Query 041778
Match_columns 72
No_of_seqs 58 out of 60
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 10:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0916 1,3-beta-glucan syntha 98.2 4.9E-07 1.1E-11 80.9 2.1 48 24-72 11-59 (1679)
2 KOG0917 Uncharacterized conser 62.5 3 6.6E-05 33.3 0.5 21 51-71 10-30 (338)
3 PF00525 Crystallin: Alpha cry 30.4 18 0.00039 22.5 0.1 23 33-55 26-48 (59)
4 PRK10241 hydroxyacylglutathion 24.4 21 0.00045 25.7 -0.4 20 41-60 199-221 (251)
5 TIGR03413 GSH_gloB hydroxyacyl 22.4 24 0.00051 25.3 -0.4 21 41-61 198-221 (248)
6 PF06469 DUF1088: Domain of Un 22.3 31 0.00068 25.2 0.2 10 54-63 12-21 (169)
7 PF15201 Rod_cone_degen: Progr 15.9 79 0.0017 19.4 0.9 13 57-69 18-30 (54)
8 PLN02469 hydroxyacylglutathion 15.7 40 0.00087 24.6 -0.5 17 43-59 210-229 (258)
9 PRK07742 phosphate butyryltran 10.6 99 0.0022 23.2 0.3 16 57-72 161-176 (299)
10 PRK11183 D-lactate dehydrogena 10.5 1.2E+02 0.0026 25.8 0.8 20 42-61 41-60 (564)
No 1
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=98.23 E-value=4.9e-07 Score=80.94 Aligned_cols=48 Identities=50% Similarity=0.657 Sum_probs=38.6
Q ss_pred hhhhhhcccCCCCCCcCCcccccccch-hhhhHHhhhcccccCCCccccC
Q 041778 24 QAQKMFVDVQDEDSSAIDSELVPSSLA-AIAPVLRVANQIEKDNPRVAYL 72 (72)
Q Consensus 24 r~~t~~v~~~~~~~~~~dSE~vPssl~-~I~piLRvAneiE~~~PRVAyL 72 (72)
|+.+++++.++.+ +.+|++.+|+++. +|+||||+||+||.+|||+|||
T Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~s~~~~i~pilr~a~~i~~~~p~~a~l 59 (1679)
T KOG0916|consen 11 RSDDQTIYDGYEY-ESYDSSGLPSSLYDDIAPILRVANEIEQQNPRVAYL 59 (1679)
T ss_pred hcchhhhccCCCC-CCCCcccCCcccccccchhhhccccccccCchhhhc
Confidence 3344444555655 5888888888888 5999999999999999999996
No 2
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.50 E-value=3 Score=33.28 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=20.4
Q ss_pred hhhhHHhhhcccccCCCcccc
Q 041778 51 AIAPVLRVANQIEKDNPRVAY 71 (72)
Q Consensus 51 ~I~piLRvAneiE~~~PRVAy 71 (72)
.|+++||.|.|.++.+|-|||
T Consensus 10 si~~~l~~a~e~~k~dpvvay 30 (338)
T KOG0917|consen 10 SIQHHLRTAQEHDKRDPVVAY 30 (338)
T ss_pred HHHHHHHHHHhhcccccHHHH
Confidence 799999999999999999998
No 3
>PF00525 Crystallin: Alpha crystallin A chain, N terminal; InterPro: IPR003090 The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fibre cells. Four major groups of crystallin have been distinguished on the basis of size, charge and immunological properties: alpha-, beta- and gamma-crystallins occur in all vertebrate classes (though gamma-crystallins are low or absent in avian lenses); and delta-crystallin is found exclusively in reptiles and birds [, ]. Alpha-crystallin occurs as large aggregates, comprising two types of related subunits (A and B) that are highly similar to the small (15-30kDa) heat shock proteins (HSPs), particularly in their C-terminal halves. The relationship between these families is one of classic gene duplication and divergence, from the small HSP family, allowing adaptation to novel functions. Divergence probably occurred prior to evolution of the eye lens, alpha-crystallin being found in small amounts in tissues outside the lens []. Alpha-crystallin has chaperone-like properties including the ability to prevent the precipitation of denatured proteins and to increase cellular tolerance to stress []. It has been suggested that these functions are important for the maintenance of lens transparency and the prevention of cataracts. This is supported by the observation that alpha-crystallin mutations show an association with cataract formation. This entry represents the N-terminal domain of alpha-crystallin. It is not necessary for dimerisation or chaperone activity, but appears to be required for the formation of higher order aggregates [, ].; GO: 0005212 structural constituent of eye lens; PDB: 2YGD_P.
Probab=30.37 E-value=18 Score=22.48 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=13.5
Q ss_pred CCCCCCcCCcccccccchhhhhH
Q 041778 33 QDEDSSAIDSELVPSSLAAIAPV 55 (72)
Q Consensus 33 ~~~~~~~~dSE~vPssl~~I~pi 55 (72)
+++|+-.+|+|++|.+...+.|+
T Consensus 26 Q~FGEgL~d~DLf~~~~s~lsp~ 48 (59)
T PF00525_consen 26 QNFGEGLFDSDLFPSSSSTLSPY 48 (59)
T ss_dssp TTSEESSTTTT---BT-TCSS--
T ss_pred HhhccccCHhhhccccccccCcc
Confidence 78888899999999984444443
No 4
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=24.41 E-value=21 Score=25.69 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=15.8
Q ss_pred Ccccccccch-h--hhhHHhhhc
Q 041778 41 DSELVPSSLA-A--IAPVLRVAN 60 (72)
Q Consensus 41 dSE~vPssl~-~--I~piLRvAn 60 (72)
+-..||++|+ | |-||||+-+
T Consensus 199 ~~~t~pstl~~E~~~Npflr~~~ 221 (251)
T PRK10241 199 NQITLPVILKNERQINLFLRTED 221 (251)
T ss_pred CCCcCCccHHHHHhhCCeecCCC
Confidence 3467999999 3 999999754
No 5
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=22.40 E-value=24 Score=25.27 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=16.4
Q ss_pred Ccccccccch-h--hhhHHhhhcc
Q 041778 41 DSELVPSSLA-A--IAPVLRVANQ 61 (72)
Q Consensus 41 dSE~vPssl~-~--I~piLRvAne 61 (72)
+-..+|++|+ | +-||||+-+.
T Consensus 198 ~~~t~pstl~~E~~~Npflr~~~~ 221 (248)
T TIGR03413 198 GQPTLPSTLGLERATNPFLRADDP 221 (248)
T ss_pred CCCCCCccHHHHHhhCCeecCCCH
Confidence 3467999999 3 9999997543
No 6
>PF06469 DUF1088: Domain of Unknown Function (DUF1088); InterPro: IPR010508 This domain is found in the neurobeachins. The function of this region is not known.
Probab=22.26 E-value=31 Score=25.21 Aligned_cols=10 Identities=50% Similarity=0.753 Sum_probs=8.0
Q ss_pred hHHhhhcccc
Q 041778 54 PVLRVANQIE 63 (72)
Q Consensus 54 piLRvAneiE 63 (72)
=|+|||||-|
T Consensus 12 HivRVAnEAe 21 (169)
T PF06469_consen 12 HIVRVANEAE 21 (169)
T ss_pred HHHHHhHHHH
Confidence 3899999865
No 7
>PF15201 Rod_cone_degen: Progressive rod-cone degeneration
Probab=15.86 E-value=79 Score=19.36 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=10.4
Q ss_pred hhhcccccCCCcc
Q 041778 57 RVANQIEKDNPRV 69 (72)
Q Consensus 57 RvAneiE~~~PRV 69 (72)
|.||.||+|--+|
T Consensus 18 rfanrvqpeps~v 30 (54)
T PF15201_consen 18 RFANRVQPEPSGV 30 (54)
T ss_pred HHhccCCCCCCCC
Confidence 7899999986654
No 8
>PLN02469 hydroxyacylglutathione hydrolase
Probab=15.72 E-value=40 Score=24.62 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.3
Q ss_pred ccccccch-h--hhhHHhhh
Q 041778 43 ELVPSSLA-A--IAPVLRVA 59 (72)
Q Consensus 43 E~vPssl~-~--I~piLRvA 59 (72)
..||++|. | +-||||+.
T Consensus 210 ~t~pstl~~E~~~Npflr~~ 229 (258)
T PLN02469 210 PTVPSTIEEELETNPFMRVD 229 (258)
T ss_pred CcCCccHHHHHhhCCeecCC
Confidence 56899999 3 99999974
No 9
>PRK07742 phosphate butyryltransferase; Validated
Probab=10.61 E-value=99 Score=23.16 Aligned_cols=16 Identities=50% Similarity=0.544 Sum_probs=12.2
Q ss_pred hhhcccccCCCccccC
Q 041778 57 RVANQIEKDNPRVAYL 72 (72)
Q Consensus 57 RvAneiE~~~PRVAyL 72 (72)
..|+.+.-++||||.|
T Consensus 161 ~~a~~lGie~PkVAlL 176 (299)
T PRK07742 161 EVARAIGIDLPKVAPL 176 (299)
T ss_pred HHHHHhCCCCCeEEEE
Confidence 5666676678999976
No 10
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=10.52 E-value=1.2e+02 Score=25.83 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.6
Q ss_pred cccccccchhhhhHHhhhcc
Q 041778 42 SELVPSSLAAIAPVLRVANQ 61 (72)
Q Consensus 42 SE~vPssl~~I~piLRvAne 61 (72)
-=+.|.+..++.-|||+|++
T Consensus 41 AVV~P~SteEVa~IVklC~e 60 (564)
T PRK11183 41 AVVFPGTLLELWRVLQACVA 60 (564)
T ss_pred EEEecCCHHHHHHHHHHHHH
Confidence 34789999999999999986
Done!