Query 041775
Match_columns 432
No_of_seqs 149 out of 648
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 18:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 2.5E-31 8.4E-36 235.3 18.3 124 4-131 13-137 (147)
2 1z9l_A Vesicle-associated memb 100.0 3.5E-31 1.2E-35 228.3 16.9 118 4-125 9-127 (128)
3 1wic_A Hypothetical protein ri 100.0 2E-31 6.7E-36 238.1 13.8 126 3-133 16-144 (152)
4 1msp_A MSP, major sperm protei 100.0 1.4E-28 4.6E-33 213.3 15.4 118 4-125 7-125 (126)
5 1row_A SSP-19, MSP-domain prot 99.9 4.5E-25 1.5E-29 188.3 15.0 104 6-123 3-106 (109)
6 1m1s_A WR4; structural genomic 99.9 2.3E-24 7.8E-29 186.5 14.6 106 4-123 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.0 2.2E-05 7.4E-10 66.2 9.1 75 10-90 29-104 (122)
8 3qbt_B Inositol polyphosphate 97.7 0.00021 7.3E-09 62.5 10.7 69 4-72 25-100 (140)
9 2e6j_A Hydin protein; PAPD, st 97.7 0.00013 4.3E-09 59.6 8.5 71 4-74 8-82 (112)
10 3qis_A Inositol polyphosphate 97.1 0.002 6.7E-08 64.2 10.4 71 3-73 27-104 (366)
11 2qsv_A Uncharacterized protein 95.3 0.059 2E-06 49.5 8.7 69 5-74 2-71 (220)
12 2qsv_A Uncharacterized protein 94.5 0.15 5.2E-06 46.8 9.1 69 4-74 118-187 (220)
13 3q48_A Chaperone CUPB2; IG fol 89.2 1.8 6.3E-05 41.4 9.7 84 6-95 30-123 (257)
14 2co7_B SAFB chaperone, putativ 88.9 2.7 9.2E-05 39.2 10.4 84 6-95 14-102 (221)
15 2xg5_A PAPD, chaperone protein 88.7 3.7 0.00013 38.1 11.3 85 6-95 2-95 (218)
16 3efg_A Protein SLYX homolog; x 86.9 0.83 2.8E-05 36.8 4.9 56 351-406 6-61 (78)
17 1klf_A FIMC chaperone, chapero 86.2 4.7 0.00016 37.1 10.3 84 6-95 2-92 (205)
18 4djm_A DRAB; chaperone, PILI; 85.1 4.8 0.00016 38.1 9.9 84 6-95 24-112 (239)
19 1l4i_A SFAE protein; periplasm 83.7 9.2 0.00032 35.1 11.0 84 6-95 2-92 (206)
20 4ay0_A Chaperone protein CAF1M 79.6 17 0.00058 33.9 11.3 84 6-95 14-104 (218)
21 3hnw_A Uncharacterized protein 79.2 6.1 0.00021 34.8 7.7 42 356-397 93-134 (138)
22 3gfu_C Chaperone protein FAEE; 78.0 14 0.00047 34.9 10.2 84 6-95 2-92 (224)
23 1yew_A Particulate methane mon 74.0 17 0.00058 37.2 10.1 70 3-74 247-338 (382)
24 3hnw_A Uncharacterized protein 71.5 7.5 0.00026 34.2 6.2 55 347-401 63-124 (138)
25 2r39_A FIXG-related protein; s 71.2 18 0.00061 30.0 8.2 51 23-73 33-84 (118)
26 3rfr_A PMOB; membrane, oxidore 62.8 31 0.0011 35.6 9.5 67 5-74 283-370 (419)
27 1lwu_C Fibrinogen gamma chain; 61.3 9.2 0.00032 38.1 5.2 53 350-402 3-55 (323)
28 3i00_A HIP-I, huntingtin-inter 60.8 22 0.00075 30.7 6.9 44 353-403 41-84 (120)
29 1gd2_E Transcription factor PA 58.3 10 0.00034 30.1 3.9 42 359-400 29-70 (70)
30 2eqb_B RAB guanine nucleotide 56.2 14 0.00049 31.1 4.8 47 354-400 7-60 (97)
31 1uix_A RHO-associated kinase; 55.3 22 0.00075 28.5 5.4 35 350-384 2-36 (71)
32 4etp_A Kinesin-like protein KA 55.2 15 0.0005 37.2 5.6 55 347-401 5-59 (403)
33 1wt6_A Myotonin-protein kinase 54.8 23 0.00078 29.1 5.6 42 355-403 34-75 (81)
34 2fxo_A Myosin heavy chain, car 52.7 50 0.0017 28.2 7.8 47 353-399 77-123 (129)
35 1l8d_A DNA double-strand break 52.4 13 0.00044 30.4 3.9 42 359-400 3-44 (112)
36 3m9b_A Proteasome-associated A 51.3 12 0.00042 36.2 4.1 41 361-401 56-96 (251)
37 3l4q_C Phosphatidylinositol 3- 49.7 15 0.00051 33.7 4.2 62 342-403 86-147 (170)
38 2fxo_A Myosin heavy chain, car 49.4 24 0.00083 30.1 5.3 47 352-398 13-59 (129)
39 3vkg_A Dynein heavy chain, cyt 49.3 22 0.00075 45.0 6.8 53 351-403 2020-2072(3245)
40 1vcs_A Vesicle transport throu 47.1 18 0.00063 29.9 4.0 38 355-392 34-72 (102)
41 1nlw_A MAD protein, MAX dimeri 46.3 17 0.00056 29.1 3.5 36 367-402 41-76 (80)
42 2jee_A YIIU; FTSZ, septum, coi 46.1 23 0.00078 29.0 4.3 12 387-398 55-66 (81)
43 1s1c_X RHO-associated, coiled- 44.2 42 0.0015 26.8 5.5 48 349-396 3-52 (71)
44 2qyw_A Vesicle transport throu 43.2 36 0.0012 28.1 5.3 46 355-400 45-91 (102)
45 1ic2_A Tropomyosin alpha chain 42.1 54 0.0018 25.9 5.9 49 350-398 11-59 (81)
46 3hhm_B NISH2 P85alpha; PI3KCA, 41.8 43 0.0015 33.7 6.5 62 340-401 193-254 (373)
47 3swk_A Vimentin; cytoskeleton, 41.3 68 0.0023 25.9 6.5 56 346-401 22-84 (86)
48 2oqq_A Transcription factor HY 41.1 22 0.00074 26.0 3.1 35 361-395 5-39 (42)
49 3ol1_A Vimentin; structural ge 40.8 1.4E+02 0.0049 25.1 8.7 53 349-401 45-104 (119)
50 1ic2_A Tropomyosin alpha chain 39.7 41 0.0014 26.6 4.8 16 386-401 33-48 (81)
51 3oja_B Anopheles plasmodium-re 38.6 24 0.00081 35.9 4.1 22 363-384 548-569 (597)
52 4emc_A Monopolin complex subun 37.2 20 0.00067 33.6 2.9 38 364-401 11-48 (190)
53 2dfs_A Myosin-5A; myosin-V, in 36.8 79 0.0027 35.9 8.3 33 352-384 977-1009(1080)
54 3oja_B Anopheles plasmodium-re 36.3 1.1E+02 0.0037 31.0 8.6 12 357-368 514-525 (597)
55 3isy_A Bsupi, intracellular pr 34.5 1.6E+02 0.0055 25.2 8.1 24 20-43 17-40 (120)
56 3htk_A Structural maintenance 33.9 99 0.0034 22.6 5.9 32 350-381 10-41 (60)
57 2zvf_A Alanyl-tRNA synthetase; 32.5 50 0.0017 28.5 4.7 48 369-416 28-77 (171)
58 2xze_Q Charged multivesicular 31.9 22 0.00074 25.7 1.8 15 352-366 26-40 (40)
59 3nmd_A CGMP dependent protein 31.7 76 0.0026 25.4 5.1 48 354-401 21-68 (72)
60 1a92_A Delta antigen; leucine 31.3 32 0.0011 25.9 2.6 27 356-382 11-37 (50)
61 3vkg_A Dynein heavy chain, cyt 31.0 97 0.0033 39.5 8.3 51 350-400 2054-2104(3245)
62 1jcd_A Major outer membrane li 29.8 94 0.0032 23.3 5.1 42 345-386 4-45 (52)
63 1m1j_C Fibrinogen gamma chain; 29.5 74 0.0025 32.6 6.0 53 349-401 81-133 (409)
64 3na7_A HP0958; flagellar bioge 28.1 1E+02 0.0035 28.7 6.3 32 350-381 116-147 (256)
65 3lay_A Zinc resistance-associa 28.0 1.6E+02 0.0056 26.7 7.4 17 321-337 66-82 (175)
66 2wt7_B Transcription factor MA 27.4 54 0.0019 27.2 3.7 38 363-400 52-89 (90)
67 2e7s_A RAB guanine nucleotide 27.2 72 0.0025 28.3 4.7 46 355-400 28-80 (135)
68 2dfs_A Myosin-5A; myosin-V, in 26.8 1.5E+02 0.005 33.8 8.2 38 364-401 1035-1077(1080)
69 3u1c_A Tropomyosin alpha-1 cha 25.7 1.1E+02 0.0037 25.2 5.3 8 363-370 27-34 (101)
70 3hn9_A Lamin-B1; structural ge 25.7 88 0.003 26.7 4.9 41 25-66 25-71 (123)
71 3u59_A Tropomyosin beta chain; 25.5 1.5E+02 0.005 24.2 6.1 54 349-402 41-94 (101)
72 3n7n_E Monopolin complex subun 25.4 15 0.00051 31.0 0.0 35 345-379 50-95 (95)
73 1i84_S Smooth muscle myosin he 24.9 60 0.002 36.9 4.7 30 352-381 920-949 (1184)
74 3u59_A Tropomyosin beta chain; 24.7 1.2E+02 0.004 24.8 5.3 23 355-377 19-41 (101)
75 2v71_A Nuclear distribution pr 24.5 2.6E+02 0.009 25.8 8.2 42 349-393 67-108 (189)
76 3ljm_A Coil Ser L9C; de novo d 24.3 61 0.0021 21.8 2.8 23 350-372 6-28 (31)
77 3idu_A Uncharacterized protein 24.1 1.7E+02 0.0058 25.0 6.5 68 20-96 32-100 (127)
78 3onj_A T-snare VTI1; helix, HA 24.0 1.2E+02 0.0042 24.6 5.3 40 355-394 30-72 (97)
79 2v71_A Nuclear distribution pr 23.8 1.9E+02 0.0064 26.8 7.0 54 348-401 45-102 (189)
80 3cl3_D NF-kappa-B essential mo 23.6 17 0.00057 32.2 -0.0 44 359-402 9-52 (130)
81 3hd7_B Syntaxin-1A; membrane p 23.4 2.4E+02 0.0083 23.2 7.1 55 342-396 18-72 (109)
82 2xv5_A Lamin-A/C; structural p 23.2 1.9E+02 0.0065 22.9 6.1 52 350-401 3-54 (74)
83 3azd_A Short alpha-tropomyosin 23.0 44 0.0015 23.3 2.0 28 354-381 6-33 (37)
84 3e38_A Two-domain protein cont 22.8 1.3E+02 0.0044 29.7 6.1 64 25-95 270-333 (343)
85 3u1c_A Tropomyosin alpha-1 cha 22.6 1.5E+02 0.0052 24.3 5.6 54 349-402 41-94 (101)
86 3na7_A HP0958; flagellar bioge 22.2 1.6E+02 0.0055 27.4 6.4 54 350-403 51-106 (256)
87 2lem_A Apolipoprotein A-I; lip 21.9 1.5E+02 0.0053 27.0 6.1 48 359-406 47-99 (216)
88 2v66_B Nuclear distribution pr 21.8 2.4E+02 0.0083 24.1 6.9 45 349-396 14-58 (111)
89 3a7p_A Autophagy protein 16; c 21.7 1.7E+02 0.0058 26.4 6.1 48 350-397 73-120 (152)
90 3u06_A Protein claret segregat 21.4 1.4E+02 0.0047 30.3 6.2 53 349-401 7-59 (412)
91 1nkp_B MAX protein, MYC proto- 21.0 80 0.0027 24.7 3.5 33 370-402 44-76 (83)
92 3s4r_A Vimentin; alpha-helix, 20.9 85 0.0029 25.7 3.7 38 365-402 55-92 (93)
93 2i1j_A Moesin; FERM, coiled-co 20.9 21 0.0007 37.7 0.0 38 364-401 410-447 (575)
94 1x8y_A Lamin A/C; structural p 20.9 73 0.0025 25.5 3.3 45 353-400 4-48 (86)
95 3q0x_A Centriole protein; cent 20.8 1.2E+02 0.0041 28.8 5.2 50 345-401 164-213 (228)
96 4etp_A Kinesin-like protein KA 20.1 93 0.0032 31.3 4.6 30 353-382 4-33 (403)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.97 E-value=2.5e-31 Score=235.26 Aligned_cols=124 Identities=32% Similarity=0.572 Sum_probs=113.3
Q ss_pred CceEEecC-eeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCCCCCCC
Q 041775 4 QLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVC 82 (432)
Q Consensus 4 ~LLsIdPs-EL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~q~ 82 (432)
++|.|+|. +|+|.++++++++|.|+|+|+++++||||||||+|++|+|||+.|+|.||+++.|.|+|+++...| +++|
T Consensus 13 ~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~~p-~~~~ 91 (147)
T 2cri_A 13 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDP-NEKS 91 (147)
T ss_dssp CCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCCCT-TCCS
T ss_pred CeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcCCc-cccC
Confidence 68999996 999999999999999999999999999999999999999999999999999999999999986655 4689
Q ss_pred CceEEEEEEEcCCCCCchhhHHhhhcccCCCcceEEEeEEEEeCCCCCC
Q 041775 83 KDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPPNSP 131 (432)
Q Consensus 83 kDKFLVQS~~Vp~gttd~Di~~e~WKk~sk~~I~E~KLrVvfv~p~~~~ 131 (432)
+|||+||++.++++.++ ..++|++..+..++++||||+|+.|++..
T Consensus 92 kDKFlVqs~~~~~~~~d---~~~~wk~~~~~~i~e~kLrv~f~~p~~~~ 137 (147)
T 2cri_A 92 KHKFMVQTIFAPPNISD---MEAVWKEAKPDELMDSKLRCVFEMPNEND 137 (147)
T ss_dssp CCCEEEEEEECCTTCCC---HHHHHHHSCTTTCEEEEEEEEEECSCCSS
T ss_pred CCEEEEEEEEcCCCccc---HHHHhhcCCCCceEEEEEEEEEecCCCCc
Confidence 99999999999976543 46899999889999999999999887653
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=99.97 E-value=3.5e-31 Score=228.31 Aligned_cols=118 Identities=32% Similarity=0.580 Sum_probs=108.7
Q ss_pred CceEEecC-eeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCCCCCCC
Q 041775 4 QLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVC 82 (432)
Q Consensus 4 ~LLsIdPs-EL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~q~ 82 (432)
++|.|+|. +|+|.+++++++++.|+|+|+++++||||||||+|++|+|||+.|+|.||+++.|.|+++++...| +.++
T Consensus 9 ~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~~p-~~~~ 87 (128)
T 1z9l_A 9 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYDP-NEKS 87 (128)
T ss_dssp CCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCCCT-TCCC
T ss_pred CeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcCCc-cccc
Confidence 68999996 999999999999999999999999999999999999999999999999999999999999986655 4689
Q ss_pred CceEEEEEEEcCCCCCchhhHHhhhcccCCCcceEEEeEEEEe
Q 041775 83 KDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILI 125 (432)
Q Consensus 83 kDKFLVQS~~Vp~gttd~Di~~e~WKk~sk~~I~E~KLrVvfv 125 (432)
+|||+||++.++++.++ ..++|++..+..++++||||+|.
T Consensus 88 ~dkF~V~s~~~~~~~~~---~~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 88 KHKFMVQTIFAPPNISD---MEAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp CCEEEEEEEECCTTCSC---HHHHHHSCCGGGCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcch---HHHHhhcCCCCceEEEEEEEEEe
Confidence 99999999999976543 46899999889999999999995
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=99.97 E-value=2e-31 Score=238.07 Aligned_cols=126 Identities=29% Similarity=0.408 Sum_probs=113.5
Q ss_pred CCceEEecC-eeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCCCCCC
Q 041775 3 KQLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMV 81 (432)
Q Consensus 3 s~LLsIdPs-EL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~q 81 (432)
.++|.|+|. +|+|.++++++++|.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+||++.. .+
T Consensus 16 ~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~~ 91 (152)
T 1wic_A 16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----VS 91 (152)
T ss_dssp CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----CC
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----CC
Confidence 468999997 8999999999999999999999999999999999999999999999999999999999999853 26
Q ss_pred CCceEEEEEEEcC--CCCCchhhHHhhhcccCCCcceEEEeEEEEeCCCCCCCc
Q 041775 82 CKDKFLIQSTVVP--VGTTDEDITASMFAKDDGRYIQENKLRVILISPPNSPVL 133 (432)
Q Consensus 82 ~kDKFLVQS~~Vp--~gttd~Di~~e~WKk~sk~~I~E~KLrVvfv~p~~~~~~ 133 (432)
++|||+||++.++ ++.+..|+ .++|++..+..++++||||+|+.+++++.+
T Consensus 92 ~kDKFlVqs~~v~~~~~~~~~d~-~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~ 144 (152)
T 1wic_A 92 AQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSL 144 (152)
T ss_dssp SSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSS
T ss_pred CCCEEEEEEEEcCCcCCCChhhH-HHHHhccCCCceEEEEEEEEECCCCCCCCc
Confidence 8999999999998 45444555 589999988999999999999998887533
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.96 E-value=1.4e-28 Score=213.25 Aligned_cols=118 Identities=20% Similarity=0.359 Sum_probs=104.9
Q ss_pred CceEEecC-eeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCCCCCCC
Q 041775 4 QLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVC 82 (432)
Q Consensus 4 ~LLsIdPs-EL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~q~ 82 (432)
..|.++|. +|.|.++++++.+|.|+|+|+|+++||||||||+|++|||||++|+|.||+++.|.|+||++...|++. .
T Consensus 7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~~-~ 85 (126)
T 1msp_A 7 GDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDL-N 85 (126)
T ss_dssp CCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSCC-S
T ss_pred CeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCcc-C
Confidence 57999996 999999999999999999999999999999999999999999999999999999999999998776554 5
Q ss_pred CceEEEEEEEcCCCCCchhhHHhhhcccCCCcceEEEeEEEEe
Q 041775 83 KDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILI 125 (432)
Q Consensus 83 kDKFLVQS~~Vp~gttd~Di~~e~WKk~sk~~I~E~KLrVvfv 125 (432)
+|||+|||+.++++.+ +|+...||.. + ..+..++|+|.|.
T Consensus 86 kDKf~Vq~~~~p~~~~-~~~~~~wf~~-d-~~~~~k~L~V~Yn 125 (126)
T 1msp_A 86 NDRITIEWTNTPDGAA-KQFRREWFQG-D-GMVRRKNLPIEYN 125 (126)
T ss_dssp SCEEEEEEEECCTTCC-SSCCTHHHHS-S-SCCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcc-hhhhHHhhcC-C-CceEEEEEEEEec
Confidence 9999999999998753 4666556644 3 4689999999986
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.93 E-value=4.5e-25 Score=188.27 Aligned_cols=104 Identities=20% Similarity=0.303 Sum_probs=89.8
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCCCCCCCCce
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDK 85 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~q~kDK 85 (432)
|.|+|.+|.|.++. .+|+|+|+|+++++||||||||+|++|||||+.|+|.||++++|.|++|++ + .++||
T Consensus 3 L~i~P~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 89999999999873 479999999999999999999999999999999999999999999999996 2 37999
Q ss_pred EEEEEEEcCCCCCchhhHHhhhcccCCCcceEEEeEEE
Q 041775 86 FLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVI 123 (432)
Q Consensus 86 FLVQS~~Vp~gttd~Di~~e~WKk~sk~~I~E~KLrVv 123 (432)
|+||++.++++..+ ..++|++... ..+.+|++.
T Consensus 74 flvq~~~~~~~~~d---~~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADATD---AQAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTCSC---HHHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCCCC---HHHHhhcCCC--CceEEEEEE
Confidence 99999999875433 3689998643 455666654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.92 E-value=2.3e-24 Score=186.51 Aligned_cols=106 Identities=24% Similarity=0.384 Sum_probs=92.2
Q ss_pred CceEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCCCCCCCC
Q 041775 4 QLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCK 83 (432)
Q Consensus 4 ~LLsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~q~k 83 (432)
.++.++|.+|.|.+.. .+|.|+|+|+++.+||||||||+|++|||||+.|+|+||++++|.|++|++ + .++
T Consensus 9 ~~~~~~p~~l~F~~~g---g~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPATG---GNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTTC---EEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecCC---CEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 5789999999998763 489999999999999999999999999999999999999999999999997 3 369
Q ss_pred ceEEEEEEEcCCCCCchhhHHhhhcccCCCcceEEEeEEE
Q 041775 84 DKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVI 123 (432)
Q Consensus 84 DKFLVQS~~Vp~gttd~Di~~e~WKk~sk~~I~E~KLrVv 123 (432)
|||+||++.++++..+ ..++|++..+ ..+.+|++.
T Consensus 80 DKflVq~~~~~~d~~d---~~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEETD---PMAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTCCC---TTHHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCCCC---HHHHHhcCCC--CceEEEEEE
Confidence 9999999999865433 3689998654 577777764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.02 E-value=2.2e-05 Score=66.24 Aligned_cols=75 Identities=17% Similarity=0.346 Sum_probs=60.4
Q ss_pred cCeeEEeec-CCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCCCCCCCCceEEE
Q 041775 10 PKELKFIFE-LKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKFLI 88 (432)
Q Consensus 10 PsEL~F~~p-~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~q~kDKFLV 88 (432)
|+.|.|..- .+...+..+.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|+..|.... .....+.|
T Consensus 29 p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~g----~~~~~l~v 102 (122)
T 2ys4_A 29 PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSVG----DHSGRLIV 102 (122)
T ss_dssp CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSSB----CCCCBCEE
T ss_pred CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCCc----cEEEEEEE
Confidence 667888653 45677899999999999999999985 469999999999999999999999998532 23455555
Q ss_pred EE
Q 041775 89 QS 90 (432)
Q Consensus 89 QS 90 (432)
..
T Consensus 103 ~~ 104 (122)
T 2ys4_A 103 CY 104 (122)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.72 E-value=0.00021 Score=62.51 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=59.5
Q ss_pred CceEEecCeeEEee-cCCCeeeEEEEEEcCCCCeEEEEEeeC------CCCceeecCCceeecCCCeEEEEEEecc
Q 041775 4 QLLEIQPKELKFIF-ELKKQSSCSVRLTNNTHHYVAFKVKTT------SPKKYCVRPNVGIILPKSTCDFNVTMQA 72 (432)
Q Consensus 4 ~LLsIdPsEL~F~~-p~~kq~s~tLtLtN~Sd~~VAFKVKTT------SPkrY~VRPn~GII~PgeSv~I~VTLqp 72 (432)
+-+.+++..|.|-. .++...+++|+|+|++.-+..|++... .+.-+.|.|..|.|.||+++.|.|++.-
T Consensus 25 P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 25 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp CCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 66889999999985 456778999999999999999999853 3456889999999999999999999873
No 9
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.71 E-value=0.00013 Score=59.60 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=59.9
Q ss_pred CceEEecCeeEEeec-CCCeeeEEEEEEcCCCCeEEEEEeeCCC---CceeecCCceeecCCCeEEEEEEeccCc
Q 041775 4 QLLEIQPKELKFIFE-LKKQSSCSVRLTNNTHHYVAFKVKTTSP---KKYCVRPNVGIILPKSTCDFNVTMQAQA 74 (432)
Q Consensus 4 ~LLsIdPsEL~F~~p-~~kq~s~tLtLtN~Sd~~VAFKVKTTSP---krY~VRPn~GII~PgeSv~I~VTLqp~~ 74 (432)
+.+.+++..|.|-.- .+...++.++|+|+++.++.|++..... ..|.+.|..|.|.||++..|.|++.+..
T Consensus 8 P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~~ 82 (112)
T 2e6j_A 8 PKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSII 82 (112)
T ss_dssp CSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCCC
T ss_pred CEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECCC
Confidence 567888888988763 4667788999999999999999964221 5699999999999999999999999863
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.12 E-value=0.002 Score=64.18 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=59.4
Q ss_pred CCceEEecCeeEEee-cCCCeeeEEEEEEcCCCCeEEEEEeeCC------CCceeecCCceeecCCCeEEEEEEeccC
Q 041775 3 KQLLEIQPKELKFIF-ELKKQSSCSVRLTNNTHHYVAFKVKTTS------PKKYCVRPNVGIILPKSTCDFNVTMQAQ 73 (432)
Q Consensus 3 s~LLsIdPsEL~F~~-p~~kq~s~tLtLtN~Sd~~VAFKVKTTS------PkrY~VRPn~GII~PgeSv~I~VTLqp~ 73 (432)
-+-+.|++.++.|.. .+....+++|+|+|++.-++.|++.... +.-+.|.|..|.|.||+++.|.|++.-.
T Consensus 27 ~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 27 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp -CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred CCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 367889999999965 5678889999999999999999998642 2226699999999999999999998644
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.31 E-value=0.059 Score=49.54 Aligned_cols=69 Identities=10% Similarity=0.189 Sum_probs=58.9
Q ss_pred ceEEecCeeEEeecC-CCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCc
Q 041775 5 LLEIQPKELKFIFEL-KKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQA 74 (432)
Q Consensus 5 LLsIdPsEL~F~~p~-~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~ 74 (432)
-|.+++..+.|..-. +......++++|.++.++-++.... |..+.+++..+.|.||++..|.|++.+..
T Consensus 2 ~i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp CEEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred ceEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 378999999997633 4556779999999999999997644 88889999999999999999999998764
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.46 E-value=0.15 Score=46.79 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=57.6
Q ss_pred CceEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEE-EEeeCCCCceeecCCceeecCCCeEEEEEEeccCc
Q 041775 4 QLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAF-KVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQA 74 (432)
Q Consensus 4 ~LLsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAF-KVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~ 74 (432)
.-+.++ ..+.|-.-.+...++.++|+|.++.++.+ +|+|+ -+...+.++.+.|.||++..|.|++.+..
T Consensus 118 ~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~s-cgct~~~~~~~~i~PGe~~~i~v~~~~~~ 187 (220)
T 2qsv_A 118 GVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTR-NPALTAVPDRTEIKPGGSTLLRIAVDPQV 187 (220)
T ss_dssp CCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEEC-STTEEEEESCSEECTTCEEEEEEEECHHH
T ss_pred CEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeC-CCCEeeecCCccCCCCCEEEEEEEEecCC
Confidence 346777 78888643366678899999999999988 78776 47899999999999999999999998764
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=89.22 E-value=1.8 Score=41.37 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=60.7
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCC----------CCceeecCCceeecCCCeEEEEEEeccCcc
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTS----------PKKYCVRPNVGIILPKSTCDFNVTMQAQAV 75 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTS----------PkrY~VRPn~GII~PgeSv~I~VTLqp~~~ 75 (432)
|.|+|..++|... +...+|+|+|.++.++.--+.... ..-|.|.|+.-.|+||+...|.|...+. .
T Consensus 30 v~i~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~-~ 105 (257)
T 3q48_A 30 LIAQGTRVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-P 105 (257)
T ss_dssp -CCSCSEEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-C
T ss_pred EEEcceEEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-C
Confidence 5677778888753 235899999999888776665432 1239999999999999999999987765 3
Q ss_pred CCCCCCCCceEEEEEEEcCC
Q 041775 76 APPDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 76 ~P~D~q~kDKFLVQS~~Vp~ 95 (432)
.|.|.. .-|.+....+|+
T Consensus 106 LP~DrE--Slf~lnv~eIPp 123 (257)
T 3q48_A 106 LPTDRE--SLFWLNILEVPP 123 (257)
T ss_dssp CCSSSC--EEEEEEEEEECC
T ss_pred CCCCce--eEEEEEeeecCC
Confidence 465533 346666666665
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=88.89 E-value=2.7 Score=39.19 Aligned_cols=84 Identities=10% Similarity=0.178 Sum_probs=61.7
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCC-----CCceeecCCceeecCCCeEEEEEEeccCccCCCCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTS-----PKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDM 80 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTS-----PkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~ 80 (432)
|.+++..++|.... ...+|+|+|.++.++.--+.... ..-|.|-|+.-.|+||+...|.|.+.+. ..|.|.
T Consensus 14 v~i~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~Dr 89 (221)
T 2co7_B 14 VKLGATRVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 89 (221)
T ss_dssp CEESCSEEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCSSS
T ss_pred EEEcceEEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCCCc
Confidence 56788888887543 36799999999887766654421 2359999999999999999999998763 456653
Q ss_pred CCCceEEEEEEEcCC
Q 041775 81 VCKDKFLIQSTVVPV 95 (432)
Q Consensus 81 q~kDKFLVQS~~Vp~ 95 (432)
..-|.+....+|+
T Consensus 90 --Eslf~lnv~eIPp 102 (221)
T 2co7_B 90 --ETLQWVCIKAVPP 102 (221)
T ss_dssp --CEEEEEEEEEECC
T ss_pred --eEEEEEEeecCCC
Confidence 2356666666664
No 15
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=88.73 E-value=3.7 Score=38.14 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=62.0
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCC-eEEEEEeeCC-------CCceeecCCceeecCCCeEEEEEEeccC-ccC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHH-YVAFKVKTTS-------PKKYCVRPNVGIILPKSTCDFNVTMQAQ-AVA 76 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~-~VAFKVKTTS-------PkrY~VRPn~GII~PgeSv~I~VTLqp~-~~~ 76 (432)
|.+++..++|.... ...+|+|+|.++. ++.--+.... ..-|.|-|+.-.|+||+...|.|.+.+. ...
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 56778888887643 4679999999887 7766655432 2349999999999999999999998763 235
Q ss_pred CCCCCCCceEEEEEEEcCC
Q 041775 77 PPDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 77 P~D~q~kDKFLVQS~~Vp~ 95 (432)
|.|. ..-|-+....+|+
T Consensus 79 P~Dr--ESlf~lnv~eIPp 95 (218)
T 2xg5_A 79 PQDR--ESLFYFNLREIPP 95 (218)
T ss_dssp CSSS--CEEEEEEEEEECC
T ss_pred CCCc--eEEEEEEeecCCC
Confidence 6664 3446666666664
No 16
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=86.92 E-value=0.83 Score=36.84 Aligned_cols=56 Identities=18% Similarity=0.097 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhccccc
Q 041775 351 VKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVK 406 (432)
Q Consensus 351 ~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~k 406 (432)
+-.-++|..+|..||.||.-.+.+|..|++.=-.--++-+.|++.|..|+.|-...
T Consensus 6 ~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 6 SPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345688899999999999999999999999888999999999999999876543
No 17
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=86.20 E-value=4.7 Score=37.11 Aligned_cols=84 Identities=12% Similarity=0.195 Sum_probs=61.2
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCC-eEEEEEeeCC-----CCceeecCCceeecCCCeEEEEEEe-ccCccCCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHH-YVAFKVKTTS-----PKKYCVRPNVGIILPKSTCDFNVTM-QAQAVAPP 78 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~-~VAFKVKTTS-----PkrY~VRPn~GII~PgeSv~I~VTL-qp~~~~P~ 78 (432)
+.+++..+.|.... ...+|+|+|.++. ++.--+.... ..-|.|-|+.-.|+||+...|.|.. .+ ...|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATN-NQLPQ 77 (205)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSC-SCSCS
T ss_pred eEecceEEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 56778888887643 4679999999887 7666654421 2359999999999999999999988 65 34566
Q ss_pred CCCCCceEEEEEEEcCC
Q 041775 79 DMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 79 D~q~kDKFLVQS~~Vp~ 95 (432)
|. ..-|-+....+|+
T Consensus 78 Dr--Eslf~lnv~eIPp 92 (205)
T 1klf_A 78 DR--ESLFWMNVKAIPS 92 (205)
T ss_dssp SS--CEEEEEEEEEECC
T ss_pred Cc--eEEEEEEeEecCC
Confidence 53 2356666666664
No 18
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=85.05 E-value=4.8 Score=38.14 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=60.2
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeC-----CCCceeecCCceeecCCCeEEEEEEeccCccCCCCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTT-----SPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDM 80 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTT-----SPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~ 80 (432)
|.|++..++|.... ...+|+|+|.++.++.--+... ...-|.|.|+.-.|.||+...|.|.+... ..|.|.
T Consensus 24 v~l~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~DR 99 (239)
T 4djm_A 24 LHLGATRVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPDR 99 (239)
T ss_dssp CEESCSEEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSSS
T ss_pred EEEcceEEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCCc
Confidence 56888888887542 3679999999888766554421 12349999999999999999999987754 356553
Q ss_pred CCCceEEEEEEEcCC
Q 041775 81 VCKDKFLIQSTVVPV 95 (432)
Q Consensus 81 q~kDKFLVQS~~Vp~ 95 (432)
. .-|-+....+|+
T Consensus 100 E--Slf~lnv~eIPp 112 (239)
T 4djm_A 100 E--SLQWICVKGIPP 112 (239)
T ss_dssp C--EEEEEEEEEECC
T ss_pred e--EEEEEEEEecCC
Confidence 2 346666666664
No 19
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=83.72 E-value=9.2 Score=35.12 Aligned_cols=84 Identities=11% Similarity=0.195 Sum_probs=59.5
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCC-CeEEEEEeeCC-----CCceeecCCceeecCCCeEEEEEE-eccCccCCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTH-HYVAFKVKTTS-----PKKYCVRPNVGIILPKSTCDFNVT-MQAQAVAPP 78 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd-~~VAFKVKTTS-----PkrY~VRPn~GII~PgeSv~I~VT-Lqp~~~~P~ 78 (432)
+.+++..+.|.... ...+|+|+|.++ .++.--+.... ..-|.|-|+.-.|+||+...|.|. ... ...|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 56778888887643 467999999986 77666654421 234999999999999999999998 754 34566
Q ss_pred CCCCCceEEEEEEEcCC
Q 041775 79 DMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 79 D~q~kDKFLVQS~~Vp~ 95 (432)
|.. .-|-+....+|+
T Consensus 78 DrE--slf~lnv~eIPp 92 (206)
T 1l4i_A 78 DRE--SLFWVNVKAIPA 92 (206)
T ss_dssp SSC--EEEEEEEEEEEC
T ss_pred Cce--EEEEEEeecCCC
Confidence 643 345555555554
No 20
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=79.59 E-value=17 Score=33.86 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=60.1
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeC-------CCCceeecCCceeecCCCeEEEEEEeccCccCCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTT-------SPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPP 78 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTT-------SPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~ 78 (432)
+.|+-+.++|+.. ....+|+|+|.++.++.--.+-. ...-|.|.|+.-.|+||+...|.|...+. ..|.
T Consensus 14 v~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP~ 89 (218)
T 4ay0_A 14 VTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFPR 89 (218)
T ss_dssp EEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred EEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCCc
Confidence 5566677888653 23678999999988876665431 11239999999999999999999988764 3565
Q ss_pred CCCCCceEEEEEEEcCC
Q 041775 79 DMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 79 D~q~kDKFLVQS~~Vp~ 95 (432)
|. ..-|.+....+|+
T Consensus 90 DR--ESlf~lnv~eIPp 104 (218)
T 4ay0_A 90 DK--ESLKWLCVKGIPP 104 (218)
T ss_dssp SS--CEEEEEEEEEECC
T ss_pred Cc--EEEEEEEEEecCC
Confidence 53 2347777777775
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.17 E-value=6.1 Score=34.76 Aligned_cols=42 Identities=24% Similarity=0.203 Sum_probs=18.5
Q ss_pred HHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHH
Q 041775 356 EMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELD 397 (432)
Q Consensus 356 ~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~ 397 (432)
.||..|..++-|++++..-+.+|+++-..--.+..+|+.||.
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443
No 22
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=78.03 E-value=14 Score=34.86 Aligned_cols=84 Identities=14% Similarity=0.240 Sum_probs=56.9
Q ss_pred eEEecCeeEEeecCCCeeeEEEEEEcCCCC-eEEEEEeeC--C----CCceeecCCceeecCCCeEEEEEEeccCccCCC
Q 041775 6 LEIQPKELKFIFELKKQSSCSVRLTNNTHH-YVAFKVKTT--S----PKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPP 78 (432)
Q Consensus 6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~-~VAFKVKTT--S----PkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~ 78 (432)
+.++...++|... ....+|+|+|.++. ++.--+... . ..-|.|.|+.-.|.||+...|.|...+. ..|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 4566677888753 23579999999875 543333321 1 2249999999999999999999987754 3565
Q ss_pred CCCCCceEEEEEEEcCC
Q 041775 79 DMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 79 D~q~kDKFLVQS~~Vp~ 95 (432)
|.. .-|-+....+|+
T Consensus 78 DRE--Slf~lnv~eIPp 92 (224)
T 3gfu_C 78 DKE--SVYWLNLQDIPP 92 (224)
T ss_dssp SSC--EEEEEEEEEECC
T ss_pred Cce--EEEEEEeecCCC
Confidence 533 446566666664
No 23
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=73.95 E-value=17 Score=37.16 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=51.3
Q ss_pred CCceEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCcee----------------------ecCCceeecC
Q 041775 3 KQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYC----------------------VRPNVGIILP 60 (432)
Q Consensus 3 s~LLsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~----------------------VRPn~GII~P 60 (432)
...+.++-..-+|.- .++..+-+++++|.++.+|-..==+|+.=+|. |.|+ .=|.|
T Consensus 247 ~~~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~pI~P 324 (382)
T 1yew_A 247 APTVSVKVEDATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SPLAP 324 (382)
T ss_dssp CCSEEEEEEEEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SCBCT
T ss_pred CCceEEEeeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CCcCC
Confidence 445566666677775 47888999999999999998885566655552 2222 23899
Q ss_pred CCeEEEEEEeccCc
Q 041775 61 KSTCDFNVTMQAQA 74 (432)
Q Consensus 61 geSv~I~VTLqp~~ 74 (432)
|++.+|.|+.|...
T Consensus 325 GETr~~~v~a~da~ 338 (382)
T 1yew_A 325 GETRTVDVTASDAA 338 (382)
T ss_dssp TCEEEEEEEEECHH
T ss_pred CceeEEEEEeehHH
Confidence 99999999988643
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=71.53 E-value=7.5 Score=34.17 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=32.3
Q ss_pred HHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhh-------chHHHHHHHHHHHHHhh
Q 041775 347 ELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRL-------GIQEKKILKGELDTLRS 401 (432)
Q Consensus 347 ~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~-------~~qe~~~Lq~El~~lr~ 401 (432)
.+++++|.-.++.+...|+..+++-+.-|..|++|.-. ..++...|++|...|++
T Consensus 63 ALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 63 YLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666555555555544 44455555555555554
No 25
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=71.19 E-value=18 Score=29.98 Aligned_cols=51 Identities=8% Similarity=0.197 Sum_probs=39.3
Q ss_pred eeEEEEEEcCCCCeEEEEEeeCCCCceee-cCCceeecCCCeEEEEEEeccC
Q 041775 23 SSCSVRLTNNTHHYVAFKVKTTSPKKYCV-RPNVGIILPKSTCDFNVTMQAQ 73 (432)
Q Consensus 23 ~s~tLtLtN~Sd~~VAFKVKTTSPkrY~V-RPn~GII~PgeSv~I~VTLqp~ 73 (432)
-..+|+|.|.+.++..|.+.-...+.+.+ .|..=.+.||+...+.|.+...
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEEC
Confidence 37799999999999999998876444554 4555688899988888877554
No 26
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=62.82 E-value=31 Score=35.61 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=49.3
Q ss_pred ceEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCcee------e---------------cCCceeecCCCe
Q 041775 5 LLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYC------V---------------RPNVGIILPKST 63 (432)
Q Consensus 5 LLsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~------V---------------RPn~GII~PgeS 63 (432)
.+.++-..-+|.- .++..+-+++++|.++.+|-+.==+|+.-+|. . .|+ =|.||++
T Consensus 283 ~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGET 359 (419)
T 3rfr_A 283 QVTTELNGGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGES 359 (419)
T ss_dssp CCEEEEEEEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCE
T ss_pred ceEEEEeceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcc
Confidence 3555555667775 46788999999999999998885555555443 1 233 5999999
Q ss_pred EEEEEEeccCc
Q 041775 64 CDFNVTMQAQA 74 (432)
Q Consensus 64 v~I~VTLqp~~ 74 (432)
.+|+|+.|...
T Consensus 360 rt~~V~a~da~ 370 (419)
T 3rfr_A 360 KEIVVKIQDAR 370 (419)
T ss_dssp EEEEEEEECHH
T ss_pred eEEEEEeehHH
Confidence 99999988643
No 27
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=61.28 E-value=9.2 Score=38.05 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k 402 (432)
+++.+++|..++..||..+..++..|..|++.-...-+.-+.|++.+..|+.+
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888888776655555566677777766653
No 28
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=60.77 E-value=22 Score=30.74 Aligned_cols=44 Identities=25% Similarity=0.416 Sum_probs=31.1
Q ss_pred HHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcc
Q 041775 353 DIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 353 d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
=|..|+.++|.||+.|.+...+.. .+.-|.+.|+.|++.|++..
T Consensus 41 ~v~ql~~~i~~Le~eL~e~r~~~q-------~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQQHLRQ-------QAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 355677777777777777766543 44456778999999998644
No 29
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=58.26 E-value=10 Score=30.11 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=24.1
Q ss_pred HhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 359 SKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 359 ~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
..+..||.++.+.+.....|..|...--++...|+.|+..||
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345555666666555556666655555556666666665543
No 30
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.24 E-value=14 Score=31.10 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=31.4
Q ss_pred HHHHHHhhhhHhhhhhhhhhhhhhhh-------hhhhhchHHHHHHHHHHHHHh
Q 041775 354 IEEMKSKLNELQSKLSEAEVTISKLT-------EENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 354 ~~~l~~kl~~le~kl~ea~~~I~kL~-------Ee~~~~~qe~~~Lq~El~~lr 400 (432)
.+-++-+|..|++.+...+.-+.+|+ .-|..+-+++.++.+||+.|-
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666655555555554 446677789999999999885
No 31
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=55.27 E-value=22 Score=28.49 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhh
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRL 384 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~ 384 (432)
+++||++|......|-.||.++..-+.++++|...
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~ 36 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEIS 36 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999998999999999998888888877665
No 32
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=55.22 E-value=15 Score=37.18 Aligned_cols=55 Identities=25% Similarity=0.359 Sum_probs=44.2
Q ss_pred HHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 347 ELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 347 ~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
+..+...+++|+.+...|+.++++++..+..|++.=+..-++|.+|..++..||-
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456667778888888888888888888888888888888899999999999873
No 33
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=54.78 E-value=23 Score=29.10 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=28.4
Q ss_pred HHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcc
Q 041775 355 EEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 355 ~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
.-.++-+-++++||.||+.....|- .|-.+|+++|..||.-+
T Consensus 34 s~vr~~ni~~eskL~eae~rn~eL~-------~e~~~l~~~~eelq~~~ 75 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEARNRDLE-------AHVRQLQERMELLQAEG 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHccc
Confidence 3445555667778888887777774 34678888888888543
No 34
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=52.74 E-value=50 Score=28.16 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHH
Q 041775 353 DIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTL 399 (432)
Q Consensus 353 d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~l 399 (432)
-=.+|-.+|..|++.|++-+.....|..+++..-++-..|++.++.+
T Consensus 77 ~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 77 NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666666666666666666666554
No 35
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=52.37 E-value=13 Score=30.37 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=22.4
Q ss_pred HhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 359 SKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 359 ~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
.+|.+++.++++...-|.+|+..++.--++...+++.+.+|.
T Consensus 3 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 3 KLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444455555555555555555555556666666554
No 36
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=51.30 E-value=12 Score=36.22 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=30.6
Q ss_pred hhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 361 LNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 361 l~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
+.+|+..++.......||.++.+..-+|-..||+|++.|+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444455555678888999999999999999999973
No 37
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=49.67 E-value=15 Score=33.71 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=54.3
Q ss_pred chhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcc
Q 041775 342 GKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 342 ~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
|..++...+..-.+-|+++|..|...-..-+..+....++.|..-++.+.|+=||..|++.+
T Consensus 86 ~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~r 147 (170)
T 3l4q_C 86 GNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIR 147 (170)
T ss_dssp CCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44456667889999999999999998888888999999999999999999999999999754
No 38
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=49.43 E-value=24 Score=30.15 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHH
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDT 398 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~ 398 (432)
+.+..+..++..|..+|...+.....|.+.++...+|++.|+..|..
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~ 59 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQA 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777788888888888888888888888888887776654
No 39
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.26 E-value=22 Score=45.02 Aligned_cols=53 Identities=25% Similarity=0.319 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhcc
Q 041775 351 VKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 351 ~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~ 403 (432)
.+..+..+.+|+..+.+|.+-+..|.+|+++-...++|++.|+.|++...+|-
T Consensus 2020 e~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl 2072 (3245)
T 3vkg_A 2020 ENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKV 2072 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777888888888888899999999999999999999999877653
No 40
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=47.13 E-value=18 Score=29.86 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=27.8
Q ss_pred HHHHHhhhhHhhhhhhhhhhhhhhhhhhhh-chHHHHHH
Q 041775 355 EEMKSKLNELQSKLSEAEVTISKLTEENRL-GIQEKKIL 392 (432)
Q Consensus 355 ~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~-~~qe~~~L 392 (432)
++=|..+...+..|+||+.+|..+.-|-|. ..+.|..+
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~ 72 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMY 72 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHH
Confidence 455778888999999999999998877554 33444433
No 41
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=46.26 E-value=17 Score=29.13 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=31.1
Q ss_pred hhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 041775 367 KLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 367 kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k 402 (432)
=|..|-.-|..|.++.+...+|++.|+.|...|+.+
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356688889999999999999999999999999864
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.13 E-value=23 Score=29.01 Aligned_cols=12 Identities=25% Similarity=0.338 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 041775 387 QEKKILKGELDT 398 (432)
Q Consensus 387 qe~~~Lq~El~~ 398 (432)
+|++.|++|...
T Consensus 55 ~en~qLk~E~~~ 66 (81)
T 2jee_A 55 RENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 43
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=44.23 E-value=42 Score=26.81 Aligned_cols=48 Identities=29% Similarity=0.326 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHH--HHHHHHHH
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQE--KKILKGEL 396 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe--~~~Lq~El 396 (432)
.|++||++|......|-.||..+..-+.++++|...++.+ ..+|++|-
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L~~E~ 52 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTER 52 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999998888888776663322 34566654
No 44
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=43.20 E-value=36 Score=28.10 Aligned_cols=46 Identities=26% Similarity=0.362 Sum_probs=35.1
Q ss_pred HHHHHhhhhHhhhhhhhhhhhhhhhhhhh-hchHHHHHHHHHHHHHh
Q 041775 355 EEMKSKLNELQSKLSEAEVTISKLTEENR-LGIQEKKILKGELDTLR 400 (432)
Q Consensus 355 ~~l~~kl~~le~kl~ea~~~I~kL~Ee~~-~~~qe~~~Lq~El~~lr 400 (432)
++=|..+...|..|+||+.+|..+.-|-| ...+.|..++.-+..-|
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk 91 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYR 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 56678899999999999999999988844 46677777765444433
No 45
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=42.11 E-value=54 Score=25.87 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHH
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDT 398 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~ 398 (432)
+-.|.++...++..++.+|++++....++-+|-+.-.+-...|+.+|+.
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3446666677777777777777766666666655555555555555544
No 46
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=41.84 E-value=43 Score=33.71 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=54.3
Q ss_pred hhchhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 340 KAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 340 ~~~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
.-|+.++...+..-.+.||++|+.+...-..-+..+..-.++.|..-++-+.|+=||.-||+
T Consensus 193 ~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 193 REGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp TTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 33556777889999999999999999888888888888889999999999999999999997
No 47
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=41.26 E-value=68 Score=25.88 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=38.3
Q ss_pred HHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchH-------HHHHHHHHHHHHhh
Q 041775 346 EELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQ-------EKKILKGELDTLRS 401 (432)
Q Consensus 346 ~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~q-------e~~~Lq~El~~lr~ 401 (432)
+.-++-.+++.+|.|..+=-.+-..||.-|.-|+-.=..+.- +-+.|++|+.+||+
T Consensus 22 e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 22 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555667777777766666666688888888776544433 34678889999884
No 48
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=41.11 E-value=22 Score=25.97 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=18.4
Q ss_pred hhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHH
Q 041775 361 LNELQSKLSEAEVTISKLTEENRLGIQEKKILKGE 395 (432)
Q Consensus 361 l~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~E 395 (432)
|+.||++-.+-+..+..|.|--++-..|+.+|.|=
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455555555555555544444445566666653
No 49
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=40.78 E-value=1.4e+02 Score=25.15 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhch-------HHHHHHHHHHHHHhh
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGI-------QEKKILKGELDTLRS 401 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~-------qe~~~Lq~El~~lr~ 401 (432)
++-.+++.+|.|..+--.+-..+|..|..|+-.=..++ .+-+.|++||.+||+
T Consensus 45 n~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 45 NLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666655556668888887765433222 245678899999885
No 50
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=39.73 E-value=41 Score=26.58 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHhh
Q 041775 386 IQEKKILKGELDTLRS 401 (432)
Q Consensus 386 ~qe~~~Lq~El~~lr~ 401 (432)
-+.+.++-+|+..|.|
T Consensus 33 e~~~~~~E~ev~~L~k 48 (81)
T 1ic2_A 33 EERSKQLEDELVALQK 48 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 3334444444444444
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.63 E-value=24 Score=35.87 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=9.3
Q ss_pred hHhhhhhhhhhhhhhhhhhhhh
Q 041775 363 ELQSKLSEAEVTISKLTEENRL 384 (432)
Q Consensus 363 ~le~kl~ea~~~I~kL~Ee~~~ 384 (432)
.||.++++.+..+..|++|.-.
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHH
Confidence 4444444444444444444333
No 52
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.23 E-value=20 Score=33.58 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=17.3
Q ss_pred HhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 364 LQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 364 le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
++..|+.|+.+|++|.-|.+.-.|+-+..++|+.-|++
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888887777666555555554444444444
No 53
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.81 E-value=79 Score=35.94 Aligned_cols=33 Identities=9% Similarity=0.267 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhh
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTISKLTEENRL 384 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~ 384 (432)
++.++++.++.+|+.++++.+..+.++..|...
T Consensus 977 ~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~ 1009 (1080)
T 2dfs_A 977 EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555544433
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.34 E-value=1.1e+02 Score=30.98 Aligned_cols=12 Identities=8% Similarity=-0.022 Sum_probs=4.3
Q ss_pred HHHhhhhHhhhh
Q 041775 357 MKSKLNELQSKL 368 (432)
Q Consensus 357 l~~kl~~le~kl 368 (432)
++.+...++.++
T Consensus 514 ~~~~~~~~~~~~ 525 (597)
T 3oja_B 514 LKERQAFKLRET 525 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhhhhhhHHHH
Confidence 333333333333
No 55
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=34.47 E-value=1.6e+02 Score=25.24 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=19.0
Q ss_pred CCeeeEEEEEEcCCCCeEEEEEee
Q 041775 20 KKQSSCSVRLTNNTHHYVAFKVKT 43 (432)
Q Consensus 20 ~kq~s~tLtLtN~Sd~~VAFKVKT 43 (432)
+....-.|+++|+++..+-+-..+
T Consensus 17 g~~v~~~ltv~N~s~~~v~l~f~S 40 (120)
T 3isy_A 17 PEQIKFNMSLKNQSERAIEFQFST 40 (120)
T ss_dssp SSCEEEEEEEEECSSSCEEEEESS
T ss_pred CCeEEEEEEEEcCCCCcEEEEeCC
Confidence 456778899999999888887754
No 56
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.91 E-value=99 Score=22.56 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhh
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEE 381 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee 381 (432)
+..++.+++.+.+...+.++++..-+.+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 41 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEK 41 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 57
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=32.51 E-value=50 Score=28.50 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=29.1
Q ss_pred hhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhccccc--ccccCCcchh
Q 041775 369 SEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVK--NVHVGFPLLF 416 (432)
Q Consensus 369 ~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k~~~k--~~~~GFpllf 416 (432)
++....|.+|.+|.+..-+|.+.|++++....-+.-.. ....|+++++
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~~~~i~g~~~~~ 77 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVVA 77 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEESSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEeCCEEEEE
Confidence 35566777888887777777777777776654222111 1223777654
No 58
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=31.94 E-value=22 Score=25.70 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhhHhh
Q 041775 352 KDIEEMKSKLNELQS 366 (432)
Q Consensus 352 ~d~~~l~~kl~~le~ 366 (432)
+|+++|++||+.|.|
T Consensus 26 edi~~MqsRLaALRS 40 (40)
T 2xze_Q 26 EALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 689999999998864
No 59
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.73 E-value=76 Score=25.44 Aligned_cols=48 Identities=25% Similarity=0.325 Sum_probs=23.3
Q ss_pred HHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 354 IEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 354 ~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
+++|+--|..-...|.+=+..|-.|..+=..-..+-..||.||+.+|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444444444444443333333344467888887763
No 60
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=31.27 E-value=32 Score=25.91 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=23.5
Q ss_pred HHHHhhhhHhhhhhhhhhhhhhhhhhh
Q 041775 356 EMKSKLNELQSKLSEAEVTISKLTEEN 382 (432)
Q Consensus 356 ~l~~kl~~le~kl~ea~~~I~kL~Ee~ 382 (432)
+-..|+..||..|+.+...|.||.+|+
T Consensus 11 ~~Rkk~eeler~lrk~kk~iKklEdeN 37 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKKKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 446788899999999999999999885
No 61
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=31.04 E-value=97 Score=39.51 Aligned_cols=51 Identities=16% Similarity=0.313 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
.+.+.|.|+.+++..+.||+-|+.+|..|..|+.+=.+.-+.|++++..|-
T Consensus 2054 ~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2054 LIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhcc
Confidence 345566677777778888899999999999999998888899998887765
No 62
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=29.83 E-value=94 Score=23.35 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=32.4
Q ss_pred hHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhch
Q 041775 345 AEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGI 386 (432)
Q Consensus 345 ~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~ 386 (432)
...-+|..||+.|..|.+.|.+....+..-|..-++|--++.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN 45 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARAN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578999999999999999988888877776666654443
No 63
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=29.55 E-value=74 Score=32.56 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
.+++++.+|..++..||..+..++..|..|.+--...-+.-+.|++.+..|..
T Consensus 81 ~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 81 QLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999998887555444455667777777764
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.14 E-value=1e+02 Score=28.70 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhh
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEE 381 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee 381 (432)
+...+++++..+..++.++.+.+..+..++.+
T Consensus 116 ~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~ 147 (256)
T 3na7_A 116 LQNEIKRKSEKQEDLKKEMLELEKLALELESL 147 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444333333333333
No 65
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.96 E-value=1.6e+02 Score=26.66 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=11.0
Q ss_pred ccCCcchHHHHHHHHHH
Q 041775 321 EELQPKKDAELKLMKEL 337 (432)
Q Consensus 321 ~~~~~~~~~e~~~~~~~ 337 (432)
.+|.++.-+++.-|++.
T Consensus 66 LnLT~EQq~ql~~I~~e 82 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDD 82 (175)
T ss_dssp --CCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 35777777787777665
No 66
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=27.40 E-value=54 Score=27.17 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=28.6
Q ss_pred hHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 363 ELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 363 ~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
+||....+-..-|.+|.+|+....+|+|.+++.+..|.
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444456677888999999999999999888764
No 67
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.21 E-value=72 Score=28.27 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=27.1
Q ss_pred HHHHHhhhhHhhhhhhhhhhhhhhhh-------hhhhchHHHHHHHHHHHHHh
Q 041775 355 EEMKSKLNELQSKLSEAEVTISKLTE-------ENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 355 ~~l~~kl~~le~kl~ea~~~I~kL~E-------e~~~~~qe~~~Lq~El~~lr 400 (432)
+-++.+|+.|.+.|.-.+..+.+|.+ -|..+-+++.++.+||+.|-
T Consensus 28 e~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 28 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443 45667778889999998875
No 68
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=26.77 E-value=1.5e+02 Score=33.82 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=20.7
Q ss_pred Hhhhhhhhhhhhhhhhh-----hhhhchHHHHHHHHHHHHHhh
Q 041775 364 LQSKLSEAEVTISKLTE-----ENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 364 le~kl~ea~~~I~kL~E-----e~~~~~qe~~~Lq~El~~lr~ 401 (432)
|+..+++.+..|.+..+ .+....++++.|+.|++.-|.
T Consensus 1035 L~qq~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1080)
T 2dfs_A 1035 LKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443 334445777777777777664
No 69
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=25.73 E-value=1.1e+02 Score=25.19 Aligned_cols=8 Identities=0% Similarity=0.077 Sum_probs=2.9
Q ss_pred hHhhhhhh
Q 041775 363 ELQSKLSE 370 (432)
Q Consensus 363 ~le~kl~e 370 (432)
.++.++.+
T Consensus 27 ~~e~~~k~ 34 (101)
T 3u1c_A 27 QAEADKKA 34 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 70
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=25.69 E-value=88 Score=26.70 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCeEE---EEEeeCCCC---ceeecCCceeecCCCeEEE
Q 041775 25 CSVRLTNNTHHYVA---FKVKTTSPK---KYCVRPNVGIILPKSTCDF 66 (432)
Q Consensus 25 ~tLtLtN~Sd~~VA---FKVKTTSPk---rY~VRPn~GII~PgeSv~I 66 (432)
..++|.|.++..+. |+++-...+ .|+. |..-+|.||++++|
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 47899999877665 777755433 3655 55558999998665
No 71
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=25.46 E-value=1.5e+02 Score=24.22 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k 402 (432)
.+-.+|..|+.|+..|+..++.++......+..-..+...+..-..|++.|-||
T Consensus 41 ~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRr 94 (101)
T 3u59_A 41 QLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888888887776666555544444444555556677777653
No 72
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=25.35 E-value=15 Score=30.96 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=0.0
Q ss_pred hHHHhHHHHHHHHHHh-----------hhhHhhhhhhhhhhhhhhh
Q 041775 345 AEELELVKDIEEMKSK-----------LNELQSKLSEAEVTISKLT 379 (432)
Q Consensus 345 ~~~~~~~~d~~~l~~k-----------l~~le~kl~ea~~~I~kL~ 379 (432)
.+..+||.|+|.|+-. -+-|||||+-+.++|.+|+
T Consensus 50 rQv~qLt~~lQ~~~~Ene~Lke~qKtqkal~ESKL~~~kk~ie~l~ 95 (95)
T 3n7n_E 50 RQIAQLNKQLQLSFQENEKLLSVQKNQKALYQSKLSSKDAFIDDLK 95 (95)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5567889999888643 3557999999999998874
No 73
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=24.89 E-value=60 Score=36.87 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhhhhhh
Q 041775 352 KDIEEMKSKLNELQSKLSEAEVTISKLTEE 381 (432)
Q Consensus 352 ~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee 381 (432)
...+++..++..++.+|++.+..+..|.++
T Consensus 920 ~~~~~Le~~l~ele~elee~ee~l~el~~e 949 (1184)
T 1i84_S 920 AKKQELEEILHEMEARIEEEEERSQQLQAE 949 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333
No 74
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=24.73 E-value=1.2e+02 Score=24.80 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=8.9
Q ss_pred HHHHHhhhhHhhhhhhhhhhhhh
Q 041775 355 EEMKSKLNELQSKLSEAEVTISK 377 (432)
Q Consensus 355 ~~l~~kl~~le~kl~ea~~~I~k 377 (432)
+|...+...++.++.+|+..-.+
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~ 41 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQ 41 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444443333333
No 75
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=24.48 E-value=2.6e+02 Score=25.82 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHH
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILK 393 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq 393 (432)
.+..+++.+|.|+....+ |+...|++|..|-......++.|+
T Consensus 67 ~L~~E~e~~k~K~~~~~~---e~~~~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 67 RLKYEVEALKEKLEHQYA---QSYKQVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655543 333444444444333333333333
No 76
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.27 E-value=61 Score=21.81 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhh
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAE 372 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~ 372 (432)
+-|.+.-|.|||..||.||+.-+
T Consensus 6 lekkcaalesklqalekkleale 28 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999998887544
No 77
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=24.12 E-value=1.7e+02 Score=24.97 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=47.8
Q ss_pred CCeeeEEEEEEcCCC-CeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCCCCCCCCceEEEEEEEcCCC
Q 041775 20 KKQSSCSVRLTNNTH-HYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVG 96 (432)
Q Consensus 20 ~kq~s~tLtLtN~Sd-~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~q~kDKFLVQS~~Vp~g 96 (432)
++..+-.++++|... ..=+|+|+-...+.+.-.-..+ |.||++.+|.++..+.. ..-+.|...+-+.+
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~~--------~G~~~v~AvVD~~n 100 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPTQ--------EGMYRINATVDEEN 100 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCSS--------CEEEEEEEEESTTC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcCC--------CcEEEEEEEEcCCC
Confidence 567788999999975 4468888876666655443344 99999999999986542 23466666665543
No 78
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=24.01 E-value=1.2e+02 Score=24.61 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=32.9
Q ss_pred HHHHHhhhhHhhhhhhhhhhhhhhhhhhhhc---hHHHHHHHH
Q 041775 355 EEMKSKLNELQSKLSEAEVTISKLTEENRLG---IQEKKILKG 394 (432)
Q Consensus 355 ~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~---~qe~~~Lq~ 394 (432)
++=|..+...+..|+||+.+|..+.-|-|.. ...|..++.
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~ 72 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKA 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4678889999999999999999999888766 356777763
No 79
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=23.76 E-value=1.9e+02 Score=26.83 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=29.0
Q ss_pred HhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhc----hHHHHHHHHHHHHHhh
Q 041775 348 LELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLG----IQEKKILKGELDTLRS 401 (432)
Q Consensus 348 ~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~----~qe~~~Lq~El~~lr~ 401 (432)
..+-++++.+..++..|.+++.....-+..++..-... ...-..||.|+..||.
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~ 102 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRA 102 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544444443333333333 3337788888888874
No 80
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=23.64 E-value=17 Score=32.23 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=0.9
Q ss_pred HhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 041775 359 SKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 359 ~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k 402 (432)
..|+.-++||++|+.+-.+|.+.-|+..+....+..||+.+++.
T Consensus 9 ~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq 52 (130)
T 3cl3_D 9 GELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQ 52 (130)
T ss_dssp ------------------------------------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35667789999999999999999899999999999999888753
No 81
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=23.39 E-value=2.4e+02 Score=23.23 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=31.4
Q ss_pred chhhHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHH
Q 041775 342 GKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGEL 396 (432)
Q Consensus 342 ~~~~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El 396 (432)
.+..+..++-+++.+|..=.+.|-.-..+=+.+|.....-=-.+...-+.=.+||
T Consensus 18 eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL 72 (109)
T 3hd7_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDT 72 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777766677766666665433333333333334444
No 82
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=23.19 E-value=1.9e+02 Score=22.88 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
+..+.+++...++.||+.|.++...+.....|-..-..=|-.|-.|++.-|+
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788889999999999998888887766666555666677788887774
No 83
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=23.02 E-value=44 Score=23.31 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=21.3
Q ss_pred HHHHHHhhhhHhhhhhhhhhhhhhhhhh
Q 041775 354 IEEMKSKLNELQSKLSEAEVTISKLTEE 381 (432)
Q Consensus 354 ~~~l~~kl~~le~kl~ea~~~I~kL~Ee 381 (432)
++.+|.|...|+..+++|+-.+..|..+
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888887777666543
No 84
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=22.81 E-value=1.3e+02 Score=29.70 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=49.3
Q ss_pred EEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCCCCCCCCceEEEEEEEcCC
Q 041775 25 CSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPV 95 (432)
Q Consensus 25 ~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~q~kDKFLVQS~~Vp~ 95 (432)
-.+.|+|.|+- -|.++-+++..|.+.++.-.|+|+++..+.|.+..... ...=+|-|.-+.+.+
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 333 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIK-----GGDVNFEVTNFIVAP 333 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTCC-----CCEEEEEEEEEEEET
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecccccc-----ceEEEEEeeeeeecC
Confidence 58888998875 57777889999999999999999999999998764422 134567776666543
No 85
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.59 E-value=1.5e+02 Score=24.32 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k 402 (432)
.+-.+|..|..|+..||..|+.++......+..-..+-+.+...-.|+..|-||
T Consensus 41 ~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rr 94 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888887777766655544433333333344444467766553
No 86
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.17 E-value=1.6e+02 Score=27.41 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhh--hchHHHHHHHHHHHHHhhcc
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEENR--LGIQEKKILKGELDTLRSKS 403 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~--~~~qe~~~Lq~El~~lr~k~ 403 (432)
+...+..++..+..++..+.++...|.|.++.-. .+.+|-+.|++|++.+.++.
T Consensus 51 ~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i 106 (256)
T 3na7_A 51 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERS 106 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555554443211 25678888888888887644
No 87
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=21.93 E-value=1.5e+02 Score=27.02 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=28.5
Q ss_pred HhhhhHhhhhhhhhhhhhhhhhhhhhchHH-----HHHHHHHHHHHhhccccc
Q 041775 359 SKLNELQSKLSEAEVTISKLTEENRLGIQE-----KKILKGELDTLRSKSVVK 406 (432)
Q Consensus 359 ~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe-----~~~Lq~El~~lr~k~~~k 406 (432)
..+.++..-...+...|...+++-+..+.. |..|+++|+.+|.+-.+.
T Consensus 47 e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~~~lr~~l~kd~ee~r~~l~py 99 (216)
T 2lem_A 47 ENWDTLGSTVSQLQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPY 99 (216)
T ss_dssp HTTTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhccHHHHHHhhhHH
Confidence 334444444555666666666665543322 677888888888765543
No 88
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=21.77 E-value=2.4e+02 Score=24.05 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHH
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGEL 396 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El 396 (432)
.+.-+++++|.|+.... .||-++|+.|..|=.....+++.|+.-+
T Consensus 14 ~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~El~~lr~~~~~l~~~i 58 (111)
T 2v66_B 14 RLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLHKYV 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889998887654 4566667766666666666666655433
No 89
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.68 E-value=1.7e+02 Score=26.41 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHH
Q 041775 350 LVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELD 397 (432)
Q Consensus 350 ~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~ 397 (432)
+.+....+..|+..|+.-|+|=...|.-|+.|--+-.-|-+.+++.+.
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~ 120 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLS 120 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555444555555444443333333333333
No 90
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.44 E-value=1.4e+02 Score=30.32 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 349 ~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
.|-..+.+++.++..|+.+.++....+..++|+=.....+|.+|.-++..||-
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34566677777777777777777777777777766777888899999988873
No 91
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.99 E-value=80 Score=24.69 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=20.2
Q ss_pred hhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 041775 370 EAEVTISKLTEENRLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 370 ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k 402 (432)
.|-.-|..|.++...-.+|.+.|++|...|+.+
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666555566666666666666643
No 92
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.95 E-value=85 Score=25.66 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=31.4
Q ss_pred hhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhhc
Q 041775 365 QSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSK 402 (432)
Q Consensus 365 e~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~k 402 (432)
++.++++...|..++-|+....-|.+.|+.++..||.|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66677777788888888888888899999999998864
No 93
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=20.92 E-value=21 Score=37.72 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=3.3
Q ss_pred HhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 364 LQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 364 le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
|+.++.||+..|.+|.+|+...-.|...||+|+..-|.
T Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~ 447 (575)
T 2i1j_A 410 LEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARR 447 (575)
T ss_dssp --------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777777777777777776665554
No 94
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.86 E-value=73 Score=25.55 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHh
Q 041775 353 DIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLR 400 (432)
Q Consensus 353 d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr 400 (432)
+++.|++..+.||..|.+++. ++.-+....-..-..|..||..+|
T Consensus 4 eie~L~~q~~~Le~~l~e~E~---~~~~~l~~~q~~i~~lE~el~~~r 48 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLED---SLARERDTSRRLLAEKEREMAEMR 48 (86)
T ss_dssp --------CTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
No 95
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.78 E-value=1.2e+02 Score=28.83 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=32.6
Q ss_pred hHHHhHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhhhhchHHHHHHHHHHHHHhh
Q 041775 345 AEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRS 401 (432)
Q Consensus 345 ~~~~~~~~d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~~~~~qe~~~Lq~El~~lr~ 401 (432)
....+++.=.-.||+||..|+.+|+ +.++||.+..-+-..-.+-++.+|-
T Consensus 164 ~Ik~yLa~R~~~lK~kl~~l~~~L~-------~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 164 VVKQFLAFRLSEVKGTCHDLSDDLS-------RTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666677777777776665 5566777666666666666666664
No 96
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.06 E-value=93 Score=31.32 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhHhhhhhhhhhhhhhhhhhh
Q 041775 353 DIEEMKSKLNELQSKLSEAEVTISKLTEEN 382 (432)
Q Consensus 353 d~~~l~~kl~~le~kl~ea~~~I~kL~Ee~ 382 (432)
++++|+.++.+|+.+.++-+..|.++.++.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 33 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGM 33 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
Done!