Query 041777
Match_columns 149
No_of_seqs 161 out of 313
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 10:32:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3286 Selenoprotein T [Gener 100.0 3E-57 6.5E-62 366.3 11.1 143 1-144 79-221 (226)
2 PF10262 Rdx: Rdx family; Int 99.8 1E-19 2.2E-24 126.0 7.3 65 1-134 10-76 (76)
3 TIGR02174 CXXU_selWTH selT/sel 99.8 4.6E-19 1E-23 122.2 8.0 65 1-132 8-72 (72)
4 COG3526 Uncharacterized protei 99.2 1.8E-11 3.8E-16 88.3 5.4 44 98-141 45-88 (99)
5 PF13192 Thioredoxin_3: Thiore 87.6 0.73 1.6E-05 31.0 3.2 24 105-132 53-76 (76)
6 PF06953 ArsD: Arsenical resis 74.2 4.9 0.00011 30.5 3.7 34 104-141 75-108 (123)
7 TIGR00412 redox_disulf_2 small 63.2 8 0.00017 25.9 2.6 26 101-132 51-76 (76)
8 KOG2550 IMP dehydrogenase/GMP 61.2 8.1 0.00018 35.6 3.0 30 1-30 272-301 (503)
9 PF03808 Glyco_tran_WecB: Glyc 58.7 13 0.00028 28.9 3.4 26 5-30 58-83 (172)
10 PLN02496 probable phosphopanto 58.6 11 0.00024 31.1 3.1 50 97-148 158-208 (209)
11 COG1060 ThiH Thiamine biosynth 54.7 25 0.00055 31.2 5.0 105 12-134 237-349 (370)
12 PF07293 DUF1450: Protein of u 54.5 24 0.00053 24.8 3.9 28 105-139 49-76 (78)
13 PF02767 DNA_pol3_beta_2: DNA 54.0 17 0.00036 26.1 3.2 24 100-123 93-116 (116)
14 PF08141 SspH: Small acid-solu 53.5 17 0.00036 24.3 2.8 17 97-113 10-26 (58)
15 PRK10739 putative antibiotic t 49.3 21 0.00047 28.9 3.4 44 27-71 29-72 (197)
16 PRK13669 hypothetical protein; 47.9 31 0.00066 24.5 3.6 31 101-139 46-76 (78)
17 cd06533 Glyco_transf_WecG_TagA 47.9 25 0.00053 27.3 3.4 24 6-29 57-80 (171)
18 PF14099 Polysacc_lyase: Polys 44.4 15 0.00033 28.9 1.8 24 99-122 167-190 (224)
19 PF05265 DUF723: Protein of un 44.3 27 0.00058 23.7 2.7 27 5-31 2-31 (60)
20 PF01914 MarC: MarC family int 44.2 28 0.00061 28.0 3.4 44 27-71 29-72 (203)
21 PF12221 HflK_N: Bacterial mem 44.0 26 0.00057 21.9 2.5 20 118-137 17-36 (42)
22 COG1232 HemY Protoporphyrinoge 43.2 40 0.00087 30.7 4.5 44 3-46 397-440 (444)
23 smart00776 NPCBM This novel pu 42.8 27 0.00058 26.8 2.9 17 99-115 83-99 (145)
24 PF04457 DUF504: Protein of un 41.6 18 0.00039 23.6 1.5 12 104-115 44-56 (56)
25 cd03715 RT_ZFREV_like RT_ZFREV 41.6 22 0.00048 27.9 2.3 19 101-119 154-172 (210)
26 PF11208 DUF2992: Protein of u 38.2 81 0.0018 24.2 4.9 37 101-137 12-48 (132)
27 PRK14946 DNA polymerase III su 36.9 43 0.00094 29.2 3.6 29 100-128 217-245 (366)
28 PF08531 Bac_rhamnosid_N: Alph 36.8 31 0.00067 26.8 2.4 17 98-114 11-27 (172)
29 TIGR02861 SASP_H small acid-so 36.6 39 0.00085 22.6 2.6 17 97-113 10-26 (58)
30 TIGR00427 membrane protein, Ma 36.4 44 0.00096 27.0 3.4 44 27-71 32-75 (201)
31 cd04502 SGNH_hydrolase_like_7 35.5 38 0.00082 25.1 2.7 22 5-26 73-94 (171)
32 KOG2535 RNA polymerase II elon 35.5 41 0.00089 30.8 3.2 43 3-45 300-363 (554)
33 TIGR00696 wecB_tagA_cpsF bacte 34.5 45 0.00097 26.4 3.0 22 6-27 59-80 (177)
34 PRK01625 sspH acid-soluble spo 33.6 48 0.001 22.3 2.6 17 97-113 10-26 (59)
35 cd01833 XynB_like SGNH_hydrola 33.6 52 0.0011 23.8 3.1 29 4-32 62-90 (157)
36 COG2095 MarC Multiple antibiot 33.2 59 0.0013 26.6 3.6 63 27-97 32-95 (203)
37 PF06236 MelC1: Tyrosinase co- 32.9 78 0.0017 24.4 4.0 43 98-140 66-119 (125)
38 PRK11840 bifunctional sulfur c 32.6 52 0.0011 29.1 3.4 36 98-133 63-105 (326)
39 PRK03174 sspH acid-soluble spo 32.4 51 0.0011 22.2 2.6 17 97-113 10-26 (59)
40 cd01823 SEST_like SEST_like. A 31.9 54 0.0012 26.0 3.2 30 4-33 129-158 (259)
41 PRK11111 hypothetical protein; 31.7 58 0.0013 26.7 3.4 44 27-71 35-78 (214)
42 PF14307 Glyco_tran_WbsX: Glyc 31.6 71 0.0015 27.5 4.0 45 91-137 142-186 (345)
43 TIGR00411 redox_disulf_1 small 31.4 1.1E+02 0.0023 19.5 4.1 16 120-135 67-82 (82)
44 cd01647 RT_LTR RT_LTR: Reverse 31.2 27 0.00059 25.0 1.2 32 100-131 120-151 (177)
45 cd06867 PX_SNX41_42 The phosph 31.2 35 0.00075 24.6 1.8 29 6-39 35-63 (112)
46 PRK06673 DNA polymerase III su 30.7 58 0.0013 28.3 3.4 25 103-127 228-252 (376)
47 TIGR02022 hutF formiminoglutam 30.6 81 0.0018 28.0 4.3 34 99-135 417-450 (455)
48 cd06881 PX_SNX15_like The phos 30.5 23 0.00049 26.0 0.7 31 6-37 45-75 (117)
49 TIGR02113 coaC_strep phosphopa 30.4 43 0.00092 26.5 2.3 39 97-135 138-177 (177)
50 KOG3491 Predicted membrane pro 30.3 52 0.0011 22.5 2.3 46 7-63 10-58 (65)
51 PRK14942 DNA polymerase III su 30.1 68 0.0015 28.0 3.7 23 105-127 232-254 (373)
52 PF05798 Phage_FRD3: Bacteriop 29.3 51 0.0011 23.1 2.2 19 8-26 11-29 (75)
53 PF03219 TLC: TLC ATP/ADP tran 29.1 1.1E+02 0.0024 28.1 5.1 48 10-66 302-349 (491)
54 smart00758 PA14 domain in bact 29.1 43 0.00094 24.1 2.0 20 97-116 64-83 (136)
55 PRK14944 DNA polymerase III su 29.1 71 0.0015 27.9 3.7 26 102-127 226-251 (375)
56 COG0031 CysK Cysteine synthase 28.2 59 0.0013 28.3 2.9 28 1-28 176-203 (300)
57 TIGR00769 AAA ADP/ATP carrier 28.2 1.2E+02 0.0027 27.6 5.2 49 9-66 285-333 (472)
58 PF07619 DUF1581: Protein of u 28.1 85 0.0018 22.6 3.3 25 98-122 4-29 (84)
59 cd01841 NnaC_like NnaC (CMP-Ne 27.8 73 0.0016 23.4 3.1 29 4-32 73-101 (174)
60 cd06555 ASCH_PF0470_like ASC-1 26.4 74 0.0016 23.6 2.8 47 100-147 17-84 (109)
61 PF11008 DUF2846: Protein of u 26.2 58 0.0013 23.6 2.2 22 99-121 39-60 (117)
62 smart00030 CLb CLUSTERIN Beta 26.2 63 0.0014 26.9 2.6 36 88-123 113-148 (206)
63 cd01645 RT_Rtv RT_Rtv: Reverse 25.8 74 0.0016 25.2 2.9 32 102-133 159-190 (213)
64 PF14143 YrhC: YrhC-like prote 25.1 2.3E+02 0.0051 19.7 5.0 56 36-94 2-57 (72)
65 PF06183 DinI: DinI-like famil 24.7 75 0.0016 21.4 2.4 16 9-24 11-26 (65)
66 PRK09381 trxA thioredoxin; Pro 24.5 2.2E+02 0.0047 19.4 4.9 33 100-135 76-108 (109)
67 cd02969 PRX_like1 Peroxiredoxi 24.5 3E+02 0.0065 20.5 6.6 38 103-140 114-157 (171)
68 PF06624 RAMP4: Ribosome assoc 24.3 41 0.00088 22.8 1.0 48 5-63 8-58 (63)
69 PF11721 Malectin: Di-glucose 24.2 77 0.0017 24.6 2.7 17 101-117 104-120 (174)
70 KOG2875 8-oxoguanine DNA glyco 23.9 79 0.0017 27.9 2.9 41 90-136 136-177 (323)
71 cd06861 PX_Vps5p The phosphoin 23.5 36 0.00078 24.6 0.7 27 6-37 44-70 (112)
72 PF08305 NPCBM: NPCBM/NEW2 dom 23.2 78 0.0017 23.7 2.5 18 99-116 79-96 (142)
73 cd04506 SGNH_hydrolase_YpmR_li 23.0 98 0.0021 23.5 3.1 26 4-29 104-129 (204)
74 cd07287 PX_RPK118_like The pho 22.9 34 0.00073 25.5 0.4 32 6-37 45-76 (118)
75 cd06859 PX_SNX1_2_like The pho 22.8 54 0.0012 23.3 1.5 27 6-37 44-70 (114)
76 cd03412 CbiK_N Anaerobic cobal 22.7 95 0.0021 22.9 2.8 23 5-27 16-38 (127)
77 cd01844 SGNH_hydrolase_like_6 22.5 2E+02 0.0043 21.4 4.6 25 4-28 76-100 (177)
78 PHA02141 hypothetical protein 22.4 96 0.0021 22.7 2.7 26 69-95 6-31 (105)
79 PF04385 FAINT: Domain of unkn 22.0 1.1E+02 0.0025 18.7 2.8 19 102-120 35-53 (78)
80 PRK09229 N-formimino-L-glutama 21.9 1.5E+02 0.0033 26.1 4.5 33 99-134 417-449 (456)
81 cd03714 RT_DIRS1 RT_DIRS1: Rev 21.8 2.9E+02 0.0064 19.4 5.6 16 101-116 61-76 (119)
82 cd01828 sialate_O-acetylestera 21.6 2.2E+02 0.0048 20.7 4.7 29 4-32 70-98 (169)
83 PF07691 PA14: PA14 domain; I 21.3 99 0.0021 22.1 2.6 19 98-116 67-85 (145)
84 cd01836 FeeA_FeeB_like SGNH_hy 21.0 1.2E+02 0.0027 22.6 3.2 28 4-31 89-116 (191)
85 CHL00173 cpeA phycoerythrin al 20.9 2.3E+02 0.005 22.5 4.8 60 12-73 56-128 (164)
86 KOG0855 Alkyl hydroperoxide re 20.5 47 0.001 27.4 0.8 14 1-14 110-123 (211)
87 TIGR01338 phycocy_alpha phycoc 20.2 2.9E+02 0.0063 21.9 5.3 60 12-73 55-129 (161)
88 PF15059 Speriolin_C: Sperioli 20.2 66 0.0014 25.4 1.6 43 1-44 69-119 (146)
89 KOG4749 Inositol polyphosphate 20.1 1.3E+02 0.0029 27.0 3.6 33 100-132 203-235 (375)
No 1
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=100.00 E-value=3e-57 Score=366.32 Aligned_cols=143 Identities=32% Similarity=0.510 Sum_probs=139.7
Q ss_pred CCcchhhHHHHHHHHHhhCCCcEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchhHHHhhhcch
Q 041777 1 MCFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRH 80 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~~~~~~~NK~ 80 (149)
|||||++|+||+++|+++||+++|+|+|||||+||++|||+++++|+++|++|+.|++||+++|+. .|+||+|.++||+
T Consensus 79 SCgYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl~-~P~iwqh~~aNkf 157 (226)
T KOG3286|consen 79 SCGYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGLG-YPSIWQHAQANKF 157 (226)
T ss_pred ecCcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceecCC-CcHHHHHHHhhhH
Confidence 899999999999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred hhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhccccccCCc
Q 041777 81 GTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNSEGF 144 (149)
Q Consensus 81 ~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~~~~ 144 (149)
++|||+|||||++|++|+|||||||++||++||||+++||+|+++|+.|+|+++|...+.++..
T Consensus 158 ~scm~vf~lGN~les~L~StGAFEI~lndepVwSKl~~gr~Ps~~el~qlid~~L~~~~~~~~~ 221 (226)
T KOG3286|consen 158 YSCMMVFFLGNMLESQLISTGAFEITLNDEPVWSKLESGRLPSPQELVQLIDNQLKLNVKLPGN 221 (226)
T ss_pred HHHHHHHHHHHHHHHHhhccCcEEEEECCEeeeehhhccCCCCHHHHHHHHHHhhhheeecCCC
Confidence 9999999999999999999999999999999999999999999999999999999988887754
No 2
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=99.80 E-value=1e-19 Score=125.97 Aligned_cols=65 Identities=38% Similarity=0.595 Sum_probs=59.8
Q ss_pred CCcchhhHHHHHHHHHhhCCC--cEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchhHHHhhhc
Q 041777 1 MCFCRGHAMTTKHMLEEAFPG--ITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRAN 78 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~--i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~~~~~~~N 78 (149)
+|||+..|.++++.|+++||+ ..|++
T Consensus 10 ~C~~~~~a~~l~~~l~~~fp~~~~~v~~---------------------------------------------------- 37 (76)
T PF10262_consen 10 SCGYRPRALELAQELLQTFPDRIAEVEL---------------------------------------------------- 37 (76)
T ss_dssp TTTCHHHHHHHHHHHHHHSTTTCSEEEE----------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHCCCcceEEEE----------------------------------------------------
Confidence 699999999999999999999 78988
Q ss_pred chhhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHH
Q 041777 79 RHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRK 134 (149)
Q Consensus 79 K~~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~ 134 (149)
...++|+|||++||++||||+++|+||+++||+++|++|
T Consensus 38 -----------------~~~~~G~FEV~v~g~lI~SK~~~g~fP~~~~i~~~I~~~ 76 (76)
T PF10262_consen 38 -----------------SPGSTGAFEVTVNGELIFSKLESGRFPDPDEIVQLIRDH 76 (76)
T ss_dssp -----------------EEESTT-EEEEETTEEEEEHHHHTSSS-HHHHHHHHHHH
T ss_pred -----------------EeccCCEEEEEEccEEEEEehhcCCCCCHHHHHHHHhcC
Confidence 457899999999999999999999999999999999986
No 3
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=99.79 E-value=4.6e-19 Score=122.16 Aligned_cols=65 Identities=38% Similarity=0.585 Sum_probs=62.3
Q ss_pred CCcchhhHHHHHHHHHhhCCCcEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchhHHHhhhcch
Q 041777 1 MCFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRH 80 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~~~~~~~NK~ 80 (149)
+|||+..|.++++.|.++||+..+.++++||
T Consensus 8 ~C~y~~Ra~~l~q~L~~~Fp~~~v~~~~~~~------------------------------------------------- 38 (72)
T TIGR02174 8 SCGYKPRAAWLKQELLEEFPDLEIEGENTPP------------------------------------------------- 38 (72)
T ss_pred CCCChHHHHHHHHHHHHHCCCCeeEEeeecC-------------------------------------------------
Confidence 7999999999999999999999999998876
Q ss_pred hhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHH
Q 041777 81 GTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVS 132 (149)
Q Consensus 81 ~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~ 132 (149)
++|+|||++||++||||+++|+||+++||+++|+
T Consensus 39 ------------------~~G~Fev~~~g~~v~sk~~~~~fp~~~~~~~~ir 72 (72)
T TIGR02174 39 ------------------TTGAFEVTVNGQLVWSKLRGGGFPEPEELKQLIR 72 (72)
T ss_pred ------------------CCcEEEEEECCEEEEEeccCCCCCCHHHHHHhhC
Confidence 8999999999999999999999999999999985
No 4
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.8e-11 Score=88.34 Aligned_cols=44 Identities=27% Similarity=0.502 Sum_probs=41.5
Q ss_pred cCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccccc
Q 041777 98 KNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNS 141 (149)
Q Consensus 98 ~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~ 141 (149)
.++|.|||++||++||.|+++|+||++++|+|.|+|.++|+|-.
T Consensus 45 gTGG~FeI~~dg~~iWeRKrdGGFP~ak~LKQrvRD~idPeRDL 88 (99)
T COG3526 45 GTGGVFEITCDGVLIWERKRDGGFPEAKVLKQRVRDLIDPERDL 88 (99)
T ss_pred CCCceEEEEECCEEEEEeeccCCCCchHHHHHHHHhhcCccccc
Confidence 46899999999999999999999999999999999999999854
No 5
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=87.60 E-value=0.73 Score=30.98 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=18.8
Q ss_pred EEECCEEEEeecccCCCCCHHHHHHHHH
Q 041777 105 VFCDGELVFSKLMEQRFPGEFELRELVS 132 (149)
Q Consensus 105 V~~ng~lV~SKl~~grfP~~~el~~~I~ 132 (149)
+.+||+.+|+ |+.|+.+||.++|+
T Consensus 53 lvIng~~~~~----G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 53 LVINGKVVFV----GRVPSKEELKELLE 76 (76)
T ss_dssp EEETTEEEEE----SS--HHHHHHHHHH
T ss_pred EEECCEEEEE----ecCCCHHHHHHHhC
Confidence 5789999887 88999999999874
No 6
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=74.20 E-value=4.9 Score=30.54 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=21.9
Q ss_pred EEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccccc
Q 041777 104 EVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNS 141 (149)
Q Consensus 104 EV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~ 141 (149)
-+.|||+++.+ |++|+.+||.+...-.....+..
T Consensus 75 itlVdGeiv~~----G~YPt~eEl~~~~~i~~~~~~~~ 108 (123)
T PF06953_consen 75 ITLVDGEIVKT----GRYPTNEELAEWLGISFSELEKE 108 (123)
T ss_dssp EEEETTEEEEE----SS---HHHHHHHHT--GGGTT--
T ss_pred EEEECCEEEEe----cCCCCHHHHHHHhCCCccccccc
Confidence 46789999875 99999999999987666555443
No 7
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=63.17 E-value=8 Score=25.89 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=19.2
Q ss_pred ceEEEEECCEEEEeecccCCCCCHHHHHHHHH
Q 041777 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELVS 132 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~ 132 (149)
=++-| ||++++ +|+.|+.++|.+.++
T Consensus 51 Pti~i--~G~~~~----~G~~~~~~~l~~~l~ 76 (76)
T TIGR00412 51 PGVAV--DGELVI----MGKIPSKEEIKEILK 76 (76)
T ss_pred CEEEE--CCEEEE----EeccCCHHHHHHHhC
Confidence 34444 999985 477899999988763
No 8
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=61.18 E-value=8.1 Score=35.57 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=25.8
Q ss_pred CCcchhhHHHHHHHHHhhCCCcEEecccCC
Q 041777 1 MCFCRGHAMTTKHMLEEAFPGITVTLANHP 30 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~i~i~g~nYp 30 (149)
|-|+.--+.++-++++++||+++|.|.|=-
T Consensus 272 SqGnS~~qiemik~iK~~yP~l~ViaGNVV 301 (503)
T KOG2550|consen 272 SQGNSIYQLEMIKYIKETYPDLQIIAGNVV 301 (503)
T ss_pred CCCcchhHHHHHHHHHhhCCCceeecccee
Confidence 456667788999999999999999999864
No 9
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=58.69 E-value=13 Score=28.87 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHhhCCCcEEecccCC
Q 041777 5 RGHAMTTKHMLEEAFPGITVTLANHP 30 (149)
Q Consensus 5 r~~f~~~~~~l~~~yP~i~i~g~nYp 30 (149)
..+-++.++.|+++||+++|.|..-+
T Consensus 58 ~~~~~~~~~~l~~~yP~l~ivg~~~g 83 (172)
T PF03808_consen 58 EEVLEKAAANLRRRYPGLRIVGYHHG 83 (172)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34567889999999999999996544
No 10
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=58.57 E-value=11 Score=31.11 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=32.4
Q ss_pred hcCCceEEEEE-CCEEEEeecccCCCCCHHHHHHHHHHHhccccccCCcCCCC
Q 041777 97 LKNSGAFEVFC-DGELVFSKLMEQRFPGEFELRELVSRKLYNLRNSEGFSGGL 148 (149)
Q Consensus 97 L~~~GaFEV~~-ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~~~~~~~~ 148 (149)
|...|..-|-= .|++--...-.||+|+++||.+.|.+.+.. .-+..+||+
T Consensus 158 L~~~G~~vi~P~~g~lAcg~~G~Grm~ep~~I~~~i~~~l~~--~~~~~~~~~ 208 (209)
T PLN02496 158 IDELGISLIPPVTKRLACGDYGNGAMAEPSLIYSTVRLFLES--RAQSQSGGV 208 (209)
T ss_pred HHHCCCEEECCCcCcccCCCcCCCCCCCHHHHHHHHHHHHhh--ccccccCCC
Confidence 44456554432 244433334579999999999999998866 444556664
No 11
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=54.70 E-value=25 Score=31.15 Aligned_cols=105 Identities=11% Similarity=0.017 Sum_probs=64.5
Q ss_pred HHHHHhhCCCc-EEecccCCCchHH--HHH---HHHHhHHHHHHHHHHhhCchhhhhcCCCCCchhHHHhhhcchhhHHH
Q 041777 12 KHMLEEAFPGI-TVTLANHPRPLLK--RLM---GIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRHGTIIT 85 (149)
Q Consensus 12 ~~~l~~~yP~i-~i~g~nYpp~~~~--~~l---ak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~~~~~~~NK~~~~~~ 85 (149)
-+.|+++|+++ .+..-+|-|-... ... +....+++...++-++.+.. +.. ..|+|+. .....+-+.
T Consensus 237 ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~----i~~-~~a~w~~---~g~~~~~~~ 308 (370)
T COG1060 237 IRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNN----ISN-IQASWLR---DGVILAQAA 308 (370)
T ss_pred HHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccCc----ccc-ccCcccc---cchHHHHHH
Confidence 35689999997 5666666654442 222 56788888889998887754 332 2577753 344333344
Q ss_pred HHhhHHHHhhhhcCCceEEEEECCEEEEeecc--cCCCCCHHHHHHHHHHH
Q 041777 86 TWFLGNYIKSCLKNSGAFEVFCDGELVFSKLM--EQRFPGEFELRELVSRK 134 (149)
Q Consensus 86 ~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~--~grfP~~~el~~~I~~~ 134 (149)
..+.+|=+ .++..+ +-|.+... ++..|+.+||.++|++.
T Consensus 309 l~~GanD~-----ggt~~~-----E~v~~~a~~~~~~~~~~eel~~~i~~a 349 (370)
T COG1060 309 LLSGANDL-----GGTGYE-----EKVNPAAGAFSGDWRSVEELAALIKEA 349 (370)
T ss_pred HHhCcccC-----cCCCcc-----cccccccccccCCCCCHHHHHHHHHHc
Confidence 44444443 334444 44443222 25689999999999874
No 12
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=54.53 E-value=24 Score=24.81 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=23.6
Q ss_pred EEECCEEEEeecccCCCCCHHHHHHHHHHHhcccc
Q 041777 105 VFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLR 139 (149)
Q Consensus 105 V~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~ 139 (149)
..|||+.|. -++++||.+.|.+++...+
T Consensus 49 AlVnG~~V~-------A~t~eeL~~kI~~~i~e~~ 76 (78)
T PF07293_consen 49 ALVNGEIVA-------AETAEELLEKIKEKIEENP 76 (78)
T ss_pred EEECCEEEe-------cCCHHHHHHHHHHHHhccc
Confidence 468999996 4899999999999997654
No 13
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3T0P_B 3P16_A 3RB9_B 2AWA_C 1VPK_A 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A ....
Probab=54.03 E-value=17 Score=26.10 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=15.6
Q ss_pred CceEEEEECCEEEEeecccCCCCC
Q 041777 100 SGAFEVFCDGELVFSKLMEQRFPG 123 (149)
Q Consensus 100 ~GaFEV~~ng~lV~SKl~~grfP~ 123 (149)
.+...+..++..+.||+-+|.||+
T Consensus 93 ~~~i~f~~~~~~~~srli~g~yPd 116 (116)
T PF02767_consen 93 DNQIIFKFDNIEITSRLIDGEYPD 116 (116)
T ss_dssp SSEEEEEESSEEEEEE-BSS----
T ss_pred CCEEEEEECCEEEEEEEecccCCC
Confidence 466667778889999999999996
No 14
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=53.49 E-value=17 Score=24.34 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=15.1
Q ss_pred hcCCceEEEEECCEEEE
Q 041777 97 LKNSGAFEVFCDGELVF 113 (149)
Q Consensus 97 L~~~GaFEV~~ng~lV~ 113 (149)
+.|....+|++||++||
T Consensus 10 ~~S~~~i~V~y~G~pV~ 26 (58)
T PF08141_consen 10 AESPDMIEVTYNGVPVW 26 (58)
T ss_pred HcCCceEEEEECCEEEE
Confidence 45778889999999999
No 15
>PRK10739 putative antibiotic transporter; Provisional
Probab=49.25 E-value=21 Score=28.85 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=37.0
Q ss_pred ccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchh
Q 041777 27 ANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPW 71 (149)
Q Consensus 27 ~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~ 71 (149)
+++++..-++..-+..-++-..++...++|+.++..+|+. .|+.
T Consensus 29 ~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIs-l~af 72 (197)
T PRK10739 29 KHLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLR-TETV 72 (197)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHH
Confidence 5677788888888888888888888999999999999996 5553
No 16
>PRK13669 hypothetical protein; Provisional
Probab=47.93 E-value=31 Score=24.48 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=24.7
Q ss_pred ceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccc
Q 041777 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLR 139 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~ 139 (149)
+.| ..|||+.|.- ++++||.+.|.+++...+
T Consensus 46 ~~F-AlVng~~V~a-------~t~eeL~~kI~~~i~e~~ 76 (78)
T PRK13669 46 GLF-ALVNGEVVEG-------ETPEELVENIYAHLEENP 76 (78)
T ss_pred Cce-EEECCeEeec-------CCHHHHHHHHHHHHhhcC
Confidence 444 4689999964 899999999999987654
No 17
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=47.87 E-value=25 Score=27.31 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhhCCCcEEecccC
Q 041777 6 GHAMTTKHMLEEAFPGITVTLANH 29 (149)
Q Consensus 6 ~~f~~~~~~l~~~yP~i~i~g~nY 29 (149)
.+-++..+.|+++||+++|.|..-
T Consensus 57 ~~~~~~~~~l~~~yp~l~i~g~~~ 80 (171)
T cd06533 57 EVLEKAAERLRARYPGLKIVGYHH 80 (171)
T ss_pred HHHHHHHHHHHHHCCCcEEEEecC
Confidence 455677788999999999999533
No 18
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=44.40 E-value=15 Score=28.93 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=18.8
Q ss_pred CCceEEEEECCEEEEeecccCCCC
Q 041777 99 NSGAFEVFCDGELVFSKLMEQRFP 122 (149)
Q Consensus 99 ~~GaFEV~~ng~lV~SKl~~grfP 122 (149)
++|.++|++||++|++.......+
T Consensus 167 ~~G~~~vw~nG~~v~~~~g~~~~~ 190 (224)
T PF14099_consen 167 SDGFLEVWLNGKLVVDYKGPTGYN 190 (224)
T ss_dssp CTEEEEEEECCEECCEEEEEECEC
T ss_pred CCEEEEEEECCEEEEEEeCCceeC
Confidence 689999999999999865543333
No 19
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=44.29 E-value=27 Score=23.67 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHhhCCCc---EEecccCCC
Q 041777 5 RGHAMTTKHMLEEAFPGI---TVTLANHPR 31 (149)
Q Consensus 5 r~~f~~~~~~l~~~yP~i---~i~g~nYpp 31 (149)
+..|++...-++++||++ +..|..||.
T Consensus 2 ~~t~~~~~~r~~e~Fp~~slvef~g~~~Pv 31 (60)
T PF05265_consen 2 AMTFESAASRFEEKFPHYSLVEFSGVATPV 31 (60)
T ss_pred ceeHHHHHHHHHHHCCCceEEEEeCCCCce
Confidence 467999999999999995 566777764
No 20
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=44.23 E-value=28 Score=28.04 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=38.1
Q ss_pred ccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchh
Q 041777 27 ANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPW 71 (149)
Q Consensus 27 ~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~ 71 (149)
+++++..-++..-+..-++-..+++..++|+.++..+|+. .|+.
T Consensus 29 ~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIs-l~af 72 (203)
T PF01914_consen 29 KGMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGIS-LPAF 72 (203)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHH
Confidence 5788888889999999999999999999999999999995 5553
No 21
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=44.01 E-value=26 Score=21.94 Aligned_cols=20 Identities=30% Similarity=0.122 Sum_probs=16.8
Q ss_pred cCCCCCHHHHHHHHHHHhcc
Q 041777 118 EQRFPGEFELRELVSRKLYN 137 (149)
Q Consensus 118 ~grfP~~~el~~~I~~~l~~ 137 (149)
..+.|+.+||.+.+.++|..
T Consensus 17 ~~gPPDLdel~r~l~~kl~~ 36 (42)
T PF12221_consen 17 NQGPPDLDELFRKLQDKLGG 36 (42)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 34599999999999999853
No 22
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=43.16 E-value=40 Score=30.70 Aligned_cols=44 Identities=14% Similarity=0.009 Sum_probs=36.0
Q ss_pred cchhhHHHHHHHHHhhCCCcEEecccCCCchHHHHHHHHHhHHH
Q 041777 3 FCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQ 46 (149)
Q Consensus 3 gyr~~f~~~~~~l~~~yP~i~i~g~nYpp~~~~~~lak~l~~~q 46 (149)
||++.=++++..|.+.||++.+.|.+|.=+..+..+++.-..++
T Consensus 397 G~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~d~I~~g~~aa~ 440 (444)
T COG1232 397 GHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLPDCIAAGKEAAE 440 (444)
T ss_pred hHHHHHHHHHHhhccccCCeEEeccCCCCCCchHHHHHHHHHHH
Confidence 67778888899999899999999999998777777776665443
No 23
>smart00776 NPCBM This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins.
Probab=42.84 E-value=27 Score=26.82 Aligned_cols=17 Identities=35% Similarity=0.706 Sum_probs=15.1
Q ss_pred CCceEEEEECCEEEEee
Q 041777 99 NSGAFEVFCDGELVFSK 115 (149)
Q Consensus 99 ~~GaFEV~~ng~lV~SK 115 (149)
.+-.|+|+.||+.+|+.
T Consensus 83 gsV~F~V~~Dg~~l~~s 99 (145)
T smart00776 83 GSVVFEVYADGTKLYNS 99 (145)
T ss_pred ccEEEEEEeCCEeEEEc
Confidence 56789999999999975
No 24
>PF04457 DUF504: Protein of unknown function (DUF504); InterPro: IPR007547 This is a family of uncharacterised proteins.
Probab=41.64 E-value=18 Score=23.63 Aligned_cols=12 Identities=42% Similarity=0.827 Sum_probs=10.4
Q ss_pred EE-EECCEEEEee
Q 041777 104 EV-FCDGELVFSK 115 (149)
Q Consensus 104 EV-~~ng~lV~SK 115 (149)
|| .-||++||+|
T Consensus 44 ~ir~~~g~vvw~R 56 (56)
T PF04457_consen 44 EIRKYDGEVVWDR 56 (56)
T ss_pred EEEecCCcEEEcC
Confidence 66 8899999986
No 25
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs. Phylogenetic analysis suggests that ZFERV belongs to a distinct group of retroviruses.
Probab=41.60 E-value=22 Score=27.94 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=14.6
Q ss_pred ceEEEEECCEEEEeecccC
Q 041777 101 GAFEVFCDGELVFSKLMEQ 119 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~~g 119 (149)
-.-++|+||.+|||+-.+.
T Consensus 154 ~~~~~Y~DDili~s~~~~e 172 (210)
T cd03715 154 TILLQYVDDLLLAADSEED 172 (210)
T ss_pred eEEEEECCcEEEecCCHHH
Confidence 3458999999999965543
No 26
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.22 E-value=81 Score=24.23 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=33.7
Q ss_pred ceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcc
Q 041777 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYN 137 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~ 137 (149)
|.||-.-||.+=-.|..=|.-|+..||.+.|..++..
T Consensus 12 Gv~E~~~~~~~~v~rv~FG~EP~d~Ei~~fi~~~~~~ 48 (132)
T PF11208_consen 12 GVFERHEDGKYKVARVTFGAEPKDPEIYEFILKHWYK 48 (132)
T ss_pred EEEEEEECCEEEEEEEeeCCCCCcHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999887644
No 27
>PRK14946 DNA polymerase III subunit beta; Provisional
Probab=36.94 E-value=43 Score=29.21 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=22.5
Q ss_pred CceEEEEECCEEEEeecccCCCCCHHHHH
Q 041777 100 SGAFEVFCDGELVFSKLMEQRFPGEFELR 128 (149)
Q Consensus 100 ~GaFEV~~ng~lV~SKl~~grfP~~~el~ 128 (149)
.+.+-+..++..++|||-+|.||+-+.++
T Consensus 217 ~~~i~f~~~~~~~~srLieG~fPdy~~vi 245 (366)
T PRK14946 217 SSKISYTYDNLTIQSRIFTIEYKDISNVL 245 (366)
T ss_pred CCEEEEEECCEEEEEEEecccCCCHHHhC
Confidence 34555666778899999999999976654
No 28
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=36.79 E-value=31 Score=26.76 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=14.4
Q ss_pred cCCceEEEEECCEEEEe
Q 041777 98 KNSGAFEVFCDGELVFS 114 (149)
Q Consensus 98 ~~~GaFEV~~ng~lV~S 114 (149)
...|.||+||||+.|=.
T Consensus 11 sa~g~Y~l~vNG~~V~~ 27 (172)
T PF08531_consen 11 SALGRYELYVNGERVGD 27 (172)
T ss_dssp EEESEEEEEETTEEEEE
T ss_pred EeCeeEEEEECCEEeeC
Confidence 45699999999999954
No 29
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=36.57 E-value=39 Score=22.55 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=14.3
Q ss_pred hcCCceEEEEECCEEEE
Q 041777 97 LKNSGAFEVFCDGELVF 113 (149)
Q Consensus 97 L~~~GaFEV~~ng~lV~ 113 (149)
+.|...-+|++||++||
T Consensus 10 ~~S~~~i~V~Y~G~pV~ 26 (58)
T TIGR02861 10 AASPEMINVTYKGVPVY 26 (58)
T ss_pred HcCccceEEEECCEEEE
Confidence 34566699999999999
No 30
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=36.39 E-value=44 Score=26.95 Aligned_cols=44 Identities=7% Similarity=0.021 Sum_probs=36.7
Q ss_pred ccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchh
Q 041777 27 ANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPW 71 (149)
Q Consensus 27 ~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~ 71 (149)
+++++..-++..-+..-++-..++...+.|+.++..+|+. -|+.
T Consensus 32 ~~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIs-l~af 75 (201)
T TIGR00427 32 EYYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGIS-IDAF 75 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHH
Confidence 5677777788888888888888889999999999999996 5553
No 31
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=35.53 E-value=38 Score=25.06 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHhhCCCcEEec
Q 041777 5 RGHAMTTKHMLEEAFPGITVTL 26 (149)
Q Consensus 5 r~~f~~~~~~l~~~yP~i~i~g 26 (149)
+.++.++-+.+++++|+..|..
T Consensus 73 ~~~~~~lv~~i~~~~~~~~iil 94 (171)
T cd04502 73 LRDFRELVNRIRAKLPDTPIAI 94 (171)
T ss_pred HHHHHHHHHHHHHHCCCCcEEE
Confidence 3444444444444444443333
No 32
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=35.48 E-value=41 Score=30.78 Aligned_cols=43 Identities=12% Similarity=0.198 Sum_probs=33.9
Q ss_pred cchhhHHHHHHHHHhh---------CCCcEEec------------ccCCCchHHHHHHHHHhHH
Q 041777 3 FCRGHAMTTKHMLEEA---------FPGITVTL------------ANHPRPLLKRLMGIVIPIL 45 (149)
Q Consensus 3 gyr~~f~~~~~~l~~~---------yP~i~i~g------------~nYpp~~~~~~lak~l~~~ 45 (149)
|..+.-+|++++.++- ||-+.|.| .||||+..-.++|++++.+
T Consensus 300 g~eRDieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILalV 363 (554)
T KOG2535|consen 300 GMERDIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILALV 363 (554)
T ss_pred chhhhHHHHHHHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhhC
Confidence 5667778888888653 88888888 4899999999998877654
No 33
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=34.52 E-value=45 Score=26.40 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHhhCCCcEEecc
Q 041777 6 GHAMTTKHMLEEAFPGITVTLA 27 (149)
Q Consensus 6 ~~f~~~~~~l~~~yP~i~i~g~ 27 (149)
.+-++.++.|+++||+++|.|.
T Consensus 59 ~v~~~~~~~l~~~yP~l~i~g~ 80 (177)
T TIGR00696 59 DVLQQLKVKLIKEYPKLKIVGA 80 (177)
T ss_pred HHHHHHHHHHHHHCCCCEEEEE
Confidence 4567789999999999999996
No 34
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=33.63 E-value=48 Score=22.31 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=15.2
Q ss_pred hcCCceEEEEECCEEEE
Q 041777 97 LKNSGAFEVFCDGELVF 113 (149)
Q Consensus 97 L~~~GaFEV~~ng~lV~ 113 (149)
+.|...-+|+.||++||
T Consensus 10 ~~S~~~i~V~Y~G~pV~ 26 (59)
T PRK01625 10 LSSSSRIDVTYEGVPVW 26 (59)
T ss_pred HcCCcceEEEECCEEEE
Confidence 45778899999999999
No 35
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.61 E-value=52 Score=23.84 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=17.9
Q ss_pred chhhHHHHHHHHHhhCCCcEEecccCCCc
Q 041777 4 CRGHAMTTKHMLEEAFPGITVTLANHPRP 32 (149)
Q Consensus 4 yr~~f~~~~~~l~~~yP~i~i~g~nYpp~ 32 (149)
|+.+++++-+.+++++|+..|.-..+||.
T Consensus 62 ~~~~~~~~i~~i~~~~p~~~ii~~~~~p~ 90 (157)
T cd01833 62 APDRLRALIDQMRAANPDVKIIVATLIPT 90 (157)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEeCCCC
Confidence 44556666666667777776665555543
No 36
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=33.17 E-value=59 Score=26.58 Aligned_cols=63 Identities=14% Similarity=0.024 Sum_probs=46.7
Q ss_pred ccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchhHHHhhhcchhhHHHHH-hhHHHHhhhh
Q 041777 27 ANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRHGTIITTW-FLGNYIKSCL 97 (149)
Q Consensus 27 ~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~~~~~~~NK~~~~~~~f-fl~N~i~~~L 97 (149)
++|++..-++..-+..-++-..+++..++|+.++..+|+. -++. |+.-.+..| .--+|+...-
T Consensus 32 ~~~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIs-i~a~-------rIAGGilLf~ia~~ml~~~~ 95 (203)
T COG2095 32 KGLSPEERNRVALRASIIALLILLVFLLLGEGILRFFGIS-IDAF-------RIAGGILLFLIALRMLFGPT 95 (203)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-hhHH-------HHhhhHHHHHHHHHHhcCCc
Confidence 7899999999999999999899999999999999999995 4442 332233333 3456665543
No 37
>PF06236 MelC1: Tyrosinase co-factor MelC1; InterPro: IPR010928 This family consists of several tyrosinase co-factor MELC1 proteins from a number of Streptomyces species. The melanin operon (melC) of Streptomyces antibioticus contains two genes, melC1 and melC2 (apotyrosinase). It is thought that MelC1 forms a transient binary complex with the downstream apotyrosinase MelC2 to facilitate the incorporation of copper ion and the secretion of tyrosinase indicating that MelC1 is a chaperone for the apotyrosinase MelC2 [].; GO: 0005507 copper ion binding, 0042438 melanin biosynthetic process; PDB: 1WX4_B 2ZWD_B 2ZMZ_B 1WX2_B 1WX5_D 3AWX_B 3AWS_B 2ZMY_B 3AX0_B 2ZWG_B ....
Probab=32.93 E-value=78 Score=24.37 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=28.2
Q ss_pred cCCceEEEEECCEEEE-eecccC----------CCCCHHHHHHHHHHHhccccc
Q 041777 98 KNSGAFEVFCDGELVF-SKLMEQ----------RFPGEFELRELVSRKLYNLRN 140 (149)
Q Consensus 98 ~~~GaFEV~~ng~lV~-SKl~~g----------rfP~~~el~~~I~~~l~~~~~ 140 (149)
-.++.++|++||.+++ =|..+| .+|++-|..+.--|.|.-.+.
T Consensus 66 ~~~~~~~V~IDGr~LhvMr~ADGswlS~V~HYe~~pTpl~aARAAVdeL~ga~L 119 (125)
T PF06236_consen 66 AHGGGYEVTIDGRPLHVMRRADGSWLSVVNHYESYPTPLEAARAAVDELGGARL 119 (125)
T ss_dssp ----SEEEEETTEEE-EEE-TTS-EEETTEEEEEESSHHHHHHHHHHHHTT--B
T ss_pred cCCCceEEEECCeEeeeEEcCCCCEEeeeecccCCCCHHHHHHHHHHHhCCCcc
Confidence 3567899999999998 334455 589999999888888775443
No 38
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=32.63 E-value=52 Score=29.06 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=30.3
Q ss_pred cCCceE-----EEEECCEEEEeecc--cCCCCCHHHHHHHHHH
Q 041777 98 KNSGAF-----EVFCDGELVFSKLM--EQRFPGEFELRELVSR 133 (149)
Q Consensus 98 ~~~GaF-----EV~~ng~lV~SKl~--~grfP~~~el~~~I~~ 133 (149)
..+|.| ...+.|...-|||- +|++|+++.+.+.|+.
T Consensus 63 VgGGs~~~~~~~~~i~~~~~~sRl~~Gtg~y~s~~~~~~a~~a 105 (326)
T PRK11840 63 VGGGSDLVADDSWTVAGKTFSSRLLVGTGKYKDFEETAAAVEA 105 (326)
T ss_pred ecCCCCCCCCCCeEECCEEEecceeEecCCCCCHHHHHHHHHH
Confidence 456666 56788999999987 8999999999999986
No 39
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=32.38 E-value=51 Score=22.16 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=15.3
Q ss_pred hcCCceEEEEECCEEEE
Q 041777 97 LKNSGAFEVFCDGELVF 113 (149)
Q Consensus 97 L~~~GaFEV~~ng~lV~ 113 (149)
+.|...-+|+.||.+||
T Consensus 10 ~~Sp~~i~VtY~G~pV~ 26 (59)
T PRK03174 10 AESPDMANVTYNGVPIY 26 (59)
T ss_pred HcCccceEEEECCEEEE
Confidence 46788899999999999
No 40
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=31.95 E-value=54 Score=26.00 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=24.6
Q ss_pred chhhHHHHHHHHHhhCCCcEEecccCCCch
Q 041777 4 CRGHAMTTKHMLEEAFPGITVTLANHPRPL 33 (149)
Q Consensus 4 yr~~f~~~~~~l~~~yP~i~i~g~nYpp~~ 33 (149)
|++++..+-+.|+++.|+.+|.-..||++.
T Consensus 129 ~~~~l~~~l~~i~~~~p~a~I~~~gyp~~~ 158 (259)
T cd01823 129 VGARLKAVLDRIRERAPNARVVVVGYPRLF 158 (259)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEecccccc
Confidence 566777777888889999999999988764
No 41
>PRK11111 hypothetical protein; Provisional
Probab=31.74 E-value=58 Score=26.65 Aligned_cols=44 Identities=7% Similarity=0.029 Sum_probs=35.6
Q ss_pred ccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchh
Q 041777 27 ANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPW 71 (149)
Q Consensus 27 ~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~ 71 (149)
+.+++..-++..-+..-++-..+++..++|+.++..+|+. .|+.
T Consensus 35 ~~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIs-l~af 78 (214)
T PRK11111 35 SHQTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGIS-IDSF 78 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHH
Confidence 4567777777777888888888888999999999999996 5553
No 42
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=31.59 E-value=71 Score=27.52 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=35.7
Q ss_pred HHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcc
Q 041777 91 NYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYN 137 (149)
Q Consensus 91 N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~ 137 (149)
..+...+. .=.| +.|||++|+.=-..+.+|+..+..+..++....
T Consensus 142 ~~l~~~F~-D~rY-ikVdGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~ 186 (345)
T PF14307_consen 142 RYLLPYFK-DPRY-IKVDGKPVFLIYRPGDIPDIKEMIERWREEAKE 186 (345)
T ss_pred HHHHHHhC-CCCc-eeECCEEEEEEECcccccCHHHHHHHHHHHHHH
Confidence 45555453 4455 899999999988899999999999999986644
No 43
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=31.37 E-value=1.1e+02 Score=19.54 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHHHh
Q 041777 120 RFPGEFELRELVSRKL 135 (149)
Q Consensus 120 rfP~~~el~~~I~~~l 135 (149)
+.++.+++.+.|++.+
T Consensus 67 G~~~~~~l~~~l~~~~ 82 (82)
T TIGR00411 67 GAPTKEELVEAIKKRL 82 (82)
T ss_pred cCCCHHHHHHHHHhhC
Confidence 4678889999887653
No 44
>cd01647 RT_LTR RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs are present in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and Caulimoviruses.
Probab=31.23 E-value=27 Score=24.96 Aligned_cols=32 Identities=31% Similarity=0.335 Sum_probs=19.8
Q ss_pred CceEEEEECCEEEEeecccCCCCCHHHHHHHH
Q 041777 100 SGAFEVFCDGELVFSKLMEQRFPGEFELRELV 131 (149)
Q Consensus 100 ~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I 131 (149)
...-++|+||.+|+++-.+-.....+++.+.+
T Consensus 120 ~~~~~~y~DDi~i~~~~~~~~~~~~~~~~~~l 151 (177)
T cd01647 120 GDFVEVYLDDILVYSKTEEEHLEHLREVLERL 151 (177)
T ss_pred ccccEEEecCccccCCCHHHHHHHHHHHHHHH
Confidence 45678999999999975333333333333333
No 45
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=31.18 E-value=35 Score=24.60 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhhCCCcEEecccCCCchHHHHHH
Q 041777 6 GHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMG 39 (149)
Q Consensus 6 ~~f~~~~~~l~~~yP~i~i~g~nYpp~~~~~~la 39 (149)
+-|+++.+.|.+.||+..+ ||-|.|..+.
T Consensus 35 sdF~~L~~~L~~~~p~~~i-----PplP~K~~~~ 63 (112)
T cd06867 35 SEFESLRKNLTRLYPTLII-----PPIPEKHSLK 63 (112)
T ss_pred HHHHHHHHHHHHHCcCCCc-----CCCCCcchhh
Confidence 4699999999999998643 4555565443
No 46
>PRK06673 DNA polymerase III subunit beta; Validated
Probab=30.72 E-value=58 Score=28.34 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=19.8
Q ss_pred EEEEECCEEEEeecccCCCCCHHHH
Q 041777 103 FEVFCDGELVFSKLMEQRFPGEFEL 127 (149)
Q Consensus 103 FEV~~ng~lV~SKl~~grfP~~~el 127 (149)
.-+..++..++|||-+|.||+-+.+
T Consensus 228 i~f~~~~~~~~srLieG~fPdy~~v 252 (376)
T PRK06673 228 IIFTFGTTTLYSRLIEGKYPNISTL 252 (376)
T ss_pred EEEEECCEEEEEEEecccCCChhhc
Confidence 3455678888999999999997644
No 47
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=30.65 E-value=81 Score=27.99 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=27.7
Q ss_pred CCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 99 NSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 99 ~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
.+-+-.|.+||+.|+. +|++.+.+||.+...+.+
T Consensus 417 ~~~V~~v~V~G~~v~~---~g~~~~~~~~~~~~~~~~ 450 (455)
T TIGR02022 417 GAAVRDVWVGGRWVVR---DGRHALREEIGRAFARVL 450 (455)
T ss_pred CCCccEEEECCEEEEE---CCccccHHHHHHHHHHHH
Confidence 3456789999999987 899999999888776644
No 48
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=30.50 E-value=23 Score=25.99 Aligned_cols=31 Identities=6% Similarity=-0.044 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHhhCCCcEEecccCCCchHHHH
Q 041777 6 GHAMTTKHMLEEAFPGITVTLANHPRPLLKRL 37 (149)
Q Consensus 6 ~~f~~~~~~l~~~yP~i~i~g~nYpp~~~~~~ 37 (149)
+.|+.+.+.|+++||++. .+..+||-|.|.+
T Consensus 45 sdF~~L~~~L~~~~~~~~-~~~~~P~lP~K~~ 75 (117)
T cd06881 45 SDFKKLHRELSRLHKQLY-LSGSFPPFPKGKY 75 (117)
T ss_pred HHHHHHHHHHHHHhhhcc-ccCcCCCCCCCcc
Confidence 468889999999999975 3445688888754
No 49
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=30.38 E-value=43 Score=26.48 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=25.9
Q ss_pred hcCCceEEEEE-CCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 97 LKNSGAFEVFC-DGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 97 L~~~GaFEV~~-ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
|...|..-|-= .|.+-=----.||+|+++||.+.|.+++
T Consensus 138 L~~~G~~vi~P~~g~la~g~~g~g~~~~~~~i~~~~~~~~ 177 (177)
T TIGR02113 138 LKKIGYQEIQPKESLLACGDYGRGALADLDDILQTIKEIL 177 (177)
T ss_pred HHHCCCEEECCCcCcccCCCccccCCCCHHHHHHHHHHhC
Confidence 45567655532 2444322233789999999999998875
No 50
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=30.33 E-value=52 Score=22.49 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhh--CCC-cEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhc
Q 041777 7 HAMTTKHMLEEA--FPG-ITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKL 63 (149)
Q Consensus 7 ~f~~~~~~l~~~--yP~-i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~l 63 (149)
+=+++++.+.++ .|. .+=.++.||..||- +++.+.++.|..+|+-+
T Consensus 10 anekfsKNi~~RGnVakt~~~~e~kypvgPwL-----------lglFvFVVcGSa~FqII 58 (65)
T KOG3491|consen 10 ANEKFSKNILKRGNVAKTTTKKEKKYPVGPWL-----------LGLFVFVVCGSALFQII 58 (65)
T ss_pred HHHHHhHHHHhcCCccccccCccccCCcchHH-----------HHHHHHHhhcHHHHHHH
Confidence 334555555444 232 35667899999995 45666777788887643
No 51
>PRK14942 DNA polymerase III subunit beta; Provisional
Probab=30.14 E-value=68 Score=27.98 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=17.6
Q ss_pred EEECCEEEEeecccCCCCCHHHH
Q 041777 105 VFCDGELVFSKLMEQRFPGEFEL 127 (149)
Q Consensus 105 V~~ng~lV~SKl~~grfP~~~el 127 (149)
+..++..+.|||-+|+||+-+.+
T Consensus 232 f~~~~~~~~srLieG~yPdy~~v 254 (373)
T PRK14942 232 VSANNIELLCKLIEGNFPNYEQV 254 (373)
T ss_pred EEECCEEEEEEecccCCCChhhh
Confidence 33456778999999999996544
No 52
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=29.29 E-value=51 Score=23.09 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhCCCcEEec
Q 041777 8 AMTTKHMLEEAFPGITVTL 26 (149)
Q Consensus 8 f~~~~~~l~~~yP~i~i~g 26 (149)
|+-..+.|+++||++.+..
T Consensus 11 fEY~eEvIRNRyPelsi~s 29 (75)
T PF05798_consen 11 FEYTEEVIRNRYPELSITS 29 (75)
T ss_pred hHhHHHHHHccCCceEEEE
Confidence 6777899999999987665
No 53
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=29.15 E-value=1.1e+02 Score=28.06 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=40.1
Q ss_pred HHHHHHHhhCCCcEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCC
Q 041777 10 TTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYM 66 (149)
Q Consensus 10 ~~~~~l~~~yP~i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~ 66 (149)
+.|..+++.||+= .......+++-++..+..+++.+.+.++++++|..
T Consensus 302 ~wK~~lk~~~~~~---------~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~ 349 (491)
T PF03219_consen 302 VWKSQLKQLYPDP---------NDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWR 349 (491)
T ss_pred HHHHHHHHHCCCc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4588889999874 56678889999888888888888899999999874
No 54
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=29.12 E-value=43 Score=24.08 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=16.6
Q ss_pred hcCCceEEEEECCEEEEeec
Q 041777 97 LKNSGAFEVFCDGELVFSKL 116 (149)
Q Consensus 97 L~~~GaFEV~~ng~lV~SKl 116 (149)
+.+.|.+++++||++|.+.-
T Consensus 64 ~~~~~~~~l~Idg~~vid~~ 83 (136)
T smart00758 64 ITSDDGARLWIDGKLVIDNW 83 (136)
T ss_pred EEcCCcEEEEECCcEEEcCC
Confidence 34678899999999999853
No 55
>PRK14944 DNA polymerase III subunit beta; Provisional
Probab=29.07 E-value=71 Score=27.88 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=19.9
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHH
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFEL 127 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el 127 (149)
..-...++..+.|||-+|.||+-+.+
T Consensus 226 ~i~f~~~~~~~~srLieG~fPdy~~v 251 (375)
T PRK14944 226 KIFLKIDNLWFQTSLLEGNYPQIQEI 251 (375)
T ss_pred EEEEEECCEEEEEEeecccCCChhhh
Confidence 34445678888999999999986544
No 56
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=28.17 E-value=59 Score=28.29 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=24.5
Q ss_pred CCcchhhHHHHHHHHHhhCCCcEEeccc
Q 041777 1 MCFCRGHAMTTKHMLEEAFPGITVTLAN 28 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~i~i~g~n 28 (149)
++|.-+++.-+.++|++++|+++|.+..
T Consensus 176 gvGTGGTitGvar~Lk~~~p~i~iv~vd 203 (300)
T COG0031 176 GVGTGGTITGVARYLKERNPNVRIVAVD 203 (300)
T ss_pred eCCcchhHHHHHHHHHhhCCCcEEEEEC
Confidence 5788899999999999999999887743
No 57
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=28.15 E-value=1.2e+02 Score=27.60 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=39.1
Q ss_pred HHHHHHHHhhCCCcEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCC
Q 041777 9 MTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYM 66 (149)
Q Consensus 9 ~~~~~~l~~~yP~i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~ 66 (149)
-+.|+.+++.||+ |....+..+++-.+..+..+++.+++.++++.+|..
T Consensus 285 ~~~k~~v~~~~p~---------~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~ 333 (472)
T TIGR00769 285 VTWKSKLKAQYPS---------PNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWL 333 (472)
T ss_pred HHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3458888999997 455678888888888888877777779999999884
No 58
>PF07619 DUF1581: Protein of unknown function (DUF1581); InterPro: IPR022660 Several Rhodopirellula baltica proteins share this domain. They also match PF07622 from PFAM
Probab=28.06 E-value=85 Score=22.64 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=19.9
Q ss_pred cCCceEEEEECCEEEEee-cccCCCC
Q 041777 98 KNSGAFEVFCDGELVFSK-LMEQRFP 122 (149)
Q Consensus 98 ~~~GaFEV~~ng~lV~SK-l~~grfP 122 (149)
++.|.=+..+||.+|+-+ +.++.+|
T Consensus 4 ird~~~~~~~NGr~i~~~~~~~~a~P 29 (84)
T PF07619_consen 4 IRDGEQTHFINGRPIHRESLATSAAP 29 (84)
T ss_pred EeCCeEEEEECCEEEEecccccccCC
Confidence 467888999999999987 5566665
No 59
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=27.75 E-value=73 Score=23.44 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=22.6
Q ss_pred chhhHHHHHHHHHhhCCCcEEecccCCCc
Q 041777 4 CRGHAMTTKHMLEEAFPGITVTLANHPRP 32 (149)
Q Consensus 4 yr~~f~~~~~~l~~~yP~i~i~g~nYpp~ 32 (149)
|+.+++++-+.+.+++|+.+|.-...||.
T Consensus 73 ~~~~~~~l~~~~~~~~p~~~vi~~~~~p~ 101 (174)
T cd01841 73 FIKWYRDIIEQIREEFPNTKIYLLSVLPV 101 (174)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeeCCc
Confidence 67788888888889999988776665553
No 60
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=26.36 E-value=74 Score=23.63 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=30.7
Q ss_pred CceEEEEECCE----------EEEeecccC-----------CCCCHHHHHHHHHHHhccccccCCcCCC
Q 041777 100 SGAFEVFCDGE----------LVFSKLMEQ-----------RFPGEFELRELVSRKLYNLRNSEGFSGG 147 (149)
Q Consensus 100 ~GaFEV~~ng~----------lV~SKl~~g-----------rfP~~~el~~~I~~~l~~~~~~~~~~~~ 147 (149)
.=.|||.+||. ++|....+| ++++..++.+...-...... .++++.|
T Consensus 17 ~KtiEiRlnD~kr~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~sF~~ll~~e~~~~~~~~-~~s~ee~ 84 (109)
T cd06555 17 KKTIEIRLNDEKRQQIKVGDKILFNDLDTGQQLLVKVVDIRKYDSFRELLEEEGLEKVGPG-VDSIEEG 84 (109)
T ss_pred CCEEEEEecccchhcCCCCCEEEEEEcCCCcEEEEEEEEEEecCCHHHHHHhcCHhhcCCC-CCcHHHH
Confidence 34688887665 788776554 69999999988864433222 4555443
No 61
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=26.24 E-value=58 Score=23.55 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=17.4
Q ss_pred CCceEEEEECCEEEEeecccCCC
Q 041777 99 NSGAFEVFCDGELVFSKLMEQRF 121 (149)
Q Consensus 99 ~~GaFEV~~ng~lV~SKl~~grf 121 (149)
+.-++.|++||+.|-+ +..|+|
T Consensus 39 ~~~~~~v~vdg~~ig~-l~~g~y 60 (117)
T PF11008_consen 39 SAVKPDVYVDGELIGE-LKNGGY 60 (117)
T ss_pred ccccceEEECCEEEEE-eCCCeE
Confidence 4667999999999988 666644
No 62
>smart00030 CLb CLUSTERIN Beta chain.
Probab=26.22 E-value=63 Score=26.87 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=31.8
Q ss_pred hhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCC
Q 041777 88 FLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPG 123 (149)
Q Consensus 88 fl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~ 123 (149)
++||.+|..|..+--|-+.+||+.|=|=++.++-++
T Consensus 113 lVg~qlEefln~sspf~~wingd~idsL~e~~~~q~ 148 (206)
T smart00030 113 LVGRQLEEFLNQSSPFYFWMNGDRIDSLLENDRQQS 148 (206)
T ss_pred hHHHHHHHHHhcCCCceeecccchhhhHHhhhhhhh
Confidence 489999999999999999999999988888877444
No 63
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs). RTs catalyze the conversion of single-stranded RNA into double-stranded viral DNA for integration into host chromosomes. Proteins in this subfamily contain long terminal repeats (LTRs) and are multifunctional enzymes with RNA-directed DNA polymerase, DNA directed DNA polymerase, and ribonuclease hybrid (RNase H) activities. The viral RNA genome enters the cytoplasm as part of a nucleoprotein complex, and the process of reverse transcription generates in the cytoplasm forming a linear DNA duplex via an intricate series of steps. This duplex DNA is colinear with its RNA template, but contains terminal duplications known as LTRs that are not present in viral RNA. It has been proposed that two specialized template switches, known as strand-transfer reactions or "jumps", are required to generate the LTRs.
Probab=25.77 E-value=74 Score=25.20 Aligned_cols=32 Identities=28% Similarity=0.150 Sum_probs=22.0
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHH
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSR 133 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~ 133 (149)
...+|+||.+|+|+-.+...-..+++++.+++
T Consensus 159 ~~~~Y~DDili~s~~~~~~~~~l~~v~~~l~~ 190 (213)
T cd01645 159 VIYHYMDDILIASDLEGQLREIYEELRQTLLR 190 (213)
T ss_pred EEEEEcCCEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 46899999999997765544444455555544
No 64
>PF14143 YrhC: YrhC-like protein
Probab=25.12 E-value=2.3e+02 Score=19.68 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=38.8
Q ss_pred HHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchhHHHhhhcchhhHHHHHhhHHHHh
Q 041777 36 RLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIK 94 (149)
Q Consensus 36 ~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~~~~~~~NK~~~~~~~ffl~N~i~ 94 (149)
++-+|+..+-+++.+.+.++ .|-++|.--|..-.+-.+.+=+....++|+.+.+..
T Consensus 2 ~l~~Ki~DyKrf~~vLLAvs---~FlYiG~viP~~~~~~~~~~~m~~~~~~~l~~a~~f 57 (72)
T PF14143_consen 2 ELKEKIEDYKRFAFVLLAVS---TFLYIGTVIPIGAKETAQKYIMMGAICIFLAGAFLF 57 (72)
T ss_pred cHHHHHHHHHHHHHHHHHHH---HHHHHHhhCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888888888887774 478888864546555566666666677777666553
No 65
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=24.67 E-value=75 Score=21.42 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=10.8
Q ss_pred HHHHHHHHhhCCCcEE
Q 041777 9 MTTKHMLEEAFPGITV 24 (149)
Q Consensus 9 ~~~~~~l~~~yP~i~i 24 (149)
.|+.+-|+.+||+..|
T Consensus 11 ~EL~kRl~~~yPd~~v 26 (65)
T PF06183_consen 11 SELTKRLHRQYPDAEV 26 (65)
T ss_dssp HHHHHHHHHH-SS-EE
T ss_pred HHHHHHHHHHCCCceE
Confidence 4678888999998643
No 66
>PRK09381 trxA thioredoxin; Provisional
Probab=24.50 E-value=2.2e+02 Score=19.36 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=24.2
Q ss_pred CceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 100 SGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 100 ~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
.=++.++-||+.++.. .| ..+.++|.+.|+.++
T Consensus 76 ~Pt~~~~~~G~~~~~~--~G-~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 76 IPTLLLFKNGEVAATK--VG-ALSKGQLKEFLDANL 108 (109)
T ss_pred CCEEEEEeCCeEEEEe--cC-CCCHHHHHHHHHHhc
Confidence 3458888899887753 33 356889999998876
No 67
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=24.49 E-value=3e+02 Score=20.46 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=25.8
Q ss_pred EEEEECCEEEEeecc-c-----CCCCCHHHHHHHHHHHhccccc
Q 041777 103 FEVFCDGELVFSKLM-E-----QRFPGEFELRELVSRKLYNLRN 140 (149)
Q Consensus 103 FEV~~ng~lV~SKl~-~-----grfP~~~el~~~I~~~l~~~~~ 140 (149)
|-|-=||+++|.-.. + ..-|+.+++.+.|++.+...+.
T Consensus 114 ~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 157 (171)
T cd02969 114 FLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPV 157 (171)
T ss_pred EEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence 333346888876422 1 2468999999999998876554
No 68
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=24.29 E-value=41 Score=22.81 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHhh--CCC-cEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhc
Q 041777 5 RGHAMTTKHMLEEA--FPG-ITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKL 63 (149)
Q Consensus 5 r~~f~~~~~~l~~~--yP~-i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~l 63 (149)
|.+=+.+.+.+..+ .|. ..=....||.+||- +++++.++.|..+|+-+
T Consensus 8 r~an~kf~kni~krG~v~~~~k~k~~k~pVgp~~-----------L~l~iFVV~Gs~ifqii 58 (63)
T PF06624_consen 8 RRANEKFSKNITKRGKVPKSLKKKEKKYPVGPWL-----------LGLFIFVVCGSAIFQII 58 (63)
T ss_pred HHHHHHHHhhHHhcCCCccccccccccCCcCHHH-----------HhhhheeeEcHHHHHHH
Confidence 33444455555554 443 22335789999985 45667788898888765
No 69
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=24.23 E-value=77 Score=24.57 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=13.4
Q ss_pred ceEEEEECCEEEEeecc
Q 041777 101 GAFEVFCDGELVFSKLM 117 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~ 117 (149)
-.|.|++||++|.+.+.
T Consensus 104 RvFdV~v~g~~vl~~~D 120 (174)
T PF11721_consen 104 RVFDVYVNGETVLKNFD 120 (174)
T ss_dssp S-EEEEETTEEEEEEE-
T ss_pred eEEEEEecceEEEeccC
Confidence 38999999999998764
No 70
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Probab=23.95 E-value=79 Score=27.86 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=34.0
Q ss_pred HHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHH-HHHHHHhc
Q 041777 90 GNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELR-ELVSRKLY 136 (149)
Q Consensus 90 ~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~-~~I~~~l~ 136 (149)
..|++..+.+=|-+-+.+||..-|+ ||+.++|. +.++.+|.
T Consensus 136 T~Mve~fc~~fG~~i~~~dg~~~h~------FPsl~~L~g~~~Ea~LR 177 (323)
T KOG2875|consen 136 TGMVERFCQAFGPRIIQLDGVDYHG------FPSLQALAGPEVEAELR 177 (323)
T ss_pred HHHHHHHHHhhCcceEeecCccccc------CccHHHhcCcHhHHHHH
Confidence 3588888888999999999998776 99999998 56666654
No 71
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=23.47 E-value=36 Score=24.61 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHhhCCCcEEecccCCCchHHHH
Q 041777 6 GHAMTTKHMLEEAFPGITVTLANHPRPLLKRL 37 (149)
Q Consensus 6 ~~f~~~~~~l~~~yP~i~i~g~nYpp~~~~~~ 37 (149)
+-|+.+.+.|+++||+.. -||.|-|..
T Consensus 44 sdF~~L~~~L~~~~~~~~-----iP~lP~K~~ 70 (112)
T cd06861 44 RDFRWLYRQLQNNHPGVI-----VPPPPEKQS 70 (112)
T ss_pred HHHHHHHHHHHHHCCCCc-----cCCCCCccc
Confidence 468899999999999863 355565654
No 72
>PF08305 NPCBM: NPCBM/NEW2 domain; InterPro: IPR013222 This novel putative carbohydrate binding module (NPCBM) domain is found at the N terminus of glycosyl hydrolase family 98 proteins.; PDB: 2YGM_A 2YGL_A 2VMG_A 2VMH_A 2VMI_A 2VNR_A 2VNG_B 2VNO_B.
Probab=23.18 E-value=78 Score=23.66 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.8
Q ss_pred CCceEEEEECCEEEEeec
Q 041777 99 NSGAFEVFCDGELVFSKL 116 (149)
Q Consensus 99 ~~GaFEV~~ng~lV~SKl 116 (149)
.+..|+|+.||+++|+.-
T Consensus 79 ~~v~f~V~~Dg~~l~~s~ 96 (142)
T PF08305_consen 79 GSVKFKVYGDGKELYSSG 96 (142)
T ss_dssp CEEEEEEEETTEEEEETT
T ss_pred ccEEEEEEECCceeeeee
Confidence 678899999999999754
No 73
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=22.98 E-value=98 Score=23.46 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=20.2
Q ss_pred chhhHHHHHHHHHhhCCCcEEecccC
Q 041777 4 CRGHAMTTKHMLEEAFPGITVTLANH 29 (149)
Q Consensus 4 yr~~f~~~~~~l~~~yP~i~i~g~nY 29 (149)
|++++.++-+.++++.|+.+|.-..+
T Consensus 104 ~~~~l~~~i~~ir~~~p~~~Ivv~~~ 129 (204)
T cd04506 104 YQNNLKKIFKEIRKLNPDAPIFLVGL 129 (204)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 67888888889999999987654433
No 74
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=22.91 E-value=34 Score=25.49 Aligned_cols=32 Identities=6% Similarity=-0.068 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHhhCCCcEEecccCCCchHHHH
Q 041777 6 GHAMTTKHMLEEAFPGITVTLANHPRPLLKRL 37 (149)
Q Consensus 6 ~~f~~~~~~l~~~yP~i~i~g~nYpp~~~~~~ 37 (149)
.-|+.+.+.|.++||++.-.|.--||+|-+..
T Consensus 45 SDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~ 76 (118)
T cd07287 45 SDFKKLHKDLWQIHKNLCRQSELFPPFAKAKV 76 (118)
T ss_pred hHHHHHHHHHHHhccccccCCcccCCCCCcee
Confidence 35899999999999986545555566665443
No 75
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=22.77 E-value=54 Score=23.35 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHhhCCCcEEecccCCCchHHHH
Q 041777 6 GHAMTTKHMLEEAFPGITVTLANHPRPLLKRL 37 (149)
Q Consensus 6 ~~f~~~~~~l~~~yP~i~i~g~nYpp~~~~~~ 37 (149)
+.|..+.+.|.++||+.. -||.|.|..
T Consensus 44 seF~~L~~~L~~~~~~~~-----~P~lP~k~~ 70 (114)
T cd06859 44 SDFLWLYERLVEKYPGRI-----VPPPPEKQA 70 (114)
T ss_pred HHHHHHHHHHHHHCCCCE-----eCCCCCCcc
Confidence 358888999999999653 366665643
No 76
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.69 E-value=95 Score=22.94 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHhhCCCcEEecc
Q 041777 5 RGHAMTTKHMLEEAFPGITVTLA 27 (149)
Q Consensus 5 r~~f~~~~~~l~~~yP~i~i~g~ 27 (149)
++.|+.+.+.++++||+..|.-+
T Consensus 16 ~~~~~~i~~~l~~~~p~~~V~~a 38 (127)
T cd03412 16 EKTIDAIEDKVRAAFPDYEVRWA 38 (127)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEE
Confidence 46899999999999999887654
No 77
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.45 E-value=2e+02 Score=21.44 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=16.5
Q ss_pred chhhHHHHHHHHHhhCCCcEEeccc
Q 041777 4 CRGHAMTTKHMLEEAFPGITVTLAN 28 (149)
Q Consensus 4 yr~~f~~~~~~l~~~yP~i~i~g~n 28 (149)
|++++.++-+.|++++|+..|....
T Consensus 76 ~~~~~~~~i~~i~~~~p~~~iil~~ 100 (177)
T cd01844 76 VRERLGPLVKGLRETHPDTPILLVS 100 (177)
T ss_pred HHHHHHHHHHHHHHHCcCCCEEEEe
Confidence 5667777777777777776555443
No 78
>PHA02141 hypothetical protein
Probab=22.41 E-value=96 Score=22.75 Aligned_cols=26 Identities=35% Similarity=0.236 Sum_probs=18.0
Q ss_pred chhHHHhhhcchhhHHHHHhhHHHHhh
Q 041777 69 PPWYYSLRANRHGTIITTWFLGNYIKS 95 (149)
Q Consensus 69 P~~~~~~~~NK~~~~~~~ffl~N~i~~ 95 (149)
.+...|+++|-.|.++++ +++=|+.+
T Consensus 6 ss~~swl~~n~ly~ii~~-l~~~m~kn 31 (105)
T PHA02141 6 SSTISWLRNNVLYMIIIG-LLGWMIKN 31 (105)
T ss_pred HHHHHHHHhchHHHHHHH-HHHHHHhc
Confidence 345678999999987776 55555543
No 79
>PF04385 FAINT: Domain of unknown function, DUF529; InterPro: IPR007480 This entry represents a repeated region found in several Theileria parva proteins.The repeat is normally about 70 residues long and contains a conserved aromatic residue in the middle.
Probab=22.01 E-value=1.1e+02 Score=18.67 Aligned_cols=19 Identities=5% Similarity=0.132 Sum_probs=14.6
Q ss_pred eEEEEECCEEEEeecccCC
Q 041777 102 AFEVFCDGELVFSKLMEQR 120 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~gr 120 (149)
.-+|..+|+.||.+...-.
T Consensus 35 ~~~V~~~~~~iW~~~~~~~ 53 (78)
T PF04385_consen 35 CTKVKYGDKTIWKSKSDEE 53 (78)
T ss_pred EEEEEECCEEEEecCCCCC
Confidence 4578899999998766543
No 80
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=21.92 E-value=1.5e+02 Score=26.09 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=25.9
Q ss_pred CCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHH
Q 041777 99 NSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRK 134 (149)
Q Consensus 99 ~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~ 134 (149)
..-+-.|++||+.|+. +|+..+.++|.+..++.
T Consensus 417 ~~~V~~v~V~G~~v~~---~g~~~d~~~i~~~~~~~ 449 (456)
T PRK09229 417 DAAVRDVWVAGRWVVR---DGRHRLREAIAAAFRAA 449 (456)
T ss_pred CCCeeEEEECCEEEEE---CCccCCHHHHHHHHHHH
Confidence 3467789999999987 67888888887766653
No 81
>cd03714 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons. Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase.
Probab=21.81 E-value=2.9e+02 Score=19.39 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=13.5
Q ss_pred ceEEEEECCEEEEeec
Q 041777 101 GAFEVFCDGELVFSKL 116 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl 116 (149)
-..++|+||.+|+|+-
T Consensus 61 ~~v~~Y~DDili~~~~ 76 (119)
T cd03714 61 VRIFSYLDDLLIIASS 76 (119)
T ss_pred eEEEEEecCeEEEeCc
Confidence 3578999999999974
No 82
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.57 E-value=2.2e+02 Score=20.75 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=14.8
Q ss_pred chhhHHHHHHHHHhhCCCcEEecccCCCc
Q 041777 4 CRGHAMTTKHMLEEAFPGITVTLANHPRP 32 (149)
Q Consensus 4 yr~~f~~~~~~l~~~yP~i~i~g~nYpp~ 32 (149)
|+++++++-+.++++.|+..|.-...||.
T Consensus 70 ~~~~l~~li~~~~~~~~~~~vi~~~~~p~ 98 (169)
T cd01828 70 IVANYRTILEKLRKHFPNIKIVVQSILPV 98 (169)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEecCCc
Confidence 34455555555555555555554444333
No 83
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=21.26 E-value=99 Score=22.06 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=16.2
Q ss_pred cCCceEEEEECCEEEEeec
Q 041777 98 KNSGAFEVFCDGELVFSKL 116 (149)
Q Consensus 98 ~~~GaFEV~~ng~lV~SKl 116 (149)
.+.|..++++||++|.+.-
T Consensus 67 ~~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 67 TSDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp EESSEEEEEETTEEEEECS
T ss_pred EecccEEEEECCEEEEcCC
Confidence 4688899999999998755
No 84
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.00 E-value=1.2e+02 Score=22.56 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=21.7
Q ss_pred chhhHHHHHHHHHhhCCCcEEecccCCC
Q 041777 4 CRGHAMTTKHMLEEAFPGITVTLANHPR 31 (149)
Q Consensus 4 yr~~f~~~~~~l~~~yP~i~i~g~nYpp 31 (149)
|+.+++++-+.+++++|+.+|.-...||
T Consensus 89 ~~~~l~~li~~i~~~~~~~~iiv~~~p~ 116 (191)
T cd01836 89 WRKQLAELVDALRAKFPGARVVVTAVPP 116 (191)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence 6778888888888889998777665544
No 85
>CHL00173 cpeA phycoerythrin alpha subunit; Provisional
Probab=20.86 E-value=2.3e+02 Score=22.48 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=36.1
Q ss_pred HHHHHhhCCCcEEec-ccCCCchHHHHHHHHHhHHHHHHHHHHhhCch------------hhhhcCCCCCchhHH
Q 041777 12 KHMLEEAFPGITVTL-ANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQ------------IFQKLGYMKPPPWYY 73 (149)
Q Consensus 12 ~~~l~~~yP~i~i~g-~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~------------if~~lg~~~~P~~~~ 73 (149)
++.+-++||++.=-| ..||.-.....+=-+--++.++.=+++..|.. .+..||. |+.|+.
T Consensus 56 ~~~l~~~~P~l~~pGG~~y~~~r~aaC~RD~~~yLR~itY~l~aG~~~~lde~gl~Glre~Y~sLgV--P~~~~v 128 (164)
T CHL00173 56 GDACFAKYSYLKNPGEAGDSQEKVNKCYRDVDHYMRLVNYCLVVGGTGPVDEWGIAGAREVYRTLNL--PTSAYV 128 (164)
T ss_pred HHHHHHHCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHhHHHHHHHHhCC--CHHHHH
Confidence 556778899986554 66776666655555555555555554433433 4556777 455553
No 86
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=20.55 E-value=47 Score=27.37 Aligned_cols=14 Identities=21% Similarity=0.183 Sum_probs=12.0
Q ss_pred CCcchhhHHHHHHH
Q 041777 1 MCFCRGHAMTTKHM 14 (149)
Q Consensus 1 sCgyr~~f~~~~~~ 14 (149)
.||||.+|+++++.
T Consensus 110 aCgFRDnY~k~kka 123 (211)
T KOG0855|consen 110 ACGFRDNYEKFKKA 123 (211)
T ss_pred cccccccHHHHhhc
Confidence 39999999999873
No 87
>TIGR01338 phycocy_alpha phycocyanin, alpha subunit. This model excludes the closely related phycoerythrocyanin alpha subunit.
Probab=20.22 E-value=2.9e+02 Score=21.88 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=38.0
Q ss_pred HHHHHhhCCCcEE-ecccCCCch--HHHHHHHHHhHHHHHHHHHHhhCch------------hhhhcCCCCCchhHH
Q 041777 12 KHMLEEAFPGITV-TLANHPRPL--LKRLMGIVIPILQGGVIVIIMGGEQ------------IFQKLGYMKPPPWYY 73 (149)
Q Consensus 12 ~~~l~~~yP~i~i-~g~nYpp~~--~~~~lak~l~~~q~~~i~~i~~G~~------------if~~lg~~~~P~~~~ 73 (149)
.+.+-++||++.= -|.+|+... ...++--+--++.++.=+++..|.. .+..||. |++|+.
T Consensus 55 a~~lf~~~P~~~~pgGn~y~~~~~~~aaClRD~~~yLR~itY~lvAGd~~~Lde~~l~GlrE~Y~sLgv--p~~~~v 129 (161)
T TIGR01338 55 AQAVYSKFPYTTQMNGPNYASTATGKAKCARDIGYYLRMVTYCLVVGGTGPLDEYLIAGLEEINRSFDL--SPSWYV 129 (161)
T ss_pred HHHHHHhCcCcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHhhHHHHHHHcCC--CcHHHH
Confidence 4556788999854 557888776 5666655555666555554433333 4566888 577764
No 88
>PF15059 Speriolin_C: Speriolin C-terminus
Probab=20.19 E-value=66 Score=25.41 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=31.2
Q ss_pred CCcchhhH-HHHHHHHHhhC------CCc-EEecccCCCchHHHHHHHHHhH
Q 041777 1 MCFCRGHA-MTTKHMLEEAF------PGI-TVTLANHPRPLLKRLMGIVIPI 44 (149)
Q Consensus 1 sCgyr~~f-~~~~~~l~~~y------P~i-~i~g~nYpp~~~~~~lak~l~~ 44 (149)
+|||.+.+ =.+.++|-++| |+. ..++..| |...++.+...++-
T Consensus 69 ~lGY~~~~HP~lsE~lVN~yGILr~rp~l~a~~~~~y-p~~L~~~v~~~vPp 119 (146)
T PF15059_consen 69 KLGYNRRVHPGLSEFLVNTYGILRERPELAASEGGSY-PDFLRRVVIETVPP 119 (146)
T ss_pred HcCCCCccCchHHHHHHHHccccccCcccccCcCcCC-HHHHHHHHHHhcCh
Confidence 47887776 34567777777 666 5888999 88888877766654
No 89
>KOG4749 consensus Inositol polyphosphate kinase [Signal transduction mechanisms]
Probab=20.12 E-value=1.3e+02 Score=26.99 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=23.7
Q ss_pred CceEEEEECCEEEEeecccCCCCCHHHHHHHHH
Q 041777 100 SGAFEVFCDGELVFSKLMEQRFPGEFELRELVS 132 (149)
Q Consensus 100 ~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~ 132 (149)
-.-|.|++||.+||+-+..|--=+..||.-...
T Consensus 203 qnnlrvF~nG~lv~gg~~~g~~kt~s~i~~~~~ 235 (375)
T KOG4749|consen 203 QNNLRVFLNGSLVFGGLGGGICKTTSEIELAFE 235 (375)
T ss_pred ccceeEEeccceeecccCCCcccchhhhhHHHH
Confidence 467999999999999888775444444444433
Done!