BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041777
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LJK|A Chain A, Solution Structure Of The Oncogenic-Potential Mien1
Protein
Length = 117
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 82 TIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSR 133
+ + + G I+S L +GAFE+ +G+LVFSKL FP E +L E + R
Sbjct: 46 SAVKEQYPGIEIESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRR 97
>pdb|2PM6|A Chain A, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|C Chain C, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
Length = 399
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 55 GGEQIFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNS 100
GE+ FQ++ P +SL N TI GN IKS +KNS
Sbjct: 122 DGEEFFQQIETNFQPEGDFSLSGNIEQTISKNLVSGN-IKSAVKNS 166
>pdb|2PM7|A Chain A, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|C Chain C, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 399
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 55 GGEQIFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNS 100
GE+ FQ++ P +SL N TI GN IKS +KNS
Sbjct: 122 DGEEFFQQIETNFQPEGDFSLSGNIEQTISKNLVSGN-IKSAVKNS 166
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 70 PWYYSLRANRHGTI-ITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKL 116
PW+ ++ HGT I W L +Y S K FE+F D ++ +K+
Sbjct: 78 PWFGGVKQPAHGTARIRLWQLSHYYISVHKVRLEFELFSDLNIIEAKV 125
>pdb|4GEM|A Chain A, Crystal Structure Of Zucchini (K171a)
pdb|4GEM|B Chain B, Crystal Structure Of Zucchini (K171a)
Length = 220
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 85 TTWFLGNYIKSCLKNSGAFEVFCDGELVFSK 115
T+ FL + IK L+ + DGE+V+SK
Sbjct: 82 TSLFLADSIKRALQRGVIIRIISDGEMVYSK 112
>pdb|4GEL|A Chain A, Crystal Structure Of Zucchini
pdb|4GEL|B Chain B, Crystal Structure Of Zucchini
Length = 220
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 85 TTWFLGNYIKSCLKNSGAFEVFCDGELVFSK 115
T+ FL + IK L+ + DGE+V+SK
Sbjct: 82 TSLFLADSIKRALQRGVIIRIISDGEMVYSK 112
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|E Chain E, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 370
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 79 RHGTIITTWFLGNYIKSCLK------NSGAFEVFCDGELVFSK 115
R + I F+G +KSCLK S FEVFCD L K
Sbjct: 170 REDSKIVDLFVGQ-LKSCLKCQACGYRSTTFEVFCDLSLPIPK 211
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|C Chain C, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|E Chain E, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|G Chain G, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
Length = 355
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 79 RHGTIITTWFLGNYIKSCLK------NSGAFEVFCDGELVFSK 115
R + I F+G +KSCLK S FEVFCD L K
Sbjct: 157 REDSKIVDLFVGQ-LKSCLKCQACGYRSTTFEVFCDLSLPIPK 198
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|C Chain C, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 373
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 79 RHGTIITTWFLGNYIKSCLK------NSGAFEVFCDGELVFSK 115
R + I F+G +KSCLK S FEVFCD L K
Sbjct: 176 REDSKIVDLFVGQ-LKSCLKCQACGYRSTTFEVFCDLSLPIPK 217
>pdb|4GEN|A Chain A, Crystal Structure Of Zucchini (Monomer)
Length = 169
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 85 TTWFLGNYIKSCLKNSGAFEVFCDGELVFSK 115
T+ FL + IK L+ + DGE V+SK
Sbjct: 34 TSLFLADSIKRALQRGVIIRIISDGEXVYSK 64
>pdb|4H4A|A Chain A, Crystal Structure Of The C-Terminal Domain Of Drosophila
Melanogaster Zucchini
Length = 169
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 85 TTWFLGNYIKSCLKNSGAFEVFCDGELVFSK 115
T+ FL + IK L+ + DGE V+SK
Sbjct: 31 TSLFLADSIKRALQRGVIIRIISDGEXVYSK 61
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 103 FEVFCDGELVFSKLME---QRFPGEFELRELVSRKLYNLRNSEGFSGG 147
F+ + G FS L++ +RF EFEL++L K N+ GF G
Sbjct: 823 FQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNM--DVGFGSG 868
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 103 FEVFCDGELVFSKLME---QRFPGEFELRELVSRKLYNLRNSEGFSGG 147
F+ + G FS L++ +RF EFEL++L K N+ GF G
Sbjct: 823 FQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNM--DVGFGSG 868
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 103 FEVFCDGELVFSKLME---QRFPGEFELRELVSRKLYNLRNSEGFSGG 147
F+ + G FS L++ +RF EFEL++L K N+ GF G
Sbjct: 824 FQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNM--DVGFGSG 869
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 103 FEVFCDGELVFSKLME---QRFPGEFELRELVSRKLYNLRNSEGFSGG 147
F+ + G FS L++ +RF EFEL++L K N+ GF G
Sbjct: 867 FQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNM--DVGFGSG 912
>pdb|2FA8|A Chain A, Crystal Structure Of The Putative Selenoprotein W-Related
Family Protein From Agrobacterium Tumefaciens
pdb|2FA8|B Chain B, Crystal Structure Of The Putative Selenoprotein W-Related
Family Protein From Agrobacterium Tumefaciens
pdb|2FA8|C Chain C, Crystal Structure Of The Putative Selenoprotein W-Related
Family Protein From Agrobacterium Tumefaciens
pdb|2FA8|D Chain D, Crystal Structure Of The Putative Selenoprotein W-Related
Family Protein From Agrobacterium Tumefaciens
Length = 105
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELV 131
G FE+ DG +++ + + FPG EL++ +
Sbjct: 50 GLFEITVDGTIIWERKRDGGFPGPKELKQRI 80
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 104 EVFCDGELVFSKLMEQRFPGEFE 126
EVF D +LVFSK ++ F G+ +
Sbjct: 99 EVFLDSKLVFSKPQDRLFAGQID 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.144 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,696,167
Number of Sequences: 62578
Number of extensions: 177851
Number of successful extensions: 462
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 18
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)