Query 041777
Match_columns 149
No_of_seqs 161 out of 313
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 18:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2npb_A Selenoprotein W; struct 99.8 1.1E-19 3.9E-24 131.2 7.2 75 1-142 12-87 (96)
2 2oka_A Hypothetical protein; P 99.7 1.6E-17 5.5E-22 121.7 8.0 44 98-141 45-88 (104)
3 2p0g_A Selenoprotein W-related 99.7 2.3E-17 7.9E-22 121.0 7.2 44 98-141 43-86 (105)
4 2fa8_A Hypothetical protein AT 99.7 2.1E-17 7.2E-22 121.2 6.9 44 98-141 47-90 (105)
5 2ljk_A Protein C17ORF37; MIEN1 99.5 9.2E-16 3.1E-20 114.4 1.5 70 1-139 34-103 (117)
6 2ojl_A Hypothetical protein; B 99.4 6.2E-14 2.1E-18 103.3 4.4 44 98-141 48-91 (108)
7 3dex_A SAV_2001; alpha-beta pr 99.3 4.2E-13 1.4E-17 98.7 3.9 42 98-140 52-93 (107)
8 3kgk_A Arsenical resistance op 77.0 2.4 8.3E-05 30.7 3.7 26 104-133 75-100 (110)
9 3ktb_A Arsenical resistance op 76.3 2.7 9.1E-05 30.3 3.8 25 104-132 78-102 (106)
10 3hz8_A Thiol:disulfide interch 67.8 34 0.0012 25.2 9.0 128 1-139 35-186 (193)
11 4euy_A Uncharacterized protein 67.4 22 0.00074 22.8 7.6 31 102-135 74-104 (105)
12 3mx7_A FAS apoptotic inhibitor 65.3 5.1 0.00017 28.1 3.1 18 98-115 25-42 (90)
13 3h93_A Thiol:disulfide interch 63.8 38 0.0013 24.3 7.9 130 1-138 36-186 (192)
14 3bci_A Disulfide bond protein 61.4 42 0.0014 24.0 11.5 32 1-32 22-57 (186)
15 1ilo_A Conserved hypothetical 56.6 9.7 0.00033 22.9 3.0 20 108-131 57-76 (77)
16 3hd5_A Thiol:disulfide interch 52.6 61 0.0021 23.2 10.7 131 1-138 36-186 (195)
17 3m9j_A Thioredoxin; oxidoreduc 52.3 40 0.0014 21.0 8.8 31 101-135 75-105 (105)
18 3ha9_A Uncharacterized thiored 52.0 54 0.0019 22.4 8.0 31 1-31 48-78 (165)
19 3gl3_A Putative thiol:disulfid 51.8 18 0.00061 24.4 4.0 40 103-143 110-149 (152)
20 2av4_A Thioredoxin-like protei 50.9 29 0.00098 26.4 5.4 43 99-142 95-145 (160)
21 2j96_A Phycoerythrocyanin alph 46.3 37 0.0013 25.5 5.3 54 9-62 53-109 (162)
22 1ti3_A Thioredoxin H, PTTRXH1; 44.3 58 0.002 20.5 7.8 32 100-135 80-111 (113)
23 3l9v_A Putative thiol-disulfid 44.0 90 0.0031 22.7 9.7 132 1-139 25-186 (189)
24 2l57_A Uncharacterized protein 43.9 66 0.0022 21.0 8.0 38 102-142 85-123 (126)
25 2zzj_A Glucuronan lyase A; bet 43.7 16 0.00054 29.7 3.0 21 99-119 164-184 (238)
26 3qfa_C Thioredoxin; protein-pr 43.5 66 0.0023 21.0 8.1 30 102-135 87-116 (116)
27 3dex_A SAV_2001; alpha-beta pr 42.1 21 0.00073 25.6 3.2 26 1-26 22-49 (107)
28 1qgv_A Spliceosomal protein U5 42.1 57 0.0019 22.6 5.6 41 102-142 80-127 (142)
29 3f4s_A Alpha-DSBA1, putative u 41.6 1.2E+02 0.0039 23.2 9.6 134 1-138 50-213 (226)
30 2e0q_A Thioredoxin; electron t 41.3 60 0.002 19.8 9.3 33 101-136 71-103 (104)
31 3gyk_A 27KDA outer membrane pr 40.5 91 0.0031 21.7 12.8 126 1-136 33-173 (175)
32 2voc_A Thioredoxin; electron t 39.9 50 0.0017 21.3 4.7 37 102-141 74-110 (112)
33 2b5x_A YKUV protein, TRXY; thi 39.1 40 0.0014 22.2 4.2 28 107-137 119-146 (148)
34 4f0l_A Amidohydrolase; ssgcid, 38.9 26 0.0009 28.7 3.7 32 101-135 422-453 (458)
35 2vmh_A GH95CBM51, fibronectin 38.3 21 0.00071 26.5 2.8 16 99-114 89-104 (151)
36 3mdu_A N-formimino-L-glutamate 38.0 43 0.0015 27.6 5.0 34 99-135 415-448 (453)
37 1xfl_A Thioredoxin H1; AT3G510 35.2 98 0.0033 20.5 9.0 30 102-135 94-123 (124)
38 2hls_A Protein disulfide oxido 34.9 61 0.0021 24.7 5.1 37 101-142 196-232 (243)
39 2vng_A CPE0329; family 51 carb 34.8 25 0.00085 27.2 2.8 15 102-116 109-123 (180)
40 3d1g_A DNA polymerase III subu 34.2 51 0.0018 27.2 4.8 25 102-126 222-246 (366)
41 1dby_A Chloroplast thioredoxin 32.6 91 0.0031 19.4 8.0 31 102-135 76-106 (107)
42 3gmf_A Protein-disulfide isome 32.3 1.6E+02 0.0054 22.1 13.0 36 1-36 26-65 (205)
43 3tco_A Thioredoxin (TRXA-1); d 31.8 79 0.0027 19.6 4.5 33 100-135 76-108 (109)
44 1syr_A Thioredoxin; SGPP, stru 31.7 1E+02 0.0035 19.7 8.5 30 102-135 82-111 (112)
45 3ug3_A Alpha-L-arabinofuranosi 31.6 53 0.0018 29.0 4.7 24 4-27 207-230 (504)
46 1fo5_A Thioredoxin; disulfide 31.1 50 0.0017 19.7 3.3 29 1-29 13-42 (85)
47 2trx_A Thioredoxin; electron t 28.9 1E+02 0.0035 19.2 4.7 32 101-135 76-107 (108)
48 1kn1_A Allophycocyanin; helix- 28.9 1.8E+02 0.0061 21.6 6.9 53 9-61 51-104 (160)
49 3gnj_A Thioredoxin domain prot 28.5 99 0.0034 19.3 4.6 34 100-136 77-110 (111)
50 3die_A Thioredoxin, TRX; elect 28.2 81 0.0028 19.5 4.1 31 102-135 76-106 (106)
51 3ia1_A THIO-disulfide isomeras 28.1 23 0.00077 24.0 1.4 35 103-140 114-148 (154)
52 2v73_A CBM40, putative EXO-alp 28.1 56 0.0019 25.5 3.8 18 100-117 117-134 (191)
53 1vpk_A DNA polymerase III, bet 27.9 43 0.0015 27.6 3.3 27 100-126 231-257 (378)
54 1vgj_A Hypothetical protein PH 27.4 69 0.0023 22.9 4.0 44 91-136 59-112 (184)
55 3zzx_A Thioredoxin; oxidoreduc 26.5 1.2E+02 0.0042 19.8 5.0 29 102-134 76-104 (105)
56 1fb6_A Thioredoxin M; electron 26.1 92 0.0032 19.1 4.1 31 102-135 75-105 (105)
57 2i4a_A Thioredoxin; acidophIle 26.1 1E+02 0.0035 19.0 4.3 31 101-134 76-106 (107)
58 3fsi_A RT, reverse transcripta 26.0 12 0.00039 29.2 -0.5 32 102-133 195-226 (255)
59 3gn3_A Putative protein-disulf 26.0 66 0.0022 23.7 3.8 42 1-42 25-70 (182)
60 3kcm_A Thioredoxin family prot 25.7 95 0.0033 20.7 4.3 38 102-140 110-147 (154)
61 1xg0_C B-phycoerythrin beta ch 25.0 70 0.0024 24.4 3.8 55 8-62 52-107 (177)
62 4h08_A Putative hydrolase; GDS 24.8 58 0.002 23.1 3.2 37 10-46 65-106 (200)
63 1t00_A Thioredoxin, TRX; redox 24.8 1E+02 0.0035 19.4 4.2 32 102-136 80-111 (112)
64 4axd_A Inositol-pentakisphosph 24.8 85 0.0029 27.6 4.7 37 99-135 241-277 (456)
65 3p2a_A Thioredoxin 2, putative 24.6 1.4E+02 0.0049 20.0 5.1 36 101-139 111-146 (148)
66 2k8e_A UPF0339 protein YEGP; p 24.4 1.1E+02 0.0036 22.3 4.5 47 85-135 4-63 (130)
67 2avt_A DNA polymerase III beta 24.3 49 0.0017 27.5 3.0 26 102-127 230-255 (378)
68 2vlu_A Thioredoxin, thioredoxi 24.2 1.5E+02 0.005 19.0 9.1 31 102-136 90-120 (122)
69 2yzu_A Thioredoxin; redox prot 24.2 1.3E+02 0.0044 18.4 8.5 33 101-136 74-106 (109)
70 3t0p_A DNA polymerase III, bet 24.1 51 0.0018 27.4 3.1 24 102-125 223-246 (371)
71 2ojl_A Hypothetical protein; B 24.1 27 0.00094 25.0 1.2 21 1-21 18-38 (108)
72 1nho_A Probable thioredoxin; b 24.0 78 0.0027 18.8 3.3 23 108-135 62-84 (85)
73 1v98_A Thioredoxin; oxidoreduc 23.8 1.3E+02 0.0046 20.0 4.8 34 100-136 105-138 (140)
74 2c7f_A Alpha-L-arabinofuranosi 23.4 95 0.0032 26.8 4.8 26 4-29 198-225 (513)
75 2d74_B Translation initiation 23.2 1.4E+02 0.0047 22.3 5.1 37 91-135 65-101 (148)
76 2vml_A Phycocyanin alpha chain 22.7 90 0.0031 23.3 4.0 53 9-61 53-106 (162)
77 1qw9_A Arabinosidase, alpha-L- 22.7 1E+02 0.0034 26.5 4.8 26 4-29 190-217 (502)
78 2o8v_B Thioredoxin 1; disulfid 22.1 1.5E+02 0.005 19.8 4.7 32 101-135 96-127 (128)
79 3d22_A TRXH4, thioredoxin H-ty 22.0 1.8E+02 0.006 19.2 8.1 33 102-138 102-134 (139)
80 2y2w_A Arabinofuranosidase; hy 21.1 1.1E+02 0.0037 27.3 4.8 26 4-29 230-257 (574)
81 1lu4_A Soluble secreted antige 21.1 1.7E+02 0.0058 18.7 6.0 30 1-30 35-64 (136)
82 3eyt_A Uncharacterized protein 20.3 1E+02 0.0036 20.6 3.7 31 105-138 124-154 (158)
83 2j23_A Thioredoxin; immune pro 20.2 1.9E+02 0.0064 18.8 7.9 32 100-135 89-120 (121)
84 1rw3_A POL polyprotein; RNA an 20.1 18 0.00062 30.5 -0.5 34 100-133 197-230 (455)
85 2cvb_A Probable thiol-disulfid 20.0 60 0.0021 22.9 2.4 33 107-139 125-162 (188)
No 1
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=99.79 E-value=1.1e-19 Score=131.21 Aligned_cols=75 Identities=23% Similarity=0.292 Sum_probs=68.0
Q ss_pred CCcchhhHHHHHHHHHhhCCC-cEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchhHHHhhhcc
Q 041777 1 MCFCRGHAMTTKHMLEEAFPG-ITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANR 79 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~-i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~~~~~~~NK 79 (149)
+|||+..|.++++.|.++||+ +.|+++.-|
T Consensus 12 ~C~y~~ra~~laqeLl~~Fp~~l~V~~~l~p------------------------------------------------- 42 (96)
T 2npb_A 12 ACGYKPKYLQLKEKLEHEFPGCLDICGEGTP------------------------------------------------- 42 (96)
T ss_dssp CSCHHHHHHHHHHHHHHHSBTTEEEEECCCS-------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHhCCcceEEEEEEcC-------------------------------------------------
Confidence 699999999999999999998 888887311
Q ss_pred hhhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhccccccC
Q 041777 80 HGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNSE 142 (149)
Q Consensus 80 ~~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~~ 142 (149)
.++|+|||++||++||||+++||||+++|++|.|++++++.+...
T Consensus 43 ------------------~~~G~FEV~vng~lV~SKk~~ggFP~~~el~q~I~~~i~~~~~~~ 87 (96)
T 2npb_A 43 ------------------QVTGFFEVTVAGKLVHSKKRGDGYVDTESKFRKLVTAIKAALAQC 87 (96)
T ss_dssp ------------------SCCSCCEEEETTEEEEETTTTCCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCcEEEEEECCEEEEEEecCCCCCChHHHHHHHHHHHhhhhcCC
Confidence 589999999999999999999999999999999999998877544
No 2
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=99.71 E-value=1.6e-17 Score=121.69 Aligned_cols=44 Identities=25% Similarity=0.505 Sum_probs=41.3
Q ss_pred cCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccccc
Q 041777 98 KNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNS 141 (149)
Q Consensus 98 ~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~ 141 (149)
.++|+|||++||++||||+++|+||+++||+|+|++++++.|..
T Consensus 45 ~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~Vrd~i~p~r~l 88 (104)
T 2oka_A 45 GTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQRDL 88 (104)
T ss_dssp ECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHHCSSCC-
T ss_pred CCCceEEEEECCEEEEEEecCCCCCCHHHHHHHHHHHhCcCccC
Confidence 47999999999999999999999999999999999999998864
No 3
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=99.70 E-value=2.3e-17 Score=121.02 Aligned_cols=44 Identities=27% Similarity=0.529 Sum_probs=37.1
Q ss_pred cCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccccc
Q 041777 98 KNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNS 141 (149)
Q Consensus 98 ~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~ 141 (149)
.++|+|||++||++||||+++||||+++||+++|++++++.|..
T Consensus 43 ~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~Vrd~i~p~r~l 86 (105)
T 2p0g_A 43 DTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDLIDPERDL 86 (105)
T ss_dssp ESTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHTTC------
T ss_pred CCCceEEEEECCEEEEEEecCCCCCCHHHHHHHHHHHhCcCccc
Confidence 47999999999999999999999999999999999999987743
No 4
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=99.70 E-value=2.1e-17 Score=121.15 Aligned_cols=44 Identities=25% Similarity=0.510 Sum_probs=41.5
Q ss_pred cCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccccc
Q 041777 98 KNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNS 141 (149)
Q Consensus 98 ~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~ 141 (149)
.++|+|||++||++||||+++||||+++||+|+|++++++.|..
T Consensus 47 ~~~G~FEV~vng~lV~SKk~~ggFPe~~elkq~Vr~~i~p~~~l 90 (105)
T 2fa8_A 47 STGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLIDPERDL 90 (105)
T ss_dssp ECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHHCTTCCC
T ss_pred CCCcEEEEEECCEEEEEeccCCCCCCHHHHHHHHHHHhCcCccC
Confidence 47999999999999999999999999999999999999998754
No 5
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=99.54 E-value=9.2e-16 Score=114.41 Aligned_cols=70 Identities=33% Similarity=0.496 Sum_probs=62.3
Q ss_pred CCcchhhHHHHHHHHHhhCCCcEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchhHHHhhhcch
Q 041777 1 MCFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRH 80 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~~~~~~~NK~ 80 (149)
.|||..-+.++++.|.+.||+..|++.
T Consensus 34 ~C~~~~ra~~laqeLl~tFp~~~V~l~----------------------------------------------------- 60 (117)
T 2ljk_A 34 PCGFEATYLELASAVKEQYPGIEIESR----------------------------------------------------- 60 (117)
T ss_dssp TTTCHHHHHHHHHHHTTTCSSSCCEEE-----------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHhhCCcceEEEe-----------------------------------------------------
Confidence 499999999999999999999765431
Q ss_pred hhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccc
Q 041777 81 GTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLR 139 (149)
Q Consensus 81 ~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~ 139 (149)
-.++|+|||++||++||||+++||||+.+||+++|++++..+.
T Consensus 61 ----------------pg~~G~FeV~v~g~li~sk~~~g~FPe~~el~~~Vrd~~~g~~ 103 (117)
T 2ljk_A 61 ----------------LGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNGET 103 (117)
T ss_dssp ----------------ECSSSCEEEETTSSCCBCHHHHCSCCCTTTTTHHHHHHTTTSC
T ss_pred ----------------cCCCceEEEEECCEEEEEEccCCCCCCHHHHHHHHHHhhCCCC
Confidence 2469999999999999999999999999999999999987653
No 6
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=99.44 E-value=6.2e-14 Score=103.31 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=37.0
Q ss_pred cCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccccc
Q 041777 98 KNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNS 141 (149)
Q Consensus 98 ~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~ 141 (149)
.++|+|||++||++||||+++||||+.+||+|+|++++++.|..
T Consensus 48 ~~~G~FeV~vng~lVwsRk~~ggFPe~keLkq~Vrd~i~p~r~L 91 (108)
T 2ojl_A 48 GTGGVFRIHYNGAPLWDREVDGGFPEAKVLKQRVRDHLDPGRPL 91 (108)
T ss_dssp ECTTCEEEEETTEEEEEHHHHCSCCCHHHHHHHHHHHC------
T ss_pred CCCceEEEEECCEEEEEEccCCCCCCHHHHHHHHHHHhCcCccc
Confidence 47899999999999999999999999999999999999987643
No 7
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=99.35 E-value=4.2e-13 Score=98.75 Aligned_cols=42 Identities=29% Similarity=0.480 Sum_probs=36.8
Q ss_pred cCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhccccc
Q 041777 98 KNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRN 140 (149)
Q Consensus 98 ~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~ 140 (149)
.++|+|||++||++||||+ +|+||+.+||+|+|+++++|.|.
T Consensus 52 g~gG~FeV~vdg~lVwsRk-~gGFPd~keLkq~VRd~i~p~~~ 93 (107)
T 3dex_A 52 GTGGVFVVRVDDEVVWDRR-EQGFPEPTAVKRLVRDRVAPEKS 93 (107)
T ss_dssp ESSSCEEEEETTEEEEEHH-HHCSCCHHHHHHHHHHTTC----
T ss_pred CCCceEEEEECCEEEEEec-CCCCCCHHHHHHHHHHHhCCCCC
Confidence 3799999999999999999 99999999999999999999885
No 8
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=76.95 E-value=2.4 Score=30.71 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.5
Q ss_pred EEEECCEEEEeecccCCCCCHHHHHHHHHH
Q 041777 104 EVFCDGELVFSKLMEQRFPGEFELRELVSR 133 (149)
Q Consensus 104 EV~~ng~lV~SKl~~grfP~~~el~~~I~~ 133 (149)
-+.+||+.+.+ ||.|+.+||.+.+.=
T Consensus 75 ~~~VDGevv~~----G~yPt~eEl~~~lgi 100 (110)
T 3kgk_A 75 LLLLDGETVMA----GRYPKRAELARWFGI 100 (110)
T ss_dssp EEEETTEEEEE----SSCCCHHHHHHHHTC
T ss_pred EEEECCEEEEe----ccCCCHHHHHHHhCC
Confidence 57899999876 999999999998763
No 9
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=76.33 E-value=2.7 Score=30.27 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.5
Q ss_pred EEEECCEEEEeecccCCCCCHHHHHHHHH
Q 041777 104 EVFCDGELVFSKLMEQRFPGEFELRELVS 132 (149)
Q Consensus 104 EV~~ng~lV~SKl~~grfP~~~el~~~I~ 132 (149)
-+.+||+.+.+ ||.|+.+||.+.+.
T Consensus 78 ~~~VDGevv~~----G~yPt~eEl~~~lg 102 (106)
T 3ktb_A 78 ITLVDGEIAVS----QTYPTTKQMSEWTG 102 (106)
T ss_dssp EEEETTEEEEC----SSCCCHHHHHHHHC
T ss_pred EEEECCEEEEe----ccCCCHHHHHHHhC
Confidence 57899999875 99999999998763
No 10
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=67.76 E-value=34 Score=25.15 Aligned_cols=128 Identities=6% Similarity=-0.005 Sum_probs=65.2
Q ss_pred CCcchhhHHHHHHHHHhhCCCcEEecccCCCchH--HHHHHHHHhHHHHH-----------HHHHHhh-Cch--------
Q 041777 1 MCFCRGHAMTTKHMLEEAFPGITVTLANHPRPLL--KRLMGIVIPILQGG-----------VIVIIMG-GEQ-------- 58 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~i~i~g~nYpp~~~--~~~lak~l~~~q~~-----------~i~~i~~-G~~-------- 58 (149)
.|+|=+.|+..-+-+.++||+ +|+-..+|.+.. -...|++.-.++-. +.-.+.. |.+
T Consensus 35 ~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~~~lf~a~~~~~~~~~~~~~l~ 113 (193)
T 3hz8_A 35 FCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLK 113 (193)
T ss_dssp TCHHHHHHHHHHHHHHTTCCT-TEEEEEEECCCSGGGHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHTSCCCTTSHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCC-CeEEEEecCCCCcccHHHHHHHHHHHHcCchhHHhHHHHHHHHHHHhCcCCCCHHHHH
Confidence 499999999888888999997 444444554311 13344444333211 1111111 111
Q ss_pred -hhhhc-CCCCCchhHHHhhhcchhhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhc
Q 041777 59 -IFQKL-GYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLY 136 (149)
Q Consensus 59 -if~~l-g~~~~P~~~~~~~~NK~~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~ 136 (149)
+...+ |++ +..+-..+.......-+-- .......+.-+|+=-+.+||+.+++ |. +.+++.++|+..+.
T Consensus 114 ~~a~~~~Gld-~~~~~~~~~s~~~~~~v~~---~~~~a~~~gv~gtPt~vvng~~~~~----~~--~~e~l~~~i~~ll~ 183 (193)
T 3hz8_A 114 KWLGEQTAFD-GKKVLAAYESPESQARADK---MQELTETFQIDGVPTVIVGGKYKVE----FA--DWESGMNTIDLLAD 183 (193)
T ss_dssp HHHHHCTTTT-HHHHHHHHHSHHHHHHHHH---HHHHHHHTTCCSSSEEEETTTEEEC----CS--SHHHHHHHHHHHHH
T ss_pred HHHHHccCCC-HHHHHHHHcCHHHHHHHHH---HHHHHHHhCCCcCCEEEECCEEEec----CC--CHHHHHHHHHHHHH
Confidence 12223 553 2222222222222111110 1112234555666666789999887 33 78999999988776
Q ss_pred ccc
Q 041777 137 NLR 139 (149)
Q Consensus 137 ~~~ 139 (149)
..|
T Consensus 184 k~r 186 (193)
T 3hz8_A 184 KVR 186 (193)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 11
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=67.36 E-value=22 Score=22.79 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=23.0
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
++-++-||+.++. ..+..+.++|.+.|++.+
T Consensus 74 t~~~~~~G~~~~~---~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 74 TVLLFYNGKEILR---ESRFISLENLERTIQLFE 104 (105)
T ss_dssp EEEEEETTEEEEE---EESSCCHHHHHHHHHTTC
T ss_pred EEEEEeCCeEEEE---EeCCcCHHHHHHHHHHhh
Confidence 4666778988864 234668999999998765
No 12
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=65.34 E-value=5.1 Score=28.10 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=16.7
Q ss_pred cCCceEEEEECCEEEEee
Q 041777 98 KNSGAFEVFCDGELVFSK 115 (149)
Q Consensus 98 ~~~GaFEV~~ng~lV~SK 115 (149)
.++|...|++||+.||.|
T Consensus 25 tttGkrvi~VDGkev~r~ 42 (90)
T 3mx7_A 25 TTSGKRVVYVDGKEEIRK 42 (90)
T ss_dssp TTTCCEEEEETTEEEEEE
T ss_pred cccceEEEEECCEEEEec
Confidence 579999999999999987
No 13
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=63.78 E-value=38 Score=24.33 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=63.4
Q ss_pred CCcchhhHHHHHHHHHhhCCCcEEecccCCCc--hHHHHHHHHHhHHHH-----HHHHHHhh-----Cc---------hh
Q 041777 1 MCFCRGHAMTTKHMLEEAFPGITVTLANHPRP--LLKRLMGIVIPILQG-----GVIVIIMG-----GE---------QI 59 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~i~i~g~nYpp~--~~~~~lak~l~~~q~-----~~i~~i~~-----G~---------~i 59 (149)
.|+|=+.++..-+-+.++||+ +|.-..+|.+ +.-...+++.-.++- -+.-.++. |. ++
T Consensus 36 ~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~~~~~~~~l~~~ 114 (192)
T 3h93_A 36 GCPHCYAFEPTIVPWSEKLPA-DVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHKKLATPEEMADF 114 (192)
T ss_dssp TCHHHHHHHHHHHHHHHTCCT-TEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCCCCCSHHHHHHH
T ss_pred CChhHHHhhHHHHHHHHhCCC-CeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcCCCCHHHHHHH
Confidence 499999999988889999997 3333345543 222233333322221 01111111 11 12
Q ss_pred hhhcCCCCCchhHHHhhhcchhhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhccc
Q 041777 60 FQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNL 138 (149)
Q Consensus 60 f~~lg~~~~P~~~~~~~~NK~~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~ 138 (149)
...+|++ ...+...+........+-. ....-..+.-+|+=-+.+||+.+++- .+..+.+++.++|+..+...
T Consensus 115 a~~~Gld-~~~~~~~~~~~~~~~~v~~---~~~~a~~~gv~gtPt~~vng~~~~~~---~G~~~~e~l~~~i~~l~~k~ 186 (192)
T 3h93_A 115 LAGKGVD-KEKFLSTYNSFAIKGQMEK---AKKLAMAYQVTGVPTMVVNGKYRFDI---GSAGGPEETLKLADYLIEKE 186 (192)
T ss_dssp HHTTTCC-HHHHHHHHTCHHHHHHHHH---HHHHHHHHTCCSSSEEEETTTEEEEH---HHHTSHHHHHHHHHHHHHHH
T ss_pred HHHcCCC-HHHHHHHhhCHHHHHHHHH---HHHHHHHhCCCCCCeEEECCEEEecc---cccCCHHHHHHHHHHHHHHH
Confidence 3345553 2222222222222111111 01111234445655666799998871 12335788888888766543
No 14
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=61.38 E-value=42 Score=24.03 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=24.8
Q ss_pred CCcchhhHHHH-HHHHHhhCC---CcEEecccCCCc
Q 041777 1 MCFCRGHAMTT-KHMLEEAFP---GITVTLANHPRP 32 (149)
Q Consensus 1 sCgyr~~f~~~-~~~l~~~yP---~i~i~g~nYpp~ 32 (149)
.|.|=..|... .+.|.++|| +++++--.+|..
T Consensus 22 ~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p~~ 57 (186)
T 3bci_A 22 KCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFL 57 (186)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECCCS
T ss_pred CChhHHHHHHHHHHHHHHHhccCCeEEEEEEecCcC
Confidence 48888888775 478888997 588888888754
No 15
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=56.58 E-value=9.7 Score=22.92 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=16.1
Q ss_pred CCEEEEeecccCCCCCHHHHHHHH
Q 041777 108 DGELVFSKLMEQRFPGEFELRELV 131 (149)
Q Consensus 108 ng~lV~SKl~~grfP~~~el~~~I 131 (149)
||+.++. |..|+.++|.+.|
T Consensus 57 ~G~~~~~----G~~~~~~~l~~~l 76 (77)
T 1ilo_A 57 DGELKIM----GRVASKEEIKKIL 76 (77)
T ss_dssp TTEEEEC----SSCCCHHHHHHHC
T ss_pred CCEEEEc----CCCCCHHHHHHHh
Confidence 8988876 7778999988764
No 16
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=52.64 E-value=61 Score=23.24 Aligned_cols=131 Identities=8% Similarity=-0.021 Sum_probs=62.9
Q ss_pred CCcchhhHHHHHHHHHhhCCC-cEEecccCCCchHHHHHHHHHhHHHHH----HHHHHhh-----Cc---------hhhh
Q 041777 1 MCFCRGHAMTTKHMLEEAFPG-ITVTLANHPRPLLKRLMGIVIPILQGG----VIVIIMG-----GE---------QIFQ 61 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~-i~i~g~nYpp~~~~~~lak~l~~~q~~----~i~~i~~-----G~---------~if~ 61 (149)
.|+|=+.++..-+.+.++||+ +.+.--+.+-.+.-...+++.-.++-. +.-.++. |. .+..
T Consensus 36 ~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~s~~aa~a~~aa~~~g~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~ 115 (195)
T 3hd5_A 36 TCPHCAAIEPMVEDWAKTAPQDVVLKQVPIAFNAGMKPLQQLYYTLQALERPDLHPKVFTAIHTERKRLFDKKAMGEWAA 115 (195)
T ss_dssp TCHHHHHHHHHHHHHHHTCCTTEEEEEEECCSSGGGHHHHHHHHHHHHTTCTTHHHHHHHHHHTSCCCCCSHHHHHHHHH
T ss_pred CCccHHHhhHHHHHHHHHCCCCeEEEEEecccCcchHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 499989998888889999996 555443333223333333333332210 0000110 11 1233
Q ss_pred hcCCCCCchhHHHhhhcchhhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCH-HHHHHHHHHHhccc
Q 041777 62 KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGE-FELRELVSRKLYNL 138 (149)
Q Consensus 62 ~lg~~~~P~~~~~~~~NK~~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~-~el~~~I~~~l~~~ 138 (149)
.+|++ +..+-..+........+-. ..-....+.-+|+=-+.+||+.+++ ....++. +++.++|+.-+...
T Consensus 116 ~~Gld-~~~~~~~~~s~~~~~~v~~---~~~~a~~~gv~gtPt~ving~~~~~---g~~~~~~~e~~~~~i~~L~~~~ 186 (195)
T 3hd5_A 116 SQGVD-RAKFDSVFDSFSVQTQVQR---ASQLAEAAHIDGTPAFAVGGRYMTS---PVLAGNDYAGALKVVDQLIVQS 186 (195)
T ss_dssp HTTCC-HHHHHHHHTCHHHHHHHHH---HHHHHHHTTCCSSSEEEETTTEEEC---TTTTTGGGTTHHHHHHHHHHHH
T ss_pred HhCCC-HHHHHHHHcCHHHHHHHHH---HHHHHHHhCCCcCceEEECCEEEeC---ccccCChHHHHHHHHHHHHHHH
Confidence 34553 2222222222221111111 1112234455676677789999887 2333455 67777776655443
No 17
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=52.26 E-value=40 Score=21.01 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=22.6
Q ss_pred ceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
=++-++-||+.+.. -.|. +.++|.+.|++.|
T Consensus 75 Pt~~~~~~g~~~~~--~~g~--~~~~l~~~l~~~l 105 (105)
T 3m9j_A 75 PTFQFFKKGQKVGE--FSGA--NKEKLEATINELV 105 (105)
T ss_dssp SEEEEEETTEEEEE--EESS--CHHHHHHHHHHHC
T ss_pred cEEEEEECCeEEEE--EeCC--CHHHHHHHHHHhC
Confidence 35777788988764 2344 8899999998764
No 18
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=52.04 E-value=54 Score=22.45 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=23.2
Q ss_pred CCcchhhHHHHHHHHHhhCCCcEEecccCCC
Q 041777 1 MCFCRGHAMTTKHMLEEAFPGITVTLANHPR 31 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~i~i~g~nYpp 31 (149)
.|++=+.....-+-+.++|++++|.+-+..+
T Consensus 48 ~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~ 78 (165)
T 3ha9_A 48 WCPSCVYMADLLDRLTEKYREISVIAIDFWT 78 (165)
T ss_dssp TCTTHHHHHHHHHHHHHHCTTEEEEEEECCS
T ss_pred CCcchhhhHHHHHHHHHHcCCcEEEEEEecc
Confidence 4777666666666678889999988877763
No 19
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=51.80 E-value=18 Score=24.45 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=24.1
Q ss_pred EEEEECCEEEEeecccCCCCCHHHHHHHHHHHhccccccCC
Q 041777 103 FEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNSEG 143 (149)
Q Consensus 103 FEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~~~ 143 (149)
|-|.-||+.++... ....++.++|.+.|++++...+..+.
T Consensus 110 ~lid~~G~i~~~~~-g~~~~~~~~l~~~i~~~~~~~~~~~~ 149 (152)
T 3gl3_A 110 FLIDRNGKVLLQHV-GFRPADKEALEQQILAALGGNEGHHH 149 (152)
T ss_dssp EEECTTSBEEEEEE-SCCTTTHHHHHHHHHHHTC-------
T ss_pred EEECCCCCEEEEEc-cCCCcCHHHHHHHHHHHHcccccccc
Confidence 44446898888633 33456789999999999877765543
No 20
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=50.92 E-value=29 Score=26.37 Aligned_cols=43 Identities=12% Similarity=0.208 Sum_probs=33.4
Q ss_pred CCceEEEEECCEEEE-e-------ecccCCCCCHHHHHHHHHHHhccccccC
Q 041777 99 NSGAFEVFCDGELVF-S-------KLMEQRFPGEFELRELVSRKLYNLRNSE 142 (149)
Q Consensus 99 ~~GaFEV~~ng~lV~-S-------Kl~~grfP~~~el~~~I~~~l~~~~~~~ 142 (149)
+-=+|-++.||+.|. + | ..|..|+.++|.+.|+..+...+-+.
T Consensus 95 siPT~~fFk~G~~v~vd~Gtgd~~k-~vGa~~~k~~l~~~ie~~~r~a~~g~ 145 (160)
T 2av4_A 95 DPVSVMFFYRNKHMMIDLGTGNNNK-INWPMNNKQEFIDIVETIFRGARKGR 145 (160)
T ss_dssp SSEEEEEEETTEEEEEECSSSCCSC-BCSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEECCEEEEEecCCCCcCe-EEeecCCHHHHHHHHHHHHHHhhcCC
Confidence 344588899999996 4 4 45788989999999999887766554
No 21
>2j96_A Phycoerythrocyanin alpha chain; electron transport, Z- to E-isomerization, transport, chromophore, bIle pigment, phycobilisome; HET: PVN; 2.25A {Mastigocladus laminosus} PDB: 2c7k_A* 2c7j_A* 2c7l_A*
Probab=46.26 E-value=37 Score=25.48 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=40.6
Q ss_pred HHHHHHHHhhCCCcEEecc-cCCCch--HHHHHHHHHhHHHHHHHHHHhhCchhhhh
Q 041777 9 MTTKHMLEEAFPGITVTLA-NHPRPL--LKRLMGIVIPILQGGVIVIIMGGEQIFQK 62 (149)
Q Consensus 9 ~~~~~~l~~~yP~i~i~g~-nYpp~~--~~~~lak~l~~~q~~~i~~i~~G~~if~~ 62 (149)
.+-.+.+.+++|++.=-|+ .|++.- ....+=-+-.++.+..-+++..+.++..-
T Consensus 53 ~~A~~~l~~~~P~l~~~ggn~y~~~~~~~~~C~RD~~~~LR~itYa~lagd~~~L~~ 109 (162)
T 2j96_A 53 EAAANHVYQKFPYTTQMQGPQYASTPEGKAKCVRDIDHYLRTISYCCVVGGTGPLDD 109 (162)
T ss_dssp HHHHHHHHHHSGGGTSSCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHCcCccCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 4456677889999765554 899999 88888888888888888876666665544
No 22
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=44.29 E-value=58 Score=20.53 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=23.0
Q ss_pred CceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 100 SGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 100 ~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
.=+|-++-||+.+..- .| ++.++|.+.|++.+
T Consensus 80 ~Pt~~~~~~G~~~~~~--~g--~~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 80 MPTFIFLKDGKLVDKT--VG--ADKDGLPTLVAKHA 111 (113)
T ss_dssp TTEEEEEETTEEEEEE--EC--CCTTHHHHHHHHHH
T ss_pred ccEEEEEeCCEEEEEE--ec--CCHHHHHHHHHHhh
Confidence 3357677799988642 34 47789999998876
No 23
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=44.00 E-value=90 Score=22.67 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=69.8
Q ss_pred CCcchhhHHHH---HHHHHhhCC-CcEEecccCCC-chHHHHHHHHHhHHHHH--------HHHHHhhCc----------
Q 041777 1 MCFCRGHAMTT---KHMLEEAFP-GITVTLANHPR-PLLKRLMGIVIPILQGG--------VIVIIMGGE---------- 57 (149)
Q Consensus 1 sCgyr~~f~~~---~~~l~~~yP-~i~i~g~nYpp-~~~~~~lak~l~~~q~~--------~i~~i~~G~---------- 57 (149)
.|+|=+.|+.. ...+.++|| +++++--++|. .+.-...|++.-.++-. .+.-.++.+
T Consensus 25 ~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~aa~a~~aA~~~g~~~~~~~~lf~a~~~~~~~~~~~~l~ 104 (189)
T 3l9v_A 25 YCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLGPLGHELTRAWALAMVMKETDVIEKAFFTAGMVEKRLHSPDDVR 104 (189)
T ss_dssp TCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSSSSTTHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTTCCCCSHHHHH
T ss_pred CChhHHHHhHhccchHHHHHhCCCCCEEEEEechhcccccHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCCCHHHHH
Confidence 49999999886 267888999 58888888876 44444555554333311 111111111
Q ss_pred hhhhhc-CCCCCchhHHHhhhcchhhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCH------HHHHHH
Q 041777 58 QIFQKL-GYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGE------FELREL 130 (149)
Q Consensus 58 ~if~~l-g~~~~P~~~~~~~~NK~~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~------~el~~~ 130 (149)
++...+ |++ ...+-..+........+-. .......+.-+|+=-+.+||+.+-+ .+...+. +++.++
T Consensus 105 ~~a~~~~Gld-~~~~~~~~~s~~~~~~v~~---~~~~a~~~gv~GtPt~~vng~~~v~---~~~~~~~~~~~~~~~~~~~ 177 (189)
T 3l9v_A 105 RVFMSATGIS-RGEYDRSIKSPAVNDMVAL---QERLFKEYGVRGTPSVYVRGRYHIN---NAAFGAFSVENFRSRYAAV 177 (189)
T ss_dssp HHHHHHHCCC-HHHHHHHTTSHHHHHHHHH---HHHHHHHTTCCSSSEEEETTTEEEC---GGGCCCSSHHHHHHHHHHH
T ss_pred HHHHHccCCC-HHHHHHHHhhHHHHHHHHH---HHHHHHHhCCCccCEEEECCEEEEC---ccccccccccchHHHHHHH
Confidence 123334 664 2222222222222211111 1112234555666667789987655 4445554 889999
Q ss_pred HHHHhcccc
Q 041777 131 VSRKLYNLR 139 (149)
Q Consensus 131 I~~~l~~~~ 139 (149)
|+.-+..++
T Consensus 178 i~~Li~k~~ 186 (189)
T 3l9v_A 178 VRKLLAGNP 186 (189)
T ss_dssp HHHHHCC--
T ss_pred HHHHHhCCC
Confidence 888776554
No 24
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=43.89 E-value=66 Score=21.04 Aligned_cols=38 Identities=3% Similarity=0.031 Sum_probs=26.6
Q ss_pred eEEEEE-CCEEEEeecccCCCCCHHHHHHHHHHHhccccccC
Q 041777 102 AFEVFC-DGELVFSKLMEQRFPGEFELRELVSRKLYNLRNSE 142 (149)
Q Consensus 102 aFEV~~-ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~~ 142 (149)
++-++- ||+.++. . . +..+.++|.+.|++++...+...
T Consensus 85 t~~~~~~~G~~~~~-~-~-G~~~~~~l~~~l~~~~~~~~~~~ 123 (126)
T 2l57_A 85 TTVFLDKEGNKFYV-H-Q-GLMRKNNIETILNSLGVKEGHHH 123 (126)
T ss_dssp EEEEECTTCCEEEE-E-E-SCCCHHHHHHHHHHHCCCCCCCC
T ss_pred EEEEECCCCCEEEE-e-c-CCCCHHHHHHHHHHHhccccccc
Confidence 344444 7887763 2 2 36788999999999998877543
No 25
>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma reesei}
Probab=43.73 E-value=16 Score=29.68 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=18.1
Q ss_pred CCceEEEEECCEEEEeecccC
Q 041777 99 NSGAFEVFCDGELVFSKLMEQ 119 (149)
Q Consensus 99 ~~GaFEV~~ng~lV~SKl~~g 119 (149)
.+|.|||.+||++|+++.--.
T Consensus 164 ~~Gf~~vW~dG~~v~~~~g~~ 184 (238)
T 2zzj_A 164 NTGYFKIWFDGAKVHEEYNVA 184 (238)
T ss_dssp TTEEEEEEETTEEEEEEEEEC
T ss_pred CCcEEEEEECCEEEEeecCcc
Confidence 689999999999999976533
No 26
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=43.48 E-value=66 Score=21.00 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=21.6
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
+|-++-||+.+.. ..|. +.++|.+.|++.|
T Consensus 87 t~~~~~~G~~~~~--~~G~--~~~~l~~~l~~~l 116 (116)
T 3qfa_C 87 TFQFFKKGQKVGE--FSGA--NKEKLEATINELV 116 (116)
T ss_dssp EEEEESSSSEEEE--EESC--CHHHHHHHHHHHC
T ss_pred EEEEEeCCeEEEE--EcCC--CHHHHHHHHHHhC
Confidence 4667778887765 2344 8999999998754
No 27
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=42.15 E-value=21 Score=25.55 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=22.4
Q ss_pred CCcchhhHHHHHHHHHhhCCCc--EEec
Q 041777 1 MCFCRGHAMTTKHMLEEAFPGI--TVTL 26 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~i--~i~g 26 (149)
.|+|.--+..+++.|.++||+- .|.+
T Consensus 22 ~C~w~lRa~~laqeLl~tF~~~l~eVsL 49 (107)
T 3dex_A 22 QCRWLPRAAWLAQELLTTFETELTELAL 49 (107)
T ss_dssp TTTCHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCCChHHHHHHHHHHHHhcccccceEEE
Confidence 4999999999999999999985 4544
No 28
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=42.14 E-value=57 Score=22.62 Aligned_cols=41 Identities=7% Similarity=0.170 Sum_probs=28.9
Q ss_pred eEEEEECCEEEEee-------cccCCCCCHHHHHHHHHHHhccccccC
Q 041777 102 AFEVFCDGELVFSK-------LMEQRFPGEFELRELVSRKLYNLRNSE 142 (149)
Q Consensus 102 aFEV~~ng~lV~SK-------l~~grfP~~~el~~~I~~~l~~~~~~~ 142 (149)
++-++-||+.+... .-.|..++.+|+.+.|++.+...+...
T Consensus 80 t~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~~~~~ 127 (142)
T 1qgv_A 80 TVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGR 127 (142)
T ss_dssp EEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHHTTTC
T ss_pred EEEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHHhcCC
Confidence 45666788887632 134667789999999999887665543
No 29
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=41.61 E-value=1.2e+02 Score=23.22 Aligned_cols=134 Identities=6% Similarity=0.005 Sum_probs=69.6
Q ss_pred CCcchhhHHH-HHHHHHhhCC---CcEEecccCCCchHHHHHHHHHhHH----H-HHHHHHHhhCc--------------
Q 041777 1 MCFCRGHAMT-TKHMLEEAFP---GITVTLANHPRPLLKRLMGIVIPIL----Q-GGVIVIIMGGE-------------- 57 (149)
Q Consensus 1 sCgyr~~f~~-~~~~l~~~yP---~i~i~g~nYpp~~~~~~lak~l~~~----q-~~~i~~i~~G~-------------- 57 (149)
.|.|=+.|+. +...|.++|+ +++++-.++|..+.-...|++.-.+ + +-+.-.++...
T Consensus 50 ~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p~~~~s~~Aa~aa~aa~~~~~f~~~~~aLF~~q~~~~~~~~~~~~~L 129 (226)
T 3f4s_A 50 TCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDYRGLKAAMLSHCYEKQEDYFNFNKAVFNSIDSWNYYNLSDLTLL 129 (226)
T ss_dssp TCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECCCSHHHHHHHHHGGGCCSHHHHHHHHHHHHHTGGGSCSSSTTCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCCCChhHHHHHHHHHHhhChHHHHHHHHHHHHhCHhhcccccCcHHHH
Confidence 5999999986 5677888884 5899999999866555455544432 1 22222233221
Q ss_pred -hhhhhcCCCCCchhHHHhhhcchhhHHHHHhhHHHHhhh-hcCCceEEEEE---CCEEEEeecc--cCCCCCHHHHHHH
Q 041777 58 -QIFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSC-LKNSGAFEVFC---DGELVFSKLM--EQRFPGEFELREL 130 (149)
Q Consensus 58 -~if~~lg~~~~P~~~~~~~~NK~~~~~~~ffl~N~i~~~-L~~~GaFEV~~---ng~lV~SKl~--~grfP~~~el~~~ 130 (149)
.+...+|++ ...+-..+.+.+...-+-. ....... +.-+|+=-+.+ ||+.++-... -.+.-+.+++.++
T Consensus 130 ~~iA~~~Gld-~~~~~~~l~s~~~~~~v~~---~~~~a~~~~GV~GtPtfvv~~~nG~~~~Ga~~~~~~G~~~~e~l~~~ 205 (226)
T 3f4s_A 130 QRIAALSNLK-QDAFNQCINDKKIMDKIVN---DKSLAINKLGITAVPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNV 205 (226)
T ss_dssp HHHHHHTTCC-HHHHHHHHTCHHHHHHHHH---HHHHHHHHHCCCSSCEEEEEECCTTCCCCGGGGEEESCCCHHHHHHH
T ss_pred HHHHHHcCCC-HHHHHHHHhCHHHHHHHHH---HHHHHHHHcCCCcCCEEEEEcCCCEEeeCCCCcccccccCHHHHHHH
Confidence 112234553 2222222222222111111 0111123 45566666677 9987643221 1223358999999
Q ss_pred HHHHhccc
Q 041777 131 VSRKLYNL 138 (149)
Q Consensus 131 I~~~l~~~ 138 (149)
|++.+...
T Consensus 206 I~~~l~~~ 213 (226)
T 3f4s_A 206 IDKLYGKA 213 (226)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 98876543
No 30
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=41.31 E-value=60 Score=19.83 Aligned_cols=33 Identities=21% Similarity=0.059 Sum_probs=23.8
Q ss_pred ceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhc
Q 041777 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLY 136 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~ 136 (149)
=++-++-||+.+.. . . +.++.+++.+.|++.+.
T Consensus 71 Pt~~~~~~g~~~~~-~-~-g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 71 PTVIFFKDGEPVDE-I-I-GAVPREEIEIRIKNLLG 103 (104)
T ss_dssp CEEEEEETTEEEEE-E-E-SCCCHHHHHHHHHHHHT
T ss_pred CEEEEEECCeEhhh-c-c-CCCCHHHHHHHHHHHhc
Confidence 45666678888863 2 2 45788999999988764
No 31
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=40.49 E-value=91 Score=21.73 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=64.3
Q ss_pred CCcchhhHHHHHHHHHhhCCCcEEecccCCCchHHH-HHHHHHhHHH-----HHHHHHHhhC---------chhhhhcCC
Q 041777 1 MCFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKR-LMGIVIPILQ-----GGVIVIIMGG---------EQIFQKLGY 65 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~i~i~g~nYpp~~~~~-~lak~l~~~q-----~~~i~~i~~G---------~~if~~lg~ 65 (149)
.|+|=+.++..-+-+.+++|+++++-.++|...... ..+++.-.++ +-+.-.++.. .++...+|+
T Consensus 33 ~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~~~l~~~a~~~Gl 112 (175)
T 3gyk_A 33 NCPYCRRAMAEVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANETGVLRIAREVGL 112 (175)
T ss_dssp TCHHHHHHHHHHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 488888888776667778999999888888653222 2222221111 0111111111 023344566
Q ss_pred CCCchhHHHhhhcchhhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhc
Q 041777 66 MKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLY 136 (149)
Q Consensus 66 ~~~P~~~~~~~~NK~~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~ 136 (149)
+ +..+...+........+-. ...+...+.-+|+=-+.+||+.++ | ..+.+++.+.|++.+.
T Consensus 113 d-~~~~~~~~~~~~~~~~v~~---~~~~a~~~gv~gtPt~~i~g~~~~-----G-~~~~~~l~~~i~~~l~ 173 (175)
T 3gyk_A 113 D-TEQLQRDMEAPEVTAHIAQ---SMALAQKLGFNGTPSFVVEDALVP-----G-FVEQSQLQDAVDRARK 173 (175)
T ss_dssp C-HHHHHHHTTCHHHHHHHHH---HHHHHHHHTCCSSSEEEETTEEEC-----S-CCCHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHhChHHHHHHHH---HHHHHHHcCCccCCEEEECCEEee-----C-CCCHHHHHHHHHHHHh
Confidence 4 3333333322222211111 111223344455555667997554 3 4578899999988764
No 32
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=39.91 E-value=50 Score=21.32 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=27.8
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccccc
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNS 141 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~ 141 (149)
++-++-||+.++. .-+..+.+++.+.|++++.+.+..
T Consensus 74 t~~~~~~G~~~~~---~~G~~~~~~l~~~l~~~~~~~~~~ 110 (112)
T 2voc_A 74 TLLVLKDGEVVET---SVGFKPKEALQELVNKHLLEHHHH 110 (112)
T ss_dssp EEEEEETTEEEEE---EESCCCHHHHHHHHHTTSCSCCCC
T ss_pred EEEEEeCCEEEEE---EeCCCCHHHHHHHHHHHHHhhccc
Confidence 4666679998864 224678999999999998877653
No 33
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=39.09 E-value=40 Score=22.17 Aligned_cols=28 Identities=25% Similarity=0.157 Sum_probs=20.3
Q ss_pred ECCEEEEeecccCCCCCHHHHHHHHHHHhcc
Q 041777 107 CDGELVFSKLMEQRFPGEFELRELVSRKLYN 137 (149)
Q Consensus 107 ~ng~lV~SKl~~grfP~~~el~~~I~~~l~~ 137 (149)
-||+.++.. .| ..+.+++.+.|++.+..
T Consensus 119 ~~G~i~~~~--~g-~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 119 KTGQLRHFQ--AG-GSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp TTCBEEEEE--ES-CSTTHHHHHHHHHHHTT
T ss_pred CCCcEEEEe--cC-CCCHHHHHHHHHHHHhc
Confidence 488888752 23 46788999999988754
No 34
>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus}
Probab=38.87 E-value=26 Score=28.66 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=27.3
Q ss_pred ceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
.+-.|++||+.|+. +|++.+.++|.+..++..
T Consensus 422 ~v~~v~v~G~~v~~---~g~~~d~~~i~~~~~~~~ 453 (458)
T 4f0l_A 422 HVCDVWVRGVKQVE---GGRHRLRDEAERAFQKAL 453 (458)
T ss_dssp EEEEEEETTEEEEE---TTEETTHHHHHHHHHHHH
T ss_pred CceEEEECCEEEEE---CCEeCCHHHHHHHHHHHH
Confidence 57778999999997 677899999999888765
No 35
>2vmh_A GH95CBM51, fibronectin type III domain protein; carbohydrate-binding module, sugar-binding protein, galactose, fucosidase; 1.50A {Clostridium perfringens} SCOP: b.18.1.33 PDB: 2vmi_A 2vmg_A*
Probab=38.35 E-value=21 Score=26.52 Aligned_cols=16 Identities=50% Similarity=0.700 Sum_probs=14.1
Q ss_pred CCceEEEEECCEEEEe
Q 041777 99 NSGAFEVFCDGELVFS 114 (149)
Q Consensus 99 ~~GaFEV~~ng~lV~S 114 (149)
.+-.|+|+.||+++|+
T Consensus 89 gsv~F~V~~Dg~~l~~ 104 (151)
T 2vmh_A 89 ASISFEVYLDNEKVFD 104 (151)
T ss_dssp CEEEEEEEETTEEEEE
T ss_pred ccEEEEEEcCCeEEEE
Confidence 4678999999999995
No 36
>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A*
Probab=38.01 E-value=43 Score=27.62 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=29.0
Q ss_pred CCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 99 NSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 99 ~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
.+.+=.|++||+.|+. +|++++.++|.+..++..
T Consensus 415 ~~~v~~v~v~G~~v~~---~g~~~~~~~i~~~~~~~~ 448 (453)
T 3mdu_A 415 DRQVRDVMVAGRWVVR---DGRHAGEERSARAFVQVL 448 (453)
T ss_dssp GGGEEEEEETTEEEEB---TTBCTTHHHHHHHHHHHH
T ss_pred CCCeeEEEECCEEEEE---CCccCCHHHHHHHHHHHH
Confidence 3568899999999997 788999999998887765
No 37
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=35.16 E-value=98 Score=20.52 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=22.4
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
+|-++-||+.++. . .| ++.++|.+.|++.+
T Consensus 94 t~~~~~~G~~~~~-~-~G--~~~~~l~~~l~~~l 123 (124)
T 1xfl_A 94 TFMFLKEGKILDK-V-VG--AKKDELQSTIAKHL 123 (124)
T ss_dssp EEEEEETTEEEEE-E-ES--CCHHHHHHHHHHHC
T ss_pred EEEEEECCEEEEE-E-eC--CCHHHHHHHHHHhc
Confidence 5777779998874 2 35 38899999998765
No 38
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=34.90 E-value=61 Score=24.74 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=27.0
Q ss_pred ceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhccccccC
Q 041777 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNSE 142 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~~ 142 (149)
|.=.+++||+.+++ +..+.++|.+.|++.+...+...
T Consensus 196 ~vPt~~i~G~~~~~-----G~~~~~~l~~~l~~~~~~~~~~~ 232 (243)
T 2hls_A 196 SVPSIAINGYLVFV-----GVPYEEDFLDYVKSAAEGRLTVK 232 (243)
T ss_dssp SSSEEEETTEEEEE-----SCCCHHHHHHHHHHHHTTCCCCC
T ss_pred eeCeEEECCEEEEe-----CCCCHHHHHHHHHHHhhcccccC
Confidence 33345669987644 45678999999999998777654
No 39
>2vng_A CPE0329; family 51 carbohydrate binding module, family 98 glycoside hydrolase, A-trisaccharide, blood group antigen, hydrolase; HET: A2G GAL FUC; 1.4A {Clostridium perfringens} SCOP: b.18.1.33 PDB: 2vno_A* 2vnr_A
Probab=34.79 E-value=25 Score=27.16 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=13.0
Q ss_pred eEEEEECCEEEEeec
Q 041777 102 AFEVFCDGELVFSKL 116 (149)
Q Consensus 102 aFEV~~ng~lV~SKl 116 (149)
.|+|+.||+++|+.-
T Consensus 109 ~F~V~~DGk~l~~S~ 123 (180)
T 2vng_A 109 KIEVVVDGKVIYSTI 123 (180)
T ss_dssp EEEEEETTEEEEETT
T ss_pred EEEEEeCCeEEEEcC
Confidence 599999999999843
No 40
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=34.18 E-value=51 Score=27.24 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=19.6
Q ss_pred eEEEEECCEEEEeecccCCCCCHHH
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFE 126 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~e 126 (149)
...+..++..+.||+-+|.||+.+.
T Consensus 222 ~i~f~~~~~~~~srLidg~fPdy~~ 246 (366)
T 3d1g_A 222 NIRAHVGDFIFTSKLVDGRFPDYRR 246 (366)
T ss_dssp EEEEEETTEEEEEECCSSCCCCHHH
T ss_pred EEEEEECCEEEEEEEecccCCChhh
Confidence 4445557777889999999999876
No 41
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=32.62 E-value=91 Score=19.39 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=21.7
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
+|-++-||+.++. .-+..+.+++.+.|++.+
T Consensus 76 t~~~~~~G~~~~~---~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 76 TIMVFKGGKKCET---IIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EEEEESSSSEEEE---EESCCCHHHHHHHHHHHC
T ss_pred EEEEEeCCEEEEE---EeCCCCHHHHHHHHHHHh
Confidence 4556668888764 224667889999998765
No 42
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=32.34 E-value=1.6e+02 Score=22.06 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=27.2
Q ss_pred CCcchhhHH-HHHHHHHhhC---CCcEEecccCCCchHHH
Q 041777 1 MCFCRGHAM-TTKHMLEEAF---PGITVTLANHPRPLLKR 36 (149)
Q Consensus 1 sCgyr~~f~-~~~~~l~~~y---P~i~i~g~nYpp~~~~~ 36 (149)
.|.|=+.|. ++...|+++| +.++++-.++|..+.-.
T Consensus 26 ~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~pl~~~s~ 65 (205)
T 3gmf_A 26 TCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDM 65 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEECCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeCCCCcchH
Confidence 488888877 5678888888 45888888998766443
No 43
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=31.84 E-value=79 Score=19.57 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=24.5
Q ss_pred CceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 100 SGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 100 ~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
.=++-++-||+.+.. .-+..+.++|.+.|++.+
T Consensus 76 ~Pt~~~~~~g~~~~~---~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 76 IPTTLIFVNGQLVDS---LVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp SSEEEEEETTEEEEE---EESCCCHHHHHHHHHHHC
T ss_pred CCEEEEEcCCcEEEe---eeccCCHHHHHHHHHHHh
Confidence 345677788998875 224668999999998875
No 44
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=31.67 E-value=1e+02 Score=19.66 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=21.8
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
+|-++-||+.+.. ..|. +.++|.+.|++.+
T Consensus 82 t~~~~~~G~~~~~--~~G~--~~~~l~~~l~~~l 111 (112)
T 1syr_A 82 TFKVYKNGSSVDT--LLGA--NDSALKQLIEKYA 111 (112)
T ss_dssp EEEEEETTEEEEE--EESC--CHHHHHHHHHTTC
T ss_pred EEEEEECCcEEEE--EeCC--CHHHHHHHHHHhh
Confidence 4666678988764 2443 8999999998765
No 45
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A
Probab=31.61 E-value=53 Score=29.05 Aligned_cols=24 Identities=13% Similarity=0.004 Sum_probs=21.7
Q ss_pred chhhHHHHHHHHHhhCCCcEEecc
Q 041777 4 CRGHAMTTKHMLEEAFPGITVTLA 27 (149)
Q Consensus 4 yr~~f~~~~~~l~~~yP~i~i~g~ 27 (149)
|.+.|.++.+++++.||++++.+.
T Consensus 207 Y~~~~~~~a~Aik~~dP~I~lia~ 230 (504)
T 3ug3_A 207 YARAAKEYTKWMKVFDPTIKAIAV 230 (504)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 888999999999999999998663
No 46
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=31.14 E-value=50 Score=19.73 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=19.3
Q ss_pred CCcchhhHHHHHHHHHhhCC-CcEEecccC
Q 041777 1 MCFCRGHAMTTKHMLEEAFP-GITVTLANH 29 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP-~i~i~g~nY 29 (149)
.|++=+.+...-+.+.++|+ ++.+..-+.
T Consensus 13 ~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~ 42 (85)
T 1fo5_A 13 MCPHCPAAKRVVEEVANEMPDAVEVEYINV 42 (85)
T ss_dssp CSSCCCTHHHHHHHHHHHCSSSEEEEEEES
T ss_pred CCCchHHHHHHHHHHHHHcCCceEEEEEEC
Confidence 47776666666666777888 576655554
No 47
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=28.87 E-value=1e+02 Score=19.18 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=22.8
Q ss_pred ceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
=++-++-||+.++. . . +..+.+++.+.|++.+
T Consensus 76 Pt~~~~~~G~~~~~-~-~-G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 76 PTLLLFKNGEVAAT-K-V-GALSKGQLKEFLDANL 107 (108)
T ss_dssp SEEEEEETTEEEEE-E-E-SCCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCEEEEE-E-e-cCCCHHHHHHHHHHhh
Confidence 35666668888763 2 2 4568899999998876
No 48
>1kn1_A Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 3dbj_A* 2v8a_A* 1b33_A* 2vjt_A* 1all_A*
Probab=28.86 E-value=1.8e+02 Score=21.58 Aligned_cols=53 Identities=9% Similarity=-0.043 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCCCcEEec-ccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhh
Q 041777 9 MTTKHMLEEAFPGITVTL-ANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61 (149)
Q Consensus 9 ~~~~~~l~~~yP~i~i~g-~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~ 61 (149)
.+-.+.+.+++|++.--| ..||+.-+...+=-+-.++.+..-+++..+.++..
T Consensus 51 ~~A~~~l~~~~P~l~~~gg~~y~~~~~~~ClRD~~~~LRyitYa~lagd~~~L~ 104 (160)
T 1kn1_A 51 KQAGDQLFQKRPDVVSPGGNAYGEEMTATCLRDLDYYLRLVTYGIVSGDVTPIE 104 (160)
T ss_dssp HHHHHHHTTTSCTTSSSSCSSCSTTHHHHHHHHHHHHHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHCcCccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHcCchhHHH
Confidence 445667788899975555 58999999988888888888888887666666654
No 49
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=28.46 E-value=99 Score=19.28 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=24.8
Q ss_pred CceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhc
Q 041777 100 SGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLY 136 (149)
Q Consensus 100 ~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~ 136 (149)
.=++-++-||+.++. ..+..+.++|.+.|++.+.
T Consensus 77 ~Pt~~~~~~g~~~~~---~~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 77 VPQILYFKDGEYKGK---MAGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp SCEEEEEETTEEEEE---EESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCEEEEE---EeccCCHHHHHHHHHHHhc
Confidence 345677778988864 2246789999999998763
No 50
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=28.16 E-value=81 Score=19.45 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=22.3
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
++-++-||+.+.. ..+..+.+++.+.|++.|
T Consensus 76 t~~~~~~G~~~~~---~~g~~~~~~l~~~l~~~l 106 (106)
T 3die_A 76 TLIVFKDGQPVDK---VVGFQPKENLAEVLDKHL 106 (106)
T ss_dssp EEEEEETTEEEEE---EESCCCHHHHHHHHHTTC
T ss_pred EEEEEeCCeEEEE---EeCCCCHHHHHHHHHHhC
Confidence 4666668888874 224678899999998754
No 51
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=28.09 E-value=23 Score=24.04 Aligned_cols=35 Identities=20% Similarity=0.095 Sum_probs=24.2
Q ss_pred EEEEECCEEEEeecccCCCCCHHHHHHHHHHHhccccc
Q 041777 103 FEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRN 140 (149)
Q Consensus 103 FEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~ 140 (149)
|-|.-||+.++.. . +..+.++|.+.|++.+..++.
T Consensus 114 ~lid~~G~i~~~~--~-g~~~~~~l~~~l~~~~~~~~~ 148 (154)
T 3ia1_A 114 FVVDREGKVVALF--A-GRAGREALLDALLLAGADLEG 148 (154)
T ss_dssp EEECTTSEEEEEE--E-SBCCHHHHHHHHHHTTCCC--
T ss_pred EEECCCCCEEEEE--c-CCCCHHHHHHHHHhccCcccc
Confidence 4444578888753 2 356799999999998876654
No 52
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens}
Probab=28.08 E-value=56 Score=25.50 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=15.8
Q ss_pred CceEEEEECCEEEEeecc
Q 041777 100 SGAFEVFCDGELVFSKLM 117 (149)
Q Consensus 100 ~GaFEV~~ng~lV~SKl~ 117 (149)
++.+.||+||++|+++..
T Consensus 117 ~~~~~ly~NG~~V~t~~~ 134 (191)
T 2v73_A 117 GIGAKIFLNGSLVKTVSD 134 (191)
T ss_dssp TTEEEEEETTEEEEEEEC
T ss_pred CccEEEEECCEEEEEEec
Confidence 679999999999998743
No 53
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=27.90 E-value=43 Score=27.65 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=20.8
Q ss_pred CceEEEEECCEEEEeecccCCCCCHHH
Q 041777 100 SGAFEVFCDGELVFSKLMEQRFPGEFE 126 (149)
Q Consensus 100 ~GaFEV~~ng~lV~SKl~~grfP~~~e 126 (149)
++...+..++..+.||+-+|.||+.+.
T Consensus 231 ~~~i~f~~~~~~~~srLidg~fPdy~~ 257 (378)
T 1vpk_A 231 GRRVSLSTNDVETVMRVVDAEFPDYKR 257 (378)
T ss_dssp SSEEEEECSSEEEEEECCSSCCCCGGG
T ss_pred CCEEEEEECCEEEEEEeccccCCCHHH
Confidence 345555667788899999999998764
No 54
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=27.41 E-value=69 Score=22.86 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=29.9
Q ss_pred HHHhhhhcCCceEEEEECCEE----------EEeecccCCCCCHHHHHHHHHHHhc
Q 041777 91 NYIKSCLKNSGAFEVFCDGEL----------VFSKLMEQRFPGEFELRELVSRKLY 136 (149)
Q Consensus 91 N~i~~~L~~~GaFEV~~ng~l----------V~SKl~~grfP~~~el~~~I~~~l~ 136 (149)
..++..+.....|+|.++|-- ||=+.+.+ ++..+|.+.|++.+.
T Consensus 59 ~~l~~~~~~~~pf~l~l~g~g~F~~~~~p~vl~~~v~~~--~~L~~L~~~l~~~l~ 112 (184)
T 1vgj_A 59 NILKKIAEKYKKHEVKVKGIGVFPNPNYIRVIWAGIEND--EIIREMAREIEDELA 112 (184)
T ss_dssp HHHHHHHTTSBCEEEEEEEEEEEECSSSEEEEEEEEETC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCeEEEEeeEeeCCCCCCCcEEEEEecCC--HHHHHHHHHHHHHHH
Confidence 445454446688999998754 44445544 678888888887764
No 55
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=26.52 E-value=1.2e+02 Score=19.84 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=22.3
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHHH
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSRK 134 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~ 134 (149)
+|-++-||+.+.. . .|+ ++++|.+.|+++
T Consensus 76 T~~~~~~G~~v~~-~-~G~--~~~~l~~~i~k~ 104 (105)
T 3zzx_A 76 TFLFMKNGQKLDS-L-SGA--NYDKLLELVEKN 104 (105)
T ss_dssp EEEEEETTEEEEE-E-ESC--CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEE-E-eCc--CHHHHHHHHHhc
Confidence 5778889999865 3 453 788999998864
No 56
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=26.12 E-value=92 Score=19.14 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=22.0
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
++-++-||+.++.- -+..+.+++.+.|++.+
T Consensus 75 t~~~~~~g~~~~~~---~G~~~~~~l~~~l~~~l 105 (105)
T 1fb6_A 75 TVLFFKNGERKESI---IGAVPKSTLTDSIEKYL 105 (105)
T ss_dssp EEEEEETTEEEEEE---EECCCHHHHHHHHHHHC
T ss_pred EEEEEeCCeEEEEE---ecCCCHHHHHHHHHhhC
Confidence 46666789888642 24577889999988753
No 57
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=26.07 E-value=1e+02 Score=18.98 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=22.0
Q ss_pred ceEEEEECCEEEEeecccCCCCCHHHHHHHHHHH
Q 041777 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELVSRK 134 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~ 134 (149)
=++-++-||+.++. . . +.++.+++.+.|++.
T Consensus 76 Pt~~~~~~G~~~~~-~-~-G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 76 PTLMLVRDGKVIDK-K-V-GALPKSQLKAWVESA 106 (107)
T ss_dssp SEEEEEETTEEEEE-E-E-SCCCHHHHHHHHHHT
T ss_pred CEEEEEeCCEEEEE-e-c-CCCCHHHHHHHHHhc
Confidence 35666678988873 2 2 467889999998865
No 58
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=25.97 E-value=12 Score=29.17 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=19.9
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHH
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSR 133 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~ 133 (149)
.-++|+||.+|+|+-++...-..+++++++++
T Consensus 195 ~v~~Y~DDili~s~~~eeh~~~l~~v~~~L~~ 226 (255)
T 3fsi_A 195 ILLQYVDDLLLAATSELDCQQGTRALLQTLGN 226 (255)
T ss_dssp EEEEETTEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCeEEEeCCHHHHHHHHHHHHHHHHH
Confidence 46899999999997554333333444444443
No 59
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=25.97 E-value=66 Score=23.72 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=28.4
Q ss_pred CCcchhhH-HHHHHHHHhhCC-CcEEecccCCCc--hHHHHHHHHH
Q 041777 1 MCFCRGHA-MTTKHMLEEAFP-GITVTLANHPRP--LLKRLMGIVI 42 (149)
Q Consensus 1 sCgyr~~f-~~~~~~l~~~yP-~i~i~g~nYpp~--~~~~~lak~l 42 (149)
.|.|=+.| .++.+.|++.|| .++++-.++|.+ +.-...+++.
T Consensus 25 ~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~p~~~h~~s~~aaraa 70 (182)
T 3gn3_A 25 TCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQSQPWHMFSGVIVRCI 70 (182)
T ss_dssp TCHHHHHHHTTHHHHHHHHCTTTEEEEEEECCCTTSTTHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHhCCCCEEEEEEEcCCCCCccHHHHHHHH
Confidence 48877664 667788887779 489998898864 3334444443
No 60
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=25.69 E-value=95 Score=20.66 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=21.6
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhccccc
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRN 140 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~ 140 (149)
.|-|.=||+.++. .......+.+++.+.|++-....+.
T Consensus 110 ~~lid~~G~i~~~-~~g~~~~~~~~l~~~l~~l~~~~~~ 147 (154)
T 3kcm_A 110 TFVIDRHGVILKK-VVGAMEWDHPEVIAFLNNELSKARE 147 (154)
T ss_dssp EEEECTTSBEEEE-EESCCCTTSHHHHHHHHTC------
T ss_pred EEEECCCCcEEEE-EcCCCccccHHHHHHHHHHHHHhhh
Confidence 4555557888774 4444446788999998876554443
No 61
>1xg0_C B-phycoerythrin beta chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: a.1.1.3 PDB: 1qgw_C* 1xf6_C* 1lia_B* 1eyx_B* 2vjh_B* 1b8d_B*
Probab=24.95 E-value=70 Score=24.38 Aligned_cols=55 Identities=7% Similarity=-0.012 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCCcEEecc-cCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhh
Q 041777 8 AMTTKHMLEEAFPGITVTLA-NHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQK 62 (149)
Q Consensus 8 f~~~~~~l~~~yP~i~i~g~-nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~ 62 (149)
..+-.+.+.++||++.--|. .|++.-....+=-+-.++.+..-+++..+.++..-
T Consensus 52 v~~A~~~l~~~~P~l~~pGGn~y~~~r~~~ClRD~~~~LRyitYa~laGd~~~L~e 107 (177)
T 1xg0_C 52 VSDAVSGMICENPSLISPSGNCYTNRRMAACLRDGEIILRYVSYALLSGDASVLED 107 (177)
T ss_dssp HHHHHHHHHHHCGGGGSTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHHHHCcCccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 34556777889999865565 79998888888888888888888866665555443
No 62
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=24.84 E-value=58 Score=23.14 Aligned_cols=37 Identities=8% Similarity=-0.007 Sum_probs=19.1
Q ss_pred HHHHHHHhhCCCcEEe--ccc---CCCchHHHHHHHHHhHHH
Q 041777 10 TTKHMLEEAFPGITVT--LAN---HPRPLLKRLMGIVIPILQ 46 (149)
Q Consensus 10 ~~~~~l~~~yP~i~i~--g~n---Ypp~~~~~~lak~l~~~q 46 (149)
.+.+.+.+.-|++.|. |.| +++..+.+-+.+++..++
T Consensus 65 ~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~l~~ii~~l~ 106 (200)
T 4h08_A 65 ELAVVLKNTKFDVIHFNNGLHGFDYTEEEYDKSFPKLIKIIR 106 (200)
T ss_dssp HHHHHHHHSCCSEEEECCCSSCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEeeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 3444455555665443 433 455556655555555544
No 63
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=24.80 E-value=1e+02 Score=19.35 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=23.1
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhc
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLY 136 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~ 136 (149)
+|-++-||+.++. . . +..+.+++.+.|++.+.
T Consensus 80 t~~~~~~G~~~~~-~-~-G~~~~~~l~~~l~~~l~ 111 (112)
T 1t00_A 80 TLNVYQGGEVAKT-I-V-GAKPKAAIVRDLEDFIA 111 (112)
T ss_dssp EEEEEETTEEEEE-E-E-SCCCHHHHHHHTHHHHC
T ss_pred EEEEEeCCEEEEE-E-e-CCCCHHHHHHHHHHHhh
Confidence 5666778988763 2 2 45678999999988763
No 64
>4axd_A Inositol-pentakisphosphate 2-kinase; transferase, inositol kinase, phytic acid, protein kinase, I signalling; HET: ANP CIT; 2.05A {Arabidopsis thaliana} PDB: 4axc_A 4aqk_A* 4axf_A* 4axe_A* 2xam_A* 2xal_A* 2xan_A* 2xao_A* 2xar_A* 3udz_A* 3udt_A* 3uds_A*
Probab=24.78 E-value=85 Score=27.65 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=25.5
Q ss_pred CCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 99 NSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 99 ~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
.-+-|.|++||++||+-...|..=+...+.+.+.+.+
T Consensus 241 PqNNlrvF~~G~~i~~~~~~g~~~~~~~~~~~~~~~L 277 (456)
T 4axd_A 241 PQNNFRVFLNGSLILGGSGESTGRTSPEIGYAFEDAL 277 (456)
T ss_dssp CTTTEEEEETTEEEECCSCTTCCCCCHHHHHHHHHHT
T ss_pred CCccEEEEECCEEeecCCCCCccchhHHHHHHHHHHH
Confidence 5577999999999999776665544444444444444
No 65
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=24.59 E-value=1.4e+02 Score=20.01 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=26.7
Q ss_pred ceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccc
Q 041777 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLR 139 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~ 139 (149)
=++-++-||+.+.. . . +..+.++|.+.|++.+...+
T Consensus 111 Pt~~~~~~G~~~~~-~-~-G~~~~~~l~~~l~~~l~~~~ 146 (148)
T 3p2a_A 111 PTIMLYRNGKMIDM-L-N-GAVPKAPFDNWLDEQLSRDP 146 (148)
T ss_dssp SEEEEEETTEEEEE-E-S-SCCCHHHHHHHHHHHHHSCC
T ss_pred CEEEEEECCeEEEE-E-e-CCCCHHHHHHHHHHHhcccC
Confidence 35677778988873 2 2 45789999999999887654
No 66
>2k8e_A UPF0339 protein YEGP; protein structure initiative (PSI), northeast structur genomics consortium (NESG), ontario centre for structural P (OCSP); NMR {Escherichia coli} SCOP: d.348.1.1 d.348.1.1
Probab=24.37 E-value=1.1e+02 Score=22.35 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=26.2
Q ss_pred HHHhhHHHHhhhhcCCceEEEEE-------------CCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 85 TTWFLGNYIKSCLKNSGAFEVFC-------------DGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 85 ~~ffl~N~i~~~L~~~GaFEV~~-------------ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
|+|-+-|+=++..+ .|.|||+- ||+.|-+ +..+++-.+-.+-|+.--
T Consensus 4 ~~~~~~~~~~~~~M-ag~FEi~~~~~G~~rfrLka~NGeiI~s---Se~Y~sk~~a~~gI~sVk 63 (130)
T 2k8e_A 4 MLFSIHNFNQGVIM-AGWFELSKSSDNQFRFVLKAGNGETILT---SELYTSKTSAEKGIASVR 63 (130)
T ss_dssp ----------CCCC-CCEEEEEECTTCCEEEEEECTTSCEEEE---CCCBSSHHHHHHHHHHHH
T ss_pred EEEEEeccCcccee-eeeEEEEEcCCCCEEEEEEeCCCCEEEE---cCCcCCHHHHHHHHHHHH
Confidence 55667788777655 78999988 4455554 446899888888777543
No 67
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=24.33 E-value=49 Score=27.47 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=19.5
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHH
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFEL 127 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el 127 (149)
...+..++..+.|||-+|.||+.+.+
T Consensus 230 ~i~f~~~~~~~~srLidg~fPdy~~v 255 (378)
T 2avt_A 230 QILFRSEHISFYTRLLEGNYPDTDRL 255 (378)
T ss_dssp EEEEECSSEEEEEECCCSCCCCCGGG
T ss_pred EEEEEECCEEEEEEEecccCCChhhc
Confidence 34445567778899999999997653
No 68
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=24.22 E-value=1.5e+02 Score=19.00 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=22.7
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhc
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLY 136 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~ 136 (149)
+|-++-||+.++. . .|.. .++|.+.|++.+.
T Consensus 90 t~~~~~~G~~~~~-~-~G~~--~~~l~~~l~~~l~ 120 (122)
T 2vlu_A 90 TFLFMKEGDVKDR-V-VGAI--KEELTAKVGLHAA 120 (122)
T ss_dssp EEEEEETTEEEEE-E-ESSC--HHHHHHHHHHHHS
T ss_pred EEEEEeCCEEEEE-E-eCcC--HHHHHHHHHHHhc
Confidence 5777779998853 2 3433 8999999998875
No 69
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=24.20 E-value=1.3e+02 Score=18.42 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=23.8
Q ss_pred ceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhc
Q 041777 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLY 136 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~ 136 (149)
=++-++-||+.++. . . +.++.+++.+.|++.+.
T Consensus 74 Pt~~~~~~g~~~~~-~-~-g~~~~~~l~~~l~~~l~ 106 (109)
T 2yzu_A 74 PTVILFKDGQPVEV-L-V-GAQPKRNYQAKIEKHLP 106 (109)
T ss_dssp SEEEEEETTEEEEE-E-E-SCCCHHHHHHHHHTTC-
T ss_pred CEEEEEeCCcEeee-E-e-CCCCHHHHHHHHHHHhh
Confidence 46667778998873 2 2 45688999999988764
No 70
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=24.11 E-value=51 Score=27.38 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=19.1
Q ss_pred eEEEEECCEEEEeecccCCCCCHH
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEF 125 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~ 125 (149)
...+..++..+.|||-+|+||+.+
T Consensus 223 ~i~f~~~~~~~~srLidG~fPdy~ 246 (371)
T 3t0p_A 223 HIVFEFENTTVVSRLIEGEYFKID 246 (371)
T ss_dssp EEEEEETTEEEEEECCCSCCCCCG
T ss_pred EEEEEECCEEEEEEEecccCCChh
Confidence 444556788899999999999864
No 71
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=24.10 E-value=27 Score=24.99 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=19.5
Q ss_pred CCcchhhHHHHHHHHHhhCCC
Q 041777 1 MCFCRGHAMTTKHMLEEAFPG 21 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~ 21 (149)
.|+|.--+..+++.|.++||+
T Consensus 18 ~C~w~lRa~~laqeLl~tF~~ 38 (108)
T 2ojl_A 18 QCQWLLRAAWMAQELLSTFGA 38 (108)
T ss_dssp TTTCHHHHHHHHHHHHHHHGG
T ss_pred CCCChHHHHHHHHHHHHhcCc
Confidence 499999999999999999985
No 72
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=24.03 E-value=78 Score=18.77 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=16.4
Q ss_pred CCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 108 DGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 108 ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
||+. +. .| .++.+++.+.|++.+
T Consensus 62 ~G~~---~~-~G-~~~~~~l~~~l~~~l 84 (85)
T 1nho_A 62 NGVV---RF-VG-APSREELFEAINDEM 84 (85)
T ss_dssp TTTE---EE-EC-SSCCHHHHHHHHHHC
T ss_pred CCEE---EE-cc-CCCHHHHHHHHHHHh
Confidence 7776 11 23 578899999998875
No 73
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=23.78 E-value=1.3e+02 Score=19.96 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=24.7
Q ss_pred CceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhc
Q 041777 100 SGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLY 136 (149)
Q Consensus 100 ~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~ 136 (149)
.=++-++-||+.+.. . . +..+.+++.+.|++.+.
T Consensus 105 ~Pt~~~~~~G~~~~~-~-~-G~~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 105 VPTLVLFRRGAPVAT-W-V-GASPRRVLEERLRPYLE 138 (140)
T ss_dssp SSEEEEEETTEEEEE-E-E-SCCCHHHHHHHHHHHHT
T ss_pred cCEEEEEeCCcEEEE-E-e-CCCCHHHHHHHHHHHHc
Confidence 345777779998863 2 2 45678999999998875
No 74
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A
Probab=23.43 E-value=95 Score=26.80 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=22.6
Q ss_pred chhhHHHHHHHHHhhCCCcEEe--cccC
Q 041777 4 CRGHAMTTKHMLEEAFPGITVT--LANH 29 (149)
Q Consensus 4 yr~~f~~~~~~l~~~yP~i~i~--g~nY 29 (149)
|.+.|.++.+++++.+|+++|. |...
T Consensus 198 Y~~~~~~~a~a~k~~dP~i~via~G~~~ 225 (513)
T 2c7f_A 198 YGRIAEETARAMKMIDPSIELVACGSSS 225 (513)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEECCCSC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 7889999999999999999988 5443
No 75
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=23.17 E-value=1.4e+02 Score=22.27 Aligned_cols=37 Identities=14% Similarity=0.405 Sum_probs=30.0
Q ss_pred HHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 91 NYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 91 N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
.++..-|.+.|.++ ||.+|.. |+| ++++|-++|++-+
T Consensus 65 ky~~~ELGt~g~id---~~rlii~----G~~-~~~~i~~~L~~yI 101 (148)
T 2d74_B 65 KFLLREIATAGTLE---GRRVVLQ----GRF-TPYLIANKLKKYI 101 (148)
T ss_dssp HHHHHHSCCCEEEE---TTEEEES----SCC-CHHHHHHHHHHHH
T ss_pred HHHHHHhCCceeec---CCEEEEE----eee-CHHHHHHHHHHHH
Confidence 45566789999999 9999875 888 6888988888744
No 76
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=22.71 E-value=90 Score=23.27 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=40.7
Q ss_pred HHHHHHHHhhCCCcEEec-ccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhh
Q 041777 9 MTTKHMLEEAFPGITVTL-ANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61 (149)
Q Consensus 9 ~~~~~~l~~~yP~i~i~g-~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~ 61 (149)
.+-.+.+.+++|++.--| ..|++.-....+=-.-.++.+..-+++..+.++..
T Consensus 53 ~~A~~~l~~~~P~l~~~gG~~y~~~~~~~ClRD~~~~LRyitYa~lagd~~~L~ 106 (162)
T 2vml_A 53 KGAVQEVYNKFPYLTQPGQMGYGDTNQAKCARDISHYLRFITYSLVAGGTGPLD 106 (162)
T ss_dssp HHHHHHHHHHSGGGGSTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHHHHHHCcCccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHcCchhHHH
Confidence 455677788999975565 48999998888888888888888887666666554
No 77
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A
Probab=22.71 E-value=1e+02 Score=26.46 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=22.6
Q ss_pred chhhHHHHHHHHHhhCCCcEEe--cccC
Q 041777 4 CRGHAMTTKHMLEEAFPGITVT--LANH 29 (149)
Q Consensus 4 yr~~f~~~~~~l~~~yP~i~i~--g~nY 29 (149)
|.+.|.++.+++++.+|+++|. |...
T Consensus 190 Y~~~~~~~a~aik~~dP~i~via~G~~~ 217 (502)
T 1qw9_A 190 YGRIACEAAKVMKWVDPTIELVVCGSSN 217 (502)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEECCCSC
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 7888999999999999999988 5444
No 78
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=22.10 E-value=1.5e+02 Score=19.79 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=23.0
Q ss_pred ceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 101 GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
=++-++-||+.++. . . +..+.++|.+.|++.+
T Consensus 96 Pt~~~~~~G~~~~~-~-~-G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 96 PTLLLFKNGEVAAT-K-V-GALSKGQLKEFLDANL 127 (128)
T ss_dssp SEEEEEETTEEEEE-E-E-SCCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCEEEEE-E-c-CCCCHHHHHHHHHHhh
Confidence 35666678888864 2 2 4668899999998876
No 79
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=22.01 E-value=1.8e+02 Score=19.18 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=23.9
Q ss_pred eEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhccc
Q 041777 102 AFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNL 138 (149)
Q Consensus 102 aFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~ 138 (149)
+|-++-||+.+..- .|. +.++|.+.|++.+...
T Consensus 102 t~~~~~~G~~~~~~--~G~--~~~~l~~~l~~~~~~~ 134 (139)
T 3d22_A 102 TFFFLRDGQQVDKL--VGA--NKPELHKKITAILDSL 134 (139)
T ss_dssp EEEEEETTEEEEEE--ESC--CHHHHHHHHHHHHHTS
T ss_pred EEEEEcCCeEEEEE--eCC--CHHHHHHHHHHHhccC
Confidence 46677789988642 343 7899999999887643
No 80
>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum}
Probab=21.08 E-value=1.1e+02 Score=27.29 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=22.6
Q ss_pred chhhHHHHHHHHHhhCCCcEEe--cccC
Q 041777 4 CRGHAMTTKHMLEEAFPGITVT--LANH 29 (149)
Q Consensus 4 yr~~f~~~~~~l~~~yP~i~i~--g~nY 29 (149)
|.+.|.++.+++++.+|+|+|. |...
T Consensus 230 Y~~~~~~~a~AiK~vdP~i~via~G~~~ 257 (574)
T 2y2w_A 230 YAGAVDKVAHAMKLAESGLELVACGSSG 257 (574)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEECCSC
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCCc
Confidence 7888999999999999999988 6544
No 81
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=21.07 E-value=1.7e+02 Score=18.66 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=20.2
Q ss_pred CCcchhhHHHHHHHHHhhCCCcEEecccCC
Q 041777 1 MCFCRGHAMTTKHMLEEAFPGITVTLANHP 30 (149)
Q Consensus 1 sCgyr~~f~~~~~~l~~~yP~i~i~g~nYp 30 (149)
.|++=+.....-+.+.++|+++++.+-+-.
T Consensus 35 ~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~ 64 (136)
T 1lu4_A 35 WCPFCNAEAPSLSQVAAANPAVTFVGIATR 64 (136)
T ss_dssp TCHHHHHHHHHHHHHHHHCTTSEEEEEECS
T ss_pred cChhHHHHHHHHHHHHHHCCCcEEEEEEcC
Confidence 376655555555567778889888776654
No 82
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=20.34 E-value=1e+02 Score=20.61 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=22.2
Q ss_pred EEECCEEEEeecccCCCCCHHHHHHHHHHHhccc
Q 041777 105 VFCDGELVFSKLMEQRFPGEFELRELVSRKLYNL 138 (149)
Q Consensus 105 V~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~ 138 (149)
|-=||+.++... +..+.+++.+.|++.+..+
T Consensus 124 id~~G~i~~~~~---g~~~~~~l~~~i~~ll~~~ 154 (158)
T 3eyt_A 124 IDKAGDLRAHHF---GDVSELLLGAEIATLLGEA 154 (158)
T ss_dssp ECTTSEEEEEEE---SCCCHHHHHHHHHHHHTSC
T ss_pred ECCCCCEEEEEe---CCCCHHHHHHHHHHHhccC
Confidence 334788888532 3467889999999887643
No 83
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=20.25 E-value=1.9e+02 Score=18.78 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=23.6
Q ss_pred CceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHh
Q 041777 100 SGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135 (149)
Q Consensus 100 ~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l 135 (149)
.=+|-++-||+.+.. ..|. +.++|.+.|++.+
T Consensus 89 ~Pt~~~~~~G~~~~~--~~G~--~~~~l~~~l~~~l 120 (121)
T 2j23_A 89 MPTFVFFKNGQKIDT--VVGA--DPSKLQAAITQHS 120 (121)
T ss_dssp SSEEEEEETTEEEEE--EESS--CHHHHHHHHHHHT
T ss_pred ccEEEEEECCeEEee--EcCC--CHHHHHHHHHHhh
Confidence 346777779998875 2344 8899999998765
No 84
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=20.07 E-value=18 Score=30.53 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=22.1
Q ss_pred CceEEEEECCEEEEeecccCCCCCHHHHHHHHHH
Q 041777 100 SGAFEVFCDGELVFSKLMEQRFPGEFELRELVSR 133 (149)
Q Consensus 100 ~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~ 133 (149)
+-..++|+||-+|+|+-++...-..+++++++++
T Consensus 197 ~~~v~~YvDDili~s~~~~e~~~~l~~v~~~l~~ 230 (455)
T 1rw3_A 197 DLILLQYVDDLLLAATSELDCQQGTRALLQTLGN 230 (455)
T ss_dssp TCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcCCEEEecCCHHHHHHHHHHHHHHHHH
Confidence 4568899999999997654433334444444443
No 85
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=20.01 E-value=60 Score=22.87 Aligned_cols=33 Identities=9% Similarity=0.007 Sum_probs=21.0
Q ss_pred ECCEEEEeecccC-----CCCCHHHHHHHHHHHhcccc
Q 041777 107 CDGELVFSKLMEQ-----RFPGEFELRELVSRKLYNLR 139 (149)
Q Consensus 107 ~ng~lV~SKl~~g-----rfP~~~el~~~I~~~l~~~~ 139 (149)
=||+.++.-..+. +..+.++|.+.|++.+..+.
T Consensus 125 ~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~ 162 (188)
T 2cvb_A 125 ERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE 162 (188)
T ss_dssp TTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred CCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCC
Confidence 4788888711111 11368899999998876543
Done!