44444 1 1 1249999999999999999999998753 456553
Q ss_pred CCCceEEEEEEEcCC
Q 041775 81 VCKDKFLIQSTVVPV 95 (432)
Q Consensus 81 q~kDKFLVQS~~Vp~ 95 (432)
. --|.+....+|+
T Consensus 118 E--Slfwlnv~~IPp 130 (246)
T PRK15233 118 E--SLYWLCVKGVPP 130 (246)
T ss_pred e--EEEEEEEEEcCC
Confidence 2 236666666775
No 42
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=68.77 E-value=73 Score=31.98 Aligned_cols=84 Identities=19% Similarity=0.191 Sum_probs=56.5
Q ss_pred EEecCeeEEeecCCCeeeEEEEEEcCCCC-eEEEEEeeCC------CCceeecCCceeecCCCeEEEEEEecc-CccCCC
Q 041775 7 EIQPKELKFIFELKKQSSCSVRLTNNTHH-YVAFKVKTTS------PKKYCVRPNVGIILPKSTCDFNVTMQA-QAVAPP 78 (432)
Q Consensus 7 sIdPsEL~F~~p~~kq~s~tLtLtN~Sd~-~VAFKVKTTS------PkrY~VRPn~GII~PgeSv~I~VTLqp-~~~~P~ 78 (432)
.++-+.++|.. +....+|+|.|.++. ++.-...... ..-|.|.|+.-.|+||+...|.|...+ ....|.
T Consensus 29 ~l~~TRvIy~e---~~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP~ 105 (257)
T PRK15274 29 VPDRTRVIFNG---NENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQ 105 (257)
T ss_pred EeCceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCC
Confidence 33445677764 234679999999865 5443332211 114999999999999999999999876 344665
Q ss_pred CCCCCceEEEEEEEcCC
Q 041775 79 DMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 79 D~q~kDKFLVQS~~Vp~ 95 (432)
|. .--|-+....+|+
T Consensus 106 DR--ESlFwlNv~eIPp 120 (257)
T PRK15274 106 DR--ESLFYFNVREIPP 120 (257)
T ss_pred ce--eEEEEEEEEEcCC
Confidence 53 2346677777775
No 43
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=68.18 E-value=76 Score=31.48 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=56.1
Q ss_pred EEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCC------C----CceeecCCceeecCCCeEEEEEEeccCccC
Q 041775 7 EIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTS------P----KKYCVRPNVGIILPKSTCDFNVTMQAQAVA 76 (432)
Q Consensus 7 sIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTS------P----krY~VRPn~GII~PgeSv~I~VTLqp~~~~ 76 (432)
.++-+-++|... ....+++|.|.++.++.-...... | .-|.|-|+.-.|+|++...+.|...+. ..
T Consensus 36 ~l~~TRvIy~~~---~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~L 111 (242)
T PRK15253 36 VIYGTRVIYPAE---KKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPN-SL 111 (242)
T ss_pred EeCceEEEEeCC---CceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-CC
Confidence 334446777642 346789999998876443332221 1 249999999999999999999987653 45
Q ss_pred CCCCCCCceEEEEEEEcCC
Q 041775 77 PPDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 77 P~D~q~kDKFLVQS~~Vp~ 95 (432)
|.|. .--|-+....+|+
T Consensus 112 P~DR--ESlfwlnv~~IPp 128 (242)
T PRK15253 112 PDNK--ESLFYLNVLDIPP 128 (242)
T ss_pred Ccce--eEEEEEEEEEcCC
Confidence 6653 2446666677775
No 44
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=66.39 E-value=21 Score=35.15 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=54.7
Q ss_pred HHHhhhchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHH-hhccc
Q 041775 336 ELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTL-RSKSV 404 (432)
Q Consensus 336 ~~~~~~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~l-r~k~~ 404 (432)
.+=+..++..+.+-=-..|+.||.....+|.+|++|...+...+.+-..+++.|...|.|+..| .||..
T Consensus 16 ~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~s 85 (207)
T PF05546_consen 16 ETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHS 85 (207)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3434444444433334899999999999999999999999999999999999999999999654 55443
No 45
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=66.29 E-value=14 Score=30.61 Aligned_cols=47 Identities=32% Similarity=0.434 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhh--hhchHH--HHHHHHHH
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEEN--RLGIQE--KKILKGEL 396 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~--~~~~qe--~~~Lq~El 396 (432)
|++|+.+|-.....|-.||.+++.-+.+++++. ..++.. ...|+.|-
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~ 51 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTER 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999998888 444432 23355554
No 46
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=65.89 E-value=16 Score=39.74 Aligned_cols=42 Identities=31% Similarity=0.306 Sum_probs=30.1
Q ss_pred hhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcc
Q 041775 362 NELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 362 ~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
-+|=+.|+|||...+--.+--...-||+++|+++|+.|+||-
T Consensus 430 gEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh 471 (488)
T PF06548_consen 430 GELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKH 471 (488)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666665555444555667899999999999999865
No 47
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=65.64 E-value=16 Score=29.44 Aligned_cols=46 Identities=28% Similarity=0.497 Sum_probs=27.3
Q ss_pred HHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 355 EEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 355 ~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
+.++.||+.++.++.+-+..|.+|.--....-++...+.+.|..+.
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666664333333334456777777776
No 48
>PRK10132 hypothetical protein; Provisional
Probab=64.25 E-value=32 Score=30.37 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.2
Q ss_pred CCcchhHHHHHHHHHHhhhhc
Q 041775 411 GFPLLFVCMVALISFVLGRLI 431 (432)
Q Consensus 411 GFpllfv~~vali~~~~g~~~ 431 (432)
-=|+--|.+.|.+|+++|+|+
T Consensus 84 ~~Pw~svgiaagvG~llG~Ll 104 (108)
T PRK10132 84 ERPWCSVGTAAAVGIFIGALL 104 (108)
T ss_pred hCcHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999986
No 49
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=62.52 E-value=1.2e+02 Score=30.28 Aligned_cols=83 Identities=20% Similarity=0.155 Sum_probs=55.2
Q ss_pred EecCeeEEeecCCCeeeEEEEEEcCCCC-eEEEEEeeC--CCC----ceeecCCceeecCCCeEEEEEEecc-CccCCCC
Q 041775 8 IQPKELKFIFELKKQSSCSVRLTNNTHH-YVAFKVKTT--SPK----KYCVRPNVGIILPKSTCDFNVTMQA-QAVAPPD 79 (432)
Q Consensus 8 IdPsEL~F~~p~~kq~s~tLtLtN~Sd~-~VAFKVKTT--SPk----rY~VRPn~GII~PgeSv~I~VTLqp-~~~~P~D 79 (432)
++-+.+.|.. +....+++|+|.++. ++.-..... ..+ -|.|-|+.-.|+||+...+.|...+ ....|.|
T Consensus 29 l~~TRVIy~~---~~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~D 105 (250)
T PRK15285 29 PDRTRLVFRG---EDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQD 105 (250)
T ss_pred eCccEEEEcC---CCceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCC
Confidence 3334677764 234679999999764 443332211 111 3999999999999999999999875 3445665
Q ss_pred CCCCceEEEEEEEcCC
Q 041775 80 MVCKDKFLIQSTVVPV 95 (432)
Q Consensus 80 ~q~kDKFLVQS~~Vp~ 95 (432)
. .--|-+....+|+
T Consensus 106 R--ESlfwlnv~~IPp 119 (250)
T PRK15285 106 R--ETLFYYNVREIPP 119 (250)
T ss_pred c--eEEEEEEEEEcCC
Confidence 3 3446666667775
No 50
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=59.95 E-value=36 Score=36.29 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=40.3
Q ss_pred CCeeeEEEEEEcCCCCeEEEEEeeCC------C-CceeecCCce--------------eecCCCeEEEEEEeccCc
Q 041775 20 KKQSSCSVRLTNNTHHYVAFKVKTTS------P-KKYCVRPNVG--------------IILPKSTCDFNVTMQAQA 74 (432)
Q Consensus 20 ~kq~s~tLtLtN~Sd~~VAFKVKTTS------P-krY~VRPn~G--------------II~PgeSv~I~VTLqp~~ 74 (432)
++..+-+++++|.++.+|-.+==+|+ | +.|...|+.. =|.||++.+|.|..|...
T Consensus 281 GR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA~ 356 (399)
T TIGR03079 281 GRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDAL 356 (399)
T ss_pred CcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehhh
Confidence 57778899999999999988743443 4 4444444432 389999999999988643
No 51
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.63 E-value=20 Score=36.32 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=54.1
Q ss_pred hhchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 041775 340 KAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 340 ~~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k 402 (432)
.+.++..+.++.++.+++..+|.-|+.+.++.-.-|..++++-...-++-.+||+|++.|+..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778889999999999999999999999999999999999999999999999988753
No 52
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=58.63 E-value=23 Score=29.48 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhhhHhhhhhhhhhhh
Q 041775 351 VKDIEEMKSKLNELQSKLSEAEVTI 375 (432)
Q Consensus 351 ~~d~~~l~~kl~~le~kl~ea~~~I 375 (432)
.+|..+++.||+.+|.|.|-.-+-|
T Consensus 11 ~~d~~~i~~rLd~iEeKVEf~~~E~ 35 (70)
T TIGR01149 11 PDEFNEVMKRLDEIEEKVEFVNGEV 35 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999998765543
No 53
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=58.32 E-value=36 Score=30.56 Aligned_cols=57 Identities=28% Similarity=0.342 Sum_probs=43.3
Q ss_pred hHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 345 AEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 345 ~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
.+..++..+++-|+.++..++.++.-++.-...|+.+-+....-...+++|+..++.
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888888877777777877777777777777777776664
No 54
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=57.94 E-value=36 Score=30.58 Aligned_cols=57 Identities=28% Similarity=0.370 Sum_probs=44.3
Q ss_pred HHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhh---hhchHHHHHHHHHHHHHhhc
Q 041775 346 EELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEEN---RLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 346 ~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~---~~~~qe~~~Lq~El~~lr~k 402 (432)
.+..+--.+..++..+..|+..-++|..-|.+|+.+. +....+...|+.++..|..|
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677788888888888888888888888777 66777888888888888753
No 55
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.60 E-value=28 Score=33.12 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=47.6
Q ss_pred hHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhccc
Q 041775 345 AEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSV 404 (432)
Q Consensus 345 ~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~ 404 (432)
......-.-++.|+.++..++.++.+.+..|..++.+|..+ .||..+-+++..|+....
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~ 120 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELK 120 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHH
Confidence 34445667788889999999999999999999997766555 999999999999987543
No 56
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=57.01 E-value=20 Score=28.55 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=33.0
Q ss_pred CCeeeEEEEEEcCCCCeE-EEEEeeCCCCcee--ecCCc-eeecCCCeEEEEEEeccCcc
Q 041775 20 KKQSSCSVRLTNNTHHYV-AFKVKTTSPKKYC--VRPNV-GIILPKSTCDFNVTMQAQAV 75 (432)
Q Consensus 20 ~kq~s~tLtLtN~Sd~~V-AFKVKTTSPkrY~--VRPn~-GII~PgeSv~I~VTLqp~~~ 75 (432)
+...+-.++++|.++.++ ..++.-+.|.-+. ..|.. +-|.||++..+.+.+.+...
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 445677899999976542 3555555688888 44544 47999999999999987654
No 57
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.57 E-value=87 Score=30.45 Aligned_cols=43 Identities=7% Similarity=0.025 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHH
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKG 394 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~ 394 (432)
..+++.+...++|+.+.++....+.+++.+++...++.+.+|.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555444444444443
No 58
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=54.23 E-value=42 Score=30.99 Aligned_cols=30 Identities=40% Similarity=0.359 Sum_probs=14.2
Q ss_pred hhhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 371 AEVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 371 a~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
+...|..|.++-...+++++.|..||+.||
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444
No 59
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=54.03 E-value=34 Score=35.83 Aligned_cols=103 Identities=23% Similarity=0.259 Sum_probs=70.2
Q ss_pred HHHHhhcCCccccccccCCcchHHHHHHHHHHHhhhchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhc
Q 041775 306 EKVIELNLPKEVVNGEELQPKKDAELKLMKELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLG 385 (432)
Q Consensus 306 ~~~~~~~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~ 385 (432)
.+.++..+|..-..|.-++..-..-+.-+.-++- .=|.+..++..+....+.+|+..+.+..+|...++.++.+=..-
T Consensus 229 ~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk--~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 229 KKSIESALPETKSQLDKLQQDISKTLEKIESREK--YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3466666666655555433332222222222221 11346677888888899999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHHhhcccccccccCCcch
Q 041775 386 IQEKKILKGELDTLRSKSVVKNVHVGFPLL 415 (432)
Q Consensus 386 ~qe~~~Lq~El~~lr~k~~~k~~~~GFpll 415 (432)
..|.+..|+||+. ||+. .-.|-||.
T Consensus 307 seeLe~vK~emee---rg~~--mtD~sPlv 331 (359)
T PF10498_consen 307 SEELEQVKQEMEE---RGSS--MTDGSPLV 331 (359)
T ss_pred HHHHHHHHHHHHH---hcCC--CCCCCHHH
Confidence 9999999999998 4432 23377764
No 60
>PLN03188 kinesin-12 family protein; Provisional
Probab=54.02 E-value=27 Score=42.24 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=27.4
Q ss_pred hHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcc
Q 041775 363 ELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 363 ~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
+|=+.|+|||...+--.+--..+-||..+++++|+.|+||-
T Consensus 1201 ellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1201 ELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444333334456799999999999999875
No 61
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=53.91 E-value=88 Score=25.67 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=39.6
Q ss_pred CCeeeEEEEEEcCCCCeEE-EEEeeCCCCceeec--CCc-eeecCCCeEEEEEEeccC
Q 041775 20 KKQSSCSVRLTNNTHHYVA-FKVKTTSPKKYCVR--PNV-GIILPKSTCDFNVTMQAQ 73 (432)
Q Consensus 20 ~kq~s~tLtLtN~Sd~~VA-FKVKTTSPkrY~VR--Pn~-GII~PgeSv~I~VTLqp~ 73 (432)
+....-.++..|.+..++. |.++-..|+-+.++ |.. ..|.||+.+...+.+...
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~~ 74 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVENP 74 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEECC
Confidence 3456778888999887776 88887778877764 554 479999887777766553
No 62
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=52.60 E-value=45 Score=26.86 Aligned_cols=44 Identities=39% Similarity=0.448 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 351 VKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 351 ~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
-+-+...|+-.-++++||.+|+.-+.-|. +|-+.|+.||+.+|.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~-------~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELE-------QEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 34444567777788888888887766664 456778888888874
No 63
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=52.33 E-value=22 Score=36.36 Aligned_cols=48 Identities=29% Similarity=0.425 Sum_probs=25.8
Q ss_pred HHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 353 DIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 353 d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
..++...+|...+.+|.+.+..|..|+.+...+++|++.|++++....
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 276 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETE 276 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555555443
No 64
>PRK10404 hypothetical protein; Provisional
Probab=50.16 E-value=58 Score=28.38 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=17.8
Q ss_pred CcchhHHHHHHHHHHhhhhc
Q 041775 412 FPLLFVCMVALISFVLGRLI 431 (432)
Q Consensus 412 Fpllfv~~vali~~~~g~~~ 431 (432)
=|+--|.+.|.+|+++|+||
T Consensus 79 ~Pw~avGiaagvGlllG~Ll 98 (101)
T PRK10404 79 KPWQGIGVGAAVGLVLGLLL 98 (101)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 48888889999999999986
No 65
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=49.88 E-value=62 Score=27.06 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=40.2
Q ss_pred CCCeeeEEEEEEcCCCCe--------EEEEEeeCCCC--ceeecCCceeecCCCeEEEEEEeccCcc
Q 041775 19 LKKQSSCSVRLTNNTHHY--------VAFKVKTTSPK--KYCVRPNVGIILPKSTCDFNVTMQAQAV 75 (432)
Q Consensus 19 ~~kq~s~tLtLtN~Sd~~--------VAFKVKTTSPk--rY~VRPn~GII~PgeSv~I~VTLqp~~~ 75 (432)
.++.....++++|+++.+ -|+-|--|.-- ....+-..+-|.||++..+.+.+.+..+
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQY 79 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEceeE
Confidence 467789999999998877 55555555332 2456778899999999999999987754
No 66
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=49.61 E-value=57 Score=36.87 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=49.0
Q ss_pred hhhHHHhHHHHHHHHHHhhhhHhhhhhhh-----------------hhhhhhhhhhhhhchHHHHHHHHHHHHHhhcccc
Q 041775 343 KAAEELELVKDIEEMKSKLNELQSKLSEA-----------------EVTISKLTEENRLGIQEKKILKGELDTLRSKSVV 405 (432)
Q Consensus 343 ~~~~~~~~~~d~~~l~~kl~~le~kl~ea-----------------~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~ 405 (432)
...+..+|-.-+++||..+.+|+++|+++ +..|-+|+-+=+..-...++|+.+|..||+-...
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~l 513 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKL 513 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555667777778888888888888773 3345555555455555677889999999854444
Q ss_pred cccccCCcchhHH
Q 041775 406 KNVHVGFPLLFVC 418 (432)
Q Consensus 406 k~~~~GFpllfv~ 418 (432)
-.+--|.|+.-|=
T Consensus 514 E~sG~g~pvk~ve 526 (652)
T COG2433 514 ELSGKGTPVKVVE 526 (652)
T ss_pred hhcCCCcceehhh
Confidence 3333378876543
No 67
>PRK11637 AmiB activator; Provisional
Probab=48.87 E-value=43 Score=35.03 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=15.5
Q ss_pred HHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHH
Q 041775 354 IEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGE 395 (432)
Q Consensus 354 ~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~E 395 (432)
+..+..+|+.++.++++.+..|.++..+-....++.+.++.+
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 68
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=48.64 E-value=65 Score=26.78 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=13.6
Q ss_pred eEEEEEEcCCCCeEEEEEee
Q 041775 24 SCSVRLTNNTHHYVAFKVKT 43 (432)
Q Consensus 24 s~tLtLtN~Sd~~VAFKVKT 43 (432)
.-.|+|+|+++++|-+...|
T Consensus 3 ~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEeCCCCeEEEEeCC
Confidence 45788888888888887755
No 69
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.33 E-value=64 Score=28.45 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
.+.+-+.+|...|..|-.++.+-+..|..|-||+-.=.-|++.|++-|..+..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566777888888888888888888899999988888888888888887754
No 70
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=47.91 E-value=67 Score=26.34 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=33.4
Q ss_pred eEEEEEEcCCCCeEEEEEeeCCCCcee-ecCCceeecCCCeEEEEEEec
Q 041775 24 SCSVRLTNNTHHYVAFKVKTTSPKKYC-VRPNVGIILPKSTCDFNVTMQ 71 (432)
Q Consensus 24 s~tLtLtN~Sd~~VAFKVKTTSPkrY~-VRPn~GII~PgeSv~I~VTLq 71 (432)
.-.|+|.|.+...+.|.|... .|. -.|..=.|.||++..+.+-+.
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~---~y~~~~~~~~~v~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDN---AYGGGGPWTYTVAAGQTVSLTWPLA 66 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeC---CcCCCCCEEEEECCCCEEEEEEeec
Confidence 668999999999999999872 222 334555666688888888773
No 71
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=46.96 E-value=44 Score=33.44 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=18.1
Q ss_pred hhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 371 AEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 371 a~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
+..-|.++++|.-..+|| .++.++..++
T Consensus 118 ~~~ei~k~r~e~~~ml~e---vK~~~E~y~k 145 (230)
T PF03904_consen 118 AQNEIKKVREENKSMLQE---VKQSHEKYQK 145 (230)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 444567777777777776 5566666654
No 72
>PRK11637 AmiB activator; Provisional
Probab=46.70 E-value=49 Score=34.63 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=26.8
Q ss_pred HhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHH
Q 041775 348 LELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTL 399 (432)
Q Consensus 348 ~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~l 399 (432)
..+.+.++++..+++.++.+|.+.+.-|.+|.++-...-.+-+.++..|..+
T Consensus 78 ~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 78 KKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555554444444444444443
No 73
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.27 E-value=43 Score=29.53 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=44.8
Q ss_pred HHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhccc
Q 041775 353 DIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSV 404 (432)
Q Consensus 353 d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~ 404 (432)
|=.+|=..|..||..|.+--..|..|+..=...+.|+..|+-|-+-||.+-.
T Consensus 2 dk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999999999999999999999997543
No 74
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=45.83 E-value=80 Score=26.54 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=39.1
Q ss_pred eEEeecC---CCeeeEEEEEEcCCCCeEE-EEEeeCCCCceee--cCC-ceeecCCCeEEEEEEecc
Q 041775 13 LKFIFEL---KKQSSCSVRLTNNTHHYVA-FKVKTTSPKKYCV--RPN-VGIILPKSTCDFNVTMQA 72 (432)
Q Consensus 13 L~F~~p~---~kq~s~tLtLtN~Sd~~VA-FKVKTTSPkrY~V--RPn-~GII~PgeSv~I~VTLqp 72 (432)
+.|.... .....-.++..|.+..++. |.++-..|+.|.+ .|. ...|.|+..+.-.+.+..
T Consensus 13 I~~~~~~~~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 13 IGFKSEKSPNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp EEEEEEECCETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred EEEEEEecCCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 4444442 5667778899999887776 7777666666555 455 569999988887776655
No 75
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=45.81 E-value=63 Score=28.72 Aligned_cols=52 Identities=27% Similarity=0.425 Sum_probs=34.2
Q ss_pred HHHHHHHhhhhHhhhhhh----hhhhhhhhhhhhhhchHHHHHHHHHHHHHhhccc
Q 041775 353 DIEEMKSKLNELQSKLSE----AEVTISKLTEENRLGIQEKKILKGELDTLRSKSV 404 (432)
Q Consensus 353 d~~~l~~kl~~le~kl~e----a~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~ 404 (432)
.++.++..++.++..+.+ |+..-..|.+.+..-..++..|+.|+..+.++..
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~ 115 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIE 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554443 4455556667777778889999999999987654
No 76
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=45.79 E-value=24 Score=34.42 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=38.2
Q ss_pred HHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcc
Q 041775 353 DIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 353 d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
++.++-.|+.+|+.+|+...-.-..--++.-....+|..|++|+..||++.
T Consensus 215 ~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l 265 (268)
T PF13234_consen 215 EFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQL 265 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777776555555556678888899999999999999753
No 77
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.17 E-value=72 Score=25.54 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=34.4
Q ss_pred HHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHH
Q 041775 346 EELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQE 388 (432)
Q Consensus 346 ~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe 388 (432)
..-+|..||+.|++|.+.|.+...-...-|+..++|--++.+-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999988888888777775554443
No 78
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=44.13 E-value=34 Score=29.34 Aligned_cols=59 Identities=25% Similarity=0.322 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhh--hhhhhhhh-chHHHHH-------HHHHHHHHhhcccccccc
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTIS--KLTEENRL-GIQEKKI-------LKGELDTLRSKSVVKNVH 409 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~--kL~Ee~~~-~~qe~~~-------Lq~El~~lr~k~~~k~~~ 409 (432)
|++.|+.+..||....-.|+..+.-+- .|..|.|. .-.|... ..+||..||+ .++|+-.
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk-ENrK~~~ 71 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK-ENRKSML 71 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH-hhhhhHH
Confidence 455566666565555555555444332 24444333 3334433 4578899995 7777433
No 79
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=43.77 E-value=60 Score=25.88 Aligned_cols=47 Identities=32% Similarity=0.376 Sum_probs=36.6
Q ss_pred HHHHHhhhhHhhhhhhhhhhhhhhhhhhhhch-HHHHHHHHHHHHHhh
Q 041775 355 EEMKSKLNELQSKLSEAEVTISKLTEENRLGI-QEKKILKGELDTLRS 401 (432)
Q Consensus 355 ~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~-qe~~~Lq~El~~lr~ 401 (432)
++=+..+...+..|+||+.+|..+.-|-|..- .+|..++..+...|.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~ 68 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRS 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46677788889999999999999987766554 788888877776664
No 80
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=43.04 E-value=2.3e+02 Score=25.15 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=24.3
Q ss_pred eEEeecCCCeeeEEEEEEcCCCCeEEEEEe
Q 041775 13 LKFIFELKKQSSCSVRLTNNTHHYVAFKVK 42 (432)
Q Consensus 13 L~F~~p~~kq~s~tLtLtN~Sd~~VAFKVK 42 (432)
..+...++....-.++|+|.+++.+.|+|.
T Consensus 19 FdL~~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 19 FDLKVKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred EEEEeCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 344456677788899999999999999975
No 81
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.71 E-value=56 Score=37.83 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=55.3
Q ss_pred cccCCcchHHHHHHHHH---HHhhhchhhHHHhHHHHHHHHHHhhhhHhhhhhh-hhhhhhhhhhhhhhchHHHHH
Q 041775 320 GEELQPKKDAELKLMKE---LEFKAGKAAEELELVKDIEEMKSKLNELQSKLSE-AEVTISKLTEENRLGIQEKKI 391 (432)
Q Consensus 320 ~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~~d~~~l~~kl~~le~kl~e-a~~~I~kL~Ee~~~~~qe~~~ 391 (432)
|++.--++|+|+..|-+ +|+.-+ =.+++.|--|+|.|||.++-+..+|.+ |..+|+++.+=-|..+|+|+.
T Consensus 53 Le~~ir~~d~EIE~lcn~hyQdFids-IdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~rni 127 (800)
T KOG2176|consen 53 LENRIRNHDKEIEKLCNFHYQDFIDS-IDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQSRNI 127 (800)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44444457788877765 456555 356677779999999999999999998 556889999989999999874
No 82
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=42.09 E-value=38 Score=35.60 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcccccccccCC-------cchhHHHHH
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHVGF-------PLLFVCMVA 421 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~k~~~~GF-------pllfv~~va 421 (432)
-++-....-..|+..|+-++.|-.... + +++.+.++++++|+||..|.++...+-- .|+ |++|.+|-+
T Consensus 150 Pl~~k~~~s~~km~~lqPel~~Iq~Ky---k-~~~~d~~~~~k~q~e~~~Lykk~ginP~-~gclP~LiQ~Pif~aly~v 224 (357)
T PRK02201 150 LITFKSTFNQEKQEELQGKKAKIDAKY---K-DYKKDKQMKQRKQQEIQELYKKHNISPF-SPFVQMFVTLPIFIAVYRV 224 (357)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH---h-cccCCHHHHHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444422211 1 1235677789999999999998877633 343 555666655
Q ss_pred HHH
Q 041775 422 LIS 424 (432)
Q Consensus 422 li~ 424 (432)
+-+
T Consensus 225 l~~ 227 (357)
T PRK02201 225 VQS 227 (357)
T ss_pred HHh
Confidence 544
No 83
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.97 E-value=1.3e+02 Score=30.60 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHh
Q 041775 387 QEKKILKGELDTLR 400 (432)
Q Consensus 387 qe~~~Lq~El~~lr 400 (432)
.|-..||.++..|-
T Consensus 276 ~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 276 SEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 84
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=41.35 E-value=3.2e+02 Score=27.23 Aligned_cols=85 Identities=12% Similarity=0.124 Sum_probs=61.1
Q ss_pred CceEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeC---CC---------------CceeecCCceeecCCCeEE
Q 041775 4 QLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTT---SP---------------KKYCVRPNVGIILPKSTCD 65 (432)
Q Consensus 4 ~LLsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTT---SP---------------krY~VRPn~GII~PgeSv~ 65 (432)
--|.|.|-.+.+.. ..+..+.++|+|.++.+..++|+.- +| ..-.+.|..-+|.||++..
T Consensus 16 a~l~V~Pi~~~i~a--~~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~ 93 (234)
T PRK15308 16 ANMLVYPMAAEIGA--GREEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRT 93 (234)
T ss_pred ceEEEEEeEEEecC--CCcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEE
Confidence 34678887777653 2345789999999998887776521 22 1356788999999999999
Q ss_pred EEEEeccCccCCCCCCCCceEEEEEEEcCCC
Q 041775 66 FNVTMQAQAVAPPDMVCKDKFLIQSTVVPVG 96 (432)
Q Consensus 66 I~VTLqp~~~~P~D~q~kDKFLVQS~~Vp~g 96 (432)
|.+..... + + ...-|.|...+++..
T Consensus 94 IRli~lg~---~-~--kE~~YRl~~~pvp~~ 118 (234)
T PRK15308 94 VRVISLQA---P-E--REEAWRVYFEPVAEL 118 (234)
T ss_pred EEEEEcCC---C-C--cEEEEEEEEEecCCc
Confidence 99887653 2 1 345688888888753
No 85
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=40.88 E-value=70 Score=35.44 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
+|++.+..++++++.++.+++..+..+.++.....++.+.++.++..++
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544444444444555554443
No 86
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=40.81 E-value=1.2e+02 Score=27.91 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=24.2
Q ss_pred HHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHH
Q 041775 347 ELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDT 398 (432)
Q Consensus 347 ~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~ 398 (432)
...+..++.+|.+.+..+..++.+....+..++++-....++.+.+++.+..
T Consensus 132 l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 132 LDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444443
No 87
>PRK02463 OxaA-like protein precursor; Provisional
Probab=40.68 E-value=35 Score=35.01 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHhhccccccccc-C-------CcchhHHHHHH
Q 041775 386 IQEKKILKGELDTLRSKSVVKNVHV-G-------FPLLFVCMVAL 422 (432)
Q Consensus 386 ~qe~~~Lq~El~~lr~k~~~k~~~~-G-------Fpllfv~~val 422 (432)
-+++.+.|+||..|.|+....--.+ | +|++|.+|-|+
T Consensus 113 ~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai 157 (307)
T PRK02463 113 QEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAA 157 (307)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHH
Confidence 3567788999999998776652221 4 35555555554
No 88
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=40.28 E-value=97 Score=27.61 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
.+.+-+.+|...++.|-..+.+-+..|..|-||+-.-.-|++.|++-|..+..
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35566788888999999999999999999999999999999999999998843
No 89
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=40.11 E-value=88 Score=28.94 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=38.5
Q ss_pred hHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 345 AEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 345 ~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
.+..++..|.+|-+.-+..|+.++++.-.-...|..|-.+-..||+.|-+++...+
T Consensus 38 ~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 38 ENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888877777777777777666666666666666666666666665554
No 90
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.84 E-value=54 Score=27.03 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHh
Q 041775 388 EKKILKGELDTLR 400 (432)
Q Consensus 388 e~~~Lq~El~~lr 400 (432)
++..|++|...||
T Consensus 40 e~~~L~~en~~L~ 52 (72)
T PF06005_consen 40 ENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 91
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.08 E-value=67 Score=35.58 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhh----chHHHHHHHHHHHHHhhcccc------cccccCCcchhHH
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRL----GIQEKKILKGELDTLRSKSVV------KNVHVGFPLLFVC 418 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~----~~qe~~~Lq~El~~lr~k~~~------k~~~~GFpllfv~ 418 (432)
.+..+.+++..++..++..+++|+..+..|.++.+. -.++|+.|+.++..++..... +-....+||+|+-
T Consensus 220 ~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~ 299 (650)
T TIGR03185 220 EQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIP 299 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhH
Confidence 345556666666666666666666666666554432 345566666666555433222 2233467887764
No 92
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=39.05 E-value=28 Score=23.36 Aligned_cols=20 Identities=20% Similarity=0.662 Sum_probs=17.3
Q ss_pred HHHHHHHhhhhHhhhhhhhh
Q 041775 353 DIEEMKSKLNELQSKLSEAE 372 (432)
Q Consensus 353 d~~~l~~kl~~le~kl~ea~ 372 (432)
+++.++++...||.+|++..
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999998753
No 93
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=38.98 E-value=95 Score=34.44 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=40.8
Q ss_pred hhHHHhHHHHHHHHHHhhhhHhhhhhhhhhh---hhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 344 AAEELELVKDIEEMKSKLNELQSKLSEAEVT---ISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 344 ~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~---I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
+..-+-+-+|+++||+.+.+|..+..||+.+ |.-|+|--|+....-++++-=|--++
T Consensus 263 ~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk 322 (622)
T COG5185 263 EKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMK 322 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444567799999999999999999999865 55566666666655555555554444
No 94
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=37.95 E-value=1.2e+02 Score=34.88 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhccc
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSV 404 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~ 404 (432)
.+.+-...|+.+++..+.+|++...-+..+..|...-.+-+..|++|+..|++|=.
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667888888888888888888888888888888999999999999998643
No 95
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.81 E-value=51 Score=33.93 Aligned_cols=49 Identities=35% Similarity=0.489 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHH-------HHHHHHHHHHHh
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQE-------KKILKGELDTLR 400 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe-------~~~Lq~El~~lr 400 (432)
.|=.+|.=....|.-+|++-+.++.-|..|-+--+++ .+.|+.|++.||
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443333333 344445555554
No 96
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=37.78 E-value=1.4e+02 Score=30.80 Aligned_cols=51 Identities=35% Similarity=0.496 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhhhhh-----------hhhchHHHHHHHHHHHHHhh
Q 041775 351 VKDIEEMKSKLNELQSKLSEAEVTISKLTEE-----------NRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 351 ~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee-----------~~~~~qe~~~Lq~El~~lr~ 401 (432)
.+++++++..|+.+++++++....+..+.++ |--+..|-..|+.++..|.+
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333332 22344455556666665553
No 97
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.65 E-value=62 Score=36.24 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcc
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
.+..|++-.++=+++|++|-..-+..+.+|.+|=-.-.-|++.||++-+.|+++.
T Consensus 270 ~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 270 RLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888888777887777777777777777777777777777777777777543
No 98
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=37.33 E-value=1.4e+02 Score=29.75 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhhchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHH
Q 041775 329 AELKLMKELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKG 394 (432)
Q Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~ 394 (432)
.|+..+|+.+--.+-...+..+..++..|...|+.++.-|..=+..+.+|++--.....+...+++
T Consensus 6 ~~~~~~r~~~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~h 71 (243)
T PF07160_consen 6 KELLSLRNMGQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQH 71 (243)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666544443344678889999999999999999988888888888876666666556665
No 99
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=35.69 E-value=1.4e+02 Score=24.82 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=32.5
Q ss_pred CeeeEEEEEEcCCCCeEE-----EEEeeCCCCceeecC---------CceeecCCCeEEEEEEeccC
Q 041775 21 KQSSCSVRLTNNTHHYVA-----FKVKTTSPKKYCVRP---------NVGIILPKSTCDFNVTMQAQ 73 (432)
Q Consensus 21 kq~s~tLtLtN~Sd~~VA-----FKVKTTSPkrY~VRP---------n~GII~PgeSv~I~VTLqp~ 73 (432)
+-..-.++++|.++.++. |++.+..-..|.... ..+-|.||+++...|.+.-.
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp 102 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVP 102 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEES
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEEC
Confidence 345678999999987776 678876666666432 45899999999999988654
No 100
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=35.24 E-value=36 Score=26.39 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=27.1
Q ss_pred EEEEcCCCCeEEEE-EeeCCCC-ceeecCCceeecCCCeEEEEEEe
Q 041775 27 VRLTNNTHHYVAFK-VKTTSPK-KYCVRPNVGIILPKSTCDFNVTM 70 (432)
Q Consensus 27 LtLtN~Sd~~VAFK-VKTTSPk-rY~VRPn~GII~PgeSv~I~VTL 70 (432)
|++.|+|..+|.|- ++....+ .+.+ ...+.|.|+++..+.+.-
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~-~~~~mi~P~s~~~~~~~~ 45 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKI-DNSGMIAPFSSKSFPLPA 45 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEEC-CCETEE-TTEEEEEETST
T ss_pred CEEECCCCcEEEEEeeeeccccccccc-CCceEECCCCceEEeccC
Confidence 68999999999987 4444333 3344 444499999998876543
No 101
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=34.32 E-value=1.4e+02 Score=29.81 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcccccccccCCcchhHHHHHHHHHHhhhhc
Q 041775 390 KILKGELDTLRSKSVVKNVHVGFPLLFVCMVALISFVLGRLI 431 (432)
Q Consensus 390 ~~Lq~El~~lr~k~~~k~~~~GFpllfv~~vali~~~~g~~~ 431 (432)
.++-+|+.-||.....-.-| -.-.++-.+++..+++||||-
T Consensus 177 ~kId~Ev~~lk~qi~s~K~q-t~qw~~g~v~~~~Al~La~~r 217 (220)
T KOG3156|consen 177 TKIDQEVTNLKTQIESVKTQ-TIQWLIGVVTGTSALVLAYLR 217 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888766552234 345667777788888888873
No 102
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.95 E-value=1.3e+02 Score=27.60 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHhh
Q 041775 386 IQEKKILKGELDTLRS 401 (432)
Q Consensus 386 ~qe~~~Lq~El~~lr~ 401 (432)
.+|...|+..|..||.
T Consensus 122 ~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 122 EEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445666666666664
No 103
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=33.71 E-value=86 Score=27.94 Aligned_cols=50 Identities=22% Similarity=0.261 Sum_probs=39.8
Q ss_pred HHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhccc
Q 041775 355 EEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSV 404 (432)
Q Consensus 355 ~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~ 404 (432)
.++=.+|..||..+..--..|..|+..=-..+-|+..|+-|-+-||++-.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888888888888888888888888888887554
No 104
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=32.95 E-value=51 Score=28.72 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=27.8
Q ss_pred hhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcc
Q 041775 368 LSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 368 l~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
+.+.+.-|.+|+.+-+....|++.|++-++.+|+|.
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~ 108 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 334445577777777777789999999999999865
No 105
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=32.57 E-value=2e+02 Score=25.66 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.6
Q ss_pred CcchhHHHHHHHHHHhhhhc
Q 041775 412 FPLLFVCMVALISFVLGRLI 431 (432)
Q Consensus 412 Fpllfv~~vali~~~~g~~~ 431 (432)
=|---|.+-|-||++||.||
T Consensus 82 ~PWq~VGvaAaVGlllGlLl 101 (104)
T COG4575 82 NPWQGVGVAAAVGLLLGLLL 101 (104)
T ss_pred CCchHHHHHHHHHHHHHHHH
Confidence 37778899999999999987
No 106
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=32.39 E-value=1.4e+02 Score=25.38 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcc
Q 041775 351 VKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 351 ~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
...+..+.+.+.+||.|..-...-|.|=..+--.+-+.++.|..||..|+...
T Consensus 16 ~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~ 68 (96)
T PF08647_consen 16 SEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQL 68 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455566666677777777677777777777778888999999999998643
No 107
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=31.98 E-value=60 Score=31.70 Aligned_cols=44 Identities=32% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHHH--HHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHH
Q 041775 353 DIEE--MKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTL 399 (432)
Q Consensus 353 d~~~--l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~l 399 (432)
|-|+ |+-.|.+||.||+.|+....+- ++..-..-..+++|++.|
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqL 140 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQL 140 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHH
No 108
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=31.66 E-value=2.2e+02 Score=30.52 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=41.8
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCcee----------------------ecCCceeecCCCe
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYC----------------------VRPNVGIILPKST 63 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~----------------------VRPn~GII~PgeS 63 (432)
++++-..-+|.- .++..+-+++++|.++.+|-..==+|+.=+|. |.|+ +=|.||++
T Consensus 249 V~~~v~~A~Y~v-pgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRV-PGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGET 326 (381)
T ss_dssp EEEEEEEEEEES-SSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-E
T ss_pred eEEEEeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCce
Confidence 555555667765 46788999999999999998874344333332 2333 35899999
Q ss_pred EEEEEEeccC
Q 041775 64 CDFNVTMQAQ 73 (432)
Q Consensus 64 v~I~VTLqp~ 73 (432)
.++.|..|..
T Consensus 327 rtl~V~a~dA 336 (381)
T PF04744_consen 327 RTLTVEAQDA 336 (381)
T ss_dssp EEEEEEEE-H
T ss_pred EEEEEEeehh
Confidence 9999998753
No 109
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=31.14 E-value=76 Score=32.95 Aligned_cols=48 Identities=29% Similarity=0.453 Sum_probs=31.0
Q ss_pred HHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 354 IEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 354 ~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
..++..++.+++.+.+..+..+.+|..+.....++-+++++++..|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345555556666666666666666666666666777777777776663
No 110
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=30.95 E-value=56 Score=33.98 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhcccccccccC-------CcchhHHHHHHHH
Q 041775 389 KKILKGELDTLRSKSVVKNVHVG-------FPLLFVCMVALIS 424 (432)
Q Consensus 389 ~~~Lq~El~~lr~k~~~k~~~~G-------Fpllfv~~vali~ 424 (432)
++++++|+..|.|+...+-- .| +|++|.+|-+|-+
T Consensus 89 ~~~~~~e~~~Lykk~ginp~-~gclp~liQ~Pif~alf~~l~~ 130 (329)
T PRK01315 89 RERMSQEMMKLYKETGTNPL-SSCLPLLLQMPIFFALYRVLDS 130 (329)
T ss_pred HHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999988776632 23 4666777777654
No 111
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.88 E-value=79 Score=27.67 Aligned_cols=40 Identities=33% Similarity=0.412 Sum_probs=27.5
Q ss_pred HHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHH
Q 041775 357 MKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGEL 396 (432)
Q Consensus 357 l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El 396 (432)
|-..+..|+.++.++...+.+|+........+...|++|.
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666777777777777777777776666666666666653
No 112
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=30.67 E-value=1.6e+02 Score=29.90 Aligned_cols=76 Identities=22% Similarity=0.260 Sum_probs=53.7
Q ss_pred hchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcccccccccCCcchhHHHH
Q 041775 341 AGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHVGFPLLFVCMV 420 (432)
Q Consensus 341 ~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~k~~~~GFpllfv~~v 420 (432)
++-+.-+..-.++++.+++.|+..+.| ++..+.+|..+=..-.+.-++.|+||.+|+.-. ++ +||+--|++.
T Consensus 52 ~~i~~le~~~~~~l~~ak~eLqe~eek---~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYk----D~-EYPvK~vqIa 123 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQQAKAELQEWEEK---EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYK----DH-EYPVKAVQIA 123 (258)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hh-hhhHHHHHHH
Confidence 343444445556777777777777655 356677777777777777788899999998743 44 8999998887
Q ss_pred HHHH
Q 041775 421 ALIS 424 (432)
Q Consensus 421 ali~ 424 (432)
.|..
T Consensus 124 ~L~r 127 (258)
T PF15397_consen 124 NLVR 127 (258)
T ss_pred HHHH
Confidence 7653
No 113
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=30.67 E-value=89 Score=30.97 Aligned_cols=48 Identities=27% Similarity=0.325 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhHhhhhhh----h-------hhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 353 DIEEMKSKLNELQSKLSE----A-------EVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 353 d~~~l~~kl~~le~kl~e----a-------~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
.++||+-+|=--...|+- | +..|.+|.+==+.++||||..+..+..|.
T Consensus 2 s~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 2 SMEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666433333322 3 34445566667889999999999998877
No 114
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=30.54 E-value=1.8e+02 Score=27.94 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhh-------hhhhhhhchHHHHHHHHHHHHH
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTISK-------LTEENRLGIQEKKILKGELDTL 399 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I~k-------L~Ee~~~~~qe~~~Lq~El~~l 399 (432)
..|..||..+..|..+....+..+.- |+|-=....+|+..|+++|...
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554444444 4444444555555555555543
No 115
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.44 E-value=1e+02 Score=31.54 Aligned_cols=44 Identities=30% Similarity=0.382 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHH
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGE 395 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~E 395 (432)
+.+++|...-..++..+++.+....+|.++-..--++.+.++.+
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~ 107 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLE 107 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444433333334444444433
No 116
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=30.06 E-value=91 Score=28.74 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHH
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTL 399 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~l 399 (432)
.+..+.+.|+..|...+..+.....-+.+++.+|....+++..|++.+..+
T Consensus 88 ~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~ 138 (177)
T PF13870_consen 88 FLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLL 138 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 445556666666666666666666666666666666555555555554443
No 117
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.72 E-value=92 Score=31.90 Aligned_cols=52 Identities=29% Similarity=0.342 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
..+.+.+.|+.+.+..+.||.-|+.+|.-|..|+-+=.+..+.|++.+..|-
T Consensus 260 ~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~ 311 (344)
T PF12777_consen 260 EAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLV 311 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccH
Confidence 3456677788888888999999999999999999999888888888887764
No 118
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=29.29 E-value=88 Score=29.02 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=14.7
Q ss_pred HHHHHHhhhhHhhhhhhhhhhhhhhhh
Q 041775 354 IEEMKSKLNELQSKLSEAEVTISKLTE 380 (432)
Q Consensus 354 ~~~l~~kl~~le~kl~ea~~~I~kL~E 380 (432)
+...++.+++++..|.+|..+|-.|+.
T Consensus 22 ~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 22 VDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555555554
No 119
>PF15456 Uds1: Up-regulated During Septation
Probab=28.96 E-value=1.9e+02 Score=26.13 Aligned_cols=58 Identities=29% Similarity=0.290 Sum_probs=40.7
Q ss_pred hHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhh------------------hhhhhchHHHHHHHHHHHHHhhcc
Q 041775 345 AEELELVKDIEEMKSKLNELQSKLSEAEVTISKLT------------------EENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 345 ~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~------------------Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
.+...+..=++-++.||+ ||+|++.|-..|++|. ||.-...+--+.+..||..+.++.
T Consensus 29 kEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~ 104 (124)
T PF15456_consen 29 KELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENRL 104 (124)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 355567778888999998 9999999999999982 333344444455666666665543
No 120
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.73 E-value=1.6e+02 Score=24.29 Aligned_cols=44 Identities=30% Similarity=0.299 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
+++-|+-|+.++..|..|-.+.. +++..=-+|+++|++|-...+
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34444445554444444433333 344444445555555554443
No 121
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=28.64 E-value=3.7e+02 Score=29.59 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=65.9
Q ss_pred HhhhchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcccccccccCCcchhH
Q 041775 338 EFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHVGFPLLFV 417 (432)
Q Consensus 338 ~~~~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~k~~~~GFpllfv 417 (432)
+..+.+...-..+.+..+++..+|+.++....+-...|..|+.+-..+.+.-+.++..|..++|..... ..-|.|=-|.
T Consensus 369 ~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~-~lpgip~~y~ 447 (569)
T PRK04778 369 ERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKS-NLPGLPEDYL 447 (569)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHH
Confidence 344555555667778888888889999988888999999999888888888888888988888644333 4449998888
Q ss_pred HHHHHHHH
Q 041775 418 CMVALISF 425 (432)
Q Consensus 418 ~~vali~~ 425 (432)
-+..-+.-
T Consensus 448 ~~~~~~~~ 455 (569)
T PRK04778 448 EMFFEVSD 455 (569)
T ss_pred HHHHHHHH
Confidence 77665443
No 122
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=28.04 E-value=2.3e+02 Score=25.15 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=42.7
Q ss_pred HHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcccccccccCCcchhHHHHHHHHH
Q 041775 346 EELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHVGFPLLFVCMVALISF 425 (432)
Q Consensus 346 ~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~k~~~~GFpllfv~~vali~~ 425 (432)
-...+-.|-+.+..+|+..+-.+.--+..-.||.--=..-.+|| .+-+|+...-+|... =+=.-+.||||+
T Consensus 12 Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~reR-e~dee~k~~n~Knir--------~~KmwilGlvgT 82 (98)
T PF11166_consen 12 RIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRER-EEDEENKKKNDKNIR--------DIKMWILGLVGT 82 (98)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHhhHH--------HHHHHHHHHHHH
Confidence 34467788899999999988887776666666542222222222 222233222222211 112346678888
Q ss_pred Hhhhhc
Q 041775 426 VLGRLI 431 (432)
Q Consensus 426 ~~g~~~ 431 (432)
.+|-|+
T Consensus 83 i~gsli 88 (98)
T PF11166_consen 83 IFGSLI 88 (98)
T ss_pred HHHHHH
Confidence 877765
No 123
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=28.03 E-value=1.3e+02 Score=32.59 Aligned_cols=38 Identities=26% Similarity=0.481 Sum_probs=33.7
Q ss_pred hhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhh
Q 041775 343 KAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTE 380 (432)
Q Consensus 343 ~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~E 380 (432)
++.....|++.|++|+.-+..|+.||.||+.....|-.
T Consensus 342 rD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~ 379 (421)
T KOG2685|consen 342 RDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVN 379 (421)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999998854
No 124
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=28.03 E-value=2.2e+02 Score=23.23 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhccccc
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVK 406 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~k 406 (432)
+-..+++.+..+..==.|+-+=+..|.-|.+.....-++-+..++.=..|||+.--+
T Consensus 8 i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~ 64 (89)
T PF00957_consen 8 IQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWR 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333444444333322233333444444444444444444445555555555544333
No 125
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.95 E-value=1.5e+02 Score=30.02 Aligned_cols=51 Identities=25% Similarity=0.501 Sum_probs=40.1
Q ss_pred HhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 348 LELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 348 ~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
+.+.+++-.++.|++.|.++.+..+..+...+ |.-..-...|+.+++.||.
T Consensus 53 ~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~---~~~~t~~~~ie~~l~~l~~ 103 (247)
T COG3879 53 LDLVKELRSLQKKVNTLAAEVEDLENKLDSVR---RSVLTDDAALEDRLEKLRM 103 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHHHHHHHHHHHHH
Confidence 37788888888999999999999988888877 4444445567778999985
No 126
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=27.61 E-value=2.4e+02 Score=27.08 Aligned_cols=53 Identities=30% Similarity=0.313 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcc
Q 041775 351 VKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 351 ~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
..+.+.-|..|.++.+++...+..|..|+-|...-.|.-.+|++|-+.|+++-
T Consensus 78 L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 78 LKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677788888999999999999999999999999999999998754
No 127
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=27.60 E-value=57 Score=30.69 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=26.2
Q ss_pred EEEeeCCCCceeecCCcee--ecCCCeEEEEEEecc
Q 041775 39 FKVKTTSPKKYCVRPNVGI--ILPKSTCDFNVTMQA 72 (432)
Q Consensus 39 FKVKTTSPkrY~VRPn~GI--I~PgeSv~I~VTLqp 72 (432)
|+|.-=+-+.|++.|.-|+ |.||+++.|.+.-..
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 7788878899999999998 899999999998654
No 128
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=27.52 E-value=1.1e+02 Score=25.49 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=41.2
Q ss_pred hHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcccccccc
Q 041775 345 AEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVH 409 (432)
Q Consensus 345 ~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~k~~~ 409 (432)
..+..+-+++.-|+..+..|...+..-.. ..+.+.|..|.+||..|-++.-.|+.|
T Consensus 17 ~vl~~LqDE~~hm~~e~~~L~~~~~~~d~---------s~~~~~R~~L~~~l~~lv~~mE~K~dQ 72 (79)
T PF06657_consen 17 EVLKALQDEFGHMKMEHQELQDEYKQMDP---------SLGRRKRRDLEQELEELVKRMEAKADQ 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc---------ccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888888766654333 456788899999999888777777666
No 129
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=27.30 E-value=59 Score=26.19 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcccccccccCCcchhHHHHHHHHHHhhhh
Q 041775 392 LKGELDTLRSKSVVKNVHVGFPLLFVCMVALISFVLGRL 430 (432)
Q Consensus 392 Lq~El~~lr~k~~~k~~~~GFpllfv~~vali~~~~g~~ 430 (432)
-++|+..||.=|..+++-..-=+.-...++++|.++|++
T Consensus 26 ~~~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~ 64 (121)
T PF02687_consen 26 RRREIAILRALGASKRQIRKMFLYEALLIALIGILIGIL 64 (121)
T ss_pred HHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 368999999888887666444444555666666666643
No 130
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=27.22 E-value=1.9e+02 Score=28.50 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHH-------HHHHHHHHHHh
Q 041775 351 VKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEK-------KILKGELDTLR 400 (432)
Q Consensus 351 ~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~-------~~Lq~El~~lr 400 (432)
..+++.++.|+.........++..|.+|+.+-...+..| ..|++||.+++
T Consensus 81 ~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 81 KEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444456666777775555444443 44556666655
No 131
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=26.29 E-value=3.2e+02 Score=29.54 Aligned_cols=67 Identities=9% Similarity=0.093 Sum_probs=43.9
Q ss_pred eeeEEEEEEcCCCCeEEEEEeeCCCCceeec-C-CceeecCCCeEEEEEEeccCccCCCCCCCCceEEEEE
Q 041775 22 QSSCSVRLTNNTHHYVAFKVKTTSPKKYCVR-P-NVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKFLIQS 90 (432)
Q Consensus 22 q~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VR-P-n~GII~PgeSv~I~VTLqp~~~~P~D~q~kDKFLVQS 90 (432)
.-..+++|.|.+.++..|.++........+. + +.=.|.||+..++.|++........ ...+.|.|..
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~~~~--~~~~~i~~~v 415 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPDALK--SGITSIEIRA 415 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechhhcc--CCceeEEEEE
Confidence 3477899999999888888887654333332 2 3458999999998888765532221 1344455544
No 132
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=26.20 E-value=2.5e+02 Score=29.65 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=26.8
Q ss_pred HhHHHHHHHHHHhhhhHhhhhhhh------------hhhhhhhhhhhh-hchHHHHHHHHHHHHHh
Q 041775 348 LELVKDIEEMKSKLNELQSKLSEA------------EVTISKLTEENR-LGIQEKKILKGELDTLR 400 (432)
Q Consensus 348 ~~~~~d~~~l~~kl~~le~kl~ea------------~~~I~kL~Ee~~-~~~qe~~~Lq~El~~lr 400 (432)
..+..++.++++.++.+++.+.++ +.-+..|.++.+ ...++.+.++.++..++
T Consensus 239 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~ 304 (457)
T TIGR01000 239 ATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELE 304 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555543 344444444444 34445555555555544
No 133
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=26.17 E-value=3.6e+02 Score=24.55 Aligned_cols=50 Identities=26% Similarity=0.304 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHH-HHHHHHHHHH
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEK-KILKGELDTL 399 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~-~~Lq~El~~l 399 (432)
+...++.|+.........+......+.+|..++...-+|. +.+|.|++.|
T Consensus 39 l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDL 89 (136)
T PF04871_consen 39 LEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDL 89 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3344455555444444445555555555544444333333 5566666554
No 134
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=26.12 E-value=81 Score=31.20 Aligned_cols=40 Identities=35% Similarity=0.495 Sum_probs=34.4
Q ss_pred hhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 362 NELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 362 ~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
..|+.++.++...|.+|.+++...-.|...||+++..-|.
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588899999999999999999999999999999988776
No 135
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.12 E-value=2.9e+02 Score=26.55 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=9.1
Q ss_pred HHHHHHHHhhhhHhhhhhhhhh
Q 041775 352 KDIEEMKSKLNELQSKLSEAEV 373 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~ 373 (432)
+.++..+.++..+..+|+....
T Consensus 84 ~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 84 KRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 136
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.95 E-value=3.9e+02 Score=24.55 Aligned_cols=28 Identities=21% Similarity=0.416 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhhhh
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTISKLT 379 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I~kL~ 379 (432)
++.+..+.++..++....+....+..|.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555
No 137
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.79 E-value=1.9e+02 Score=29.50 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k 402 (432)
..+..++.++..+..+|.+.+.....|+++......++..++.|+..+.+.
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555555555555566666666666666543
No 138
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=25.70 E-value=3.6e+02 Score=22.39 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=33.8
Q ss_pred EEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEe-ccCc
Q 041775 7 EIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTM-QAQA 74 (432)
Q Consensus 7 sIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTL-qp~~ 74 (432)
..+|++++... ++ .-.|+++|.++..-.|-+.. +.+ ...|.||++..+.++- .++.
T Consensus 31 ~f~P~~i~v~~--G~--~v~l~~~N~~~~~h~~~i~~-----~~~---~~~l~~g~~~~~~f~~~~~G~ 87 (104)
T PF13473_consen 31 GFSPSTITVKA--GQ--PVTLTFTNNDSRPHEFVIPD-----LGI---SKVLPPGETATVTFTPLKPGE 87 (104)
T ss_dssp EEES-EEEEET--TC--EEEEEEEE-SSS-EEEEEGG-----GTE---EEEE-TT-EEEEEEEE-S-EE
T ss_pred eEecCEEEEcC--CC--eEEEEEEECCCCcEEEEECC-----Cce---EEEECCCCEEEEEEcCCCCEE
Confidence 56777777653 22 34699999988888887755 112 1689999999999853 4443
No 139
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=25.43 E-value=77 Score=26.92 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhhHhhhhhhhhhhh
Q 041775 351 VKDIEEMKSKLNELQSKLSEAEVTI 375 (432)
Q Consensus 351 ~~d~~~l~~kl~~le~kl~ea~~~I 375 (432)
.+|+.+++.||+.+|.|.|-+-+-|
T Consensus 14 ~~d~~~i~~rLD~iEeKVEftn~Ei 38 (77)
T PRK01026 14 PKDFKEIQKRLDEIEEKVEFTNAEI 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999876544
No 140
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=25.28 E-value=1.9e+02 Score=23.14 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=30.0
Q ss_pred hhchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhh
Q 041775 340 KAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTE 380 (432)
Q Consensus 340 ~~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~E 380 (432)
+...-......++.|..|+..+..|...|.+-...|.+|.+
T Consensus 46 V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~~ 86 (87)
T PF08700_consen 46 VYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQE 86 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444556677788888888888888888888877777764
No 141
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.25 E-value=2.1e+02 Score=29.45 Aligned_cols=51 Identities=27% Similarity=0.279 Sum_probs=34.7
Q ss_pred hhhchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHH
Q 041775 339 FKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKK 390 (432)
Q Consensus 339 ~~~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~ 390 (432)
+..++ ..+..+-.+++.++.+|++++..|++-+..|...+++......+-.
T Consensus 206 L~~lk-~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 206 LDRAK-EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344 4455667788888888888888888888888877665544333333
No 142
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.11 E-value=1.4e+02 Score=35.82 Aligned_cols=72 Identities=25% Similarity=0.404 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhchhhHHHhHHHH--------HHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 329 AELKLMKELEFKAGKAAEELELVKD--------IEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~~~d--------~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
.|+..||. ++.+++..+-.++.+| .+++..++..|+.+|+..+..|..|+|--......+..|+.+++.|.
T Consensus 411 ~EIerLK~-dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k 489 (1041)
T KOG0243|consen 411 EEIERLKR-DLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLK 489 (1041)
T ss_pred HHHHHHHH-HHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444433 3556655554444433 34666667777777777777777777766655556666666666655
Q ss_pred h
Q 041775 401 S 401 (432)
Q Consensus 401 ~ 401 (432)
.
T Consensus 490 ~ 490 (1041)
T KOG0243|consen 490 S 490 (1041)
T ss_pred H
Confidence 4
No 143
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.51 E-value=1.8e+02 Score=27.71 Aligned_cols=54 Identities=31% Similarity=0.457 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhh---hhhhhchHHHHHHHHHHHHHhhccc
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLT---EENRLGIQEKKILKGELDTLRSKSV 404 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~---Ee~~~~~qe~~~Lq~El~~lr~k~~ 404 (432)
.+...+..|+.+.+.|+.++.+....+..+. ++++ ..+.++.+.|++.|++.+.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~--~~~~k~~~~ei~~lk~~~~ 180 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELR--QEEEKKHQEEIDFLKKQNQ 180 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554433333322 1222 2345677899999997543
No 144
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=24.37 E-value=2.2e+02 Score=29.17 Aligned_cols=40 Identities=23% Similarity=0.077 Sum_probs=30.2
Q ss_pred hhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcccc
Q 041775 366 SKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVV 405 (432)
Q Consensus 366 ~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~ 405 (432)
.-.+|.+.-++.|+++.+.-..|....+.++..+|++..+
T Consensus 202 ~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~ 241 (264)
T PF07246_consen 202 ILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISD 241 (264)
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344556667778888888888888888899999876554
No 145
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.34 E-value=1.6e+02 Score=31.12 Aligned_cols=27 Identities=37% Similarity=0.421 Sum_probs=12.3
Q ss_pred hhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 374 TISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 374 ~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
++.+|.+.+....++.+.|+.++..|+
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 146
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.24 E-value=95 Score=34.08 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=9.5
Q ss_pred HhhhhHhhhhhhhhhhhhhhh
Q 041775 359 SKLNELQSKLSEAEVTISKLT 379 (432)
Q Consensus 359 ~kl~~le~kl~ea~~~I~kL~ 379 (432)
++|...+.|++|.|..|.+|+
T Consensus 69 SALteqQ~kasELEKqLaaLr 89 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 147
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=24.22 E-value=2.4e+02 Score=34.08 Aligned_cols=57 Identities=25% Similarity=0.379 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHhhhchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhh
Q 041775 326 KKDAELKLMKELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRL 384 (432)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~ 384 (432)
+++|.++-++| -+++++.+.-...+|+..++++.|.++.+..+++.-|.+++.+.+.
T Consensus 320 eiea~i~~~~~--e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~ 376 (1074)
T KOG0250|consen 320 EIEAKIGELKD--EVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDR 376 (1074)
T ss_pred HHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665544 4778888888999999999999999999999988888888776543
No 148
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=24.10 E-value=92 Score=27.40 Aligned_cols=63 Identities=29% Similarity=0.264 Sum_probs=35.5
Q ss_pred hhhchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 339 FKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 339 ~~~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
..|.=+.++..=++.+.+.-.+++.-+..|-+.+..|.+|..+-.......+.|.++|+.+..
T Consensus 23 iin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~ 85 (116)
T PF05064_consen 23 IINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEA 85 (116)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666677889999999999999999999999999999999999999999999999875
No 149
>PRK11546 zraP zinc resistance protein; Provisional
Probab=23.86 E-value=2.4e+02 Score=26.32 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=33.2
Q ss_pred ccCCcchHHHHHHHHHHHhhhchhhHHHhHHHHHHHHHHhhhhHhhhhhh-------hhhhhhhhhhhhhhchHHHHHHH
Q 041775 321 EELQPKKDAELKLMKELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSE-------AEVTISKLTEENRLGIQEKKILK 393 (432)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~~l~~kl~~le~kl~e-------a~~~I~kL~Ee~~~~~qe~~~Lq 393 (432)
+++.|++-+.+..+.+. ...+.+.|+.+|-.-...|+- -+..|.+|..| -..|+
T Consensus 42 ~~LT~EQQa~~q~I~~~------------f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kE-------I~~Lr 102 (143)
T PRK11546 42 APLTTEQQAAWQKIHND------------FYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKE-------MENLR 102 (143)
T ss_pred ccCCHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------HHHHH
Confidence 45677777777665554 445555555555444443332 34556666543 34455
Q ss_pred HHHHHHhh
Q 041775 394 GELDTLRS 401 (432)
Q Consensus 394 ~El~~lr~ 401 (432)
..|..+|-
T Consensus 103 ~kL~e~r~ 110 (143)
T PRK11546 103 QSLDELRV 110 (143)
T ss_pred HHHHHHHH
Confidence 55554443
No 150
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.82 E-value=1.8e+02 Score=26.22 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=26.4
Q ss_pred HHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHH
Q 041775 354 IEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTL 399 (432)
Q Consensus 354 ~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~l 399 (432)
|+.|.|.|..+|..+.-...-|.+|..+|....+|-=.|-.+.+.+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777666666666666555544444444444444433
No 151
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=23.53 E-value=2.9e+02 Score=25.70 Aligned_cols=14 Identities=14% Similarity=0.607 Sum_probs=6.1
Q ss_pred CcchhHHHHHHHHH
Q 041775 412 FPLLFVCMVALISF 425 (432)
Q Consensus 412 Fpllfv~~vali~~ 425 (432)
++++|.|+..++|+
T Consensus 159 ~g~i~~~~a~~la~ 172 (177)
T PF07798_consen 159 VGVIFGCVALVLAI 172 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 152
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=23.51 E-value=2.6e+02 Score=31.35 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
+|+-..-..|+++++++.-+..-|.+|.+|-..--+|+..|..+|..+|.
T Consensus 141 e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 141 EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 56666778888888888888888999988888888888888877777764
No 153
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=23.02 E-value=1.2e+02 Score=31.71 Aligned_cols=57 Identities=32% Similarity=0.529 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcccccc--cccCCcc
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKN--VHVGFPL 414 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~k~--~~~GFpl 414 (432)
+..-|+++..+++.||..+++.+..+..+ .++...|.+-|+.|-.+..+-. .. |||=
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~-------~k~i~~l~~kl~DlEnrsRRnNiRIi-GiPE 200 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKEL-------EKRIKKLEDKLDDLENRSRRNNIRII-GIPE 200 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTEEEEE-S---
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHhhccCCceeEE-ecCC
Confidence 33444444444444444444444444332 2334456666776644332211 23 7773
No 154
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=22.62 E-value=95 Score=25.98 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhhHhhhhhhhhhhh
Q 041775 351 VKDIEEMKSKLNELQSKLSEAEVTI 375 (432)
Q Consensus 351 ~~d~~~l~~kl~~le~kl~ea~~~I 375 (432)
.+|..++..||+.+|.|+|-+.+-|
T Consensus 11 ~~~~~~i~~rLd~iEeKvEf~~~Ei 35 (70)
T PF04210_consen 11 PDDFNEIMKRLDEIEEKVEFTNAEI 35 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4789999999999999999876654
No 155
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.52 E-value=2.9e+02 Score=27.44 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=6.6
Q ss_pred hhhhhhhhhhhhhchH
Q 041775 372 EVTISKLTEENRLGIQ 387 (432)
Q Consensus 372 ~~~I~kL~Ee~~~~~q 387 (432)
|.+|..++.||+...+
T Consensus 66 E~iIkqa~~er~~~~~ 81 (230)
T PF10146_consen 66 ENIIKQAESERNKRQE 81 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 156
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=22.45 E-value=48 Score=36.57 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=18.3
Q ss_pred CCcchhHHHHHHHHHHhhhhc
Q 041775 411 GFPLLFVCMVALISFVLGRLI 431 (432)
Q Consensus 411 GFpllfv~~vali~~~~g~~~ 431 (432)
--|++||||++|+|+.|-|..
T Consensus 192 ~s~y~~v~Y~lllGv~LPy~v 212 (610)
T COG5407 192 RSMYAFVMYSLLLGVFLPYWV 212 (610)
T ss_pred CCceeHHHHHHHHHHHHHHHH
Confidence 358999999999999998864
No 157
>PHA02562 46 endonuclease subunit; Provisional
Probab=22.34 E-value=4.7e+02 Score=27.81 Aligned_cols=12 Identities=17% Similarity=-0.133 Sum_probs=6.6
Q ss_pred cCCccccccccC
Q 041775 312 NLPKEVVNGEEL 323 (432)
Q Consensus 312 ~~p~~~~~~~~~ 323 (432)
.||----.+++.
T Consensus 286 ~Cp~C~~~~~~~ 297 (562)
T PHA02562 286 VCPTCTQQISEG 297 (562)
T ss_pred CCCCCCCcCCCc
Confidence 466655555544
No 158
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.33 E-value=2e+02 Score=29.34 Aligned_cols=47 Identities=32% Similarity=0.350 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHH
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGEL 396 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El 396 (432)
+.+..++|.++++.++-.|.+-+.--++|.|.++.-.-|--.|+.-+
T Consensus 154 L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 44445555555555555555555555555555544444444444333
No 159
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=22.28 E-value=3.7e+02 Score=24.27 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhh
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTI 375 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I 375 (432)
.+.+.+......|.++|+.|+..|
T Consensus 90 ~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 90 CENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777888888888
No 160
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.07 E-value=8.4e+02 Score=25.23 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=11.5
Q ss_pred chhHHHHHHHHHHhhhh
Q 041775 414 LLFVCMVALISFVLGRL 430 (432)
Q Consensus 414 llfv~~vali~~~~g~~ 430 (432)
.+++.+.+++|+++|..
T Consensus 397 ~~~l~~~~~~Gl~lg~~ 413 (444)
T TIGR03017 397 LLNLVLSIFLGMLLGIG 413 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666667777777764
No 161
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=22.06 E-value=4e+02 Score=23.86 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=23.6
Q ss_pred hHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhc
Q 041775 345 AEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLG 385 (432)
Q Consensus 345 ~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~ 385 (432)
.....+-.|++.|+..+..|+.++++++.-+.-+.+.-+..
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQL 99 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666666665444443333
No 162
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=21.86 E-value=1.5e+02 Score=31.32 Aligned_cols=42 Identities=26% Similarity=0.278 Sum_probs=23.9
Q ss_pred hhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 360 KLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 360 kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
++..|+.+++..+..+.+|+++.....+|..+++.|+..|+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 23 KLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333344444444444455555555555667778888888763
No 163
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.83 E-value=1.7e+02 Score=33.52 Aligned_cols=53 Identities=25% Similarity=0.321 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
.|-.|++.||+.|.-+..-=+|....|+-|+...|..-.|-+.||+|.+.|..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444444555555555444444444444444444443
No 164
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.75 E-value=2.1e+02 Score=26.16 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=8.8
Q ss_pred chHHHHHHHHHHHHHh
Q 041775 385 GIQEKKILKGELDTLR 400 (432)
Q Consensus 385 ~~qe~~~Lq~El~~lr 400 (432)
+..|++++.++...++
T Consensus 143 s~ee~~~~~~~~~~~~ 158 (169)
T PF07106_consen 143 SPEEKEKLEKEYKKWR 158 (169)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3445666666655554
No 165
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=21.52 E-value=1.2e+02 Score=26.63 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=32.4
Q ss_pred HHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHH
Q 041775 346 EELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGEL 396 (432)
Q Consensus 346 ~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El 396 (432)
....+..++.+++.++.....++..+...|...-++|+.-..+|..|+.-+
T Consensus 70 ~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~~l 120 (133)
T PF06148_consen 70 KIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEKALLKLLL 120 (133)
T ss_dssp ----HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHHHT-SSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777777777777777776666666555433
No 166
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.33 E-value=2.9e+02 Score=33.84 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=24.6
Q ss_pred hhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 367 KLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 367 kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
++.+++.-+-+|+.+-++.-+....+.|+++.+|.
T Consensus 557 e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 557 ELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55557777777777777777777777777777664
No 167
>PRK02944 OxaA-like protein precursor; Validated
Probab=21.32 E-value=1.2e+02 Score=30.09 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHhhcccccccccC-------CcchhHHHHHHHH
Q 041775 386 IQEKKILKGELDTLRSKSVVKNVHVG-------FPLLFVCMVALIS 424 (432)
Q Consensus 386 ~qe~~~Lq~El~~lr~k~~~k~~~~G-------Fpllfv~~vali~ 424 (432)
.++++++|+|+..|.|+...+-- .| +|++|.+|-++-+
T Consensus 107 ~~~~~k~~~e~~~Lyk~~gvnP~-~g~lp~liQ~Pifi~lf~~i~~ 151 (255)
T PRK02944 107 QATQQKLQQEMMQLFQKNGVNPL-AGCLPIFIQMPILIAFYHAIMR 151 (255)
T ss_pred HHHHHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999987766522 23 4666666666543
No 168
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=21.21 E-value=2.1e+02 Score=28.16 Aligned_cols=39 Identities=33% Similarity=0.342 Sum_probs=25.9
Q ss_pred HhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 041775 364 LQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 364 le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k 402 (432)
.+..|.++...|..+.-|+.....+.+.|+.|++.||+|
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k 90 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRK 90 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHH
Confidence 455555666667777777777777777777777776653
No 169
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.20 E-value=70 Score=31.95 Aligned_cols=27 Identities=37% Similarity=0.567 Sum_probs=22.4
Q ss_pred HHHHHhhhhHhhhhhhhhhhhhhhhhh
Q 041775 355 EEMKSKLNELQSKLSEAEVTISKLTEE 381 (432)
Q Consensus 355 ~~l~~kl~~le~kl~ea~~~I~kL~Ee 381 (432)
++|+.+|..+++++++.+.+|.||.+.
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~D 28 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLEND 28 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888889999999999998888543
No 170
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.01 E-value=2.8e+02 Score=32.85 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=25.7
Q ss_pred hhhhhhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 041775 371 AEVTISKLTEENRLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 371 a~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k 402 (432)
++..|.-++--|.++|-|++.||+++..+..|
T Consensus 470 ~kt~ie~~~~q~e~~isei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 470 QKTEIEEVTKQRELMISEIDQLQARIKELQEK 501 (1118)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888889999999999988876643
No 171
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.96 E-value=4.3e+02 Score=25.19 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=40.0
Q ss_pred CCeeeEEEEEEcCCCCeEEEEEeeCC----CCceeecC-----CceeecCCCeEEEEEEeccCc
Q 041775 20 KKQSSCSVRLTNNTHHYVAFKVKTTS----PKKYCVRP-----NVGIILPKSTCDFNVTMQAQA 74 (432)
Q Consensus 20 ~kq~s~tLtLtN~Sd~~VAFKVKTTS----PkrY~VRP-----n~GII~PgeSv~I~VTLqp~~ 74 (432)
++..+..++|+|..+. -||.|+=+. ++.|-+-- +...|.||+.+.-.+++.|..
T Consensus 37 g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~ 99 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK 99 (181)
T ss_pred CcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee
Confidence 5677899999999665 799999776 34555422 236888999888888887753
No 172
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=20.86 E-value=2.1e+02 Score=24.73 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=37.9
Q ss_pred hHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHH
Q 041775 345 AEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKK 390 (432)
Q Consensus 345 ~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~ 390 (432)
...-+|..||+.|++|.+.+.+....|...+..-++|=-.+.|--|
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4666789999999999999999999999999888887665555433
No 173
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=20.78 E-value=79 Score=21.94 Aligned_cols=21 Identities=19% Similarity=0.312 Sum_probs=8.6
Q ss_pred cccccCCcchhHHHHHHHHHH
Q 041775 406 KNVHVGFPLLFVCMVALISFV 426 (432)
Q Consensus 406 k~~~~GFpllfv~~vali~~~ 426 (432)
++.|.||-|+=+.++-.|+.+
T Consensus 10 ~~~~~GFTLiEllVa~~I~~i 30 (31)
T PF13544_consen 10 RRRQRGFTLIELLVAMAILAI 30 (31)
T ss_dssp --------HHHHHHHHHHHHH
T ss_pred ccccCCccHHHHHHHHHHHHH
Confidence 345559999987766555543
No 174
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=20.59 E-value=1.5e+02 Score=29.32 Aligned_cols=71 Identities=25% Similarity=0.325 Sum_probs=43.8
Q ss_pred cCCccccccccCCcchHHHHHHHHHHHhhhchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHH
Q 041775 312 NLPKEVVNGEELQPKKDAELKLMKELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKI 391 (432)
Q Consensus 312 ~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~ 391 (432)
..||..|.+|+..-+ |..+++-. ...+....+|-++|-+.-..|+..+..-+.-=.+|..||..-.++|..
T Consensus 7 RIPK~~Vs~Se~~~E----L~~~~~i~-----~e~e~~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~ 77 (228)
T PRK06800 7 RIPKNSVSFSEETYE----LQFPKPIE-----VEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQ 77 (228)
T ss_pred CCCCCcceeccceeE----EecCchhh-----HhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888865432 33333332 244566777888887777777766666555556666666655555544
No 175
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=20.52 E-value=71 Score=29.13 Aligned_cols=17 Identities=47% Similarity=0.725 Sum_probs=12.8
Q ss_pred chhHHHHHHHHHHhhhh
Q 041775 414 LLFVCMVALISFVLGRL 430 (432)
Q Consensus 414 llfv~~vali~~~~g~~ 430 (432)
|+|.-.|||||+|-|.|
T Consensus 71 LvfmTlVaLIgTMCgIL 87 (130)
T PF02960_consen 71 LVFMTLVALIGTMCGIL 87 (130)
T ss_pred eHHHHHHHHHHHHHHHH
Confidence 56777888888887764
No 176
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=20.50 E-value=5.4e+02 Score=27.18 Aligned_cols=16 Identities=19% Similarity=-0.037 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHhhhh
Q 041775 415 LFVCMVALISFVLGRL 430 (432)
Q Consensus 415 lfv~~vali~~~~g~~ 430 (432)
+++.+.+++|+++|..
T Consensus 415 ~~l~~g~~~Gl~lg~~ 430 (498)
T TIGR03007 415 LLMLAGLLGGLGAGIG 430 (498)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666666643
No 177
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=20.40 E-value=5.7e+02 Score=24.87 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=50.7
Q ss_pred HHHhhhchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHH-HHHHHHHHHHhh
Q 041775 336 ELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEK-KILKGELDTLRS 401 (432)
Q Consensus 336 ~~~~~~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~-~~Lq~El~~lr~ 401 (432)
+....+..+..+..++.=.+.++..+..|..++..-+..|..-+.+|+..|.+. ..|..+|..|+.
T Consensus 69 e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~ 135 (247)
T PF06705_consen 69 EEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQE 135 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 444555556666677777788888999999999999999999999999988765 467777777753
No 178
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.01 E-value=2.8e+02 Score=28.23 Aligned_cols=53 Identities=30% Similarity=0.390 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k 402 (432)
+.+.-++|-..|..||++++|-..-|.+|.-|.+.-...+++|-.|...||++
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r 199 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKR 199 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 44555566666777888888888888899888888888888888899998864
Done!