Query 041778
Match_columns 72
No_of_seqs 58 out of 60
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 18:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxl_A Vacuolar protein sortin 98.0 4.6E-07 1.6E-11 63.6 -1.4 32 41-72 6-37 (183)
2 2rkk_A Vacuolar protein sortin 85.0 0.11 3.7E-06 36.3 -1.0 21 51-71 5-26 (168)
3 2bbw_A Adenylate kinase 4, AK4 20.4 37 0.0013 22.2 1.2 14 59-72 233-246 (246)
4 1hym_B CMTI-V, hydrolyzed cucu 11.1 64 0.0022 16.1 0.3 8 65-72 19-26 (26)
5 4sgb_I Potato inhibitor, PCI-1 8.8 84 0.0029 18.3 0.3 6 66-71 41-46 (51)
6 1ecm_A Endo-oxabicyclic transi 8.1 81 0.0028 19.1 0.0 12 61-72 98-109 (109)
7 4fle_A Esterase; structural ge 6.9 1.6E+02 0.0053 17.6 0.9 21 46-66 179-199 (202)
8 2v7k_A PRNB; IDO, TDO, biosynt 6.8 1.1E+02 0.0037 23.0 0.2 26 42-71 89-114 (361)
9 1hym_A CMTI-V, hydrolyzed cucu 6.3 81 0.0028 17.3 -0.6 14 56-69 19-32 (45)
10 3sp7_A BCL-2-like protein 1; a 6.0 89 0.0031 21.0 -0.6 22 47-68 44-66 (172)
No 1
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=97.99 E-value=4.6e-07 Score=63.61 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=29.1
Q ss_pred CcccccccchhhhhHHhhhcccccCCCccccC
Q 041778 41 DSELVPSSLAAIAPVLRVANQIEKDNPRVAYL 72 (72)
Q Consensus 41 dSE~vPssl~~I~piLRvAneiE~~~PRVAyL 72 (72)
+=..||++|..|.||||.|+|+|..+|+|||+
T Consensus 6 ~l~~vP~~LK~I~p~L~~A~Ele~~~PvVaY~ 37 (183)
T 2lxl_A 6 PLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYY 37 (183)
T ss_dssp CCCCCCGGGSSSHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCCCChhHHhHHHHHHHHHHHhhcccHHHHH
Confidence 34479999999999999999999999999994
No 2
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=85.05 E-value=0.11 Score=36.31 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=20.0
Q ss_pred hhhhHHhhhcccccC-CCcccc
Q 041778 51 AIAPVLRVANQIEKD-NPRVAY 71 (72)
Q Consensus 51 ~I~piLRvAneiE~~-~PRVAy 71 (72)
.|.|+|+-|+|+|.. +|-|||
T Consensus 5 ~i~p~l~rA~Ele~~~~PvVaY 26 (168)
T 2rkk_A 5 NAARVVATAKDFDKVGLGIIGY 26 (168)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHH
T ss_pred hHHHHHHHHHHHHhccCcchhH
Confidence 689999999999999 999998
No 3
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=20.35 E-value=37 Score=22.15 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=10.6
Q ss_pred hcccccCCCccccC
Q 041778 59 ANQIEKDNPRVAYL 72 (72)
Q Consensus 59 AneiE~~~PRVAyL 72 (72)
.+.+...+||.|||
T Consensus 233 ~~~~~~~~~~~~~~ 246 (246)
T 2bbw_A 233 SNKITPIQSKEAYL 246 (246)
T ss_dssp HTTSCCCCCGGGC-
T ss_pred HhhCCCCCcccccC
Confidence 35678899999997
No 4
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=11.10 E-value=64 Score=16.11 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=4.0
Q ss_pred CCCccccC
Q 041778 65 DNPRVAYL 72 (72)
Q Consensus 65 ~~PRVAyL 72 (72)
.-|+|+||
T Consensus 19 ~~P~iG~~ 26 (26)
T 1hym_B 19 SPPRIGXX 26 (26)
T ss_dssp CCSBCC--
T ss_pred ECCcccCC
Confidence 45777775
No 5
>4sgb_I Potato inhibitor, PCI-1; complex(serine proteinase-inhibitor); 2.10A {Streptomyces griseus} SCOP: g.69.1.1 PDB: 2jzm_A 1tih_A 1qh2_B
Probab=8.82 E-value=84 Score=18.26 Aligned_cols=6 Identities=50% Similarity=1.315 Sum_probs=3.6
Q ss_pred CCcccc
Q 041778 66 NPRVAY 71 (72)
Q Consensus 66 ~PRVAy 71 (72)
+|||||
T Consensus 41 D~rIay 46 (51)
T 4sgb_I 41 DPHIAY 46 (51)
T ss_dssp CTTCCE
T ss_pred CCceee
Confidence 566665
No 6
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=8.09 E-value=81 Score=19.06 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=0.0
Q ss_pred ccccCCCccccC
Q 041778 61 QIEKDNPRVAYL 72 (72)
Q Consensus 61 eiE~~~PRVAyL 72 (72)
+.+..+.||||+
T Consensus 98 ~~~~~~~~v~~~ 109 (109)
T 1ecm_A 98 KINPHSARIAFL 109 (109)
T ss_dssp ------------
T ss_pred ccCCCCCeeeeC
Confidence 344456688885
No 7
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=6.94 E-value=1.6e+02 Score=17.60 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=15.7
Q ss_pred cccchhhhhHHhhhcccccCC
Q 041778 46 PSSLAAIAPVLRVANQIEKDN 66 (72)
Q Consensus 46 Pssl~~I~piLRvAneiE~~~ 66 (72)
+.-+..|.-||.+|.-+|...
T Consensus 179 ~~~~~~I~~FL~~a~~l~~~~ 199 (202)
T 4fle_A 179 DHYFSPIVTFLGLATALEHHH 199 (202)
T ss_dssp GGGHHHHHHHHTCCCCTTC--
T ss_pred HHHHHHHHHHHhhhhhccccc
Confidence 445668999999999998753
No 8
>2v7k_A PRNB; IDO, TDO, biosynthetic protein; HET: HEM DTR; 1.70A {Pseudomonas fluorescens} PDB: 2v7j_A* 2v7i_A* 2v7l_A* 2v7m_A* 2x66_A* 2x67_A* 2x68_A*
Probab=6.81 E-value=1.1e+02 Score=22.99 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=19.4
Q ss_pred cccccccchhhhhHHhhhcccccCCCcccc
Q 041778 42 SELVPSSLAAIAPVLRVANQIEKDNPRVAY 71 (72)
Q Consensus 42 SE~vPssl~~I~piLRvAneiE~~~PRVAy 71 (72)
++++|..++ |+++|+..++-- |+..|
T Consensus 89 ~~~lP~~ia---Pl~~vs~~Lglp-P~lty 114 (361)
T 2v7k_A 89 AEVVPGLEP---VLLDLARATNLP-PRETL 114 (361)
T ss_dssp HHHSTTHHH---HHHHHHHHHTSC-SSCCH
T ss_pred ccCCCcccc---HHHHHHHHcCcC-Ccccc
Confidence 368888777 999999888764 65444
No 9
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=6.30 E-value=81 Score=17.34 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=9.8
Q ss_pred HhhhcccccCCCcc
Q 041778 56 LRVANQIEKDNPRV 69 (72)
Q Consensus 56 LRvAneiE~~~PRV 69 (72)
.-++.-||.|||.|
T Consensus 19 ~~A~~~I~~e~P~v 32 (45)
T 1hym_A 19 SVAKAIIERQNPNV 32 (45)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCC
Confidence 34556688888876
No 10
>3sp7_A BCL-2-like protein 1; apoptosis regulator-inhibitor complex; HET: 03B; 1.40A {Homo sapiens} PDB: 2lp8_A* 2lpc_A 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 4ehr_A* 3spf_A* 2pon_B 3r85_A 2p1l_A 4a1u_A* 2yj1_A 2yq7_A 2yq6_A 3fdm_A ...
Probab=5.97 E-value=89 Score=20.95 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=14.5
Q ss_pred ccchhhhhHHh-hhcccccCCCc
Q 041778 47 SSLAAIAPVLR-VANQIEKDNPR 68 (72)
Q Consensus 47 ssl~~I~piLR-vAneiE~~~PR 68 (72)
..+..+..-|| +|+|+|..+|+
T Consensus 44 ~~~~~v~~~Lr~~gdelE~~~~~ 66 (172)
T 3sp7_A 44 TESEAVKQALREAGDEFELRYRR 66 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccHHHHHHHHHHHHHHHHHHhHH
Confidence 34456655554 99999987765
Done!